Query 019490
Match_columns 340
No_of_seqs 135 out of 1263
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 2.6E-43 5.6E-48 332.6 19.8 268 20-324 176-449 (449)
2 KOG1303 Amino acid transporter 100.0 7.2E-39 1.6E-43 306.8 21.3 277 20-326 159-436 (437)
3 PLN03074 auxin influx permease 100.0 6.7E-38 1.5E-42 305.9 21.3 280 20-337 167-464 (473)
4 PTZ00206 amino acid transporte 100.0 1.5E-37 3.4E-42 304.2 19.4 275 24-325 183-465 (467)
5 PF01490 Aa_trans: Transmembra 100.0 1E-35 2.3E-40 287.2 1.4 279 20-321 121-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 2.8E-33 6.1E-38 251.2 -1.1 293 15-333 230-523 (524)
7 KOG1305 Amino acid transporter 100.0 3.8E-30 8.2E-35 245.5 19.4 278 22-327 126-408 (411)
8 COG0814 SdaC Amino acid permea 99.7 7.2E-15 1.6E-19 142.0 21.5 269 21-318 126-409 (415)
9 TIGR00837 araaP aromatic amino 99.0 2.4E-08 5.1E-13 95.9 16.9 234 23-292 114-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.5 1.8E-05 3.9E-10 76.3 20.2 171 96-293 182-366 (394)
11 PRK10483 tryptophan permease; 98.3 6.1E-05 1.3E-09 72.6 18.6 168 99-292 193-373 (414)
12 PRK15132 tyrosine transporter 98.2 4E-05 8.6E-10 73.9 14.7 169 100-293 183-363 (403)
13 PRK09664 tryptophan permease T 98.2 0.00026 5.5E-09 68.3 19.4 169 99-292 194-374 (415)
14 TIGR03813 put_Glu_GABA_T putat 98.0 0.00056 1.2E-08 67.7 19.5 47 106-155 202-248 (474)
15 KOG1287 Amino acid transporter 97.9 0.00073 1.6E-08 65.7 16.0 181 96-294 202-388 (479)
16 PRK11021 putative transporter; 97.8 0.0033 7.1E-08 61.0 20.3 57 96-155 175-231 (410)
17 PRK13629 threonine/serine tran 97.8 0.0011 2.3E-08 64.3 16.4 201 99-312 210-434 (443)
18 PRK10655 potE putrescine trans 97.8 0.0032 6.9E-08 61.6 19.9 56 98-156 189-244 (438)
19 TIGR00814 stp serine transport 97.8 0.0011 2.4E-08 64.0 16.1 180 97-289 185-376 (397)
20 PRK10249 phenylalanine transpo 97.8 0.0038 8.2E-08 61.6 19.8 55 97-154 208-262 (458)
21 PRK15049 L-asparagine permease 97.7 0.0038 8.2E-08 62.3 19.2 56 97-155 219-274 (499)
22 TIGR03810 arg_ornith_anti argi 97.7 0.0055 1.2E-07 60.5 20.1 59 98-160 195-253 (468)
23 PRK10197 gamma-aminobutyrate t 97.7 0.0044 9.5E-08 60.9 19.2 56 97-155 180-235 (446)
24 PRK10644 arginine:agmatin anti 97.6 0.0098 2.1E-07 58.3 20.5 56 97-155 190-245 (445)
25 PRK10746 putative transport pr 97.6 0.0096 2.1E-07 58.8 20.4 55 97-154 199-253 (461)
26 PRK10238 aromatic amino acid t 97.6 0.0056 1.2E-07 60.3 18.3 53 97-152 199-251 (456)
27 TIGR00913 2A0310 amino acid pe 97.6 0.012 2.6E-07 58.3 20.6 55 97-154 196-250 (478)
28 TIGR00910 2A0307_GadC glutamat 97.6 0.0071 1.5E-07 60.4 18.6 50 101-153 197-246 (507)
29 PRK10435 cadB lysine/cadaverin 97.5 0.011 2.4E-07 57.8 19.6 59 96-157 185-243 (435)
30 TIGR00911 2A0308 L-type amino 97.5 0.0057 1.2E-07 61.0 17.6 57 96-155 233-289 (501)
31 PRK11357 frlA putative fructos 97.5 0.0095 2.1E-07 58.4 18.5 56 97-155 194-249 (445)
32 TIGR00906 2A0303 cationic amin 97.5 0.0084 1.8E-07 60.6 18.2 56 97-155 230-285 (557)
33 TIGR00909 2A0306 amino acid tr 97.5 0.019 4.2E-07 55.8 20.1 58 97-157 194-251 (429)
34 PF13520 AA_permease_2: Amino 97.4 0.0065 1.4E-07 59.0 16.5 58 100-162 190-247 (426)
35 TIGR00905 2A0302 transporter, 97.4 0.025 5.5E-07 55.9 20.4 55 97-155 198-252 (473)
36 PRK11387 S-methylmethionine tr 97.4 0.02 4.3E-07 56.6 19.5 56 97-155 205-260 (471)
37 PRK11049 D-alanine/D-serine/gl 97.4 0.026 5.5E-07 55.8 20.1 56 98-156 211-266 (469)
38 TIGR00907 2A0304 amino acid pe 97.4 0.023 4.9E-07 56.3 19.3 50 99-151 218-267 (482)
39 PRK10580 proY putative proline 97.3 0.059 1.3E-06 53.0 21.0 53 98-153 199-251 (457)
40 TIGR00908 2A0305 ethanolamine 97.2 0.03 6.5E-07 54.8 18.2 55 97-154 190-244 (442)
41 TIGR01773 GABAperm gamma-amino 97.2 0.038 8.2E-07 54.3 19.0 56 97-155 200-255 (452)
42 PRK15238 inner membrane transp 97.2 0.057 1.2E-06 53.8 20.0 54 98-154 211-264 (496)
43 PRK10836 lysine transporter; P 97.0 0.12 2.6E-06 51.4 20.6 55 98-155 205-259 (489)
44 TIGR00930 2a30 K-Cl cotranspor 97.0 0.38 8.2E-06 51.7 25.1 52 100-154 282-333 (953)
45 COG0531 PotE Amino acid transp 96.7 0.16 3.4E-06 49.7 18.0 62 98-162 201-262 (466)
46 TIGR03428 ureacarb_perm permea 96.4 0.86 1.9E-05 45.1 21.8 53 99-154 214-266 (475)
47 COG1113 AnsP Gamma-aminobutyra 95.9 0.22 4.8E-06 48.2 13.7 178 96-291 201-388 (462)
48 PF00324 AA_permease: Amino ac 95.8 0.055 1.2E-06 53.5 9.6 62 97-161 199-260 (478)
49 KOG1289 Amino acid transporter 95.0 1.8 3.9E-05 43.0 16.7 114 43-164 196-315 (550)
50 KOG1286 Amino acid transporter 94.1 2.6 5.6E-05 42.6 16.1 56 97-155 231-286 (554)
51 COG0833 LysP Amino acid transp 93.2 6.2 0.00013 39.3 16.5 122 22-151 159-284 (541)
52 TIGR00912 2A0309 spore germina 92.1 9.5 0.00021 36.0 16.1 61 99-163 179-240 (359)
53 TIGR00800 ncs1 NCS1 nucleoside 83.5 46 0.00099 32.6 14.9 65 98-166 207-276 (442)
54 PRK11375 allantoin permease; P 81.6 59 0.0013 32.3 16.9 20 262-281 373-392 (484)
55 KOG4812 Golgi-associated prote 80.5 3.6 7.8E-05 36.4 5.1 71 245-319 159-243 (262)
56 COG0814 SdaC Amino acid permea 76.3 26 0.00056 34.1 10.4 82 241-325 324-409 (415)
57 KOG2082 K+/Cl- cotransporter K 63.9 1.1E+02 0.0024 32.2 11.6 67 102-171 414-489 (1075)
58 PF03845 Spore_permease: Spore 57.1 33 0.00072 31.8 6.6 64 96-163 173-236 (320)
59 COG1914 MntH Mn2+ and Fe2+ tra 53.0 1.3E+02 0.0029 29.3 10.0 54 239-292 325-378 (416)
60 PHA02680 ORF090 IMV phosphoryl 49.1 51 0.0011 24.4 4.9 62 99-165 12-73 (91)
61 TIGR02358 thia_cytX probable h 44.7 2.9E+02 0.0063 26.5 16.7 43 116-162 191-233 (386)
62 TIGR00796 livcs branched-chain 44.1 3E+02 0.0065 26.5 17.2 41 114-157 197-241 (378)
63 COG0591 PutP Na+/proline sympo 42.7 3.6E+02 0.0077 26.9 18.7 32 27-58 159-190 (493)
64 PF00474 SSF: Sodium:solute sy 38.7 1.9E+02 0.0042 27.6 8.9 38 21-58 118-155 (406)
65 PRK12768 CysZ-like protein; Re 38.0 3E+02 0.0065 24.7 9.9 28 121-153 9-36 (240)
66 COG1457 CodB Purine-cytosine p 37.4 4.2E+02 0.009 26.2 17.0 129 19-164 126-258 (442)
67 PRK13183 psbN photosystem II r 35.8 40 0.00086 21.8 2.3 30 134-163 4-33 (46)
68 PRK11026 ftsX cell division AB 29.8 3.1E+02 0.0067 25.5 8.3 30 299-328 277-306 (309)
69 PF11188 DUF2975: Protein of u 29.5 89 0.0019 24.6 4.2 19 320-338 42-60 (136)
70 PHA03048 IMV membrane protein; 28.4 1.2E+02 0.0027 22.5 4.2 61 101-167 14-74 (93)
71 PF05805 L6_membrane: L6 membr 27.8 1.8E+02 0.0038 25.2 5.7 64 263-326 44-117 (195)
72 TIGR00813 sss transporter, SSS 26.9 5.6E+02 0.012 24.4 14.1 38 21-58 114-151 (407)
73 PRK09400 secE preprotein trans 26.8 1.1E+02 0.0025 21.0 3.6 33 120-158 20-52 (61)
74 COG3476 Tryptophan-rich sensor 26.4 1.4E+02 0.0031 24.9 4.8 51 109-165 22-73 (161)
75 TIGR00327 secE_euk_arch protei 26.2 1.2E+02 0.0026 21.0 3.6 32 122-159 18-49 (61)
76 CHL00020 psbN photosystem II p 26.0 53 0.0011 20.9 1.6 26 138-163 5-30 (43)
77 PF03134 TB2_DP1_HVA22: TB2/DP 25.9 2.8E+02 0.006 20.5 7.1 28 267-294 2-29 (94)
78 PRK15419 proline:sodium sympor 25.6 6.7E+02 0.015 24.9 14.5 34 22-55 159-192 (502)
79 PF05884 ZYG-11_interact: Inte 24.0 4.4E+02 0.0096 24.4 7.9 33 260-294 129-161 (299)
80 cd08765 Cyt_b561_CYBRD1 Verteb 23.6 3.4E+02 0.0075 22.5 6.6 68 132-203 44-111 (153)
81 PLN02680 carbon-monoxide oxyge 22.6 4.1E+02 0.009 23.7 7.3 67 132-202 76-142 (232)
82 PF02468 PsbN: Photosystem II 22.4 66 0.0014 20.5 1.6 25 139-163 6-30 (43)
83 COG5102 SFT2 Membrane protein 21.6 3.3E+02 0.0071 23.0 5.9 15 269-283 76-91 (201)
84 COG5052 YOP1 Protein involved 21.5 5.1E+02 0.011 22.1 8.2 53 272-324 61-113 (186)
85 COG1953 FUI1 Cytosine/uracil/t 21.2 8.4E+02 0.018 24.5 14.5 144 19-173 165-318 (497)
86 PRK04949 putative sulfate tran 20.6 6.3E+02 0.014 22.7 12.5 50 118-173 15-64 (251)
87 TIGR00439 ftsX putative protei 20.6 5.3E+02 0.011 23.9 8.0 27 302-328 280-306 (309)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-43 Score=332.58 Aligned_cols=268 Identities=20% Similarity=0.277 Sum_probs=233.4
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490 20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR 99 (340)
Q Consensus 20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (340)
++|.+.|+++..++.+|++++||||+|+++|++|++.+++ +++++.+|.+++.+...+.+ ...+..+
T Consensus 176 ~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~~~~~~---------~~~~~~~ 242 (449)
T KOG1304|consen 176 VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPPTSDLP---------AVTGWSG 242 (449)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCCccccc---------cccchhh
Confidence 5789999999999999999999999999999999998884 56666777777665222111 1224557
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhH---HHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCC
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYE 176 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~---~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~ 176 (340)
.+.++|+.+|||+|++++.|++++||+| ++|+ +++..+|.+++++|+.+|++||++|||++++.|++|+|+
T Consensus 243 ~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-- 316 (449)
T KOG1304|consen 243 LPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-- 316 (449)
T ss_pred hHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--
Confidence 7899999999999999999999999999 8999 999999999999999999999999999999999999995
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHH
Q 019490 177 PFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLA 256 (340)
Q Consensus 177 ~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA 256 (340)
+|+.+.+|+++++++..+||++.+|..+.+|+++.++.+++ ++++....+|.+++++++.+|
T Consensus 317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA 378 (449)
T KOG1304|consen 317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIA 378 (449)
T ss_pred -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999865543321 124778899999999999999
Q ss_pred HhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490 257 MIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF---SFTWVWLKILIWSCFIVSLVALVGSVQGL 324 (340)
Q Consensus 257 ~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~---~~~~~~~~~i~~~g~~~~v~Gt~~si~~i 324 (340)
.++|+++.++||+||++++.+++++|+++|++.++++.+ .++++.+..++++|++.++.|||.|+.++
T Consensus 379 ~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 379 VAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999999999999999999876542 34455566788899999999999999864
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-39 Score=306.76 Aligned_cols=277 Identities=39% Similarity=0.658 Sum_probs=238.1
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490 20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR 99 (340)
Q Consensus 20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (340)
.++.+.|+++++.+.+|++|+||++.+++.|..|.++...|..+.+++.+..+.+....+.+.+.. .+. .. .
T Consensus 159 ~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~-~~-~ 230 (437)
T KOG1303|consen 159 SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTI-PT-V 230 (437)
T ss_pred cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCC-cc-h
Confidence 566899999999999999999999999999999999999888877777776655442211111110 000 11 1
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchH
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~ 179 (340)
++++|+++|+|+||.++||||++||+| ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++ .|.|
T Consensus 231 -f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~ 303 (437)
T KOG1303|consen 231 -FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTW 303 (437)
T ss_pred -hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--Cchh
Confidence 899999999999999999999999999 679999999999999999999999999999999999999996 3679
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHHhc
Q 019490 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF 259 (340)
Q Consensus 180 ~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i 259 (340)
+...+++++.+|++.+++++.+|+.+.+|+......++ +. ++..+.|.+.|+.+++.+.++|+.+
T Consensus 304 ~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~ 368 (437)
T KOG1303|consen 304 LIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSF 368 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987543221 00 1123789999999999999999999
Q ss_pred ccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019490 260 PFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQ 326 (340)
Q Consensus 260 P~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~Gt~~si~~ii~ 326 (340)
|+|+++++++||+...++++++|+++|++.+|+++...+|++++.+ .++|+++++....+++++++.
T Consensus 369 PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 369 PFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988888899999988 688888989998888888875
No 3
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.7e-38 Score=305.89 Aligned_cols=280 Identities=18% Similarity=0.167 Sum_probs=219.0
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490 20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR 99 (340)
Q Consensus 20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (340)
.+|.+.|+++++++.+|++++|++|+++++|.+|..+++.+...+++..+. ++.+ ++.+ .....+...
T Consensus 167 ~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~-----~~~~----~~~~~~~~~ 234 (473)
T PLN03074 167 NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQV-----EGVK----HSGPTKLVL 234 (473)
T ss_pred CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCC-----CCCC----CCCchhHHH
Confidence 468899999999999999999999999999999998765432222211111 1111 1111 001235667
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc--ccccccCCCCc
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG--NFLTGFGFYEP 177 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~--~il~nl~~~~~ 177 (340)
.+.++++++|+|+||+++||+++||||| ++|+++...++..++..|+.+|+.||++|||++++ +.+.|+|++
T Consensus 235 ~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-- 308 (473)
T PLN03074 235 YFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-- 308 (473)
T ss_pred HHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--
Confidence 7788899999999999999999999999 78999999999999999999999999999999764 567778742
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHH
Q 019490 178 FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAM 257 (340)
Q Consensus 178 ~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~ 257 (340)
. ...++++++.++++.+|+++..|+.+..|+.... ++ + +....|+.+|+.+++.++++|+
T Consensus 309 ~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~--~~----~-------------k~~~~r~~~R~~lv~~~~~iA~ 368 (473)
T PLN03074 309 G-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGV--HD----T-------------KSICLRALARLPVVVPIWFLAI 368 (473)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc--cc----c-------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 2 3678999999999999999999998888875421 00 0 1126788999999999999999
Q ss_pred hcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC-------------cchhhH--HHHHHHHHH-HHHHHHHHHHHHH
Q 019490 258 IFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR-------------RFSFTW--VWLKILIWS-CFIVSLVALVGSV 321 (340)
Q Consensus 258 ~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~-------------~~~~~~--~~~~~i~~~-g~~~~v~Gt~~si 321 (340)
.+|+|++++||+||++++.+++++|+++|+++++++ .+++.| +.+..++++ |++.++.|+|+|+
T Consensus 369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi 448 (473)
T PLN03074 369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASM 448 (473)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHH
Confidence 999999999999999999999999999999977543 111122 445556664 4444689999999
Q ss_pred HHHHHhcccccccccc
Q 019490 322 QGLIQSLKTYKPFQAV 337 (340)
Q Consensus 322 ~~ii~~~~~~~~f~~~ 337 (340)
+++++++++++.|++|
T Consensus 449 ~~ii~~~~~~~~f~~~ 464 (473)
T PLN03074 449 TNFVRQIDTFGLFAKC 464 (473)
T ss_pred HHHHHhhhhhhhhhhh
Confidence 9999999996665554
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-37 Score=304.17 Aligned_cols=275 Identities=15% Similarity=0.247 Sum_probs=208.8
Q ss_pred chhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCccccccccccc----ccCcchhHHH
Q 019490 24 NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV----DVSASEKVWR 99 (340)
Q Consensus 24 ~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 99 (340)
..+.++++++++||+++|++++|+++|.+|+++++..+++ +++++..++.+.+. ++.+.+. +........+
T Consensus 183 ~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~---ivi~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~~ 257 (467)
T PTZ00206 183 LLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIV---IVVHSCMNGLPENI--KNVSVGKDDNAEIILFNSGNR 257 (467)
T ss_pred EeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhh---hhhhhhcccCcccc--cccccCCCCCCceEEecCchH
Confidence 3445667888999999999999999999999887743222 22222223222111 0101000 0000111236
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccC-CCCch
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG-FYEPF 178 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~-~~~~~ 178 (340)
.+.++|+++|||.||.+.+|+++||+|| +.+||.++...++.+++.+|..+|++||++|||++++++++|++ .++
T Consensus 258 ~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~-- 333 (467)
T PTZ00206 258 AIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE-- 333 (467)
T ss_pred HHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC--
Confidence 7899999999999999999999999997 34889999999999999999999999999999999999999994 333
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHHh
Q 019490 179 WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI 258 (340)
Q Consensus 179 ~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ 258 (340)
....++++++.+.++.+||++.+|+++.+++... ++.+ + .+ .+++...+..+++++.++|++
T Consensus 334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~--~~~~----~-----~~-------~~~~~~~~~~l~~~~l~iAi~ 395 (467)
T PTZ00206 334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG--WDAR----K-----VA-------FWKHCIAVVTLSVVMLLCGLF 395 (467)
T ss_pred chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC--CCcc----c-----Cc-------hhhHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999999999999998887642 1211 0 01 145555667777788999999
Q ss_pred cccHHHHHHHHhhhhhhhHHHHHHHHHHHHHh---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490 259 FPFFNDFVGLIGAASFWPLTVYFPVEMYIART---KIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 325 (340)
Q Consensus 259 iP~~~~visLvGs~~~~~l~filP~l~~~~~~---~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii 325 (340)
+|+++.+++|+||++++.++|++|+++|++.. +++.+..+|+.++.++++|++.+++|||+++++.+
T Consensus 396 vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 396 IPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred cCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999999999999852 22223334556778899999999999999999876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1e-35 Score=287.21 Aligned_cols=279 Identities=26% Similarity=0.381 Sum_probs=219.0
Q ss_pred cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccC---CCCcccccccccccccCcchh
Q 019490 20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD---GPHATTLTGTTVGVDVSASEK 96 (340)
Q Consensus 20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 96 (340)
..++..|.++.+++++||+++|++++|++.|.+|+++++.+ +...+....++ .+.+...++ .....+
T Consensus 121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 190 (409)
T PF01490_consen 121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYF----IVIVVIYIISYGPGEPSGVPSPP------VWPFIS 190 (409)
T ss_pred cccccccccccccccccccccchhhHHHHHhhhhhhcccee----eeeecceeeeeeccccccccccc------ccccch
Confidence 46788999999999999999999999999999999988742 11222222221 111111111 112345
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcch-hhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCC
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPEN-KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFY 175 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~-~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~ 175 (340)
.++.+.++|+++|||.||.+++|+++|||+|+ + ++++++...++.+++.+|..+|..||++||+++++++++|+|++
T Consensus 191 ~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~--~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~ 268 (409)
T PF01490_consen 191 FSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS--KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND 268 (409)
T ss_pred hhHHHHhhhhhhhhhhcccccceeeeeccCCc--cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc
Confidence 67899999999999999999999999999982 2 24559999999999999999999999999999999999999964
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHH
Q 019490 176 EPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVL 255 (340)
Q Consensus 176 ~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i 255 (340)
++...++++++.++++.+||++.+|.++.+|+...+..+..+...+ .++..+++|..+|+.+++.++++
T Consensus 269 --~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i 337 (409)
T PF01490_consen 269 --DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK---------NTPSSRWLRYLIRIILVLLSFLI 337 (409)
T ss_pred --ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc---------cccccceeeeeeecchhhhhhhh
Confidence 3678999999999999999999999999999876432000000000 01223477899999999999999
Q ss_pred HHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 019490 256 AMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVW-----LKILIWSCFIVSLVALVGSV 321 (340)
Q Consensus 256 A~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~-----~~~i~~~g~~~~v~Gt~~si 321 (340)
|..+|+++++++++||++++.++|++|+++|++.+++++.+.+|+. .+.++.+|++.++.|+|+++
T Consensus 338 A~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 338 AIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999999999999999999999999999887654333322 34567778889999999875
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-33 Score=251.21 Aligned_cols=293 Identities=15% Similarity=0.216 Sum_probs=237.8
Q ss_pred CCCcccCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcc
Q 019490 15 HHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSAS 94 (340)
Q Consensus 15 ~~~~~~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (340)
|.+....|.+-|+++....++|.+++|+||-.+.+|++++++.++..++.+ .|...+.. +.+++.+.+ .
T Consensus 230 ~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v---~YCLs~~~--dW~wskv~F------s 298 (524)
T KOG4303|consen 230 CFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMV---LYCLSFVS--DWSWSKVTF------S 298 (524)
T ss_pred cCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--hccceeEEE------E
Confidence 445567899999999999999999999999999999999999987555433 33322221 123333322 2
Q ss_pred hhHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCC
Q 019490 95 EKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGF 174 (340)
Q Consensus 95 ~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~ 174 (340)
.+....+.++|+++|+|..|..+|.++.+|+|| .+|...+.++.+...++-.++|.+||++|||+++..|++|+|.
T Consensus 299 idi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~ 374 (524)
T KOG4303|consen 299 IDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN 374 (524)
T ss_pred EEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc
Confidence 344466689999999999999999999999999 7899999999999999999999999999999999999999985
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCccc-ccchhhhhHHHHHHHHHH
Q 019490 175 YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVY-HVNSFRLVWRTAYVIVSA 253 (340)
Q Consensus 175 ~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~ 253 (340)
+ .....+++++++.-+.|||+-.+...+.+|+.+.+-.|+.+|-. .|.++ +.+.+.+..|..+++.+.
T Consensus 375 q---sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fps--------cys~Dg~Lk~WgltlR~~lvvfTl 443 (524)
T KOG4303|consen 375 Q---SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPS--------CYSPDGSLKEWGLTLRIILVVFTL 443 (524)
T ss_pred c---chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCce--------eeCCCcchhhheeeeeeHHHHHHH
Confidence 3 35788999999999999999776788888887654334332210 11111 222334568999999999
Q ss_pred HHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019490 254 VLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP 333 (340)
Q Consensus 254 ~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii~~~~~~~~ 333 (340)
++|+.+|+|..+++|+|++.++.++|+.|++||+++.++.....+.+....++++|...++.|.|-|..++++++++..+
T Consensus 444 lmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 444 LMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999998766666666777899999999999999999999999987544
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.97 E-value=3.8e-30 Score=245.48 Aligned_cols=278 Identities=19% Similarity=0.274 Sum_probs=219.3
Q ss_pred CCch-hHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHH
Q 019490 22 SNNP-LMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA 100 (340)
Q Consensus 22 ~~~~-~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (340)
+++. |+++...+..||++.|++.+|++.|.++.+++..++. +++++.+..+... ++..+ ...+....++.
T Consensus 126 ~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~----~vv~~~~~~~~~~---~~~~~--~~~~~~~~~~~ 196 (411)
T KOG1305|consen 126 DRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVV----LVVYKYFQGPCAL---GRLSY--LVPNLSSFSSL 196 (411)
T ss_pred cceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhccccc---CCccc--ccCCcchhhhh
Confidence 3444 6888999999999999999999999999999885433 2333333322100 11111 01112223688
Q ss_pred HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCch--
Q 019490 101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF-- 178 (340)
Q Consensus 101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~-- 178 (340)
+.++++++|||.||.++.|+++||+|| +++++.++...+...++.+|..+|.+||+.|||++++|++.++|.++..
T Consensus 197 ~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l 274 (411)
T KOG1305|consen 197 FYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLL 274 (411)
T ss_pred hhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhH
Confidence 899999999999999999999999999 6789999999999999999999999999999999999999999865432
Q ss_pred --HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHH
Q 019490 179 --WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLA 256 (340)
Q Consensus 179 --~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA 256 (340)
+....++..+.++.+.++|+..+|++..++....+..+++ + +..+.++..++..++..+.+.|
T Consensus 275 ~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~a 339 (411)
T KOG1305|consen 275 RSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLA 339 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHH
Confidence 2357899999999999999999999999877654332221 0 1112455678999999999999
Q ss_pred HhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019490 257 MIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS 327 (340)
Q Consensus 257 ~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii~~ 327 (340)
+.+|+++++++++||++++.++|++|+++|++..|+ +.++....+...++++..++.|+..-+.++..+
T Consensus 340 i~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 340 IFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999886 333333456677888888899988888887754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.67 E-value=7.2e-15 Score=141.98 Aligned_cols=269 Identities=15% Similarity=0.140 Sum_probs=175.6
Q ss_pred CCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHH
Q 019490 21 TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA 100 (340)
Q Consensus 21 ~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (340)
++++.+.+++..++.++++.++...++..|.+....+...++. +.+.....++. .....+ ..........
T Consensus 126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l----~~~~~~~~~~~--~l~~~~----~~~~~~~~~~ 195 (415)
T COG0814 126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLL----VVYLIPHWNPA--NLFALP----SASQSFWKYL 195 (415)
T ss_pred cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH----HHHHhcccCHH--HHhccc----ccchhhHHHH
Confidence 6788889999999999999999999999999998877753332 22221111110 111100 0001234477
Q ss_pred HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchHH
Q 019490 101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180 (340)
Q Consensus 101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~~ 180 (340)
..++|++.|||+||++++++++||++++ +++.+|+...+..+..++|..+++.+|..+|+.+.++++++.++++ ..
T Consensus 196 ~~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~-~~- 271 (415)
T COG0814 196 LLAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI-SL- 271 (415)
T ss_pred HHHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH-HH-
Confidence 7999999999999999999999999884 3349999999999999999999999999999999999999997532 11
Q ss_pred HHHHHHHHHHHHHHhhhhcccchH--------------HHHHHHhhhhCCCCccccCCCccccCCCccccc-chhhhhHH
Q 019490 181 VDFANACIAVHLIGAYQVFCQPIF--------------GFVEKWCNKRWPENKFITSEHGINVPCYGVYHV-NSFRLVWR 245 (340)
Q Consensus 181 ~~~~~~~~~i~l~~s~pl~~~p~~--------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 245 (340)
.........+...+++...+|.+ +..+....+ .++ + . +++.. ........
T Consensus 272 -l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~-----~-~------~r~~~~~~~~~~~~ 336 (415)
T COG0814 272 -LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNS-----K-P------GRKKTGLLTFLPPL 336 (415)
T ss_pred -HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccC-----c-c------cchhhhhhhHHHHH
Confidence 11112222222233333333333 333332211 010 0 0 01111 12223345
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 019490 246 TAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALV 318 (340)
Q Consensus 246 ~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~ 318 (340)
.+.++....++...|..+.+++.+|+.....+.++.|...+.+....+..+.++.....++++|+..+..-.+
T Consensus 337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 5666777788889999999999999999999999999998877654333222112345556666665544443
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.97 E-value=2.4e-08 Score=95.89 Aligned_cols=234 Identities=9% Similarity=0.070 Sum_probs=141.5
Q ss_pred CchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHHHH
Q 019490 23 NNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQ 102 (340)
Q Consensus 23 ~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (340)
.+.+.++...++.++. .+..|..++++.+.+...+...++.++..+.+ . ++ .+..+. + .. .....+...
T Consensus 114 ~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~-~--~~--~~~~~~--~--~~-~~~~~~~~~ 182 (381)
T TIGR00837 114 ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPH-V--KG--DLLLDV--A--LD-TSYWPYILS 182 (381)
T ss_pred HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--cH--HHHhcC--c--cc-cccHHHHHH
Confidence 3333333444444443 45567888887776666554322222111111 1 11 011000 0 00 012336668
Q ss_pred HHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC----------ccccccc
Q 019490 103 AIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----------GNFLTGF 172 (340)
Q Consensus 103 ~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~----------~~il~nl 172 (340)
+++...++|++|.+++++.++++++ +||.+|++..+..+++++|+++........+.+.- ++....+
T Consensus 183 a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~ 259 (381)
T TIGR00837 183 ALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNAL 259 (381)
T ss_pred HHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHH
Confidence 8899999999999999999999865 27899999999999999999875544433332211 1111111
Q ss_pred CC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHH
Q 019490 173 GF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIV 251 (340)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 251 (340)
.. ....+...++..+..++++.++.-......+...+.+ +.++ ++ ..|.....+..+.
T Consensus 260 ~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~----~~~~--~~---------------~~~~~~~~~~~~~ 318 (381)
T TIGR00837 260 QGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLF----KFDD--SK---------------KGRFKTGLLTFLP 318 (381)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCc--cc---------------CCCchhhhhhHHh
Confidence 10 0123456677777778888888765545555544433 2210 00 1133445566677
Q ss_pred HHHHHHhcccHH-HHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490 252 SAVLAMIFPFFN-DFVGLIGAASFWPLTVYFPVEMYIARTKI 292 (340)
Q Consensus 252 ~~~iA~~iP~~~-~visLvGs~~~~~l~filP~l~~~~~~~~ 292 (340)
..++|.+.|+.. ..++..| +.+..+.+++|+++.++.+|+
T Consensus 319 pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 319 PLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 788899999877 8999999 889999999999999998764
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.50 E-value=1.8e-05 Score=76.28 Aligned_cols=171 Identities=17% Similarity=0.282 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhh--hhhhh---------hcccCCC
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC--GVMGY---------LAFGNDA 164 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY---------~~fG~~v 164 (340)
+....+.++++..+||..|.++|++.+.+++. +||.+|++..+..+..++|++. ..+|- ..-|+++
T Consensus 182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~ 258 (394)
T PF03222_consen 182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV 258 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence 44566799999999999999999999999853 3789999998888888888773 33441 1122222
Q ss_pred Cc--ccccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhh
Q 019490 165 PG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL 242 (340)
Q Consensus 165 ~~--~il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (340)
.+ ..+.+.. +..+...++.++-.+++.+||-=...-.+|.++..+.. +++ ...|.
T Consensus 259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~ 315 (394)
T PF03222_consen 259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRL 315 (394)
T ss_pred HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchH
Confidence 11 1122221 12356667778888888888843333445555444311 110 02233
Q ss_pred hHHHHHHHHHHHHHHhcc-cHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC
Q 019490 243 VWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR 293 (340)
Q Consensus 243 ~~r~~~~~~~~~iA~~iP-~~~~visLvGs~~~~~l~filP~l~~~~~~~~~ 293 (340)
.......+...++|...| .|...+++.| ...+.+..++|+++.+|.++++
T Consensus 316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 333445566777888887 4678899999 9999999999999999987654
No 11
>PRK10483 tryptophan permease; Provisional
Probab=98.31 E-value=6.1e-05 Score=72.60 Aligned_cols=168 Identities=11% Similarity=0.121 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh--hhhhhhhc---------ccCCCCcc
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGYLA---------FGNDAPGN 167 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~GY~~---------fG~~v~~~ 167 (340)
..+.+++++.+||+.|+++|++.+.+++. .||.+|++..+..+...+|+. ..+.|-.. -|+++ +.
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~ 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence 46699999999999999999999998853 368999999999999999988 23333221 23332 11
Q ss_pred cccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHH
Q 019490 168 FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRT 246 (340)
Q Consensus 168 il~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 246 (340)
.+..+.. .+..+...+..++..+++..||-=.....+|.+...+.. +++ . ..|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~----~---------------~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS----A---------------MGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeeh
Confidence 1122221 012355566777777788888743333455555544321 110 0 12222334
Q ss_pred HHHHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490 247 AYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 292 (340)
Q Consensus 247 ~~~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~ 292 (340)
...+...++|...|+ |-.-++..|.. +..+..++|+++-++.+|+
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 567788899999996 78899999976 7788899999999999875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.20 E-value=4e-05 Score=73.93 Aligned_cols=169 Identities=12% Similarity=0.171 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC-----CCc-----ccc
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----APG-----NFL 169 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-----v~~-----~il 169 (340)
.+.+++++.+||+.|+++|++.+.+++. .+|.+|++..+..+...+|+..=......-+.+ .++ +++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 6789999999999999999999999753 378999999999998888877322222111111 111 222
Q ss_pred cccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHH
Q 019490 170 TGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY 248 (340)
Q Consensus 170 ~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 248 (340)
..+.. -+..+...++.++..+++..||-=.....+|.+...+.+ ++ + ...|...-.+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~-----~--------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RN-----T--------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Cc-----c--------------ccCCchhehhh
Confidence 33321 012356667777777788888743332445554443311 11 0 01234445667
Q ss_pred HHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC
Q 019490 249 VIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKIR 293 (340)
Q Consensus 249 ~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~~ 293 (340)
.+...++|...|+ |...+++.|. ..+.+.+++|+++-+|.++++
T Consensus 319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 7888889999985 5677888775 588999999999999987643
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.17 E-value=0.00026 Score=68.31 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh--hhhhhh---------hcccCCCCcc
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGY---------LAFGNDAPGN 167 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~GY---------~~fG~~v~~~ 167 (340)
..+.+++++.+||+.|+++|++.+.+++. .|+.+|.+.....+..++|+. ...+|- ...|+++...
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 46689999999999999999999998753 367788888877887778865 233331 1233333221
Q ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHH
Q 019490 168 FLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA 247 (340)
Q Consensus 168 il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 247 (340)
+..-....+..+......++..+++..||-=.....+|.+...+.. +++ . ..|...-..
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~----~---------------~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS----H---------------GGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeehh
Confidence 1111111112466677777878888888843322445554443311 110 0 122223345
Q ss_pred HHHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490 248 YVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 292 (340)
Q Consensus 248 ~~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~ 292 (340)
..+...++|...|+ |-..++..|.. ++.+.-++|+++-++.+|+
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 67778889999997 88899999996 7788999999999999875
No 14
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.03 E-value=0.00056 Score=67.68 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 106 DVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 106 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
.+.++|.|--.....-+|+|||+ |+.+|++..+...+..+|.+....
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~ 248 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLA 248 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999994 789999999999999999875444
No 15
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00073 Score=65.73 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh--cccCCCCcccc-ccc
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL--AFGNDAPGNFL-TGF 172 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~--~fG~~v~~~il-~nl 172 (340)
+..++..++=.-.|||.|=..+-.+-+|+||| +|++++++..++.+++.+|+++=+..+. ...|-..++.. ..+
T Consensus 202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~F 278 (479)
T KOG1287|consen 202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTF 278 (479)
T ss_pred chHHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHH
Confidence 33455677777889999999999999999999 4789999999999999999997544332 22222222211 001
Q ss_pred CCC-CchHHHHHHHHHHHHHHHHhhhhcccc-hHHHHHHHhhhhCCCCc-cccCCCccccCCCcccccchhhhhHHHHHH
Q 019490 173 GFY-EPFWLVDFANACIAVHLIGAYQVFCQP-IFGFVEKWCNKRWPENK-FITSEHGINVPCYGVYHVNSFRLVWRTAYV 249 (340)
Q Consensus 173 ~~~-~~~~~~~~~~~~~~i~l~~s~pl~~~p-~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 249 (340)
.+. .+.+ ..++.++..++.+.+.--.++. .|.....--+.+.|+.- ..++ ++.+. ...+.+.
T Consensus 279 a~~~~G~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~-----------~~~TP---~~allf~ 343 (479)
T KOG1287|consen 279 ADRILGVF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV-----------RRFTP---RPALLFS 343 (479)
T ss_pred HHHhccch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC-----------CCCCC---hHHHHHH
Confidence 100 0112 2445555556555554322211 11111110001122210 0000 00001 1234445
Q ss_pred HHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCc
Q 019490 250 IVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRR 294 (340)
Q Consensus 250 ~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~ 294 (340)
....++...+.|++.+++.++=.......+.+=+++++|.++++.
T Consensus 344 ~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 344 GLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 555566666789999999999999989999999999999988653
No 16
>PRK11021 putative transporter; Provisional
Probab=97.82 E-value=0.0033 Score=60.96 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
+..+...++....|+|.|--.....-+|+|||+ |+.+|++..+...+..+|++....
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 344667889999999999999999999999994 789999999999999999997543
No 17
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.81 E-value=0.0011 Score=64.31 Aligned_cols=201 Identities=9% Similarity=0.073 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCC-------CcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC-----CCc
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSS-------PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----APG 166 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p-------~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-----v~~ 166 (340)
....+++++.+||+.|+.+|++...+|+. +.+.+|-+|++..+..+...+|+..-...-..-+.+ .+.
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56689999999999999999999985332 112578889999999988888887544333333222 112
Q ss_pred cc--c----cccCCCC-c-----hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcc
Q 019490 167 NF--L----TGFGFYE-P-----FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGV 234 (340)
Q Consensus 167 ~i--l----~nl~~~~-~-----~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (340)
|+ + +.++... . .+......+...+++..||-=.....+|.++....+.....+ ++ +
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~--~~----~------ 357 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGD--KT----K------ 357 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc----c------
Confidence 22 1 1222100 0 134555556666677777733333567776665522101100 00 0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Q 019490 235 YHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIV 312 (340)
Q Consensus 235 ~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 312 (340)
.+.+..+.....+..+.+.+.|..=|++-++++-+|+-....+.|++|.+.-.|.-.-++.+ .+..++.+.+.|++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~ 434 (443)
T PRK13629 358 VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT 434 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence 11124556677788888999999999999999988888888999999998876652211111 111345556666544
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=97.79 E-value=0.0032 Score=61.58 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 156 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~G 156 (340)
.+...++....|+|.|--....+-+|+|||+ |+.+|++..+..++..+|++.....
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3555778889999999999999999999994 6899999999999999998865443
No 19
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.78 E-value=0.0011 Score=63.98 Aligned_cols=180 Identities=9% Similarity=0.074 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhh----hcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-----Ccc
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDT----LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGN 167 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~----m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v-----~~~ 167 (340)
..+...+++...+||.+|..+++...+ .+||+.+.+|-+|....+..+...+|+..-...-...+.+. +++
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 346779999999999999999999733 44343235778899999988888888775444333333221 122
Q ss_pred c--ccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhH
Q 019490 168 F--LTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVW 244 (340)
Q Consensus 168 i--l~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (340)
+ +..+.+ .+..+...+..+.-.+++..|+-=.....++.++....+....+ ++ + .+++......
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~---~~----~------~~~~~~~~~~ 331 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK---GK----K------INIRKLNRAI 331 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc---cc----c------cCHHHHHHHH
Confidence 1 111111 01124455555666667777775444466777776552210110 00 0 1112445566
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 019490 245 RTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIAR 289 (340)
Q Consensus 245 r~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~ 289 (340)
..+..+.+...|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus 332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 677888888999999999999997777778889999999887665
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=97.75 E-value=0.0038 Score=61.55 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
..+...++....|+|.|--.....-+|+|||+ |+.+|++..+......+|.....
T Consensus 208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~ 262 (458)
T PRK10249 208 WNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLV 262 (458)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567888999999999999999999999993 78999999999999999977433
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=97.71 E-value=0.0038 Score=62.27 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
....+.++....|+|.|--.....-+|+|||+ |+.+|++..++..+.++|+.....
T Consensus 219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~ 274 (499)
T PRK15049 219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVL 274 (499)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667789999999999999999999994 689999999888888888875443
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.70 E-value=0.0055 Score=60.54 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF 160 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~f 160 (340)
.+...++....|+|.|--....+-+|.||+ |+.+|.+..+...+..+|.+.....+...
T Consensus 195 ~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~ 253 (468)
T TIGR03810 195 TQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIM 253 (468)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345578888999999988888888888875 79999999999999999999776554333
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.70 E-value=0.0044 Score=60.88 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
..+...++....|+|.|--.....-+|+|||+ |+.+|++..+...+..+|++....
T Consensus 180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999999999999999999999993 689999999999999999885444
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.62 E-value=0.0098 Score=58.32 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
+.....++....|+|.|--.....-+|+|||+ |+.+|++..+..++..+|.+....
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 34555778889999999999999999999994 689999999999999999987654
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=97.62 E-value=0.0096 Score=58.76 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
+.+...++....|+|.|--.....-+|+||| +|+.+|++..+...+..+|+....
T Consensus 199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~ 253 (461)
T PRK10746 199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIF 253 (461)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466688999999999999999999999999 378999999888888888887533
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.59 E-value=0.0056 Score=60.28 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC 152 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~ 152 (340)
......+++...|+|.|--.....-+|+|||+ |+.+|++..+.......|+..
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 33555778889999999999999999999994 689999988888777777653
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.59 E-value=0.012 Score=58.28 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
..+...++....|+|.|--....+-+|+|||+ |+.+|++..+...+..+|++...
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999994 78999999999999999998643
No 28
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.55 E-value=0.0071 Score=60.43 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 019490 101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 153 (340)
Q Consensus 101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g 153 (340)
...+....|+|.|--.....-+|+|||+ |+++|++..+..++..+|.+..
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 3444446889999999999999999994 6899999999998888887643
No 29
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.55 E-value=0.011 Score=57.82 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 157 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY 157 (340)
...+...++....|+|.|--.....-+|+|||+ |+.+|++..+...+..+|++......
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999994 68999999999999999998765543
No 30
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.53 E-value=0.0057 Score=60.96 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
+..+...++....|+|.|--....+-+|+|||+ |+.+|++..+..++..+|++....
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a 289 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIA 289 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999999999999999993 689999999999999999997543
No 31
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.50 E-value=0.0095 Score=58.41 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
..+...++....|+|.|--.....-+|+|||+ |+.+|++..+..+++++|++....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999999999999999999994 689999999999999999886543
No 32
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.48 E-value=0.0084 Score=60.60 Aligned_cols=56 Identities=7% Similarity=0.139 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
..+.+.+.....|+|.|--.....-+|+|||+ |+.+|.+..++.+++.+|.++...
T Consensus 230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999994 689999999999999999986544
No 33
>TIGR00909 2A0306 amino acid transporter.
Probab=97.46 E-value=0.019 Score=55.82 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 157 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY 157 (340)
..+...++....++|.|.-......+|+|||+ |+.+|++..+..++.++|++......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566888899999999999999999999993 68999999999999999998765433
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.45 E-value=0.0065 Score=58.99 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 162 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~ 162 (340)
.+.+++...|+|.|--.....-+|+|| |+.+|++..+..++.++|.+....-....++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence 568888899999999999999999775 5899999999999999999986655545444
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.41 E-value=0.025 Score=55.93 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
......++....|+|.|--....+-+|+|| + |+.+|.+..+..++.++|++....
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~ 252 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLL 252 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999 4 799999999999999999887554
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.41 E-value=0.02 Score=56.61 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
..+...++....|+|.|--.....-+|+|||+ |+.+|++..+...+..+|+.....
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~ 260 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLV 260 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999994 689999999999999999887553
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.39 E-value=0.026 Score=55.85 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 156 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~G 156 (340)
.+.+.++....|+|.|--.....-+|+|||+ |+.+|++..+.......|.+....-
T Consensus 211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~ 266 (469)
T PRK11049 211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVI 266 (469)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999993 6899999877777777787655443
No 38
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.36 E-value=0.023 Score=56.34 Aligned_cols=50 Identities=8% Similarity=-0.022 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM 151 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~ 151 (340)
....++....|+|.|--.....-+|+|||+ |+.+|++..+..+...++.+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHH
Confidence 445566667899999999999999999994 78999999988776654443
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.27 E-value=0.059 Score=53.05 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 153 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g 153 (340)
.+...++....|+|.|--.....-+|+|||+ |+.+|++..+......+|....
T Consensus 199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTL 251 (457)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3666888899999999999999999999993 6799999888777777787754
No 40
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.22 E-value=0.03 Score=54.82 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
+.+.+.++....|+|.|.-.....-+|+|||+ |+.+|++..+..++..+|...-.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 34667888888999999999999999999994 68999999999988888877633
No 41
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.22 E-value=0.038 Score=54.30 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
..+...++....|+|.|--....+-+|+|||+ |+.+|++..+......+|++....
T Consensus 200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~ 255 (452)
T TIGR01773 200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFI 255 (452)
T ss_pred HHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999993 689999988888888888875443
No 42
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.18 E-value=0.057 Score=53.79 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
.+...++....|+|.|--.....-+|+|||+ |+.+|++..+...+..+|.+..+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 3455677778999999999999999999994 68999999999999999988543
No 43
>PRK10836 lysine transporter; Provisional
Probab=97.03 E-value=0.12 Score=51.43 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
...+.+.....|+|.|--.....-+|+|||+ |+.+|++..++..+..+|++....
T Consensus 205 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~ 259 (489)
T PRK10836 205 AAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILI 259 (489)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666799999999999999999993 789999999999999999987543
No 44
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.00 E-value=0.38 Score=51.73 Aligned_cols=52 Identities=23% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
++..++++..||.|-.....+-.|+|||+ |+.++.+..+..+++++|+++.+
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55777888889999999999999999994 78999999999999999999865
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.65 E-value=0.16 Score=49.73 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 162 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~ 162 (340)
.....+++...++|.|-......-+|+|||+ |+.+|.+..++..+..+|+.....-....++
T Consensus 201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 201 GGILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3677888999999999999999999999983 6799999999999999999987766666554
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.45 E-value=0.86 Score=45.08 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV 154 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~ 154 (340)
....+.....|+|.|--....+-+|+|||+ |+.+|.+..+..+...+|.++-+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 444566667899999999999999999994 78999999999888766655433
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.92 E-value=0.22 Score=48.24 Aligned_cols=178 Identities=14% Similarity=0.180 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHH-----HHHHHHHHHHHhhhhhhhhcccCCCCccccc
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATA-----VGVTTTTLFYIMCGVMGYLAFGNDAPGNFLT 170 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~-----~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~ 170 (340)
...+.+.++-+.+|||.|.-.+=-.-+|-|||+ |..+|+.+ ....-+..+..++.+.=|-.++++.++-+ .
T Consensus 201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV-~ 276 (462)
T COG1113 201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV-T 276 (462)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH-H
Confidence 456778999999999999999999999999995 56777653 44555566666677777777777644432 2
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHhhh-hCCCCccccCCCccccCCCcccccchhhhhHHHH
Q 019490 171 GFGFYEPFWLVDFANACIAVHLIGAY--QVFCQPIFGFVEKWCNK-RWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA 247 (340)
Q Consensus 171 nl~~~~~~~~~~~~~~~~~i~l~~s~--pl~~~p~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 247 (340)
-+..-+-.+...+.|..+..+.+.+. .+|. .-+.+-.+-.+ .-|+ .+ .+-....+| ..-+....+
T Consensus 277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys--tsRmL~~la~~g~APk-~~-~klsk~gVP--------~~ai~~s~~ 344 (462)
T COG1113 277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYS--TSRMLYSLAKQGDAPK-AF-AKLSKRGVP--------VNAILLSAV 344 (462)
T ss_pred HHHHcCCcccccceeEEEeechhhcccccccc--cchHHHHHhhcCcccH-hH-hhccccCCC--------HHHHHHHHH
Confidence 22110001122222222222222222 2221 11112111100 0011 00 000000122 444567777
Q ss_pred HHHHHHHHHHhcccHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhC
Q 019490 248 YVIVSAVLAMIFPFFNDFVGLIGAASFWPL--TVYFPVEMYIARTK 291 (340)
Q Consensus 248 ~~~~~~~iA~~iP~~~~visLvGs~~~~~l--~filP~l~~~~~~~ 291 (340)
...++.++-...| +.++.++-+..+..+ ...+=.+.|+|.+|
T Consensus 345 ~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 345 VLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888889 666666655554433 33444566888876
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.80 E-value=0.055 Score=53.55 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 161 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG 161 (340)
+.+.+.++....++|.|--.....-+|.|||+ |+.+|....+.....++|.+.....=...+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~ 260 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVP 260 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccC
Confidence 55788999999999999999999999999993 789999999999999999886654434444
No 49
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.00 E-value=1.8 Score=43.00 Aligned_cols=114 Identities=9% Similarity=0.084 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcc-c-----ccccccccccCcchhHHHHHHHHHHHHHhhcCccc
Q 019490 43 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT-T-----LTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTV 116 (340)
Q Consensus 43 l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~ 116 (340)
-|.+++++.+++..++...++.++......-++.+.+. + .++.+ | . .+..|+...++-.-...+.|--.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~s-g--w--~~~G~afil~f~~~~wt~sGyDa 270 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYS-G--W--KNNGWAFILGFFNPAWTMSGYDA 270 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccC-C--C--CcchHHHHHhhccceeEEeccCc
Confidence 35777777777776665444444333332222211111 0 11110 0 1 12566666677777777777778
Q ss_pred hHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 019490 117 LVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 164 (340)
Q Consensus 117 ~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v 164 (340)
-..+-+|-+|++ ++-+|.+..+..+..++-.++-+.-..+-++|.
T Consensus 271 ~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 271 AAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred hHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 889999999985 678888887777766665544443334445443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.15 E-value=2.6 Score=42.62 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM 155 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~ 155 (340)
+.+...++-+..|+|.|-=.+-..-+|-||| +|+.+++...++..++.+|++..+.
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999 4789999999999999999987543
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.24 E-value=6.2 Score=39.35 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHHHhhc--CCCcchhh-HHHHHHHHHHHHHHHhhheeeeeecccCCCCccccccccccccc-CcchhH
Q 019490 22 SNNPLMIIFACIQIVLSQ--IPNFHKLS-WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDV-SASEKV 97 (340)
Q Consensus 22 ~~~~~~~i~~~i~~pL~~--~r~l~~L~-~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 97 (340)
+...|..++.++++.+-. .|....-. |+|.+=+++++.++++ +.++..+.. +.++.. +..|..++ .....+
T Consensus 159 ~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~--gii~~~Gg~--~~~~~i-g~~yw~~pg~F~~gf 233 (541)
T COG0833 159 PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIIL--GIIIICGGG--PTHGYI-GFNYWHDPGAFAGGF 233 (541)
T ss_pred ChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHH--HHHHhcCCC--CCCCCc-ceeeecCCCCCCcch
Confidence 556788777777766655 46666665 5666666666654332 222222221 111111 11111011 112345
Q ss_pred HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh
Q 019490 98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM 151 (340)
Q Consensus 98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~ 151 (340)
.+....+-+..|||.|.=.+----.|-+||. |..+|+++...-=+..+|++
T Consensus 234 ~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~ 284 (541)
T COG0833 234 KGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYIL 284 (541)
T ss_pred HHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHH
Confidence 6777888889999999999888899999993 78999998888888888876
No 52
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.09 E-value=9.5 Score=36.01 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=46.8
Q ss_pred HHHHHH-HHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 99 RAFQAI-GDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 99 ~~~~~~-g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
+...+. ....++|.+.....-...+++|| |+.+|....+..++..+|...-...-..+|.+
T Consensus 179 ~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 179 PILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHH
Confidence 444333 36778888888888888888887 78999999999999999998766666666644
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=83.47 E-value=46 Score=32.59 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHHHHH-HHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhc----ccCCCCc
Q 019490 98 WRAFQAIGD-VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGNDAPG 166 (340)
Q Consensus 98 ~~~~~~~g~-~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~----fG~~v~~ 166 (340)
+....+++. +.+.-..-.+.+..-+-+|+| ++-.+....++.........+|.++-.. +|+...+
T Consensus 207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~ 276 (442)
T TIGR00800 207 WAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS 276 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 344444443 222233556778999999987 4444556666666666666777766655 7765433
No 54
>PRK11375 allantoin permease; Provisional
Probab=81.59 E-value=59 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhhhHHHHH
Q 019490 262 FNDFVGLIGAASFWPLTVYF 281 (340)
Q Consensus 262 ~~~visLvGs~~~~~l~fil 281 (340)
|.+++++.|++.++....++
T Consensus 373 f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 373 IYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88889988888877776654
No 55
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=80.51 E-value=3.6 Score=36.38 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHH---------hhhhhhhHHHHHHHHHHHHHhCCCc---chh--hHHHHHHHHHHHH
Q 019490 245 RTAYVIVSAVLAMIFPFFNDFVGLI---------GAASFWPLTVYFPVEMYIARTKIRR---FSF--TWVWLKILIWSCF 310 (340)
Q Consensus 245 r~~~~~~~~~iA~~iP~~~~visLv---------Gs~~~~~l~filP~l~~~~~~~~~~---~~~--~~~~~~~i~~~g~ 310 (340)
.-+..+.++++|..++.+|-++..+ ||.+|..++++= |+.+-+... +.. -.|+.|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3556677788888888888888775 888887777765 555533211 111 2456788889999
Q ss_pred HHHHHHHHH
Q 019490 311 IVSLVALVG 319 (340)
Q Consensus 311 ~~~v~Gt~~ 319 (340)
++.+-|++.
T Consensus 235 ll~lr~~i~ 243 (262)
T KOG4812|consen 235 LLFLRGFIN 243 (262)
T ss_pred HHHHHHHHh
Confidence 998888876
No 56
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=76.29 E-value=26 Score=34.12 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHhcc-cHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcc---hhhHHHHHHHHHHHHHHHHHH
Q 019490 241 RLVWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF---SFTWVWLKILIWSCFIVSLVA 316 (340)
Q Consensus 241 ~~~~r~~~~~~~~~iA~~iP-~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~---~~~~~~~~~i~~~g~~~~v~G 316 (340)
|............+.+...| -+-...+..|++.....+-++|.+++++-++...+ .+++.... ..-.++.+.|
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~---~~~~~v~~~G 400 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNF---LLLLLVLLFG 400 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCc---hhHHHHHHHH
Confidence 44444445555556666665 45667777888888899999999999887443222 22222222 1223344666
Q ss_pred HHHHHHHHH
Q 019490 317 LVGSVQGLI 325 (340)
Q Consensus 317 t~~si~~ii 325 (340)
+......+.
T Consensus 401 i~~~~~~~~ 409 (415)
T COG0814 401 ILVILSPFL 409 (415)
T ss_pred HHHHHHHHH
Confidence 655555444
No 57
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=63.94 E-value=1.1e+02 Score=32.21 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh-h--------hhcccCCCCcccccc
Q 019490 102 QAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM-G--------YLAFGNDAPGNFLTG 171 (340)
Q Consensus 102 ~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~-G--------Y~~fG~~v~~~il~n 171 (340)
.-+|++.=|-.|...=-.--.++|||+ |..+--...+..+...+|+...++ | ==.||+.+.++....
T Consensus 414 lLvgIfFPsVTGImaGSNrSGDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva 489 (1075)
T KOG2082|consen 414 LLVGIFFPSVTGIMAGSNRSGDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVA 489 (1075)
T ss_pred HHHHhhccccceeeecCCCCccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEE
Confidence 455555444445544455556778873 456666677777777777663322 2 224777777766433
No 58
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=57.06 E-value=33 Score=31.79 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
+..+.+.+.-...+.|.+-....-+...+++| ++..|....+......+|...-...-..||.+
T Consensus 173 g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 173 GIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 44566666666777888877788888888887 67888888888888887777666666666644
No 59
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=52.96 E-value=1.3e+02 Score=29.32 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490 239 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKI 292 (340)
Q Consensus 239 ~~~~~~r~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~ 292 (340)
.+|...|.+..+.+.++.+.+-+.+.++.+.+.+.+..+-+..++++.....|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 556667766666655555555599999999999988888888888887777665
No 60
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=49.06 E-value=51 Score=24.39 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q 019490 99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP 165 (340)
Q Consensus 99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~ 165 (340)
+.....|++..+-.|...+.+..++-.+|. .+-.|++.. ..++...-+..|++.|..|| ...
T Consensus 12 s~vli~GIiLL~~ACIFAfidFSK~~s~~~---~~~wRalSi-i~FIlG~vl~lGilifs~y~-~C~ 73 (91)
T PHA02680 12 SGVLICGVLLLTAACVFAFVDFSKNTSNVT---DYVWRALSV-TCFIVGAVLLLGLFVFSMYR-KCS 73 (91)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCCCCc---chhHHHHHH-HHHHHHHHHHHHHHHHHHhc-ccC
Confidence 344556777777778888888887665652 233344332 23333344567899999998 443
No 61
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=44.74 E-value=2.9e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=29.9
Q ss_pred chHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490 116 VLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 162 (340)
Q Consensus 116 ~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~ 162 (340)
..++..+-.|+| ++.-+....+......+...+|...-.+.|+
T Consensus 191 ~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 191 LIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 367777777766 5555666667777777777888777666654
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=44.06 E-value=3e+02 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=24.0
Q ss_pred ccchHhhHh-hhcCCCcchhhhHHHHHHHH---HHHHHHHHhhhhhhh
Q 019490 114 STVLVEIQD-TLKSSPPENKSMKRATAVGV---TTTTLFYIMCGVMGY 157 (340)
Q Consensus 114 ~~~~~~i~~-~m~~p~~~~~~~~~v~~~s~---~~~~~~y~~~g~~GY 157 (340)
-..+-.+.+ |++||+ |+.++....+. .....+|...+.+|-
T Consensus 197 ~iiv~~i~~~g~~~~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 197 IIVVNAIRSRGVTKPK---KITKYTIKAGLIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666 888873 55666666555 333444555555554
No 63
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=42.71 E-value=3.6e+02 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 019490 27 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 58 (340)
Q Consensus 27 ~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 58 (340)
+++.+.++..-+.+--++...|+..+=.+.+.
T Consensus 159 ~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~ 190 (493)
T COG0591 159 ILIGALIVALYTFLGGLRAVVWTDFIQGLIML 190 (493)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 44455666677777778888888775444333
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=38.72 E-value=1.9e+02 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.417 Sum_probs=20.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 019490 21 TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 58 (340)
Q Consensus 21 ~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 58 (340)
++...-+++...+.+..+..-=++...+...+=.+.++
T Consensus 118 i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~ 155 (406)
T PF00474_consen 118 IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMI 155 (406)
T ss_dssp --HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHH
Confidence 45555566677777777888888888888776555444
No 65
>PRK12768 CysZ-like protein; Reviewed
Probab=37.97 E-value=3e+02 Score=24.66 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=21.7
Q ss_pred HhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 019490 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 153 (340)
Q Consensus 121 ~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g 153 (340)
.+++.|| ++.+++..+...+..++...+
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 799999888888887777753
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=37.39 E-value=4.2e+02 Score=26.16 Aligned_cols=129 Identities=14% Similarity=0.137 Sum_probs=65.6
Q ss_pred ccCCCchhHHHHHHHHHHhhc--CCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCC-CcccccccccccccCcch
Q 019490 19 CYTSNNPLMIIFACIQIVLSQ--IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGP-HATTLTGTTVGVDVSASE 95 (340)
Q Consensus 19 ~~~~~~~~~~i~~~i~~pL~~--~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 95 (340)
.+.+...|+++.++++...+. .|-++.++..+..-....+.+. ++...+... .+..... .++
T Consensus 126 ~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l-------~~~~~~~~~~~~~~~~~-----~~~--- 190 (442)
T COG1457 126 TGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYL-------LALLFRSKGGLDALWVK-----GPT--- 190 (442)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccceeecc-----CCC---
Confidence 345667778888888877777 4677777777666555444321 111122111 0110000 011
Q ss_pred hHHHHHHHHHH-HHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 019490 96 KVWRAFQAIGD-VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 164 (340)
Q Consensus 96 ~~~~~~~~~g~-~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v 164 (340)
+..+...+++. +.+.-..........+-+++|++ +|.-.....+......+-+..|...-.+=|+..
T Consensus 191 ~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 191 SPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 11111122221 11222344566788888888732 233334445555556666677887777777665
No 67
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.78 E-value=40 Score=21.78 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 134 MKRATAVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 134 ~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
|..+...+..+..++..+.|..-|-+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 445566677777777777888888888855
No 68
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=29.75 E-value=3.1e+02 Score=25.47 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019490 299 WVWLKILIWSCFIVSLVALVGSVQGLIQSL 328 (340)
Q Consensus 299 ~~~~~~i~~~g~~~~v~Gt~~si~~ii~~~ 328 (340)
|.....+..+|++++..|.+.+++.-.+..
T Consensus 277 ~~~~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 277 FDECLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344566677777777777777766654
No 69
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=29.47 E-value=89 Score=24.56 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=11.3
Q ss_pred HHHHHHHhccccccccccc
Q 019490 320 SVQGLIQSLKTYKPFQAVQ 338 (340)
Q Consensus 320 si~~ii~~~~~~~~f~~~~ 338 (340)
..+.+.++++..++|+.++
T Consensus 42 ~~~~ll~~i~~~~~Fs~~n 60 (136)
T PF11188_consen 42 QLRRLLRNIQKGKPFSPEN 60 (136)
T ss_pred HHHHHHHHHHCCCcchHHH
Confidence 3455666666666666654
No 70
>PHA03048 IMV membrane protein; Provisional
Probab=28.43 E-value=1.2e+02 Score=22.53 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcc
Q 019490 101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGN 167 (340)
Q Consensus 101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~ 167 (340)
....|++..+-.|...+.+..++ +.+ .+-.|++.. ..++...-+..|++-|..||....++
T Consensus 14 vli~GIiLL~~aCIfAfidfsK~-k~~----~~~wRalsi-i~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 14 ALIGGIILLAASCIFAFVDFSKN-KAT----VTVWRALSG-IAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcC-CCc----chhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 34557777777777777888876 322 233344332 23334445668999999999776654
No 71
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=27.78 E-value=1.8e+02 Score=25.22 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCc----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490 263 NDFVGLIGAASFWPLTVYFPVEMYIARTKIRR----------FSFTWVWLKILIWSCFIVSLVALVGSVQGLIQ 326 (340)
Q Consensus 263 ~~visLvGs~~~~~l~filP~l~~~~~~~~~~----------~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii~ 326 (340)
+...-..|++.+.-+..++|+...+...|++- ++..-........+|++..+-.+.-|..++.+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555678888888999999999999877521 11222223344555555555555666666655
No 72
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=26.86 E-value=5.6e+02 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 019490 21 TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 58 (340)
Q Consensus 21 ~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 58 (340)
++...-+++.+++.+..+...-++...+.-.+=.+.++
T Consensus 114 i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~ 151 (407)
T TIGR00813 114 LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMI 151 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 34444455555566666777778888777776555443
No 73
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.78 E-value=1.1e+02 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=19.7
Q ss_pred hHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 019490 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 158 (340)
Q Consensus 120 i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~ 158 (340)
+.+--++| +++.|.++...+. +-..++|.+||.
T Consensus 20 vl~~~~KP--d~~Ef~~ia~~~~----iG~~i~G~iGf~ 52 (61)
T PRK09400 20 VLKVARKP--TREEFLLVAKVTG----LGILLIGLIGFI 52 (61)
T ss_pred HHHHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33444566 6788887765442 334556777774
No 74
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=26.40 E-value=1.4e+02 Score=24.95 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=35.8
Q ss_pred HhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHH-HHHHHHhhhhhhhhcccCCCC
Q 019490 109 FAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTT-TTLFYIMCGVMGYLAFGNDAP 165 (340)
Q Consensus 109 faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~-~~~~y~~~g~~GY~~fG~~v~ 165 (340)
-++......+.-++++++| ++... ...+.. =+++|.++|+.+|..+.++..
T Consensus 22 gs~~~~~~~~~wy~~L~kP-----~w~pp-~~~f~~vWtvLy~l~~iSa~lvW~~~~~ 73 (161)
T COG3476 22 GSFFISSRDPNWYNNLKKP-----FWLPP-EWAFPPVWTVLYALIGISAYLVWEKGPG 73 (161)
T ss_pred HHHHhccccHHHHHhccCC-----CCCCh-HHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455667778899999999 34333 233333 378899999999999965543
No 75
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=26.25 E-value=1.2e+02 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=19.4
Q ss_pred hhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 019490 122 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 159 (340)
Q Consensus 122 ~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~ 159 (340)
.--++| +++.|.++...+. +-+.++|++||.-
T Consensus 18 k~~~KP--d~~Ef~~iak~t~----iG~~i~G~IGf~I 49 (61)
T TIGR00327 18 AVCKKP--DLEEYLKVAKVTG----IGIIIVGIIGYII 49 (61)
T ss_pred HHhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344566 7788887765442 2345667777753
No 76
>CHL00020 psbN photosystem II protein N
Probab=26.01 E-value=53 Score=20.93 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 138 TAVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 138 ~~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
...+..+..++..+.|..-|-+||..
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCc
Confidence 44555666666666777777888854
No 77
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=25.86 E-value=2.8e+02 Score=20.49 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhCCCc
Q 019490 267 GLIGAASFWPLTVYFPVEMYIARTKIRR 294 (340)
Q Consensus 267 sLvGs~~~~~l~filP~l~~~~~~~~~~ 294 (340)
++.+...+..++++.|+.--.+.-+++.
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~ 29 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKD 29 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4667788899999999999888765443
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=25.56 E-value=6.7e+02 Score=24.88 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=17.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHH
Q 019490 22 SNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 55 (340)
Q Consensus 22 ~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~ 55 (340)
+...-+++.+.+.+.-+..-=++...+.-.+=.+
T Consensus 159 ~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 159 SYETALWAGAAATILYTFIGGFLAVSWTDTVQAS 192 (502)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333344444555555556666666665554433
No 79
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=23.99 E-value=4.4e+02 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCc
Q 019490 260 PFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRR 294 (340)
Q Consensus 260 P~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~ 294 (340)
|-++.+++=.|+... -.+++|.+.|..+.++.+
T Consensus 129 pl~~~i~~~~gAail--a~iviP~~~~y~ln~~~~ 161 (299)
T PF05884_consen 129 PLFGIIFGPFGAAIL--AYIVIPLIAYYYLNKEDG 161 (299)
T ss_pred HHHHHHhcchhHHHH--HHHHHHHHHHhhcccccC
Confidence 788888888888876 456789999987766443
No 80
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.64 E-value=3.4e+02 Score=22.46 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchHHHHHHHHHHHHHHHHhhhhcccch
Q 019490 132 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 203 (340)
Q Consensus 132 ~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p~ 203 (340)
|+.+|.+.+..=....+..++|+..-..+-++. ++ .|+-+ ..+|+-.+..+++.++-+.-+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 566777888777777777777776554554442 22 33322 1268888888888888877776665563
No 81
>PLN02680 carbon-monoxide oxygenase
Probab=22.63 E-value=4.1e+02 Score=23.67 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchHHHHHHHHHHHHHHHHhhhhcccc
Q 019490 132 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQP 202 (340)
Q Consensus 132 ~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p 202 (340)
|+.+|.+....=....+...+|+..-..+.|+. ++ .|+.+ ..+|+......++.+|.+.-+..+..|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfyS-lHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYS-LHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 567788888888888888888886655554442 33 33322 126887777777777777666544444
No 82
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.41 E-value=66 Score=20.52 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 139 AVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 139 ~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
..+..+..++-.+.|..-|-+||..
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCC
Confidence 3455566666667777778888854
No 83
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=21.57 E-value=3.3e+02 Score=23.00 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=6.9
Q ss_pred Hhhhhhh-hHHHHHHH
Q 019490 269 IGAASFW-PLTVYFPV 283 (340)
Q Consensus 269 vGs~~~~-~l~filP~ 283 (340)
.||.+|. .++|.+|.
T Consensus 76 LGa~ac~a~~~fmfpV 91 (201)
T COG5102 76 LGAGACSAFLYFMFPV 91 (201)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444 44455544
No 84
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=21.54 E-value=5.1e+02 Score=22.08 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490 272 ASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGL 324 (340)
Q Consensus 272 ~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~i 324 (340)
+..+...+.+|+.+.+..++.........+..-..++|++-.+---.+.+...
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~ 113 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSK 113 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999888777665332222222222235555554444333343333
No 85
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=21.25 E-value=8.4e+02 Score=24.45 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=68.6
Q ss_pred ccCCCchhHHHHHHHH-HHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCC--CcccccccccccccCcch
Q 019490 19 CYTSNNPLMIIFACIQ-IVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGP--HATTLTGTTVGVDVSASE 95 (340)
Q Consensus 19 ~~~~~~~~~~i~~~i~-~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (340)
.+.++-+|+..+..-. -.++..+-+++++++-.++......+ ..+..++...+... ..++.++- ......
T Consensus 165 lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~---~~gl~Iw~~~~a~g~~~~~~~p~~----~~~~~~ 237 (497)
T COG1953 165 LGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIA---MLGLAIWALVKAGGSSILGELPAG----TVSGSN 237 (497)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHH---HHHHHHHHHHhcCCcCccccCCCC----CCCcch
Confidence 3445555554333332 34445666888888777766665542 33344443332211 11122210 011122
Q ss_pred hHHHHHHHHHHHHHhh-cCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh----hhhhhhhcccCCCCc--cc
Q 019490 96 KVWRAFQAIGDVAFAY-AFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM----CGVMGYLAFGNDAPG--NF 168 (340)
Q Consensus 96 ~~~~~~~~~g~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~----~g~~GY~~fG~~v~~--~i 168 (340)
..|..+.++...+=.| ....|.|..-+.-|+| ++-.+.-.++..+.+.++.+ .+..++..||+..-+ ++
T Consensus 238 ~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di 313 (497)
T COG1953 238 SSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDI 313 (497)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHH
Confidence 2333333332211111 2445678887777776 33322223344444444444 444578889999755 66
Q ss_pred ccccC
Q 019490 169 LTGFG 173 (340)
Q Consensus 169 l~nl~ 173 (340)
+.+++
T Consensus 314 ~~~~~ 318 (497)
T COG1953 314 VARFL 318 (497)
T ss_pred HHHhc
Confidence 67765
No 86
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.58 E-value=6.3e+02 Score=22.71 Aligned_cols=50 Identities=4% Similarity=-0.009 Sum_probs=31.2
Q ss_pred HhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccC
Q 019490 118 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG 173 (340)
Q Consensus 118 ~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~ 173 (340)
..=.+.+++| ++.+.......+..++|...-..++-.++|.. +.++..+|
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 3334566776 68888888888888877776444444444433 44444555
No 87
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=20.57 E-value=5.3e+02 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019490 302 LKILIWSCFIVSLVALVGSVQGLIQSL 328 (340)
Q Consensus 302 ~~~i~~~g~~~~v~Gt~~si~~ii~~~ 328 (340)
...++.+|++++..|.+.+++.-.+.+
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~ 306 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677788888888877766655
Done!