BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019491
         (340 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54EN4|PDI2_DICDI Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2
           PE=3 SV=1
          Length = 513

 Score = 38.5 bits (88), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFP 309
           H +   M+ A WC HC   K ++  EA KQL+  +         T+  + C   K++G+P
Sbjct: 58  HDVTLVMFYAPWCGHCKTLKPLY-EEAAKQLSANKKIAIAKVDCTQHEQLCKQNKVQGYP 116

Query: 310 TWVI--NGQVLSGEQDLSDLAKASGFPEMSQPS 340
           T V+  NG+    E D +  +      E  +P+
Sbjct: 117 TLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPT 149


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 36.6 bits (83), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 218 LSSSVAEANLPFFETEITTSSSPFALSLAKHLHAIGAKMYGAFW-CSHCLEQKQ---MFG 273
           L+ SVA ANL  FE E T       + L K       +    FW   H  + +Q   M G
Sbjct: 329 LACSVALANLEVFEEERTLEKLQPKIKLLK-------ERLQEFWELKHVGDVRQLGFMAG 381

Query: 274 SEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 305
            E VK     E FP G R G K+A  C +  +
Sbjct: 382 IELVKDKEKGEPFPYGERTGFKVAYKCREKGV 413


>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo
           sapiens GN=MED24 PE=1 SV=1
          Length = 989

 Score = 32.7 bits (73), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 169 TSALLSFSLFFISLKEFSV---EEIQK---VLGVQLCIASLVVAALSTSYSSIQPLSSSV 222
           T  L SF+  FI+L EF+    EE  K   V  +   I+ L++  ++ +Y S   LS S 
Sbjct: 458 TGKLKSFARKFINLNEFTTYGSEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESR 517

Query: 223 AEANLPFFETEITT 236
             A +PFFET + T
Sbjct: 518 TGAEVPFFETWMQT 531


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,071,837
Number of Sequences: 539616
Number of extensions: 4595870
Number of successful extensions: 12553
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12540
Number of HSP's gapped (non-prelim): 30
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)