Query 019487
Match_columns 340
No_of_seqs 104 out of 120
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03899 ATP_synt_I: ATP synth 98.1 1.1E-05 2.4E-10 63.4 7.6 93 213-314 2-100 (100)
2 PF12966 AtpR: N-ATPase, AtpR 94.2 0.15 3.1E-06 41.6 6.1 78 235-323 2-81 (85)
3 PRK05760 F0F1 ATP synthase sub 92.5 0.9 1.9E-05 39.2 8.5 103 213-329 10-118 (124)
4 PRK06099 F0F1 ATP synthase sub 89.5 1.6 3.5E-05 38.2 7.3 87 229-329 30-120 (126)
5 PRK08049 F0F1 ATP synthase sub 86.8 9.9 0.00021 33.3 10.5 102 209-328 10-120 (124)
6 COG3312 AtpI F0F1-type ATP syn 81.6 32 0.00069 30.7 11.3 101 208-330 10-123 (128)
7 PF14362 DUF4407: Domain of un 72.2 19 0.0004 34.5 8.0 90 201-291 10-100 (301)
8 PF06738 DUF1212: Protein of u 67.3 19 0.00041 31.9 6.5 66 184-253 73-145 (193)
9 PRK10862 SoxR reducing system 62.0 29 0.00063 30.9 6.6 58 202-260 68-130 (154)
10 PF11712 Vma12: Endoplasmic re 55.4 66 0.0014 28.0 7.6 59 203-261 69-138 (142)
11 PLN00097 photosystem I light h 55.3 6.1 0.00013 38.2 1.3 22 34-55 45-66 (244)
12 PF04246 RseC_MucC: Positive r 53.8 35 0.00077 29.0 5.6 59 202-260 61-123 (135)
13 PF04148 Erv26: Transmembrane 52.4 74 0.0016 30.4 7.9 74 201-286 32-105 (211)
14 PF12794 MscS_TM: Mechanosensi 49.5 48 0.001 32.8 6.5 70 163-241 265-334 (340)
15 COG4965 TadB Flp pilus assembl 46.2 71 0.0015 32.1 7.1 41 212-252 83-123 (309)
16 COG3086 RseC Positive regulato 45.2 61 0.0013 29.6 5.9 60 200-261 66-131 (150)
17 PRK08378 hypothetical protein; 43.9 85 0.0018 26.5 6.2 48 209-256 24-76 (93)
18 PLN00048 photosystem I light h 41.0 33 0.00072 33.6 3.8 22 34-55 43-64 (262)
19 PF06166 DUF979: Protein of un 40.4 52 0.0011 33.1 5.1 59 199-257 79-144 (308)
20 PF07895 DUF1673: Protein of u 39.3 1.2E+02 0.0026 28.3 7.1 26 230-256 151-176 (205)
21 TIGR03165 F1F0_chp_2 F1/F0 ATP 38.7 59 0.0013 26.8 4.4 70 235-321 2-79 (83)
22 COG0109 CyoE Polyprenyltransfe 37.7 1.8E+02 0.0038 29.4 8.3 114 201-323 16-139 (304)
23 PF12597 DUF3767: Protein of u 34.1 1.3E+02 0.0027 26.1 5.9 45 212-256 42-92 (118)
24 COG5415 Predicted integral mem 32.4 2.3E+02 0.0049 27.8 7.8 50 202-252 34-87 (251)
25 PF02517 Abi: CAAX protease se 32.3 1.6E+02 0.0035 22.4 5.8 38 215-252 37-74 (91)
26 PF00584 SecE: SecE/Sec61-gamm 32.2 72 0.0016 23.5 3.6 35 210-244 21-55 (57)
27 PF03030 H_PPase: Inorganic H+ 31.3 75 0.0016 35.2 5.0 48 209-256 40-94 (682)
28 PF03907 Spo7: Spo7-like prote 30.7 1.9E+02 0.0042 27.7 7.0 33 200-232 15-47 (207)
29 PRK09917 hypothetical protein; 30.0 1.9E+02 0.0042 26.0 6.6 91 217-319 16-106 (157)
30 PF04418 DUF543: Domain of unk 29.2 65 0.0014 26.0 3.2 43 209-251 26-68 (75)
31 PRK07597 secE preprotein trans 29.0 82 0.0018 23.9 3.5 34 210-243 29-62 (64)
32 PF10112 Halogen_Hydrol: 5-bro 28.5 1.1E+02 0.0024 27.6 5.0 32 220-251 17-48 (199)
33 PRK11646 multidrug resistance 27.8 4.6E+02 0.01 25.4 9.3 28 202-229 3-30 (400)
34 PRK00733 hppA membrane-bound p 27.8 2.4E+02 0.0052 31.4 8.0 27 229-255 50-78 (666)
35 TIGR00964 secE_bact preprotein 27.0 94 0.002 23.1 3.5 34 210-243 20-53 (55)
36 PF13244 DUF4040: Domain of un 27.0 2.9E+02 0.0062 21.7 6.4 47 210-256 14-65 (70)
37 COG3808 OVP1 Inorganic pyropho 26.4 95 0.0021 34.0 4.6 40 209-248 52-91 (703)
38 COG4818 Predicted membrane pro 25.6 66 0.0014 27.7 2.7 21 233-253 4-24 (105)
39 PF06946 Phage_holin_5: Phage 25.2 1.1E+02 0.0023 26.1 3.8 14 237-250 38-51 (93)
40 PF15110 TMEM141: TMEM141 prot 24.8 2.3E+02 0.005 24.2 5.7 57 199-255 13-80 (94)
41 PRK14856 nhaA pH-dependent sod 24.7 2.5E+02 0.0054 29.7 7.2 44 213-256 162-207 (438)
42 PF06645 SPC12: Microsomal sig 24.6 2E+02 0.0044 22.9 5.2 38 211-248 10-49 (76)
43 COG0344 Predicted membrane pro 24.3 79 0.0017 30.0 3.2 32 236-267 9-42 (200)
44 PLN00101 Photosystem I light-h 23.8 1.2E+02 0.0026 29.7 4.4 21 35-55 55-75 (250)
45 PLN03199 delta6-acyl-lipid des 23.4 2.4E+02 0.0051 29.5 6.8 23 231-253 153-175 (485)
46 PLN00100 light-harvesting comp 23.1 1.1E+02 0.0024 29.9 4.0 21 35-55 37-57 (246)
47 PF10864 DUF2663: Protein of u 23.1 4.3E+02 0.0093 23.6 7.4 15 202-216 9-23 (130)
48 COG2966 Uncharacterized conser 23.0 2.2E+02 0.0047 27.5 6.0 65 183-248 94-162 (250)
49 PF14476 Chloroplast_duf: Peta 22.4 2.8E+02 0.0061 28.1 6.7 27 192-218 182-208 (313)
50 KOG2890 Predicted membrane pro 21.6 62 0.0014 32.8 2.1 28 232-259 195-222 (326)
51 COG0690 SecE Preprotein transl 21.5 1.4E+02 0.003 23.7 3.7 49 194-242 19-71 (73)
52 PLN02975 complex I subunit 21.0 1.4E+02 0.0031 25.4 3.8 41 219-261 36-82 (97)
No 1
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=98.12 E-value=1.1e-05 Score=63.39 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc----ccccc--CCCCCCchHHHHHHHH
Q 019487 213 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA----KGLMK--GAVGQPRLLVPVVLVM 286 (340)
Q Consensus 213 LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~----~g~~~--galgqpRLLVPV~Lvv 286 (340)
+...++.+++++.+.+++.++.+.++|+++|++.+++...++.+.++++.+.. ++..+ ...---|+++-+++++
T Consensus 2 i~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~~ 81 (100)
T PF03899_consen 2 IVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLFI 81 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999996664211 11111 0012357888888888
Q ss_pred HHHHhhccccCCccccchhHHHHHHHHH
Q 019487 287 IYNRWNEITVPEYGFLHLELIPMLVGFF 314 (340)
Q Consensus 287 ~a~rwn~i~~p~~g~~~LeLlP~llGFL 314 (340)
+..++.. +++.++.++||+
T Consensus 82 ~~~~~~~---------~~~~~~~~~Gl~ 100 (100)
T PF03899_consen 82 LAFKFPP---------ELNPIALLIGLL 100 (100)
T ss_pred HHHHHHc---------ccHHHHHHHHHC
Confidence 8888832 488999999985
No 2
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=94.21 E-value=0.15 Score=41.59 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccccccccCCCCC--CchHHHHHHHHHHHHhhccccCCccccchhHHHHHHH
Q 019487 235 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQ--PRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVG 312 (340)
Q Consensus 235 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~~galgq--pRLLVPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llG 312 (340)
+.+..+++|.+.|.+|..-|-.+|.++..+.+.. .--.++ .|+.+.++...+.++.+ ...++..++|
T Consensus 2 ~~~~~~~~G~~lG~~yF~gLw~tvr~~~~~~~p~-~~~~~S~l~R~~l~~~~f~~~~~~~----------~~~lL~~l~G 70 (85)
T PF12966_consen 2 QLLLAFLAGLLLGALYFGGLWWTVRRLLASKRPA-LWFLLSFLLRLALVLAGFYLLAQGG----------WWRLLACLLG 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHH
Confidence 4578899999999999999999999996422110 001122 45655555554444432 2669999999
Q ss_pred HHHHHHHHHHH
Q 019487 313 FFTYKIATFFQ 323 (340)
Q Consensus 313 FLTYK~AlLvq 323 (340)
|++.+..++..
T Consensus 71 F~~aR~i~~r~ 81 (85)
T PF12966_consen 71 FLLARFIVLRR 81 (85)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 3
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=92.49 E-value=0.9 Score=39.20 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHH----HHHHHHHhHhhhccc--ccccccCCCCCCchHHHHHHHH
Q 019487 213 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGSTVDSMAAG--AKGLMKGAVGQPRLLVPVVLVM 286 (340)
Q Consensus 213 LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGll----YLrLL~rsVD~Lg~~--~~g~~~galgqpRLLVPV~Lvv 286 (340)
++..=++++.++++.+++..+.+.|.|+++|++.+++ |.+.+-|+...=..+ ...-..|-.. .+++-+++.+
T Consensus 10 ~l~~Q~~~~l~~a~~~~~~~~~~~a~Sal~Ggl~~~lP~~~Fa~~~fr~~g~~~~~~i~~~fy~GE~~--K~~lTi~lf~ 87 (124)
T PRK05760 10 LLLIQLVVVLVAALVLWVAVGPVWGYSALIGGLIAVLANAYFAHCAFRFSGARAAKAIVRSFYAGEAG--KIIITAVLFA 87 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4444555666666666767899999999999998765 444444443211000 0000111112 2455555554
Q ss_pred HHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 019487 287 IYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV 329 (340)
Q Consensus 287 ~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvqa~rdv~ 329 (340)
++-+|-. +++..+.|.||+ .++.++-+-+.+
T Consensus 88 l~f~~~~---------~l~~~~lf~gf~---l~l~~~w~aP~~ 118 (124)
T PRK05760 88 LAFAGVQ---------PLLPPLKFGTYL---LVLGVNWFAPLL 118 (124)
T ss_pred HHHHHhc---------hhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444422 355555555655 577776665544
No 4
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=89.52 E-value=1.6 Score=38.16 Aligned_cols=87 Identities=18% Similarity=0.327 Sum_probs=46.6
Q ss_pred hhccCHHHHHHHHHHHHHHHH---HHHHHH-HhHhhhcccccccccCCCCCCchHHHHHHHHHHHHhhccccCCccccch
Q 019487 229 YISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHL 304 (340)
Q Consensus 229 ~l~ys~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~~~~g~~~galgqpRLLVPV~Lvv~a~rwn~i~~p~~g~~~L 304 (340)
+...|.+.|+|+++|++.+++ |.-++. ++-.+-..-.+.-..|-.++ +++-+++++++=.|=. ++
T Consensus 30 ~~~~~~~~a~Sal~Ggli~~LPn~~Fa~~aF~~~~~~~~~~~sFy~GE~~K--~ilTivlf~laf~~~~---------~~ 98 (126)
T PRK06099 30 LLIWQGQSAVSFLLGFLSAFLPFCLFVYWIFFRKQKNSSKLTAFYRGEAIK--FILTIVLIVIAFKLLP---------VL 98 (126)
T ss_pred HHHhhHHHHHHHHHhhHHHHHhHHHHHHHHHHhccchHHHHHHHHHHhHHH--HHHHHHHHHHHHHHhh---------hh
Confidence 345799999999999999874 444444 22111100000001111122 4444444444433311 48
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 019487 305 ELIPMLVGFFTYKIATFFQAVEEAV 329 (340)
Q Consensus 305 eLlP~llGFLTYK~AlLvqa~rdv~ 329 (340)
+.+|.++||+. +++++-+-+..
T Consensus 99 ~~~~lf~~y~l---~l~~~~~aP~~ 120 (126)
T PRK06099 99 HFIAFFVGFFI---ALVLNNLIPFI 120 (126)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 89999888875 66666655543
No 5
>PRK08049 F0F1 ATP synthase subunit I; Validated
Probab=86.82 E-value=9.9 Score=33.26 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHH---HHHHHH-HhHhhhccccccc-----ccCCCCCCchH
Q 019487 209 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGL-----MKGAVGQPRLL 279 (340)
Q Consensus 209 LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~~~~g~-----~~galgqpRLL 279 (340)
|-+++++.=+++..+.++ +|...+.+.|.|.++|++..++ |.-+.. |+-.. ...++. ..|-.. .++
T Consensus 10 la~klll~Q~~~~~~~s~-~~~~~~~~~~~Sal~Ggl~~~lPn~~Fa~~afr~~~~--~~a~~~v~~sFy~GE~l--K~~ 84 (124)
T PRK08049 10 VARKLLLLQLLTFVASGA-LFSLKDPFWGVSALAGGLAAWLPNVLFMIFAWRHQAH--TPAKGRVAWSFAFGEAL--KVL 84 (124)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCHHHHHHHHHhhHHHHHhHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH--HHH
Confidence 334445554444444443 4566799999999999998865 222111 22100 001000 011111 255
Q ss_pred HHHHHHHHHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 019487 280 VPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEA 328 (340)
Q Consensus 280 VPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvqa~rdv 328 (340)
+-++|++++-+|= +.+.+|.++||+. ++.++-+-+.
T Consensus 85 lTi~lf~~af~~~----------~~~~~plf~ty~l---~L~~~~~aP~ 120 (124)
T PRK08049 85 ATIALLVVALGVF----------KAVFLPLGLTWLS---VLVVQILAPA 120 (124)
T ss_pred HHHHHHHHHHHHH----------hHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5556655555553 2457788888874 6666665543
No 6
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=81.64 E-value=32 Score=30.67 Aligned_cols=101 Identities=21% Similarity=0.319 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHH----HHHHHHH---------hHhhhcccccccccCCCC
Q 019487 208 KLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGS---------TVDSMAAGAKGLMKGAVG 274 (340)
Q Consensus 208 ~LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGll----YLrLL~r---------sVD~Lg~~~~g~~~galg 274 (340)
+.+++|++.-+++..+..+ ++..++++.++|++.|+.+-++ +....-+ -|.+.- .|-..
T Consensus 10 k~ar~lLliql~~~ivaa~-~f~v~~~~~~vSal~Ggla~~LP~~~F~~~af~f~~~~f~~~~~~sFy-------~GEal 81 (128)
T COG3312 10 KVARKLLLIQLLVVIVAAL-LFAVWQPQWGVSALLGGLAAFLPNCLFVLFAFRFRGQTFAKGRVASFY-------FGEAL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhccHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH-------HhHHH
Confidence 4567777777766555444 5555679999999999887653 2222111 111110 00011
Q ss_pred CCchHHHHHHHHHHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019487 275 QPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVS 330 (340)
Q Consensus 275 qpRLLVPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvqa~rdv~~ 330 (340)
+=++-.+.+++++.-|+. ..++|.++|+|. ++.++-.-+.+.
T Consensus 82 -KvilTivl~~vAf~~~~~----------~~fipl~vgyLl---~lvln~laPl~i 123 (128)
T COG3312 82 -KVILTLVLLVVAFAVLKA----------VLFIPLFVGYLL---VLVLNILAPLVI 123 (128)
T ss_pred -HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 112334455555666664 448899888875 555555555443
No 7
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=72.23 E-value=19 Score=34.49 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhH-hhhcccccccccCCCCCCchH
Q 019487 201 QSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV-DSMAAGAKGLMKGAVGQPRLL 279 (340)
Q Consensus 201 esm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsV-D~Lg~~~~g~~~galgqpRLL 279 (340)
.+...|..+=--++.+.+..++.++..++..++.....+.++|.+-|++.+.+ .|.+ -++.......-.....-+|++
T Consensus 10 ~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l-DR~ivss~~~~~~~~~~~~~~~~R~~ 88 (301)
T PF14362_consen 10 AERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL-DRFIVSSIRKSDGSRKRLLQALPRLL 88 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHHHhccccccchHHHHHHHHHHHH
Confidence 45667777766666666665555555556666777688888888888887643 2222 222110000000012356777
Q ss_pred HHHHHHHHHHHh
Q 019487 280 VPVVLVMIYNRW 291 (340)
Q Consensus 280 VPV~Lvv~a~rw 291 (340)
+-+++.++.+..
T Consensus 89 lAvliaivIs~p 100 (301)
T PF14362_consen 89 LAVLIAIVISEP 100 (301)
T ss_pred HHHHHHHHHHHH
Confidence 777666666653
No 8
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=67.33 E-value=19 Score=31.95 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=37.8
Q ss_pred hhhcccCCCCCHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhccC--HHHHHHHHHHHHHHHHHHHH
Q 019487 184 MFRELRKPRGDPEVLAAQSKEQYFKLKS-----KLQFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSLVYIRM 253 (340)
Q Consensus 184 ~~~~~~~~~~dpe~~aaesm~EY~~LK~-----~LLl~Tl~ig~vg~~~~~l~ys--~~~AlSyllGa~gGllYLrL 253 (340)
+.+++...+.+++. ..++..++++ ......++.+..+++++.++.+ .+..+++++|++++++...+
T Consensus 73 l~~~~~~~~~~~~e----a~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~ 145 (193)
T PF06738_consen 73 LSRRIVAGQLSLEE----AIERLDEIDREPPRYPPWLVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLL 145 (193)
T ss_pred HHHHHhcCCCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555553 3333444432 2344455555555555666544 78888889998888777664
No 9
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=62.02 E-value=29 Score=30.91 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019487 202 SKEQYFKLKSKLQFLTLG-----IGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDS 260 (340)
Q Consensus 202 sm~EY~~LK~~LLl~Tl~-----ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~ 260 (340)
++.|-.=||-.++.|-+= +|++.. ..+.....-++++.++|.+.||+++|++.+....
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~-~~~~~~e~~~~~~~~~g~~~g~~~~r~~~~~~~~ 130 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF-QLLFGSDLAALCGALLGGVGGFLLARGLSRKLAA 130 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666777778777766433 222222 2222334555667788999999999999988776
No 10
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=55.36 E-value=66 Score=27.95 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHhhhhh--h--c-cCHHHHHHHHHHHHHHHH----HHHHHHHhHhhh
Q 019487 203 KEQYFKLKSKLQFL--TLGIGGVGLVSAY--I--S-YSPEIAASFAAGLLGSLV----YIRMLGSTVDSM 261 (340)
Q Consensus 203 m~EY~~LK~~LLl~--Tl~ig~vg~~~~~--l--~-ys~~~AlSyllGa~gGll----YLrLL~rsVD~L 261 (340)
.+++.++|+.+... -++-.+.++.+.| . + ++.+.+.-.++|.++|++ =+.++.++...+
T Consensus 69 ~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 69 AQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666777766543 2222222333333 1 1 245666666666655554 334455554444
No 11
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=55.26 E-value=6.1 Score=38.23 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred ccccCCCCCCCccCCCCCCCCC
Q 019487 34 KILLPKKKSMKWSTGVAPGEYG 55 (340)
Q Consensus 34 ~~~~~~~k~~~w~~g~~pg~yg 55 (340)
...+|..++-.|=+|.-|||||
T Consensus 45 ~~w~Pg~~~P~~LdG~~pGD~G 66 (244)
T PLN00097 45 PTWLPGKAAAAHLDGSLPCDYG 66 (244)
T ss_pred cccCCCCCCccccCCCCCCCCC
Confidence 3567988999999999999998
No 12
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=53.84 E-value=35 Score=29.00 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh----hhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 019487 202 SKEQYFKLKSKLQFLTLGIGGVGL----VSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDS 260 (340)
Q Consensus 202 sm~EY~~LK~~LLl~Tl~ig~vg~----~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~ 260 (340)
+++|=.-+|..++.+-+=+.++.. +..+.....-.++..++|.+.|++++|++.|...+
T Consensus 61 ~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 61 EIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred EeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 444555667777776443333222 22222235566777788888888889988887765
No 13
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=52.36 E-value=74 Score=30.35 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccccccCCCCCCchHH
Q 019487 201 QSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLV 280 (340)
Q Consensus 201 esm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~~galgqpRLLV 280 (340)
|=-|||-.+-++.+..+.....+.-+..+++.+...- .-++|.+.-++|+++| |.-=-+ .+.+|.++.
T Consensus 32 ElVEEht~~akril~~~I~~ii~~~vlL~~~D~~P~~-~~l~si~s~~~Y~~~L-~~fP~i----------~ltsp~Fi~ 99 (211)
T PF04148_consen 32 ELVEEHTVLAKRILKRLIYFIIALHVLLLLFDGFPFW-LTLFSIFSHLVYLRNL-RTFPFI----------SLTSPSFIL 99 (211)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHh-CCCCee----------ecCCHHHHH
Confidence 5569999999999999888888877777777776665 4568999999999999 333222 256778888
Q ss_pred HHHHHH
Q 019487 281 PVVLVM 286 (340)
Q Consensus 281 PV~Lvv 286 (340)
-+++++
T Consensus 100 S~~lvi 105 (211)
T PF04148_consen 100 SCVLVI 105 (211)
T ss_pred HHHHHH
Confidence 777764
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=49.52 E-value=48 Score=32.84 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhhhhccCCcchhhhcccCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Q 019487 163 TRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFA 241 (340)
Q Consensus 163 Tr~e~~~w~ra~k~~~~~s~v~~~~~~~~~~dpe~~aaesm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyl 241 (340)
.|||+...+|+.+....+.+....+.+.+..|-+...++++ +|+...+.++++ .+..|+..+.-.|+||+
T Consensus 265 ~kR~~~~aqr~~~e~~~~~e~~~~~~ee~~ldl~~I~~Qsl--------rL~~~~l~~~~~-~~l~~iWsdll~a~s~L 334 (340)
T PF12794_consen 265 EKRAEALAQREAEEEESSEEGGAEEVEEPELDLEQISQQSL--------RLLRSILLLILL-VGLYWIWSDLLPAFSYL 334 (340)
T ss_pred HHHHHHHHhhhcccccCCccccCCCcCCcccCHHHHHHHHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 35566666666221112233233345666666666555543 344444444433 33345667888888886
No 15
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=46.24 E-value=71 Score=32.10 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHH
Q 019487 212 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 252 (340)
Q Consensus 212 ~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLr 252 (340)
.++..+++.+.+.++..|+..++.+++.+++|+++...|++
T Consensus 83 ~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~ 123 (309)
T COG4965 83 RLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777999999999999999998887765
No 16
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=45.21 E-value=61 Score=29.61 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=42.2
Q ss_pred HHhHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhccC-HHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019487 200 AQSKEQYFKLKSKLQFLTL-----GIGGVGLVSAYISYS-PEIAASFAAGLLGSLVYIRMLGSTVDSM 261 (340)
Q Consensus 200 aesm~EY~~LK~~LLl~Tl-----~ig~vg~~~~~l~ys-~~~AlSyllGa~gGllYLrLL~rsVD~L 261 (340)
+-+..||.=||..++.|-+ .++++.+ -+++.+ .-+++..++|.+.|++-+|-..|....-
T Consensus 66 eiGi~EkslL~sA~LvYi~PL~~l~v~~~La--~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 66 ELGIEEKSLLKSALLVYIFPLVGLFLGAILA--QYLFFSELIVIFGAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred EEccCcccHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3477888889988887743 3333322 344444 7778888999999999888888876654
No 17
>PRK08378 hypothetical protein; Provisional
Probab=43.94 E-value=85 Score=26.48 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc---cCHHHHHHHHH--HHHHHHHHHHHHHH
Q 019487 209 LKSKLQFLTLGIGGVGLVSAYIS---YSPEIAASFAA--GLLGSLVYIRMLGS 256 (340)
Q Consensus 209 LK~~LLl~Tl~ig~vg~~~~~l~---ys~~~AlSyll--Ga~gGllYLrLL~r 256 (340)
..+.|+......++.++.++.++ .-+++|+..+. .++.+.+||.-|.+
T Consensus 24 ~~rdLl~avi~~~~~sll~al~~~~L~APDVAltEAAVGAGlst~l~l~al~~ 76 (93)
T PRK08378 24 EWRDLLAAAVGMAAVSLFASLEFFMLQAPDVAMAEAAIGAALSTAVVIFAIKR 76 (93)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566666666666666555543 46999999887 57788888888765
No 18
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=40.95 E-value=33 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.785 Sum_probs=19.4
Q ss_pred ccccCCCCCCCccCCCCCCCCC
Q 019487 34 KILLPKKKSMKWSTGVAPGEYG 55 (340)
Q Consensus 34 ~~~~~~~k~~~w~~g~~pg~yg 55 (340)
...+|..++-.|-+|.-|||||
T Consensus 43 ~~w~p~~~~P~yLdG~lPGD~G 64 (262)
T PLN00048 43 QLWFASKQSLSYLDGTLPGDFG 64 (262)
T ss_pred ceecCCCCCccccCCCCCCccC
Confidence 3456999999999999999998
No 19
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=40.39 E-value=52 Score=33.15 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 019487 199 AAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSP-------EIAASFAAGLLGSLVYIRMLGST 257 (340)
Q Consensus 199 aaesm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~ys~-------~~AlSyllGa~gGllYLrLL~rs 257 (340)
.|+..++.++++.+|+.=.+.+..+..+.+.++-.. ...++..+|++.+++....+.|.
T Consensus 79 ~e~r~~~a~rlGnklFiPal~i~v~a~~~a~~~~~l~l~d~~~~tlv~lgig~i~Ali~a~~itk~ 144 (308)
T PF06166_consen 79 EEEREASAKRLGNKLFIPALLIPVVAVIGAQLFTKLPLLDPKNGTLVGLGIGAIVALIVALIITKP 144 (308)
T ss_pred HHHHHHHHHHhcCeehHHHHHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 346777889999999999999999988888866666 67888999999999888776553
No 20
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=39.31 E-value=1.2e+02 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=19.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHH
Q 019487 230 ISYSPEIAASFAAGLLGSLVYIRMLGS 256 (340)
Q Consensus 230 l~ys~~~AlSyllGa~gGllYLrLL~r 256 (340)
...+.+.-+|+++|.+.. +++-.++.
T Consensus 151 ~~~~~~~~~sfl~g~~~~-~wl~y~q~ 176 (205)
T PF07895_consen 151 SFISFQSLLSFLSGLLLL-MWLVYFQI 176 (205)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 346788999999999888 66666554
No 21
>TIGR03165 F1F0_chp_2 F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.
Probab=38.75 E-value=59 Score=26.84 Aligned_cols=70 Identities=27% Similarity=0.353 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcccccccccCCCCCCchHHH--------HHHHHHHHHhhccccCCccccchhH
Q 019487 235 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVP--------VVLVMIYNRWNEITVPEYGFLHLEL 306 (340)
Q Consensus 235 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~~galgqpRLLVP--------V~Lvv~a~rwn~i~~p~~g~~~LeL 306 (340)
+.+..+++|.+.|.+|..-|--.|-.+..+ .+|.+++. +++..++-- . +.+ ..-+
T Consensus 2 ~~~~~l~~G~~lG~~~F~gLw~tvr~~~~~---------~~Pa~l~~~S~llR~a~~l~gf~~l-----a-~~g--~~~l 64 (83)
T TIGR03165 2 TLLLALLAGFLLGAFFFGGLWWTVRKGLAS---------RRPALLFLGSLLLRTALVLAGFYFL-----A-RGG--WRRL 64 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------cCcHHHHHHHHHHHHHHHHHHHHHH-----H-cCC--HHHH
Confidence 357789999999999999999999998531 23333332 111111111 0 111 2558
Q ss_pred HHHHHHHHHHHHHHH
Q 019487 307 IPMLVGFFTYKIATF 321 (340)
Q Consensus 307 lP~llGFLTYK~AlL 321 (340)
+..++||+.-+..++
T Consensus 65 L~~~~GF~~aR~~~~ 79 (83)
T TIGR03165 65 LAALLGFFAARVLAV 79 (83)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999998776654
No 22
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=1.8e+02 Score=29.37 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=62.9
Q ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHhhhhhhccCHH----HHHHHHHHHHHHHHHHHHHHHhHhhh-ccc-cccccc
Q 019487 201 QSKEQYFKLKS----KLQFLTLGIGGVGLVSAYISYSPE----IAASFAAGLLGSLVYIRMLGSTVDSM-AAG-AKGLMK 270 (340)
Q Consensus 201 esm~EY~~LK~----~LLl~Tl~ig~vg~~~~~l~ys~~----~AlSyllGa~gGllYLrLL~rsVD~L-g~~-~~g~~~ 270 (340)
..-++|.+|=. .|+..|...|.+.+.. ...++. +.++-.+|+.++.+.=-...|+.|.+ ... .+...+
T Consensus 16 ~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 16 STIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred HHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCC
Confidence 45567777633 3444555444443332 223343 34455778889999999999999999 433 344556
Q ss_pred CCCCCCchHHHHHHHHHHHHhhccccCCccccchhHHHHHHHHHHHHHHHHHH
Q 019487 271 GAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQ 323 (340)
Q Consensus 271 galgqpRLLVPV~Lvv~a~rwn~i~~p~~g~~~LeLlP~llGFLTYK~AlLvq 323 (340)
|.+....-+..-.+..+++..-. . +-...+++++|+++.=.=+++|
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l------~-~~vn~laa~l~~~gi~~Yv~vY 139 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLL------W-FLVNLLAAVLGLFGIFFYVVVY 139 (304)
T ss_pred CccCHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHhhhh
Confidence 66665555554433333333211 0 1245677777776633333333
No 23
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=34.10 E-value=1.3e+02 Score=26.10 Aligned_cols=45 Identities=24% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhhccC-----HHHH-HHHHHHHHHHHHHHHHHHH
Q 019487 212 KLQFLTLGIGGVGLVSAYISYS-----PEIA-ASFAAGLLGSLVYIRMLGS 256 (340)
Q Consensus 212 ~LLl~Tl~ig~vg~~~~~l~ys-----~~~A-lSyllGa~gGllYLrLL~r 256 (340)
+=+++.++.|+++.+..|++.+ .|.| .+|++|+++++-|-|...+
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRR 92 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666543 3333 4788888999999887543
No 24
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=32.40 E-value=2.3e+02 Score=27.76 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhh---ccCHH-HHHHHHHHHHHHHHHHH
Q 019487 202 SKEQYFKLKSKLQFLTLGIGGVGLVSAYI---SYSPE-IAASFAAGLLGSLVYIR 252 (340)
Q Consensus 202 sm~EY~~LK~~LLl~Tl~ig~vg~~~~~l---~ys~~-~AlSyllGa~gGllYLr 252 (340)
..-.-.+++.++.+.++++.+++..+.|+ .|++. .-..|++| .+++.-.|
T Consensus 34 ~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llg-s~slymfr 87 (251)
T COG5415 34 SQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLG-SGSLYMFR 87 (251)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh-hhHHHHHH
Confidence 44455678888889999999998887777 34444 44455666 44443333
No 25
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=32.32 E-value=1.6e+02 Score=22.39 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHH
Q 019487 215 FLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 252 (340)
Q Consensus 215 l~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLr 252 (340)
.....++++.++..-+..+......+.+|.+.|++|.+
T Consensus 37 ~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~ 74 (91)
T PF02517_consen 37 WFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLR 74 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444455577777888888877764
No 26
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=32.23 E-value=72 Score=23.46 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Q 019487 210 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGL 244 (340)
Q Consensus 210 K~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa 244 (340)
|++++.+|.++..+..+.+.+++..+..+++++..
T Consensus 21 ~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~ 55 (57)
T PF00584_consen 21 RKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNL 55 (57)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888887777777777778888888777654
No 27
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=31.30 E-value=75 Score=35.15 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc-----cCHHHHHHHHHHHHHHHH--HHHHHHH
Q 019487 209 LKSKLQFLTLGIGGVGLVSAYIS-----YSPEIAASFAAGLLGSLV--YIRMLGS 256 (340)
Q Consensus 209 LK~~LLl~Tl~ig~vg~~~~~l~-----ys~~~AlSyllGa~gGll--YLrLL~r 256 (340)
|||+.......+.+++.+..++. .+.-++++|++|++.|.+ |+-|.-.
T Consensus 40 L~reYk~i~~~~vi~~~ll~~~~~~~~~~~~~taiaFliGa~~S~laGyiGM~vA 94 (682)
T PF03030_consen 40 LKREYKTIAIFIVIVAILLFFLLGFLGGQGWWTAIAFLIGALCSALAGYIGMRVA 94 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555444444444433333322 278999999999998865 7666543
No 28
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=30.69 E-value=1.9e+02 Score=27.67 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 019487 200 AQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISY 232 (340)
Q Consensus 200 aesm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~y 232 (340)
+.=.++|.+||.+=-.+|+.+..++...++++|
T Consensus 15 esLR~q~~~lr~rrrkyt~FL~~L~~~i~~~~y 47 (207)
T PF03907_consen 15 ESLRQQYLQLRARRRKYTFFLSLLCLWIAFFFY 47 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999988888888877777766666654
No 29
>PRK09917 hypothetical protein; Provisional
Probab=30.01 E-value=1.9e+02 Score=25.98 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccccccCCCCCCchHHHHHHHHHHHHhhcccc
Q 019487 217 TLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITV 296 (340)
Q Consensus 217 Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~~galgqpRLLVPV~Lvv~a~rwn~i~~ 296 (340)
...++++||...+=.-....-.+-+.|+++=.+|+.++.-.++..-. ..++ -+.+= ++....+||.....
T Consensus 16 ~a~ia~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~~~~~a-------sfia--a~~ig-l~s~~~Ar~~k~P~ 85 (157)
T PRK09917 16 LAAIPAVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGLNIEWS-------TFMA--SMLVG-TIGIQWSRWYLAHP 85 (157)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-------HHHH--HHHHH-HHHHHHHHHhCCCC
Confidence 34444555555544445566667778888889999765322322210 0000 01111 23334456654222
Q ss_pred CCccccchhHHHHHHHHHHHHHH
Q 019487 297 PEYGFLHLELIPMLVGFFTYKIA 319 (340)
Q Consensus 297 p~~g~~~LeLlP~llGFLTYK~A 319 (340)
.-|-+ --++|++=|...|+.-
T Consensus 86 tvf~i--p~iiPLVPG~~~Y~~m 106 (157)
T PRK09917 86 KVFTV--AAVIPMFPGISAYTAM 106 (157)
T ss_pred EEeeH--hhHHhcCCCHHHHHHH
Confidence 22322 4577888888888854
No 30
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=29.22 E-value=65 Score=26.02 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 019487 209 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 251 (340)
Q Consensus 209 LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYL 251 (340)
|-.-|...++++++-+..+.+++-+.-.-+.+.+|...|.+|-
T Consensus 26 l~~~l~k~~~G~~~G~~~s~l~frrR~~pv~lG~G~G~G~aY~ 68 (75)
T PF04418_consen 26 LSDTLVKTGLGFGIGVVFSLLFFRRRAWPVALGAGFGIGMAYS 68 (75)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHccchHHHHhhcccccchhHH
Confidence 4445555666666666666666777777777788888888884
No 31
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=28.98 E-value=82 Score=23.92 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Q 019487 210 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 243 (340)
Q Consensus 210 K~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllG 243 (340)
|+++..+|+.+.++..+.+.+++..+..+.++++
T Consensus 29 ~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~ 62 (64)
T PRK07597 29 RKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS 62 (64)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877777788888888877765
No 32
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.51 E-value=1.1e+02 Score=27.60 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 019487 220 IGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 251 (340)
Q Consensus 220 ig~vg~~~~~l~ys~~~AlSyllGa~gGllYL 251 (340)
+++++++..++.++...-++.++|++++++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 17 IAAITFLVSFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444455555566677777777777766643
No 33
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=27.83 E-value=4.6e+02 Score=25.39 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019487 202 SKEQYFKLKSKLQFLTLGIGGVGLVSAY 229 (340)
Q Consensus 202 sm~EY~~LK~~LLl~Tl~ig~vg~~~~~ 229 (340)
-|.||.+|-+-+++.+..+..++....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (400)
T PRK11646 3 RVSQARNLGKYFLLIDNMLVVLGFFVVF 30 (400)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 3678999988888877766666544433
No 34
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=27.77 E-value=2.4e+02 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=20.5
Q ss_pred hhccCHHHHHHHHHHHHHHHH--HHHHHH
Q 019487 229 YISYSPEIAASFAAGLLGSLV--YIRMLG 255 (340)
Q Consensus 229 ~l~ys~~~AlSyllGa~gGll--YLrLL~ 255 (340)
++..+..++++|++|++.|.+ |+-|.-
T Consensus 50 ~~~~~~~~~~~Fl~Ga~~S~laG~iGM~i 78 (666)
T PRK00733 50 GLFLGWLTAVAFLVGAVFSALAGYIGMRV 78 (666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999998875 666643
No 35
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=27.00 E-value=94 Score=23.07 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH
Q 019487 210 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 243 (340)
Q Consensus 210 K~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllG 243 (340)
|+++..+|+.+..+..+.+.+++..+..+++++.
T Consensus 20 ~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~ 53 (55)
T TIGR00964 20 RKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS 53 (55)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888877777777777888877777653
No 36
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=27.00 E-value=2.9e+02 Score=21.68 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--cc-CHHHHHHH-HHHH-HHHHHHHHHHHH
Q 019487 210 KSKLQFLTLGIGGVGLVSAYI--SY-SPEIAASF-AAGL-LGSLVYIRMLGS 256 (340)
Q Consensus 210 K~~LLl~Tl~ig~vg~~~~~l--~y-s~~~AlSy-llGa-~gGllYLrLL~r 256 (340)
.++++..-..+|.+|+..+.+ .+ -++.|+.. ++|+ +..++|+.-|.|
T Consensus 14 ~~~~l~avi~~~~~g~~~al~f~~l~APDVAlTe~~Vg~gl~~~l~~~al~~ 65 (70)
T PF13244_consen 14 SRSRLAAVIALGVFGFLIALLFVLLGAPDVALTEAAVGTGLTTVLFLLALRK 65 (70)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555555566555554443 34 48999875 5788 888888877765
No 37
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=26.44 E-value=95 Score=33.98 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019487 209 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 248 (340)
Q Consensus 209 LK~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGl 248 (340)
|.|+-.....+...+.++.+|+..+.++|+.|++|++.|-
T Consensus 52 L~rqy~tiavv~ivva~ll~~~l~~~~ta~~Fl~GAv~S~ 91 (703)
T COG3808 52 LARQYKTIAVVGIVVAILLAWFLLSWLTAIGFLLGAVLSA 91 (703)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3343333333333556667777888999999999998664
No 38
>COG4818 Predicted membrane protein [Function unknown]
Probab=25.55 E-value=66 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 019487 233 SPEIAASFAAGLLGSLVYIRM 253 (340)
Q Consensus 233 s~~~AlSyllGa~gGllYLrL 253 (340)
+.+.|+||++|-+.|+++|.|
T Consensus 4 NiegaLCY~lgwitGllFlll 24 (105)
T COG4818 4 NIEGALCYLLGWITGLLFLLL 24 (105)
T ss_pred hhhhHHHHHHHHHHHHHHHHh
Confidence 346799999999999999865
No 39
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.18 E-value=1.1e+02 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 019487 237 AASFAAGLLGSLVY 250 (340)
Q Consensus 237 AlSyllGa~gGllY 250 (340)
.+|+.+|++.|++|
T Consensus 38 lIs~viGilLG~~~ 51 (93)
T PF06946_consen 38 LISVVIGILLGAAA 51 (93)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555554
No 40
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=24.82 E-value=2.3e+02 Score=24.19 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=40.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----------cCHHHHHHHHHHHHHHHHHHHHHH
Q 019487 199 AAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYIS-----------YSPEIAASFAAGLLGSLVYIRMLG 255 (340)
Q Consensus 199 aaesm~EY~~LK~~LLl~Tl~ig~vg~~~~~l~-----------ys~~~AlSyllGa~gGllYLrLL~ 255 (340)
+--+.+||.+=+.+-+...+.--.+|++.+|+. .-.+.-+|.++|.++|+.=-|.=.
T Consensus 13 khPG~~~Ya~CqS~Af~kG~~tFv~G~~~~f~~Q~~iqrrlpYp~q~~~LVS~v~~sv~sY~vT~~et 80 (94)
T PF15110_consen 13 KHPGLQEYAACQSRAFMKGLFTFVLGTGATFFLQKAIQRRLPYPFQWNILVSVVVASVASYQVTRVET 80 (94)
T ss_dssp HS-SHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHTTSSSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCCchhHHHHHHhhhhhhhhhhHHH
Confidence 345889999988887777666555667666664 357888899999999887655433
No 41
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=24.70 E-value=2.5e+02 Score=29.65 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=33.4
Q ss_pred HHHHHHHHH--HHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHH
Q 019487 213 LQFLTLGIG--GVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGS 256 (340)
Q Consensus 213 LLl~Tl~ig--~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~r 256 (340)
.+++|+.+. ..+.++..+||+.+....+++.+++.++-+.+|.|
T Consensus 162 vFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~ 207 (438)
T PRK14856 162 VFLITLAVADDLGAIVVIALFYTTNLKFAWLLGALGVVLVLAVLNR 207 (438)
T ss_pred HHHHHHHHHHHhhhHhheeeecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 455566554 33334456789999999999999999999988865
No 42
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.63 E-value=2e+02 Score=22.93 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHH-HhhhhhhccCHHH-HHHHHHHHHHHH
Q 019487 211 SKLQFLTLGIGGV-GLVSAYISYSPEI-AASFAAGLLGSL 248 (340)
Q Consensus 211 ~~LLl~Tl~ig~v-g~~~~~l~ys~~~-AlSyllGa~gGl 248 (340)
++++...+.++++ ++++.|+..+... -..|++|.+..+
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333 4455566656433 344555554443
No 43
>COG0344 Predicted membrane protein [Function unknown]
Probab=24.35 E-value=79 Score=29.97 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHH-HhHhhhcccccc
Q 019487 236 IAASFAAGLL-GSLVYIRMLG-STVDSMAAGAKG 267 (340)
Q Consensus 236 ~AlSyllGa~-gGllYLrLL~-rsVD~Lg~~~~g 267 (340)
.+++|++|++ .|+++.|++. .++...|+++-|
T Consensus 9 l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~G 42 (200)
T COG0344 9 LLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPG 42 (200)
T ss_pred HHHHHHhcchhHHHHHHHHhCCCCccccCCCCCC
Confidence 3566999987 6899999998 999999887654
No 44
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=23.80 E-value=1.2e+02 Score=29.68 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=15.9
Q ss_pred cccCCCCCCCccCCCCCCCCC
Q 019487 35 ILLPKKKSMKWSTGVAPGEYG 55 (340)
Q Consensus 35 ~~~~~~k~~~w~~g~~pg~yg 55 (340)
..+|--++-.|-+|.-|||||
T Consensus 55 ~W~P~~~~P~~LdG~~PGD~G 75 (250)
T PLN00101 55 EWLPGLASPGYLNGSLPGDNG 75 (250)
T ss_pred ccCCCCCCCcccCCCCCCccC
Confidence 456766666788888888887
No 45
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=23.39 E-value=2.4e+02 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=14.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Q 019487 231 SYSPEIAASFAAGLLGSLVYIRM 253 (340)
Q Consensus 231 ~ys~~~AlSyllGa~gGllYLrL 253 (340)
+++...-.+++.+++.|+...++
T Consensus 153 ~~~~~~~~~~l~aillg~~~~~~ 175 (485)
T PLN03199 153 FYSDRFAMHIASALLLGLFFQQC 175 (485)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHH
Confidence 33445555666777777776664
No 46
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=23.07 E-value=1.1e+02 Score=29.93 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=17.5
Q ss_pred cccCCCCCCCccCCCCCCCCC
Q 019487 35 ILLPKKKSMKWSTGVAPGEYG 55 (340)
Q Consensus 35 ~~~~~~k~~~w~~g~~pg~yg 55 (340)
..+|--++-.|=+|.-|||||
T Consensus 37 ~W~P~~~~P~~Ldg~~pGd~G 57 (246)
T PLN00100 37 MWYPGATAPKYLDGTMAGDYG 57 (246)
T ss_pred ccCCCCCCCCCCCCCCCCCcC
Confidence 456877777889999999997
No 47
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=23.06 E-value=4.3e+02 Score=23.65 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHH
Q 019487 202 SKEQYFKLKSKLQFL 216 (340)
Q Consensus 202 sm~EY~~LK~~LLl~ 216 (340)
-.++|++|+.+.+..
T Consensus 9 rK~K~e~l~k~~~~~ 23 (130)
T PF10864_consen 9 RKEKWERLKKQHLFW 23 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788887776654
No 48
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=2.2e+02 Score=27.55 Aligned_cols=65 Identities=23% Similarity=0.176 Sum_probs=38.3
Q ss_pred hhhhcccCCCCCHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHhhhhhhccC--HHHHHHHHHHHHHHH
Q 019487 183 VMFRELRKPRGDPEVLAAQSKEQY--FKLKSKLQFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSL 248 (340)
Q Consensus 183 v~~~~~~~~~~dpe~~aaesm~EY--~~LK~~LLl~Tl~ig~vg~~~~~l~ys--~~~AlSyllGa~gGl 248 (340)
.+.+.+...+.|.|..++ .+++= ..++..-.+..++.+.+|...+.++.| .+...+|..|.++++
T Consensus 94 ~i~~~v~~~~~~~e~a~~-~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~l~gG~w~d~~iaf~~~~~~~~ 162 (250)
T COG2966 94 RISRAVEHGRLDLEEAHK-KLDEIQKQPLRYSRWLVLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFL 162 (250)
T ss_pred HHHHHHHcCCCCHHHHHH-HHHHhhhCccccccHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 355566666777765332 22222 444566667788888888888888774 344445555554443
No 49
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=22.38 E-value=2.8e+02 Score=28.08 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHH
Q 019487 192 RGDPEVLAAQSKEQYFKLKSKLQFLTL 218 (340)
Q Consensus 192 ~~dpe~~aaesm~EY~~LK~~LLl~Tl 218 (340)
|+=-++.+...++||.+|-+-.|...=
T Consensus 182 ReVv~VlK~KD~edY~rlg~l~LkiNK 208 (313)
T PF14476_consen 182 REVVEVLKRKDEEDYLRLGNLALKINK 208 (313)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 334567778899999999887776643
No 50
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=21.57 E-value=62 Score=32.80 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019487 232 YSPEIAASFAAGLLGSLVYIRMLGSTVD 259 (340)
Q Consensus 232 ys~~~AlSyllGa~gGllYLrLL~rsVD 259 (340)
+....=.++.+|...|+.|||..+++-.
T Consensus 195 ~~f~~l~s~~~g~~~sWtYLRfyq~h~~ 222 (326)
T KOG2890|consen 195 LVFASLPSITFGVLVSWTYLRFYQRHPT 222 (326)
T ss_pred HHhhhhHHHHHhhhhhhhhheecccCCc
Confidence 4445557899999999999999999983
No 51
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=21.50 E-value=1.4e+02 Score=23.70 Aligned_cols=49 Identities=12% Similarity=-0.045 Sum_probs=34.6
Q ss_pred CHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Q 019487 194 DPEVLAAQSKEQYFKL----KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAA 242 (340)
Q Consensus 194 dpe~~aaesm~EY~~L----K~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyll 242 (340)
++...-.+..+|..+. ++++..+|+.+-.+.++.+.++++.+..+..++
T Consensus 19 ~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i 71 (73)
T COG0690 19 KFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLV 71 (73)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445666666664 778888898888888888888888877766553
No 52
>PLN02975 complex I subunit
Probab=20.98 E-value=1.4e+02 Score=25.43 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhhcc------CHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019487 219 GIGGVGLVSAYISY------SPEIAASFAAGLLGSLVYIRMLGSTVDSM 261 (340)
Q Consensus 219 ~ig~vg~~~~~l~y------s~~~AlSyllGa~gGllYLrLL~rsVD~L 261 (340)
+++++++...|++. .+-.-++-+||.+||++|.. ++|-.++
T Consensus 36 ~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aY--q~S~~Rf 82 (97)
T PLN02975 36 TITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAY--QNSAGRL 82 (97)
T ss_pred HHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhh--cccchhh
Confidence 44444455455543 56777888899999998853 4554444
Done!