Query 019487
Match_columns 340
No_of_seqs 104 out of 120
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 42.6 59 0.002 34.7 7.9 36 219-254 68-105 (735)
2 3dl8_C SECE; RECA-type ATPase 40.7 20 0.0007 26.6 3.0 39 210-248 23-61 (65)
3 2wsc_1 AT3G54890, LHCA1; photo 25.8 20 0.00068 33.2 0.9 20 36-55 48-67 (241)
4 3din_D Preprotein translocase 23.2 17 0.00057 27.0 -0.1 38 211-248 24-61 (65)
5 2zjs_E Preprotein translocase 23.0 10 0.00035 27.6 -1.3 35 211-245 25-59 (60)
6 4ezc_A UREA transporter 1; mem 22.1 1.8E+02 0.0062 28.5 7.0 45 221-265 72-116 (384)
7 2kmu_A ATP-dependent DNA helic 18.9 1.4E+02 0.0047 21.9 4.1 41 163-212 9-53 (56)
8 2bhw_A Chlorophyll A-B binding 17.8 93 0.0032 28.4 3.6 15 41-55 31-45 (232)
9 3lto_A Mevalonate diphosphate 16.1 34 0.0012 32.5 0.2 16 58-73 8-23 (323)
10 1jeg_B Hematopoietic cell prot 14.7 83 0.0029 20.1 1.7 20 17-37 3-22 (26)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=42.65 E-value=59 Score=34.74 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhhccCHHHHHHHHHHHHHHHH--HHHHH
Q 019487 219 GIGGVGLVSAYISYSPEIAASFAAGLLGSLV--YIRML 254 (340)
Q Consensus 219 ~ig~vg~~~~~l~ys~~~AlSyllGa~gGll--YLrLL 254 (340)
.++++.++..+++.+..++++|++|++.|.+ |+-|-
T Consensus 68 ~~~vv~~~ll~~~~~~~~ai~Fl~Ga~~S~~aGyiGM~ 105 (735)
T 4av3_A 68 KVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMK 105 (735)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667899999999999998876 55553
No 2
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=40.71 E-value=20 Score=26.55 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019487 210 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 248 (340)
Q Consensus 210 K~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGl 248 (340)
|+++..+|+++.++..+.+.+++..+..+++++..+-|+
T Consensus 23 r~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 23 RELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888887777777777788888877777655443
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=25.78 E-value=20 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=6.5
Q ss_pred ccCCCCCCCccCCCCCCCCC
Q 019487 36 LLPKKKSMKWSTGVAPGEYG 55 (340)
Q Consensus 36 ~~~~~k~~~w~~g~~pg~yg 55 (340)
.+|--.+-.+-+|..|||||
T Consensus 48 w~P~~~~P~~L~G~~pgd~g 67 (241)
T 2wsc_1 48 WMPGEPRPAYLDGSAPGDFG 67 (241)
T ss_dssp -------------CTTSSCC
T ss_pred cCCCCCCcccccCCCCCcCC
Confidence 46765555788899999998
No 4
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=23.21 E-value=17 Score=27.01 Aligned_cols=38 Identities=8% Similarity=-0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Q 019487 211 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 248 (340)
Q Consensus 211 ~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGl 248 (340)
+++..+|+++.++..+.+.+++..+..+++++..+-|+
T Consensus 24 ~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 24 KELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777788888888777665544
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=22.99 E-value=10 Score=27.65 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Q 019487 211 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLL 245 (340)
Q Consensus 211 ~~LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~ 245 (340)
+++..+|+++.++..+.+.+++..+..+++++..+
T Consensus 25 ~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 25 EQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777776777777777777766543
No 6
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=22.09 E-value=1.8e+02 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc
Q 019487 221 GGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA 265 (340)
Q Consensus 221 g~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~ 265 (340)
+++++..+.+..++..|+..++|++.|.+--++|+.+-+.+..|.
T Consensus 72 sGlliLigl~i~sp~~al~allG~~vstltA~llg~~~~~I~~GL 116 (384)
T 4ezc_A 72 SGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQDRSAITAGL 116 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHcch
Confidence 344444455568999999999999999999999998888775543
No 7
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=18.87 E-value=1.4e+02 Score=21.92 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhhhhccCC----cchhhhcccCCCCCHHHHHHHhHHHHHHHHHH
Q 019487 163 TRREQDKWDKATKAATGG----SDVMFRELRKPRGDPEVLAAQSKEQYFKLKSK 212 (340)
Q Consensus 163 Tr~e~~~w~ra~k~~~~~----s~v~~~~~~~~~~dpe~~aaesm~EY~~LK~~ 212 (340)
-|.|-..|+++=++..++ .|+ ..||+..+ +--.+|.+||..
T Consensus 9 lk~~LK~WE~~F~~~~GRkP~k~DI--------k~~p~~I~-~~YK~Y~~Lk~~ 53 (56)
T 2kmu_A 9 VRERLQAWERAFRRQRGRRPSQDDV--------EAAPEETR-ALYREYRTLKRT 53 (56)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCHHHH--------TTSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHH--------HcCHHHHH-HHHHHHHHHHhc
Confidence 367889999997776543 333 56887323 466899999975
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=17.79 E-value=93 Score=28.41 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=12.5
Q ss_pred CCCCccCCCCCCCCC
Q 019487 41 KSMKWSTGVAPGEYG 55 (340)
Q Consensus 41 k~~~w~~g~~pg~yg 55 (340)
.+-.+-+|.-|||||
T Consensus 31 ~~P~~LdG~~pGD~G 45 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYG 45 (232)
T ss_dssp SCCTTCCSCSTTCCS
T ss_pred CCccccCCcCCCCCC
Confidence 445788999999999
No 9
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=16.05 E-value=34 Score=32.48 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.9
Q ss_pred CCccccccccCCCCCC
Q 019487 58 PTTTKLRKFWGGEKED 73 (340)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (340)
|++.-+-||||+.|++
T Consensus 8 ~~nialiKYwGk~d~~ 23 (323)
T 3lto_A 8 PANIALIKYMGKKDEN 23 (323)
T ss_dssp EEEEEEECCTTCBCTT
T ss_pred cchhHHhHhcCccccc
Confidence 6778899999999887
No 10
>1jeg_B Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP; SH3 domain, protein-peptide complex, kinase, transferase/hydrolase complex; NMR {Mus musculus}
Probab=14.70 E-value=83 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q 019487 17 SQDSSSTSSSVPTTRPTKILL 37 (340)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (340)
.+|..+ +++.|.+++.++||
T Consensus 3 ~~d~~~-Ppplp~rtpesfil 22 (26)
T 1jeg_B 3 RTDDEI-PPPLPERTPESFIV 22 (26)
T ss_pred ccccCC-CCCccccCcchhee
Confidence 455554 66668888888776
Done!