Query 019490
Match_columns 340
No_of_seqs 135 out of 1263
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.3 2.5E-05 8.6E-10 74.7 18.1 63 97-162 190-252 (445)
2 4djk_A Probable glutamate/gamm 98.0 0.00031 1.1E-08 68.3 18.4 59 102-163 205-263 (511)
3 3gia_A Uncharacterized protein 97.7 0.00085 2.9E-08 63.9 15.9 61 97-160 187-247 (444)
4 2jln_A MHP1; hydantoin, transp 69.7 15 0.0005 35.3 8.5 32 25-57 144-175 (501)
5 3dh4_A Sodium/glucose cotransp 42.7 2.3E+02 0.0079 27.0 16.7 38 21-58 131-168 (530)
6 3mp7_B Preprotein translocase 26.1 80 0.0027 20.8 3.7 31 122-158 20-50 (61)
7 2xq2_A Sodium/glucose cotransp 22.9 5.1E+02 0.018 24.9 12.2 40 246-285 404-443 (593)
8 2a65_A Leutaa, Na(+):neurotran 12.9 8.6E+02 0.029 23.1 15.3 28 99-126 243-271 (519)
9 3tx3_A Uncharacterized protein 9.7 7.9E+02 0.027 20.7 10.8 38 122-164 22-59 (249)
10 2y8t_B RON2, rhoptry NECK prot 5.6 3.5E+02 0.012 15.1 1.8 19 322-340 3-21 (37)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.32 E-value=2.5e-05 Score=74.68 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 162 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~ 162 (340)
..+...++....|+|.|........+|+||| +|+.+|.+..+...++.+|++.........+.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4467788899999999999999999999998 36899999999999999999987765555543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.99 E-value=0.00031 Score=68.30 Aligned_cols=59 Identities=5% Similarity=0.004 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490 102 QAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND 163 (340)
Q Consensus 102 ~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~ 163 (340)
.++....|+|.|.-.....-+|+|||+ |+.+|++..+..+++++|++..+.-....+++
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 456678999999999999999999994 68999999999999999999877666555543
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.71 E-value=0.00085 Score=63.94 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 019490 97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF 160 (340)
Q Consensus 97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~f 160 (340)
..+.+.++....++|.|.-......+|+||| +|+.+|.+..+...++.+|...........
T Consensus 187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~ 247 (444)
T 3gia_A 187 VSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNL 247 (444)
T ss_dssp HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3467788888899999999999999999999 367999999999999999998766544443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=69.69 E-value=15 Score=35.32 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHH
Q 019490 25 PLMIIFACIQIVLSQIPNFHKLSWLSILAAVMS 57 (340)
Q Consensus 25 ~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~ 57 (340)
.+++++.++.+++.+. -++.++++..++....
T Consensus 144 v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~ 175 (501)
T 2jln_A 144 LWIVIFGAIQVVTTFY-GITFIRWMNVFASPVL 175 (501)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 4456666666777754 3666666666554433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=42.66 E-value=2.3e+02 Score=26.98 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=18.1
Q ss_pred CCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHH
Q 019490 21 TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 58 (340)
Q Consensus 21 ~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~ 58 (340)
++...-+++.+++...-+...=++...+.-.+=.+.++
T Consensus 131 i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 131 IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 44444455555555666677777777777766554443
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.05 E-value=80 Score=20.83 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=18.1
Q ss_pred hhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 019490 122 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 158 (340)
Q Consensus 122 ~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~ 158 (340)
+--++| +++.|.++...+.. -..++|.+||.
T Consensus 20 k~~~KP--d~~Ef~~iak~~~i----G~~i~G~iGf~ 50 (61)
T 3mp7_B 20 LVTKKP--NWATYKRAAKITGL----GIILIGLIGML 50 (61)
T ss_dssp HHSCCC--CTTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344566 77888887655432 23445666664
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=22.89 E-value=5.1e+02 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHH
Q 019490 246 TAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEM 285 (340)
Q Consensus 246 ~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~ 285 (340)
.++.+++.++|....+.+.+++++....+....-++|+++
T Consensus 404 v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~l 443 (593)
T 2xq2_A 404 VVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVFL 443 (593)
T ss_dssp HHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344445556655455556666554444433333445544
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=12.86 E-value=8.6e+02 Score=23.06 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcC-ccchHhhHhhhcC
Q 019490 99 RAFQAIGDVAFAYAF-STVLVEIQDTLKS 126 (340)
Q Consensus 99 ~~~~~~g~~~faf~~-~~~~~~i~~~m~~ 126 (340)
....+.+.+.|+... -+.+...-+-+++
T Consensus 243 vw~~A~gQ~FFSLslG~G~~ity~SY~~~ 271 (519)
T 2a65_A 243 VWIAAVGQIFFTLSLGFGAIITYASYVRK 271 (519)
T ss_dssp HHHHHHHHHHHHHTTTSSHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHhHHHHhHHhhhhcccCC
Confidence 345888999999984 4444444444443
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=9.69 E-value=7.9e+02 Score=20.70 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=23.9
Q ss_pred hhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 019490 122 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA 164 (340)
Q Consensus 122 ~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v 164 (340)
+.+.+| ++++.+.....+..++|.......+...++.+
T Consensus 22 ~~i~~p-----~lr~~vl~Pllinl~L~~~~~~~~~~~~~~~i 59 (249)
T 3tx3_A 22 ELIRTK-----GLRRYVVVPILTNLILFSLAFTWLYGEVDYWL 59 (249)
T ss_dssp HHHTST-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666 68888888888888877665444433444443
No 10
>2y8t_B RON2, rhoptry NECK protein 2; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8s_B*
Probab=5.61 E-value=3.5e+02 Score=15.07 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHhccccccccccccC
Q 019490 322 QGLIQSLKTYKPFQAVQEE 340 (340)
Q Consensus 322 ~~ii~~~~~~~~f~~~~~~ 340 (340)
.+-++++....|-||..||
T Consensus 3 vqhmediggappvscvtne 21 (37)
T 2y8t_B 3 VQHMEDIGGAPPVSCVTNE 21 (37)
T ss_dssp HHHHHHTTCCCCCSEEEET
T ss_pred HHHHHHcCCCCChhhhhhh
Confidence 3456677778888888765
Done!