Query 019490
Match_columns 340
No_of_seqs 135 out of 1263
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 16:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019490.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019490hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 27.0 25 0.0018 21.3 2.8 31 123-159 14-44 (56)
2 d1v54d_ f.23.1.1 (D:) Mitochon 5.6 3.7E+02 0.027 19.0 4.5 30 119-151 63-92 (144)
3 d1q90r_ f.23.12.1 (R:) ISP sub 4.8 2.9E+02 0.021 14.9 2.9 17 269-285 18-34 (39)
4 d1ciya3 f.1.3.1 (A:33-255) del 4.6 2.7E+02 0.02 21.1 3.4 29 245-273 5-33 (223)
5 d1a1ia3 g.37.1.1 (A:160-187) Z 4.3 94 0.0068 15.6 0.2 7 332-338 2-8 (28)
6 d1dlca3 f.1.3.1 (A:61-289) del 3.4 3.3E+02 0.024 20.6 2.9 36 244-283 6-42 (229)
7 d1v54j_ f.23.4.1 (J:) Mitochon 3.2 5E+02 0.037 15.2 3.0 18 310-327 36-53 (58)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.2 8.5E+02 0.062 18.6 5.5 46 107-159 89-134 (261)
9 d1y5ic1 f.21.3.1 (C:1-225) Res 3.1 8.6E+02 0.063 17.7 6.1 28 265-292 89-116 (225)
10 d2gmha3 d.58.1.6 (A:483-584) E 2.7 90 0.0065 21.1 -1.2 22 5-26 67-88 (102)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.98 E-value=25 Score=21.32 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=18.1
Q ss_pred hhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 019490 123 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 159 (340)
Q Consensus 123 ~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~ 159 (340)
--++| +++.|.++...+- +=..++|.+||.-
T Consensus 14 ~~~KP--~~~Ef~~ia~v~~----iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 14 VLKKP--TKDEYLAVAKVTA----LGISLLGIIGYII 44 (56)
T ss_dssp SEECC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34556 7788887765442 2244566666653
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.59 E-value=3.7e+02 Score=19.01 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=17.3
Q ss_pred hhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh
Q 019490 119 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM 151 (340)
Q Consensus 119 ~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~ 151 (340)
+-+.||..|+ ..++.++...+..+.+...+
T Consensus 63 ~t~ae~~~p~---gewK~v~g~~~~~i~~s~~i 92 (144)
T d1v54d_ 63 ESFAEMNRST---NEWKTVVGAAMFFIGFTALL 92 (144)
T ss_dssp SCHHHHTCCC---SHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCC---CchhHHHHHHHHHHHHHHHH
Confidence 3567888774 46777766554444433333
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.79 E-value=2.9e+02 Score=14.89 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=9.4
Q ss_pred HhhhhhhhHHHHHHHHH
Q 019490 269 IGAASFWPLTVYFPVEM 285 (340)
Q Consensus 269 vGs~~~~~l~filP~l~ 285 (340)
+|+++........|-..
T Consensus 18 ~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGA 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeE
Confidence 45555555555555443
No 4
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.56 E-value=2.7e+02 Score=21.10 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhhhh
Q 019490 245 RTAYVIVSAVLAMIFPFFNDFVGLIGAAS 273 (340)
Q Consensus 245 r~~~~~~~~~iA~~iP~~~~visLvGs~~ 273 (340)
-+.+-++.++++.++|..|.+++++|-+-
T Consensus 5 ~i~~~~~~~ll~~~iP~~g~~~~li~~lw 33 (223)
T d1ciya3 5 DISLSLTQFLLSEFVPGAGFVLGLVDIIW 33 (223)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhhhcCCchHHHHHHHHHHc
Confidence 34566778888888999998887665543
No 5
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.33 E-value=94 Score=15.57 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=5.3
Q ss_pred ccccccc
Q 019490 332 KPFQAVQ 338 (340)
Q Consensus 332 ~~f~~~~ 338 (340)
+||+|+.
T Consensus 2 kPf~C~~ 8 (28)
T d1a1ia3 2 KPFACDI 8 (28)
T ss_dssp CCEECTT
T ss_pred CCcccch
Confidence 6888874
No 6
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=3.36 E-value=3.3e+02 Score=20.62 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHhhhhhhhHHHHHHH
Q 019490 244 WRTAYVIVSAVLAM-IFPFFNDFVGLIGAASFWPLTVYFPV 283 (340)
Q Consensus 244 ~r~~~~~~~~~iA~-~iP~~~~visLvGs~~~~~l~filP~ 283 (340)
+.+++-++..+++. .+|..+.++++.+.+ +.++.|.
T Consensus 6 v~~~~~i~~~il~~~~~P~~g~~~~~~~~i----~~~lwP~ 42 (229)
T d1dlca3 6 IQKGISVVGDLLGVVGFPFGGALVSFYTNF----LNTIWPS 42 (229)
T ss_dssp HHHHHHHHHHHTTSCBSCCHHHHHHHHHHH----HHHTSSS
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHhCCC
Confidence 34455555555444 369888877765544 5555664
No 7
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.23 E-value=5e+02 Score=15.19 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 019490 310 FIVSLVALVGSVQGLIQS 327 (340)
Q Consensus 310 ~~~~v~Gt~~si~~ii~~ 327 (340)
..+++.|+..+++.+...
T Consensus 36 m~L~~~G~~~s~~~l~~a 53 (58)
T d1v54j_ 36 MTLCLGGTLYSLYCLGWA 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678888888877654
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.20 E-value=8.5e+02 Score=18.61 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=24.9
Q ss_pred HHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 019490 107 VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 159 (340)
Q Consensus 107 ~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~ 159 (340)
+...-..|..--=.+++-|+| +...+.. -.....+-+..|+.||..
T Consensus 89 ~~~~~~lH~~r~~~~gsy~~p----re~~W~~---Gv~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 89 FFMVMFMHMAKGLYYGSYRSP----RVTLWNV---GVIIFILTIATAFLGYCC 134 (261)
T ss_dssp HHHHHHHHHHHHHHHTTTSTT----CHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCc----cchhHHh---hHHHHHHHHHHHHhhhhc
Confidence 333334555555566666766 4454433 333444455667777765
No 9
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=8.6e+02 Score=17.71 Aligned_cols=28 Identities=11% Similarity=-0.234 Sum_probs=13.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490 265 FVGLIGAASFWPLTVYFPVEMYIARTKI 292 (340)
Q Consensus 265 visLvGs~~~~~l~filP~l~~~~~~~~ 292 (340)
+....|.+++.....-+=.+++-+...+
T Consensus 89 ~~~~~g~i~g~l~liG~~~ll~RR~~~~ 116 (225)
T d1y5ic1 89 MAMFAGGASGVLCLIGGVLLLKRRLFSP 116 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555555444443334445555443
No 10
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.70 E-value=90 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=15.9
Q ss_pred eccccccccCCCCcccCCCchh
Q 019490 5 KRSNCFHRHGHHVKCYTSNNPL 26 (340)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (340)
.-.||.|+..|+.+|-.....|
T Consensus 67 n~~nCleC~tC~i~~p~~nI~W 88 (102)
T d2gmha3 67 NAQNCVHCKTCDIKDPSQNINW 88 (102)
T ss_dssp CGGGCCCCCHHHHHCTTCCEEE
T ss_pred EeCCceeeccceeeCCCCceEE
Confidence 4579999999887776544444
Done!