Query 019487
Match_columns 340
No_of_seqs 104 out of 120
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 16:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019487.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019487hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 29.3 6.7 0.00049 33.0 0.6 25 36-76 11-37 (218)
2 d1fi4a1 d.14.1.5 (A:3-190) Mev 16.0 14 0.001 30.7 -0.1 16 58-73 9-24 (188)
3 d2co5a1 a.4.5.48 (A:5-93) STIV 9.2 39 0.0029 24.7 0.5 31 182-212 53-83 (89)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.0 2.5E+02 0.018 23.6 5.9 31 301-331 51-81 (248)
5 d1vi0a2 a.121.1.1 (A:78-194) H 7.5 3.2E+02 0.024 18.3 5.5 25 232-256 70-94 (117)
6 d2nrka1 d.218.1.14 (A:4-170) H 7.1 1E+02 0.0073 24.3 2.2 15 201-215 123-137 (167)
7 d1l7va_ f.22.1.1 (A:) ABC tran 5.6 2.7E+02 0.02 23.9 4.5 22 204-225 226-247 (324)
8 d1v54j_ f.23.4.1 (J:) Mitochon 5.0 1.9E+02 0.014 19.8 2.4 19 212-230 30-48 (58)
9 d1bdsa_ g.9.1.1 (A:) BDs-I def 5.0 1.2E+02 0.009 19.3 1.2 11 46-56 18-28 (43)
10 d1m1la_ d.260.1.1 (A:) Suppres 4.9 1.4E+02 0.01 25.2 1.9 14 61-76 29-43 (236)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=29.32 E-value=6.7 Score=32.98 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred ccC--CCCCCCccCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 019487 36 LLP--KKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLT 76 (340)
Q Consensus 36 ~~~--~~k~~~w~~g~~pg~ygg~p~~~~~~~~~~~~~~dp~~ 76 (340)
.|| ..++-.|-.|.-||||| +||+.
T Consensus 11 ~~~~~~~~~P~~LdGs~pGD~G----------------FDPLg 37 (218)
T d1rwta_ 11 YLGPFSGESPSYLTGEFPGDYG----------------WDTAG 37 (218)
T ss_dssp TTGGGGCSCCTTCCSCSTTCCS----------------CCTTC
T ss_pred cCCccccCCCcccCCCCCCCCC----------------cCCcc
Confidence 455 44555899999999999 79999
No 2
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.99 E-value=14 Score=30.67 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.5
Q ss_pred CCccccccccCCCCCC
Q 019487 58 PTTTKLRKFWGGEKED 73 (340)
Q Consensus 58 p~~~~~~~~~~~~~~d 73 (340)
|.+.-+=||||+-+++
T Consensus 9 psNIALiKYWGK~d~~ 24 (188)
T d1fi4a1 9 PVNIATLKYWGKRDTK 24 (188)
T ss_dssp CCEEEEECCCCEEETT
T ss_pred cCcEEEEEeccccCcc
Confidence 7788899999997655
No 3
>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}
Probab=9.24 E-value=39 Score=24.66 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred chhhhcccCCCCCHHHHHHHhHHHHHHHHHH
Q 019487 182 DVMFRELRKPRGDPEVLAAQSKEQYFKLKSK 212 (340)
Q Consensus 182 ~v~~~~~~~~~~dpe~~aaesm~EY~~LK~~ 212 (340)
+.++||-+.+++.---+.+.+|.||++|..-
T Consensus 53 dkilreeeapdgkvlfltekgmkefeelhef 83 (89)
T d2co5a1 53 DKILREEEAPDGKVLFLTEKGMKEFEELHEF 83 (89)
T ss_dssp TTSEEEECCTTSCEEEECHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCceEEEEehhhhHHHHHHHHH
Confidence 5677887777777666778899999998753
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.97 E-value=2.5e+02 Score=23.60 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=24.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019487 301 FLHLELIPMLVGFFTYKIATFFQAVEEAVSI 331 (340)
Q Consensus 301 ~~~LeLlP~llGFLTYK~AlLvqa~rdv~~~ 331 (340)
....-++|++++++++-+--+++++.-.+..
T Consensus 51 ~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTN 81 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGLFVLFPLVCTIAIAFTN 81 (248)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHHGGGBC
T ss_pred cceehhhhHHHHHHHHHHHhheeEEEEEEEE
Confidence 3357799999999999988888887766543
No 5
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=7.51 E-value=3.2e+02 Score=18.29 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Q 019487 232 YSPEIAASFAAGLLGSLVYIRMLGS 256 (340)
Q Consensus 232 ys~~~AlSyllGa~gGllYLrLL~r 256 (340)
.+++.+...++|++.+++|--++..
T Consensus 70 ~d~~~~a~~i~g~i~~~~~~w~~~~ 94 (117)
T d1vi0a2 70 LDVRLARQMIFGTIDETVTTWVMND 94 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4889999999999999998666643
No 6
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=7.08 E-value=1e+02 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHH
Q 019487 201 QSKEQYFKLKSKLQF 215 (340)
Q Consensus 201 esm~EY~~LK~~LLl 215 (340)
+..++|.+||++|..
T Consensus 123 ~~~~~Y~~lK~~la~ 137 (167)
T d2nrka1 123 AIATTYGTLKKQLAQ 137 (167)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999854
No 7
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=2.7e+02 Score=23.86 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019487 204 EQYFKLKSKLQFLTLGIGGVGL 225 (340)
Q Consensus 204 ~EY~~LK~~LLl~Tl~ig~vg~ 225 (340)
-++.+.|..++..+..++++..
T Consensus 226 v~v~~~r~~~l~~~~ll~a~~v 247 (324)
T d1l7va_ 226 LPLWFWRNVLVAATGWMVGVSV 247 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4577888888877666665443
No 8
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.02 E-value=1.9e+02 Score=19.76 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 019487 212 KLQFLTLGIGGVGLVSAYI 230 (340)
Q Consensus 212 ~LLl~Tl~ig~vg~~~~~l 230 (340)
-|...|.+++++|++++..
T Consensus 30 ~LYr~Tm~L~~~G~~~s~~ 48 (58)
T d1v54j_ 30 ILYRVTMTLCLGGTLYSLY 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566788888777766543
No 9
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.95 E-value=1.2e+02 Score=19.34 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=9.1
Q ss_pred cCCCCCCCCCC
Q 019487 46 STGVAPGEYGG 56 (340)
Q Consensus 46 ~~g~~pg~ygg 56 (340)
-.|+-||.||=
T Consensus 18 lrgtcpggygy 28 (43)
T d1bdsa_ 18 LRGTCPGGYGY 28 (43)
T ss_dssp SCSSCCTTTCC
T ss_pred EecccCCCccc
Confidence 37999999984
No 10
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.86 E-value=1.4e+02 Score=25.24 Aligned_cols=14 Identities=57% Similarity=1.293 Sum_probs=10.0
Q ss_pred ccccccc-CCCCCCCCC
Q 019487 61 TKLRKFW-GGEKEDPLT 76 (340)
Q Consensus 61 ~~~~~~~-~~~~~dp~~ 76 (340)
+-+.||| ||+ |||.
T Consensus 29 ~~~~~~~lGG~--dpLD 43 (236)
T d1m1la_ 29 TAIVKYWLGGP--DPLD 43 (236)
T ss_dssp ECSSCGGGTCS--CSCS
T ss_pred cceeeeccCCC--CCCC
Confidence 3456899 775 7887
Done!