Query 019491
Match_columns 340
No_of_seqs 260 out of 560
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 99.9 2.2E-23 4.7E-28 181.3 13.4 117 62-184 4-141 (142)
2 PRK14889 VKOR family protein; 99.8 1.5E-20 3.4E-25 164.1 12.7 121 63-185 9-141 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.8 4.5E-20 9.7E-25 158.6 9.0 119 64-184 3-137 (137)
4 COG4243 Predicted membrane pro 99.8 1.4E-18 2.9E-23 153.1 11.1 120 62-187 11-150 (156)
5 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 5.4E-14 1.2E-18 113.1 7.9 71 253-331 21-101 (101)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.5 1E-13 2.2E-18 116.5 7.7 74 250-331 29-113 (113)
7 cd02996 PDI_a_ERp44 PDIa famil 99.5 2.6E-13 5.7E-18 110.5 8.6 70 254-331 22-108 (108)
8 KOG0190 Protein disulfide isom 99.4 1.2E-13 2.5E-18 141.3 5.1 76 250-333 42-130 (493)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 6.6E-13 1.4E-17 106.9 8.1 72 252-331 21-104 (104)
10 cd02994 PDI_a_TMX PDIa family, 99.4 1.1E-12 2.3E-17 105.2 8.5 77 247-331 13-99 (101)
11 PF00085 Thioredoxin: Thioredo 99.4 3.9E-12 8.5E-17 100.4 8.9 73 251-331 18-100 (103)
12 cd03002 PDI_a_MPD1_like PDI fa 99.3 2.2E-12 4.7E-17 104.1 7.3 73 253-331 21-108 (109)
13 cd03007 PDI_a_ERp29_N PDIa fam 99.3 2.8E-12 6E-17 108.8 7.5 78 253-333 21-114 (116)
14 cd02999 PDI_a_ERp44_like PDIa 99.3 3.7E-12 8.1E-17 103.8 7.6 72 253-331 21-100 (100)
15 cd03005 PDI_a_ERp46 PDIa famil 99.3 4.1E-12 8.8E-17 101.0 7.1 71 253-331 19-102 (102)
16 cd02956 ybbN ybbN protein fami 99.3 1.1E-11 2.3E-16 98.2 8.9 71 253-331 15-95 (96)
17 cd02993 PDI_a_APS_reductase PD 99.3 9.3E-12 2E-16 102.1 8.3 74 251-331 22-109 (109)
18 cd03001 PDI_a_P5 PDIa family, 99.3 1.2E-11 2.5E-16 98.5 8.0 71 253-331 21-102 (103)
19 TIGR00411 redox_disulf_1 small 99.3 1.6E-11 3.5E-16 94.2 7.7 72 253-332 2-79 (82)
20 PTZ00443 Thioredoxin domain-co 99.2 6.2E-11 1.3E-15 110.8 11.8 72 252-331 54-135 (224)
21 cd02963 TRX_DnaJ TRX domain, D 99.2 2.2E-11 4.7E-16 100.7 7.6 74 251-332 25-109 (111)
22 PHA02278 thioredoxin-like prot 99.2 8.3E-11 1.8E-15 97.3 9.8 85 243-331 5-101 (103)
23 cd03000 PDI_a_TMX3 PDIa family 99.2 3.2E-11 7E-16 97.7 7.1 74 251-332 16-101 (104)
24 PHA02125 thioredoxin-like prot 99.2 6.4E-11 1.4E-15 91.6 8.4 69 254-332 2-74 (75)
25 cd02998 PDI_a_ERp38 PDIa famil 99.2 3.1E-11 6.7E-16 95.8 6.6 73 252-331 20-105 (105)
26 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 3.8E-11 8.3E-16 95.3 7.0 72 251-331 19-104 (104)
27 PTZ00102 disulphide isomerase; 99.2 1.4E-10 3E-15 116.3 11.2 75 251-333 50-136 (477)
28 cd02997 PDI_a_PDIR PDIa family 99.2 1.1E-10 2.4E-15 92.9 8.2 74 252-331 19-104 (104)
29 cd02992 PDI_a_QSOX PDIa family 99.1 1.4E-10 3.1E-15 96.6 7.7 73 252-330 21-111 (114)
30 cd02985 TRX_CDSP32 TRX family, 99.1 2.5E-10 5.5E-15 93.0 7.9 78 251-334 16-102 (103)
31 cd02948 TRX_NDPK TRX domain, T 99.1 4.4E-10 9.5E-15 91.3 9.1 68 254-331 21-99 (102)
32 PRK09381 trxA thioredoxin; Pro 99.1 4.5E-10 9.8E-15 91.2 8.9 73 251-331 22-104 (109)
33 TIGR02196 GlrX_YruB Glutaredox 99.1 3.5E-10 7.5E-15 83.8 6.6 70 254-331 2-73 (74)
34 TIGR01126 pdi_dom protein disu 99.0 6.6E-10 1.4E-14 87.6 7.8 70 254-331 17-98 (102)
35 cd02947 TRX_family TRX family; 99.0 1.1E-09 2.3E-14 83.0 8.4 73 251-331 11-92 (93)
36 KOG4277 Uncharacterized conser 99.0 1.4E-10 3E-15 112.5 3.7 72 254-333 47-130 (468)
37 cd03065 PDI_b_Calsequestrin_N 99.0 8.1E-10 1.8E-14 94.1 7.6 79 245-331 19-115 (120)
38 cd02961 PDI_a_family Protein D 99.0 1.3E-09 2.9E-14 84.3 7.5 80 244-331 7-101 (101)
39 PRK10996 thioredoxin 2; Provis 99.0 2.5E-09 5.3E-14 92.2 9.6 73 252-332 54-136 (139)
40 KOG0190 Protein disulfide isom 99.0 5.2E-10 1.1E-14 114.7 6.3 75 252-336 386-474 (493)
41 TIGR01068 thioredoxin thioredo 99.0 2E-09 4.3E-14 84.4 8.1 73 252-332 16-98 (101)
42 TIGR00424 APS_reduc 5'-adenyly 99.0 9.6E-10 2.1E-14 112.5 7.9 75 252-332 373-460 (463)
43 cd02950 TxlA TRX-like protein 99.0 1.6E-09 3.5E-14 93.8 8.1 81 246-332 16-107 (142)
44 TIGR01130 ER_PDI_fam protein d 99.0 1.5E-09 3.3E-14 107.3 8.8 73 253-333 21-107 (462)
45 cd02949 TRX_NTR TRX domain, no 99.0 3.2E-09 7E-14 85.1 8.9 71 253-331 16-96 (97)
46 cd02953 DsbDgamma DsbD gamma f 99.0 2.5E-09 5.4E-14 86.3 7.9 77 251-331 12-103 (104)
47 PRK00293 dipZ thiol:disulfide 98.9 3.9E-08 8.4E-13 103.1 18.6 83 246-332 470-567 (571)
48 PLN02309 5'-adenylylsulfate re 98.9 2.1E-09 4.5E-14 109.9 8.9 76 250-332 365-454 (457)
49 cd02975 PfPDO_like_N Pyrococcu 98.9 3.2E-09 6.9E-14 88.5 8.3 79 245-331 15-106 (113)
50 PTZ00051 thioredoxin; Provisio 98.9 4.2E-09 9.2E-14 83.5 8.3 69 252-329 20-97 (98)
51 cd02962 TMX2 TMX2 family; comp 98.9 7.9E-09 1.7E-13 91.3 10.7 71 254-332 51-149 (152)
52 cd02984 TRX_PICOT TRX domain, 98.9 7.4E-09 1.6E-13 81.8 9.3 74 251-331 15-96 (97)
53 KOG0191 Thioredoxin/protein di 98.9 1.7E-09 3.7E-14 107.2 5.8 84 242-333 39-132 (383)
54 cd02973 TRX_GRX_like Thioredox 98.9 3.1E-09 6.8E-14 79.3 5.6 62 253-320 2-66 (67)
55 PTZ00102 disulphide isomerase; 98.9 3.3E-09 7.2E-14 106.3 7.4 76 252-335 377-465 (477)
56 cd02951 SoxW SoxW family; SoxW 98.9 1E-08 2.2E-13 85.5 9.0 90 242-331 5-115 (125)
57 cd02954 DIM1 Dim1 family; Dim1 98.8 5.7E-09 1.2E-13 88.4 6.3 56 253-316 17-79 (114)
58 KOG1731 FAD-dependent sulfhydr 98.8 2.8E-09 6.1E-14 110.2 5.0 68 253-326 60-144 (606)
59 cd02965 HyaE HyaE family; HyaE 98.8 1.1E-08 2.4E-13 86.4 7.2 68 254-329 31-110 (111)
60 TIGR00412 redox_disulf_2 small 98.8 1.4E-08 3E-13 79.1 7.2 68 256-332 4-76 (76)
61 TIGR02180 GRX_euk Glutaredoxin 98.8 1.2E-08 2.5E-13 78.6 5.9 73 254-328 1-75 (84)
62 TIGR02187 GlrX_arch Glutaredox 98.8 2E-08 4.4E-13 92.1 8.4 75 251-331 134-212 (215)
63 TIGR01295 PedC_BrcD bacterioci 98.8 2.6E-08 5.7E-13 84.5 8.4 81 251-331 24-120 (122)
64 TIGR02187 GlrX_arch Glutaredox 98.7 2.4E-08 5.2E-13 91.7 7.8 74 251-330 20-106 (215)
65 cd02989 Phd_like_TxnDC9 Phosdu 98.7 3.2E-08 7E-13 82.5 7.8 57 252-316 24-86 (113)
66 cd02957 Phd_like Phosducin (Ph 98.7 1.9E-08 4.1E-13 83.2 6.0 62 252-322 26-96 (113)
67 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 3.5E-08 7.7E-13 79.5 7.2 81 243-329 4-88 (89)
68 PF13098 Thioredoxin_2: Thiore 98.7 1.6E-08 3.4E-13 82.1 5.0 81 251-331 6-112 (112)
69 COG3118 Thioredoxin domain-con 98.6 7.2E-08 1.6E-12 93.4 7.7 88 238-333 30-128 (304)
70 cd02976 NrdH NrdH-redoxin (Nrd 98.6 1.8E-07 3.8E-12 69.2 6.9 71 254-330 2-72 (73)
71 KOG0912 Thiol-disulfide isomer 98.6 5E-08 1.1E-12 94.9 4.7 77 251-335 14-106 (375)
72 KOG0191 Thioredoxin/protein di 98.5 8.1E-08 1.8E-12 95.3 5.4 81 246-334 158-251 (383)
73 TIGR02200 GlrX_actino Glutared 98.5 3.6E-07 7.8E-12 68.9 6.7 72 254-330 2-74 (77)
74 TIGR01130 ER_PDI_fam protein d 98.5 2.2E-07 4.8E-12 92.0 6.9 75 252-336 366-455 (462)
75 KOG0907 Thioredoxin [Posttrans 98.5 3.5E-07 7.7E-12 76.4 6.6 72 251-331 22-102 (106)
76 TIGR02189 GlrX-like_plant Glut 98.5 4.1E-07 9E-12 74.6 6.6 80 247-328 3-82 (99)
77 PHA03050 glutaredoxin; Provisi 98.5 7E-07 1.5E-11 74.7 7.9 84 244-328 5-90 (108)
78 cd03419 GRX_GRXh_1_2_like Glut 98.4 5.5E-07 1.2E-11 69.2 6.0 74 254-329 2-75 (82)
79 cd02959 ERp19 Endoplasmic reti 98.4 7.3E-07 1.6E-11 75.0 6.8 72 240-316 9-88 (117)
80 PLN00410 U5 snRNP protein, DIM 98.4 2E-06 4.3E-11 75.6 9.2 70 254-331 27-116 (142)
81 KOG0910 Thioredoxin-like prote 98.4 1.2E-06 2.6E-11 77.6 7.7 86 238-331 49-144 (150)
82 PRK11200 grxA glutaredoxin 1; 98.4 8.3E-07 1.8E-11 69.9 6.0 73 253-329 2-80 (85)
83 cd02952 TRP14_like Human TRX-r 98.4 1.4E-06 3.1E-11 74.2 7.7 78 252-330 23-117 (119)
84 TIGR02181 GRX_bact Glutaredoxi 98.4 7.3E-07 1.6E-11 68.8 5.4 71 254-329 1-71 (79)
85 TIGR02190 GlrX-dom Glutaredoxi 98.3 8.3E-07 1.8E-11 69.2 5.3 68 251-324 7-74 (79)
86 cd02066 GRX_family Glutaredoxi 98.3 7.3E-07 1.6E-11 65.3 4.7 70 254-328 2-71 (72)
87 cd03010 TlpA_like_DsbE TlpA-li 98.3 1.7E-06 3.7E-11 71.9 7.2 77 243-327 18-126 (127)
88 PF00462 Glutaredoxin: Glutare 98.3 7.5E-07 1.6E-11 65.6 4.1 59 254-317 1-59 (60)
89 cd03418 GRX_GRXb_1_3_like Glut 98.3 1.7E-06 3.7E-11 65.6 5.7 71 254-329 2-73 (75)
90 TIGR02194 GlrX_NrdH Glutaredox 98.3 2.6E-06 5.7E-11 65.1 6.6 71 254-330 1-71 (72)
91 cd03027 GRX_DEP Glutaredoxin ( 98.2 1.1E-06 2.5E-11 67.1 4.2 70 254-328 3-72 (73)
92 TIGR02183 GRXA Glutaredoxin, G 98.2 2E-06 4.3E-11 68.4 5.7 74 254-329 2-79 (86)
93 PRK03147 thiol-disulfide oxido 98.2 6.3E-06 1.4E-10 71.6 8.8 90 242-331 53-168 (173)
94 cd02982 PDI_b'_family Protein 98.2 2.9E-06 6.2E-11 67.6 6.0 74 251-332 13-100 (103)
95 cd02987 Phd_like_Phd Phosducin 98.2 3.5E-06 7.5E-11 75.9 7.0 70 253-331 86-171 (175)
96 TIGR02740 TraF-like TraF-like 98.2 5.8E-06 1.3E-10 79.3 8.4 89 243-331 159-260 (271)
97 TIGR00365 monothiol glutaredox 98.2 6.1E-06 1.3E-10 67.4 7.2 81 244-329 4-89 (97)
98 PRK14018 trifunctional thiored 98.1 1.1E-05 2.4E-10 84.0 10.3 82 251-332 57-170 (521)
99 cd02955 SSP411 TRX domain, SSP 98.1 7.1E-06 1.5E-10 70.3 7.1 77 239-316 4-92 (124)
100 COG0695 GrxC Glutaredoxin and 98.1 9.6E-06 2.1E-10 64.2 7.3 73 253-331 2-77 (80)
101 PRK15412 thiol:disulfide inter 98.1 4.4E-05 9.6E-10 68.6 12.3 81 251-331 69-172 (185)
102 TIGR00385 dsbE periplasmic pro 98.1 2.3E-05 5E-10 69.5 10.3 73 251-331 64-167 (173)
103 TIGR02738 TrbB type-F conjugat 98.1 1.5E-05 3.3E-10 70.4 9.0 82 250-331 50-149 (153)
104 cd03029 GRX_hybridPRX5 Glutare 98.1 6.6E-06 1.4E-10 62.5 5.6 70 253-331 2-71 (72)
105 smart00594 UAS UAS domain. 98.1 1.8E-05 3.9E-10 66.7 8.4 97 231-331 8-121 (122)
106 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 1.1E-05 2.5E-10 66.2 6.9 86 243-330 13-121 (123)
107 PRK10638 glutaredoxin 3; Provi 98.1 8.3E-06 1.8E-10 64.0 5.7 72 253-329 3-74 (83)
108 PRK10329 glutaredoxin-like pro 98.0 2.1E-05 4.6E-10 62.3 7.7 71 254-331 3-73 (81)
109 cd03028 GRX_PICOT_like Glutare 98.0 8.2E-06 1.8E-10 65.4 5.2 78 247-329 3-85 (90)
110 PF13192 Thioredoxin_3: Thiore 98.0 1.1E-05 2.4E-10 62.6 5.7 70 254-331 3-75 (76)
111 cd02988 Phd_like_VIAF Phosduci 98.0 1.8E-05 3.9E-10 72.4 7.3 69 254-331 106-188 (192)
112 cd02986 DLP Dim1 family, Dim1- 98.0 1.4E-05 3E-10 67.9 5.8 56 253-316 17-79 (114)
113 cd02966 TlpA_like_family TlpA- 98.0 1.6E-05 3.4E-10 62.2 5.5 74 243-316 12-109 (116)
114 cd02958 UAS UAS family; UAS is 97.9 5.3E-05 1.2E-09 62.5 7.6 88 240-331 7-107 (114)
115 cd03009 TryX_like_TryX_NRX Try 97.9 2E-05 4.3E-10 65.9 5.0 75 242-316 10-111 (131)
116 cd03023 DsbA_Com1_like DsbA fa 97.8 0.00012 2.5E-09 61.5 8.3 35 297-331 119-153 (154)
117 PF13899 Thioredoxin_7: Thiore 97.8 3.9E-05 8.6E-10 59.9 5.0 33 240-272 7-39 (82)
118 cd01659 TRX_superfamily Thiore 97.8 5.1E-05 1.1E-09 51.7 4.9 56 254-314 1-60 (69)
119 PTZ00062 glutaredoxin; Provisi 97.7 0.00011 2.5E-09 68.0 8.2 62 254-330 21-89 (204)
120 TIGR03143 AhpF_homolog putativ 97.7 9.1E-05 2E-09 77.3 8.4 85 240-332 465-555 (555)
121 cd02964 TryX_like_family Trypa 97.7 6.7E-05 1.4E-09 63.3 5.9 76 241-316 8-111 (132)
122 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 8.4E-05 1.8E-09 67.1 4.8 35 296-330 161-196 (197)
123 COG4232 Thiol:disulfide interc 97.5 0.0025 5.4E-08 67.1 15.6 88 240-331 464-564 (569)
124 PRK13728 conjugal transfer pro 97.5 0.00038 8.3E-09 63.6 8.2 77 254-330 73-166 (181)
125 cd02967 mauD Methylamine utili 97.5 7E-05 1.5E-09 60.6 2.4 66 243-311 13-82 (114)
126 PRK15317 alkyl hydroperoxide r 97.5 0.00039 8.5E-09 71.8 8.4 88 239-334 104-197 (517)
127 KOG0908 Thioredoxin-like prote 97.4 0.00022 4.8E-09 68.2 5.7 60 254-321 25-93 (288)
128 KOG0913 Thiol-disulfide isomer 97.4 3.7E-05 7.9E-10 72.7 0.5 73 254-334 43-125 (248)
129 cd02960 AGR Anterior Gradient 97.4 0.0004 8.7E-09 60.3 6.7 68 239-313 12-85 (130)
130 KOG1752 Glutaredoxin and relat 97.4 0.00062 1.3E-08 57.0 7.6 82 245-328 7-88 (104)
131 PRK10824 glutaredoxin-4; Provi 97.3 0.00062 1.3E-08 57.9 6.6 80 244-328 7-91 (115)
132 PRK12759 bifunctional gluaredo 97.3 0.0004 8.7E-09 70.3 6.5 71 253-326 3-79 (410)
133 cd02972 DsbA_family DsbA famil 97.2 0.00083 1.8E-08 51.3 6.0 68 254-321 1-97 (98)
134 PTZ00062 glutaredoxin; Provisi 97.2 0.00084 1.8E-08 62.3 7.0 84 241-329 102-190 (204)
135 TIGR02661 MauD methylamine deh 97.2 0.0016 3.6E-08 58.7 8.4 80 252-331 76-175 (189)
136 PF13905 Thioredoxin_8: Thiore 97.1 0.0008 1.7E-08 52.9 4.9 64 253-316 4-94 (95)
137 PLN02919 haloacid dehalogenase 97.1 0.0016 3.5E-08 73.2 8.7 82 250-331 420-532 (1057)
138 TIGR03140 AhpF alkyl hydropero 97.0 0.0019 4E-08 66.8 7.9 86 240-333 106-197 (515)
139 PRK10877 protein disulfide iso 97.0 0.0018 3.9E-08 60.8 6.6 37 296-332 191-228 (232)
140 COG0526 TrxA Thiol-disulfide i 96.8 0.0026 5.7E-08 48.3 5.6 74 254-332 36-121 (127)
141 PF13728 TraF: F plasmid trans 96.7 0.0072 1.5E-07 56.3 8.6 88 243-330 113-213 (215)
142 cd03008 TryX_like_RdCVF Trypar 96.6 0.0015 3.3E-08 57.5 3.2 30 245-274 20-49 (146)
143 PF08534 Redoxin: Redoxin; In 96.6 0.0042 9.1E-08 52.6 5.7 84 240-323 18-136 (146)
144 cd03012 TlpA_like_DipZ_like Tl 96.6 0.0051 1.1E-07 51.3 5.9 32 243-274 16-47 (126)
145 cd03031 GRX_GRX_like Glutaredo 96.3 0.0065 1.4E-07 53.7 5.1 71 254-329 2-82 (147)
146 cd00340 GSH_Peroxidase Glutath 95.9 0.017 3.6E-07 50.0 5.7 33 242-275 14-46 (152)
147 PRK11509 hydrogenase-1 operon 95.8 0.021 4.6E-07 49.8 5.7 45 280-332 72-121 (132)
148 PTZ00056 glutathione peroxidas 95.4 0.039 8.5E-07 50.5 6.3 33 242-274 31-63 (199)
149 KOG2501 Thioredoxin, nucleored 95.3 0.015 3.3E-07 52.1 3.2 69 248-316 30-127 (157)
150 PF13462 Thioredoxin_4: Thiore 95.2 0.023 5E-07 48.4 3.8 35 297-331 126-160 (162)
151 PLN02399 phospholipid hydroper 94.9 0.081 1.8E-06 50.2 7.0 34 241-274 90-123 (236)
152 cd03060 GST_N_Omega_like GST_N 94.9 0.09 1.9E-06 39.5 6.0 57 255-317 2-59 (71)
153 COG2143 Thioredoxin-related pr 94.9 0.048 1E-06 49.3 5.1 80 254-333 46-147 (182)
154 cd02991 UAS_ETEA UAS family, E 94.8 0.13 2.9E-06 43.4 7.5 86 240-332 7-110 (116)
155 cd02969 PRX_like1 Peroxiredoxi 94.8 0.077 1.7E-06 46.5 6.2 78 243-320 17-126 (171)
156 TIGR01626 ytfJ_HI0045 conserve 94.6 0.094 2E-06 48.1 6.4 87 245-331 54-176 (184)
157 TIGR02540 gpx7 putative glutat 94.6 0.1 2.2E-06 45.0 6.3 31 242-272 14-44 (153)
158 PRK11657 dsbG disulfide isomer 94.5 0.031 6.8E-07 53.1 3.3 38 296-333 208-250 (251)
159 cd00570 GST_N_family Glutathio 94.3 0.2 4.2E-06 35.4 6.5 60 255-319 2-61 (71)
160 PF00578 AhpC-TSA: AhpC/TSA fa 94.3 0.1 2.2E-06 42.3 5.5 33 242-274 17-50 (124)
161 PF03190 Thioredox_DsbH: Prote 94.3 0.072 1.6E-06 48.1 4.9 72 239-316 26-114 (163)
162 TIGR02739 TraF type-F conjugat 94.2 0.23 5E-06 47.8 8.5 86 244-329 144-242 (256)
163 PRK13703 conjugal pilus assemb 94.1 0.3 6.5E-06 46.9 9.0 80 250-329 143-235 (248)
164 cd03022 DsbA_HCCA_Iso DsbA fam 94.1 0.068 1.5E-06 47.0 4.3 36 297-332 157-192 (192)
165 cd03017 PRX_BCP Peroxiredoxin 94.1 0.14 3E-06 42.7 5.9 88 243-330 16-138 (140)
166 PF06110 DUF953: Eukaryotic pr 93.8 0.046 1E-06 46.8 2.5 62 258-321 34-105 (119)
167 PF14595 Thioredoxin_9: Thiore 93.4 0.075 1.6E-06 45.8 3.3 81 238-323 29-118 (129)
168 cd03045 GST_N_Delta_Epsilon GS 93.0 0.4 8.8E-06 35.7 6.4 61 254-317 1-61 (74)
169 PF01323 DSBA: DSBA-like thior 92.8 0.13 2.9E-06 45.0 4.1 35 297-331 157-192 (193)
170 cd03035 ArsC_Yffb Arsenate Red 92.7 0.13 2.9E-06 42.6 3.7 49 254-304 1-49 (105)
171 PLN02412 probable glutathione 92.7 0.35 7.6E-06 42.8 6.6 33 242-274 21-53 (167)
172 cd03036 ArsC_like Arsenate Red 92.7 0.15 3.3E-06 42.4 4.0 50 254-305 1-50 (111)
173 cd03051 GST_N_GTT2_like GST_N 92.6 0.34 7.3E-06 35.6 5.4 61 254-317 1-62 (74)
174 cd03037 GST_N_GRX2 GST_N famil 92.5 0.41 8.9E-06 35.7 5.8 59 255-320 2-61 (71)
175 TIGR01617 arsC_related transcr 92.4 0.25 5.5E-06 41.2 5.0 64 254-320 1-65 (117)
176 cd02970 PRX_like2 Peroxiredoxi 92.4 0.23 5E-06 41.5 4.8 64 243-310 15-84 (149)
177 cd02977 ArsC_family Arsenate R 92.0 0.19 4.1E-06 41.0 3.7 49 254-304 1-49 (105)
178 cd03014 PRX_Atyp2cys Peroxired 91.6 0.18 3.9E-06 42.5 3.2 34 242-275 18-52 (143)
179 cd03015 PRX_Typ2cys Peroxiredo 90.9 0.93 2E-05 39.9 7.2 34 241-274 20-54 (173)
180 PTZ00256 glutathione peroxidas 90.6 0.53 1.1E-05 42.2 5.5 34 241-274 31-65 (183)
181 cd03059 GST_N_SspA GST_N famil 90.6 1.2 2.7E-05 32.8 6.7 58 254-317 1-58 (73)
182 KOG0914 Thioredoxin-like prote 90.4 1.3 2.8E-05 42.2 8.0 65 244-316 138-216 (265)
183 PF13417 GST_N_3: Glutathione 90.2 1.2 2.7E-05 33.7 6.5 59 256-320 1-59 (75)
184 cd03040 GST_N_mPGES2 GST_N fam 90.1 1 2.2E-05 33.9 6.0 53 254-314 2-54 (77)
185 PRK00522 tpx lipid hydroperoxi 89.8 0.29 6.3E-06 43.2 3.0 34 242-275 36-70 (167)
186 cd03024 DsbA_FrnE DsbA family, 89.7 0.48 1E-05 42.0 4.4 35 297-331 165-200 (201)
187 PF05768 DUF836: Glutaredoxin- 89.3 2.6 5.7E-05 32.9 7.8 69 254-331 2-80 (81)
188 PRK10382 alkyl hydroperoxide r 88.5 1.1 2.5E-05 40.8 6.0 91 241-331 22-152 (187)
189 PRK01655 spxA transcriptional 88.3 0.59 1.3E-05 40.2 3.8 48 254-303 2-49 (131)
190 PRK13190 putative peroxiredoxi 88.3 1.4 3E-05 40.3 6.5 90 242-331 19-150 (202)
191 cd03018 PRX_AhpE_like Peroxire 88.2 0.56 1.2E-05 39.5 3.6 34 241-274 18-53 (149)
192 KOG3425 Uncharacterized conser 88.0 0.53 1.2E-05 40.8 3.3 62 260-322 43-113 (128)
193 COG1651 DsbG Protein-disulfide 87.2 0.82 1.8E-05 42.2 4.3 37 296-332 204-240 (244)
194 cd03019 DsbA_DsbA DsbA family, 87.0 0.73 1.6E-05 39.8 3.7 29 297-325 133-161 (178)
195 cd03032 ArsC_Spx Arsenate Redu 86.3 0.95 2.1E-05 37.7 3.9 34 254-288 2-35 (115)
196 PRK12559 transcriptional regul 86.3 1.1 2.3E-05 38.7 4.3 35 254-289 2-36 (131)
197 cd03041 GST_N_2GST_N GST_N fam 86.2 2.1 4.6E-05 32.6 5.5 54 254-314 2-57 (77)
198 cd03056 GST_N_4 GST_N family, 85.5 3.8 8.2E-05 30.0 6.5 60 255-318 2-62 (73)
199 cd03055 GST_N_Omega GST_N fami 85.4 3.3 7.1E-05 32.6 6.4 58 254-317 19-77 (89)
200 cd03016 PRX_1cys Peroxiredoxin 84.7 3.4 7.4E-05 37.7 7.1 32 243-274 17-50 (203)
201 COG4545 Glutaredoxin-related p 83.7 1.5 3.3E-05 35.2 3.7 65 255-320 5-78 (85)
202 PRK09437 bcp thioredoxin-depen 81.5 1.8 3.9E-05 37.0 3.7 32 242-273 22-54 (154)
203 PTZ00253 tryparedoxin peroxida 81.1 3.2 7E-05 37.6 5.4 91 241-331 27-160 (199)
204 PRK10954 periplasmic protein d 80.9 1.6 3.4E-05 39.9 3.3 37 297-333 157-202 (207)
205 PRK10606 btuE putative glutath 80.0 1.9 4E-05 39.4 3.4 73 242-316 17-102 (183)
206 PRK13344 spxA transcriptional 79.4 3 6.5E-05 36.0 4.4 49 254-304 2-50 (132)
207 cd03033 ArsC_15kD Arsenate Red 79.0 2.7 5.8E-05 35.4 3.8 51 253-305 1-51 (113)
208 PRK01749 disulfide bond format 76.1 19 0.00041 32.6 8.7 49 131-183 12-60 (176)
209 PRK02110 disulfide bond format 74.6 20 0.00042 32.3 8.4 47 131-181 12-58 (169)
210 cd02971 PRX_family Peroxiredox 74.6 4.5 9.7E-05 33.4 4.0 31 244-274 16-47 (140)
211 PRK15000 peroxidase; Provision 73.6 6.8 0.00015 35.9 5.3 90 242-331 25-158 (200)
212 cd03019 DsbA_DsbA DsbA family, 72.0 3.3 7.1E-05 35.7 2.7 24 252-275 17-40 (178)
213 cd02968 SCO SCO (an acronym fo 71.9 2.5 5.5E-05 35.1 1.9 32 243-274 15-47 (142)
214 TIGR01598 holin_phiLC3 holin, 71.5 18 0.00038 29.1 6.5 36 178-214 26-61 (78)
215 TIGR03137 AhpC peroxiredoxin. 71.4 2.4 5.3E-05 38.1 1.8 33 242-274 23-56 (187)
216 PF13462 Thioredoxin_4: Thiore 70.5 4.2 9.2E-05 34.3 3.0 21 254-274 16-36 (162)
217 PRK13189 peroxiredoxin; Provis 69.4 13 0.00028 34.7 6.2 89 243-331 27-159 (222)
218 KOG0911 Glutaredoxin-related p 69.3 3.8 8.1E-05 39.0 2.6 66 254-325 21-93 (227)
219 COG2761 FrnE Predicted dithiol 68.4 6.2 0.00013 37.5 3.8 33 298-330 175-208 (225)
220 PRK04388 disulfide bond format 67.0 36 0.00078 30.6 8.3 51 131-185 9-59 (172)
221 COG3019 Predicted metal-bindin 65.1 12 0.00026 33.5 4.6 77 254-335 28-104 (149)
222 PRK04307 putative disulfide ox 63.5 41 0.0009 31.9 8.3 51 131-185 23-74 (218)
223 PF07098 DUF1360: Protein of u 60.7 22 0.00047 30.0 5.3 20 163-182 59-78 (105)
224 PRK10954 periplasmic protein d 60.6 4.2 9.1E-05 37.1 1.1 22 251-272 38-59 (207)
225 cd03021 DsbA_GSTK DsbA family, 60.2 12 0.00026 34.0 4.0 35 298-332 170-209 (209)
226 cd03058 GST_N_Tau GST_N family 58.6 39 0.00085 25.0 6.0 58 254-318 1-60 (74)
227 PF14673 DUF4459: Domain of un 58.1 3.8 8.2E-05 35.3 0.4 17 254-275 93-109 (159)
228 PF13743 Thioredoxin_5: Thiore 57.5 7.1 0.00015 35.0 2.0 32 297-328 137-175 (176)
229 COG3389 Uncharacterized protei 57.0 41 0.0009 32.5 7.1 133 99-257 29-175 (277)
230 PF13848 Thioredoxin_6: Thiore 52.7 83 0.0018 26.9 7.9 69 255-331 100-182 (184)
231 COG3531 Predicted protein-disu 51.3 10 0.00022 35.7 2.0 22 297-318 164-187 (212)
232 TIGR00014 arsC arsenate reduct 50.4 27 0.00058 29.1 4.3 50 254-305 1-50 (114)
233 PF07912 ERp29_N: ERp29, N-ter 49.5 63 0.0014 28.3 6.4 50 280-332 57-116 (126)
234 PRK03113 putative disulfide ox 47.5 1.5E+02 0.0032 26.1 8.6 44 136-183 13-56 (139)
235 PF05297 Herpes_LMP1: Herpesvi 47.0 6.4 0.00014 39.1 0.0 8 98-105 50-57 (381)
236 KOG3814 Signaling protein van 46.2 81 0.0018 32.8 7.6 78 90-175 148-231 (531)
237 cd03054 GST_N_Metaxin GST_N fa 45.8 64 0.0014 23.7 5.4 49 260-321 14-62 (72)
238 PF05279 Asp-B-Hydro_N: Aspart 45.7 23 0.00049 34.1 3.5 30 56-85 6-35 (243)
239 COG1495 DsbB Disulfide bond fo 45.2 1.5E+02 0.0032 26.8 8.5 35 143-181 25-59 (170)
240 PF13848 Thioredoxin_6: Thiore 44.4 54 0.0012 28.0 5.4 54 269-332 9-72 (184)
241 cd03053 GST_N_Phi GST_N family 43.2 1.2E+02 0.0026 22.3 6.5 60 254-317 2-62 (76)
242 PF04531 Phage_holin_1: Bacter 43.2 80 0.0017 25.3 5.8 19 197-215 47-65 (84)
243 PF01216 Calsequestrin: Calseq 42.8 59 0.0013 33.2 6.0 70 254-331 55-140 (383)
244 PRK10853 putative reductase; P 40.0 40 0.00086 28.5 3.8 51 254-306 2-52 (118)
245 KOG3029 Glutathione S-transfer 39.4 93 0.002 31.1 6.6 80 241-330 76-174 (370)
246 COG3529 Predicted nucleic-acid 39.0 17 0.00036 28.1 1.1 27 261-290 12-40 (66)
247 PRK01103 formamidopyrimidine/5 38.6 6 0.00013 38.1 -1.6 11 258-268 264-274 (274)
248 cd03052 GST_N_GDAP1 GST_N fami 38.1 1.2E+02 0.0027 22.7 6.0 60 254-317 1-61 (73)
249 COG3634 AhpF Alkyl hydroperoxi 38.1 79 0.0017 32.8 6.1 83 244-332 106-195 (520)
250 PF06638 Strabismus: Strabismu 37.2 3.1E+02 0.0068 29.2 10.5 61 89-156 123-188 (505)
251 cd03034 ArsC_ArsC Arsenate Red 36.4 58 0.0012 27.0 4.2 49 254-304 1-49 (112)
252 PF02114 Phosducin: Phosducin; 36.4 58 0.0013 31.5 4.7 74 254-334 150-237 (265)
253 COG0266 Nei Formamidopyrimidin 36.0 7.6 0.00016 38.0 -1.4 10 258-267 264-273 (273)
254 smart00756 VKc Family of likel 36.0 61 0.0013 28.1 4.4 34 131-165 2-40 (142)
255 KOG2640 Thioredoxin [Function 35.4 14 0.00029 36.9 0.3 81 246-331 70-158 (319)
256 PRK09481 sspA stringent starva 34.7 1.3E+02 0.0029 26.9 6.6 58 254-317 11-68 (211)
257 PTZ00137 2-Cys peroxiredoxin; 34.4 39 0.00084 32.7 3.2 91 241-331 88-221 (261)
258 PRK13599 putative peroxiredoxi 33.8 29 0.00064 32.2 2.2 20 255-274 34-53 (215)
259 cd02983 P5_C P5 family, C-term 33.3 1.2E+02 0.0026 25.9 5.7 36 297-332 69-112 (130)
260 PRK14811 formamidopyrimidine-D 32.6 6.5 0.00014 37.9 -2.4 14 258-271 254-267 (269)
261 cd03049 GST_N_3 GST_N family, 32.4 1.9E+02 0.0041 21.1 6.1 58 254-317 1-61 (73)
262 cd02981 PDI_b_family Protein D 31.4 2.4E+02 0.0052 21.6 7.4 70 250-332 17-95 (97)
263 TIGR03143 AhpF_homolog putativ 30.7 2E+02 0.0044 30.3 8.0 63 253-323 369-442 (555)
264 PRK00611 putative disulfide ox 30.0 1.8E+02 0.004 25.5 6.4 42 136-181 12-53 (135)
265 PF06953 ArsD: Arsenical resis 28.3 79 0.0017 27.3 3.8 44 296-339 61-106 (123)
266 PF02600 DsbB: Disulfide bond 28.1 64 0.0014 28.0 3.3 38 131-172 5-42 (156)
267 cd03030 GRX_SH3BGR Glutaredoxi 27.9 1.2E+02 0.0027 24.5 4.7 61 263-328 17-81 (92)
268 PF10177 DUF2371: Uncharacteri 27.7 65 0.0014 28.6 3.2 15 244-258 95-109 (141)
269 TIGR01616 nitro_assoc nitrogen 27.4 82 0.0018 27.0 3.7 22 254-275 3-24 (126)
270 cd03025 DsbA_FrnE_like DsbA fa 27.3 42 0.00092 29.2 2.0 17 297-313 159-175 (193)
271 PF07343 DUF1475: Protein of u 26.9 6E+02 0.013 24.7 9.7 83 63-156 8-99 (254)
272 PF11023 DUF2614: Protein of u 26.3 72 0.0015 27.5 3.1 14 262-275 72-85 (114)
273 cd03042 GST_N_Zeta GST_N famil 26.3 2.5E+02 0.0054 20.1 6.3 60 255-318 2-62 (73)
274 cd03067 PDI_b_PDIR_N PDIb fami 26.0 93 0.002 26.6 3.6 62 264-331 32-108 (112)
275 PRK13191 putative peroxiredoxi 25.8 48 0.001 30.7 2.2 32 243-274 25-58 (215)
276 PRK06265 cobalt transport prot 25.7 1.1E+02 0.0025 28.0 4.6 28 166-193 12-39 (199)
277 cd03013 PRX5_like Peroxiredoxi 25.2 54 0.0012 28.6 2.2 63 242-309 20-93 (155)
278 cd03038 GST_N_etherase_LigE GS 24.8 1.1E+02 0.0025 23.1 3.8 55 260-318 14-69 (84)
279 COG3917 NahD 2-hydroxychromene 24.8 90 0.0019 29.2 3.6 34 297-330 166-199 (203)
280 PRK13945 formamidopyrimidine-D 24.6 15 0.00033 35.5 -1.4 10 258-267 273-282 (282)
281 PF09526 DUF2387: Probable met 24.5 8.8 0.00019 30.1 -2.5 27 261-290 10-38 (71)
282 PF09726 Macoilin: Transmembra 24.1 2E+02 0.0044 31.8 6.8 44 144-189 72-115 (697)
283 PF03419 Peptidase_U4: Sporula 23.3 4.8E+02 0.01 25.1 8.6 32 172-203 66-97 (293)
284 PRK10026 arsenate reductase; P 23.1 1.4E+02 0.003 26.3 4.4 51 253-305 3-53 (141)
285 COG1393 ArsC Arsenate reductas 22.9 1.5E+02 0.0032 25.2 4.4 49 254-304 3-51 (117)
286 PRK14810 formamidopyrimidine-D 22.7 19 0.00041 34.8 -1.2 11 257-267 262-272 (272)
287 PF07449 HyaE: Hydrogenase-1 e 22.6 1.1E+02 0.0024 25.8 3.5 31 296-326 71-106 (107)
288 cd03073 PDI_b'_ERp72_ERp57 PDI 22.6 1.7E+02 0.0038 24.2 4.7 59 267-331 35-107 (111)
289 TIGR02182 GRXB Glutaredoxin, G 22.5 2.1E+02 0.0046 25.8 5.7 56 255-317 1-57 (209)
290 PF05656 DUF805: Protein of un 21.1 4.5E+02 0.0098 21.3 7.3 13 180-192 63-75 (120)
291 cd03039 GST_N_Sigma_like GST_N 20.7 2.5E+02 0.0054 20.4 4.8 59 255-318 2-60 (72)
292 PF04134 DUF393: Protein of un 20.2 2.2E+02 0.0047 22.9 4.8 71 257-333 2-79 (114)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.90 E-value=2.2e-23 Score=181.30 Aligned_cols=117 Identities=35% Similarity=0.546 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCCC-CccccccccchhHHHH---HHHHHHHh------------h
Q 019491 62 PYGWCAGIGGVGFLETTYLSYLKLTNS-----DAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL------------A 120 (340)
Q Consensus 62 ~~~~i~~La~iGll~T~YLT~~kl~~~-----~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll------------~ 120 (340)
...++.+++++|+++|+||+++|++.. ++.||+| .+||++|++||||++| ++.+|+.. .
T Consensus 4 ~~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~ 83 (142)
T smart00756 4 TRWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLL 83 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHc
Confidence 345678999999999999999998643 3899998 5799999999999999 44444321 1
Q ss_pred cccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhc
Q 019491 121 RKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 184 (340)
Q Consensus 121 ~~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g 184 (340)
..+.+ +|.|+.+++++++|.+||.||+|++.|+| |++|+||+++|++++++|++++.+
T Consensus 84 ~~~~~-----~~~~~~l~~~~~~~~~~s~yl~y~~~~vi-~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 84 GVTLP-----RWTWRLLFLGSLAGAVFSVYLIYLLVFVI-KALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred cccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHhc
Confidence 22333 88999999999999999999999999998 999999999999999999998865
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=164.11 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCC-CccccccccchhHHHH---HHHHHHHh------hcccCCCcccc
Q 019491 63 YGWCAGIGGVGFLETTYLSYLKL--TNSDAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL------ARKSFPIGINE 130 (340)
Q Consensus 63 ~~~i~~La~iGll~T~YLT~~kl--~~~~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll------~~~~~~~~~~~ 130 (340)
..++++++++|+++|.|++++|. +++++.||+| .+||++|++||||++| ...+|+.. .......+ ..
T Consensus 9 ~~ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~~ 87 (143)
T PRK14889 9 LYLLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-LK 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-hh
Confidence 34567999999999999999883 4678999998 4799999999999998 34444321 00000000 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhcc
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 185 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~ 185 (340)
+|.+......+.++.+|+.||+|++.|+| |++|+||+++|++.+++|++.+...
T Consensus 88 ~~~~~~~~~~~~~g~~~~~yL~y~~~fvi-~a~C~~C~~~~~~~~~~~~~~~~~~ 141 (143)
T PRK14889 88 RILGRVISLWSIIGLAIVPYLVYLEVFVL-GAICIYCTIAHVSILAAFILILIKL 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667788999999999999998 9999999999999999999887654
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.81 E-value=4.5e-20 Score=158.61 Aligned_cols=119 Identities=34% Similarity=0.537 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCC-CccccccccchhHHHH---HHHHHHHh-------hc-ccCCCc
Q 019491 64 GWCAGIGGVGFLETTYLSYLKLTNS----DAFCPIG-GASCGDVLNSDYAVVF---VAVLGLLL-------AR-KSFPIG 127 (340)
Q Consensus 64 ~~i~~La~iGll~T~YLT~~kl~~~----~~~C~i~-~~sC~~VL~S~ya~vf---vaalg~ll-------~~-~~~~~~ 127 (340)
.++.+++++|+++|.||++++++.. ++.||++ ..||++|++||||++| .+.+|... .. ...+.+
T Consensus 3 ~~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~ 82 (137)
T PF07884_consen 3 ILLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccc
Confidence 4677999999999999999999755 4999988 7899999999999998 55555321 11 111112
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhc
Q 019491 128 INESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 184 (340)
Q Consensus 128 ~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g 184 (340)
. +++.|..+++.++.+.+++.||+|++.+++ |++|+||+++|++++.++++++.|
T Consensus 83 ~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~i-~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 83 L-SRWLWLLLFALSFIGLVFSLYLIYIQIFVI-KAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp --STTHHHHHHHHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHS-
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence 2 278899999999999999999999999998 999999999999999999998865
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.78 E-value=1.4e-18 Score=153.14 Aligned_cols=120 Identities=25% Similarity=0.315 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHhcCCC--CCCCCC-CccccccccchhHHHH---HHHHHH-----------Hhhc
Q 019491 62 PYGWCAGIGGVGFLETTYLS---YLKLTNSD--AFCPIG-GASCGDVLNSDYAVVF---VAVLGL-----------LLAR 121 (340)
Q Consensus 62 ~~~~i~~La~iGll~T~YLT---~~kl~~~~--~~C~i~-~~sC~~VL~S~ya~vf---vaalg~-----------ll~~ 121 (340)
+..+...++.+|.+.+.-++ +.++.++. ..|+.+ .++|++|++||||++| ...+|. +...
T Consensus 11 ~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all~~~ 90 (156)
T COG4243 11 LGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALLGVA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555554444 44555654 445555 5799999999999998 222221 1111
Q ss_pred ccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhccch
Q 019491 122 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 187 (340)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~~~ 187 (340)
..++ +|+|+.++++++.|++|+.||+|+++|++ |++|+||+++|+.++++|++...+++|
T Consensus 91 ~~l~-----~~~~~~l~v~~~~g~~f~~yLiY~e~~~~-~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 91 GVLE-----RWTWIGLLVGSLVGSAFVPYLIYLELFVI-GALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223 99999999999999999999999999998 999999999999999999999999987
No 5
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.50 E-value=5.4e-14 Score=113.07 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=59.5
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
-+++|+|+||+||+++++.|.+.|.+ .+..|||+.+ .++|++++|++|||+.+ +|+ +|.|.+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~ 92 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDR 92 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCCC
Confidence 36789999999999999999876532 2568999854 48899999999999887 775 699999
Q ss_pred CHHHHHHHh
Q 019491 323 DLSDLAKAS 331 (340)
Q Consensus 323 ~l~~La~~s 331 (340)
+.++|.+|+
T Consensus 93 ~~~~l~~f~ 101 (101)
T cd03003 93 SKESLVKFA 101 (101)
T ss_pred CHHHHHhhC
Confidence 999999874
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.47 E-value=1e-13 Score=116.49 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=60.4
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhh-hhCCCcccceeEE--CCE---Ee
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VL 318 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC-~~~~I~GyPTw~i--nG~---~y 318 (340)
++.-+++|+||||+||+.+++.|.+.|.+ .+..|||+.+ .++| ++++|++|||+++ ||+ +|
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y 100 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEY 100 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEE
Confidence 34447799999999999999999986532 2468999855 3789 5899999999887 775 79
Q ss_pred eCCCCHHHHHHHh
Q 019491 319 SGEQDLSDLAKAS 331 (340)
Q Consensus 319 ~G~r~l~~La~~s 331 (340)
.|.++.++|..|.
T Consensus 101 ~G~~~~~~i~~~~ 113 (113)
T cd03006 101 KGPMRAPYMEKFV 113 (113)
T ss_pred eCCCCHHHHHhhC
Confidence 9999999998863
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.45 E-value=2.6e-13 Score=110.49 Aligned_cols=70 Identities=23% Similarity=0.408 Sum_probs=58.0
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc-----------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK-----------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---- 316 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~-----------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---- 316 (340)
+++|+|+||+||+++++.|.+.|.+ .+.+|||+.+ .++|+++||++|||.++ ||+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Ptl~~~~~g~~~~~ 93 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPTLKLFRNGMMMKR 93 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCEEEEEeCCcCcce
Confidence 6689999999999999999765421 2457999864 48999999999999887 665
Q ss_pred EeeCCCCHHHHHHHh
Q 019491 317 VLSGEQDLSDLAKAS 331 (340)
Q Consensus 317 ~y~G~r~l~~La~~s 331 (340)
+|.|.|+.++|.+|.
T Consensus 94 ~~~g~~~~~~l~~fi 108 (108)
T cd02996 94 EYRGQRSVEALAEFV 108 (108)
T ss_pred ecCCCCCHHHHHhhC
Confidence 689999999999874
No 8
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=141.29 Aligned_cols=76 Identities=24% Similarity=0.434 Sum_probs=64.2
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--- 316 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--- 316 (340)
++.-.++||||||+||+++.|.|.+.|.. .+..|||+.+ .++|.+++|+||||++| ||+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~ 113 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQ 113 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcce
Confidence 34446789999999999999999986531 2679999976 38999999999999998 776
Q ss_pred EeeCCCCHHHHHHHhCC
Q 019491 317 VLSGEQDLSDLAKASGF 333 (340)
Q Consensus 317 ~y~G~r~l~~La~~sg~ 333 (340)
.|.|.|+.|.+..|+--
T Consensus 114 ~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 114 DYNGPREADGIVKWLKK 130 (493)
T ss_pred eccCcccHHHHHHHHHh
Confidence 69999999999998754
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.41 E-value=6.6e-13 Score=106.88 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=59.0
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---EeeC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSG 320 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y~G 320 (340)
.-+++|+|+||+||+++++.|.+.+.+ .+..|||+.+ .++|++++|++|||+.+ +| + +|.|
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEccC
Confidence 347789999999999999999876532 2468999854 48999999999999887 55 4 7999
Q ss_pred CCC-HHHHHHHh
Q 019491 321 EQD-LSDLAKAS 331 (340)
Q Consensus 321 ~r~-l~~La~~s 331 (340)
.++ .++|.+|.
T Consensus 93 ~~~~~~~l~~~i 104 (104)
T cd03004 93 WHRDADSILEFI 104 (104)
T ss_pred CCCCHHHHHhhC
Confidence 987 99998873
No 10
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.40 E-value=1.1e-12 Score=105.16 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred HhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491 247 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 316 (340)
Q Consensus 247 ~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-- 316 (340)
+.++..-+++|+|+|||||+++++.|.+.+. + .+..|||+.+ .++|++++|++|||..+ +|+
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~ 84 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGVFR 84 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCCEE
Confidence 3445556889999999999999999987542 1 2458999754 47899999999999887 776
Q ss_pred EeeCCCCHHHHHHHh
Q 019491 317 VLSGEQDLSDLAKAS 331 (340)
Q Consensus 317 ~y~G~r~l~~La~~s 331 (340)
+|.|.++.++|.++.
T Consensus 85 ~~~G~~~~~~l~~~i 99 (101)
T cd02994 85 RYQGPRDKEDLISFI 99 (101)
T ss_pred EecCCCCHHHHHHHH
Confidence 699999999999875
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.35 E-value=3.9e-12 Score=100.37 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=60.6
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh--c-c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K-Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 320 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~-~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G 320 (340)
+.-+++|+++||+||+++++.|.+.+. . . +..|||+.+ .++|++++|+++||+.+ ||+ +|.|
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g 89 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--------KELCKKYGVKSVPTIIFFKNGKEVKRYNG 89 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--------HHHHHHTTCSSSSEEEEEETTEEEEEEES
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--------chhhhccCCCCCCEEEEEECCcEEEEEEC
Confidence 455789999999999999999987542 2 2 347888743 58999999999999887 776 7999
Q ss_pred CCCHHHHHHHh
Q 019491 321 EQDLSDLAKAS 331 (340)
Q Consensus 321 ~r~l~~La~~s 331 (340)
.++.++|.++.
T Consensus 90 ~~~~~~l~~~i 100 (103)
T PF00085_consen 90 PRNAESLIEFI 100 (103)
T ss_dssp SSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999875
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.35 E-value=2.2e-12 Score=104.13 Aligned_cols=73 Identities=25% Similarity=0.469 Sum_probs=59.0
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--------E
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--------V 317 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--------~ 317 (340)
-+++|+|+||+||+++++.|.+.+.+ .+..|||+.+. ..++|++++|++|||..+ +|+ +
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~ 94 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVED 94 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCccccccccc
Confidence 47789999999999999999875422 24568998642 258999999999999887 442 6
Q ss_pred eeCCCCHHHHHHHh
Q 019491 318 LSGEQDLSDLAKAS 331 (340)
Q Consensus 318 y~G~r~l~~La~~s 331 (340)
|.|.++.++|.+|.
T Consensus 95 ~~G~~~~~~l~~fi 108 (109)
T cd03002 95 YNGERSAKAIVDFV 108 (109)
T ss_pred ccCccCHHHHHHHh
Confidence 99999999999885
No 13
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.33 E-value=2.8e-12 Score=108.81 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=62.8
Q ss_pred CeEEEcc--CCCH---HHHHHHHHHhHHhh-ccCceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE--CCE-----E
Q 019491 253 GAKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ-----V 317 (340)
Q Consensus 253 g~~~YgA--~WCp---HC~~qk~lfgk~A~-~~l~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i--nG~-----~ 317 (340)
-+++|+| |||+ ||+++.+.|.+.+. ..|+.|||+..+.. ...++|+++||+ ||||+++ ||+ .
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~---~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~ 97 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEK---LNMELGERYKLDKESYPVIYLFHGGDFENPVP 97 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccch---hhHHHHHHhCCCcCCCCEEEEEeCCCcCCCcc
Confidence 4678889 9999 99999999987542 34789999753321 136899999999 9999887 673 6
Q ss_pred eeCC-CCHHHHHHHhCC
Q 019491 318 LSGE-QDLSDLAKASGF 333 (340)
Q Consensus 318 y~G~-r~l~~La~~sg~ 333 (340)
|+|. |+.++|.+|+.-
T Consensus 98 Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 98 YSGADVTVDALQRFLKG 114 (116)
T ss_pred CCCCcccHHHHHHHHHh
Confidence 9997 999999998754
No 14
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.33 E-value=3.7e-12 Score=103.83 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=56.2
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCCCCH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQDL 324 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~r~l 324 (340)
-++.|+|+||+||+++++.|.+.+. ..+. .||++.+ ..+++++++|++|||..+ +|+ +|.|.++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-------~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~ 93 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-------KPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTL 93 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-------CHHHHHhcCCeecCEEEEEcCCceeEecCCCCH
Confidence 3678999999999999999987542 2343 4554411 258999999999999887 554 79999999
Q ss_pred HHHHHHh
Q 019491 325 SDLAKAS 331 (340)
Q Consensus 325 ~~La~~s 331 (340)
++|.+|.
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9998873
No 15
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.32 E-value=4.1e-12 Score=100.97 Aligned_cols=71 Identities=25% Similarity=0.575 Sum_probs=57.7
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 319 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~ 319 (340)
-+++|+|+||+||+++++.|.+.+. + .+..|||+.+ .++|++++|+++||+.+ +|+ +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 90 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYK 90 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEee
Confidence 4678999999999999999876432 1 2457899864 37899999999999887 665 699
Q ss_pred CCCCHHHHHHHh
Q 019491 320 GEQDLSDLAKAS 331 (340)
Q Consensus 320 G~r~l~~La~~s 331 (340)
|.++.++|.++.
T Consensus 91 G~~~~~~l~~~i 102 (102)
T cd03005 91 GTRDLDSLKEFV 102 (102)
T ss_pred CCCCHHHHHhhC
Confidence 999999998863
No 16
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.30 E-value=1.1e-11 Score=98.24 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=58.7
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
-++.|+|+||+||+++++.|.+.+.+ . +..|||+.+ .++|++++|+++||.++ +|+ ++.|.+
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 86 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQGAQ 86 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeecCCC
Confidence 37789999999999999999775421 2 357888754 48999999999999887 776 699999
Q ss_pred CHHHHHHHh
Q 019491 323 DLSDLAKAS 331 (340)
Q Consensus 323 ~l~~La~~s 331 (340)
+.++|.++.
T Consensus 87 ~~~~l~~~l 95 (96)
T cd02956 87 PEEQLRQML 95 (96)
T ss_pred CHHHHHHHh
Confidence 999999875
No 17
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.29 E-value=9.3e-12 Score=102.15 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=57.1
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh--c--c--CceeECCCCCCCCChhhHhhhhh-CCCcccceeEE--CC----EE
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QV 317 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~--l~yVeC~~~g~~~~~k~~~lC~~-~~I~GyPTw~i--nG----~~ 317 (340)
+.-+++|+|+|||||+++++.|.+.+. + . +..|||+.+. .++|++ ++|++|||..+ +| ..
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-------~~~~~~~~~v~~~Pti~~f~~~~~~~~~ 94 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-------REFAKEELQLKSFPTILFFPKNSRQPIK 94 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-------hhhHHhhcCCCcCCEEEEEcCCCCCcee
Confidence 455789999999999999999987542 1 1 4578998631 367875 89999999886 33 26
Q ss_pred eeCC-CCHHHHHHHh
Q 019491 318 LSGE-QDLSDLAKAS 331 (340)
Q Consensus 318 y~G~-r~l~~La~~s 331 (340)
|.|. |+.++|.+|.
T Consensus 95 y~g~~~~~~~l~~f~ 109 (109)
T cd02993 95 YPSEQRDVDSLLMFV 109 (109)
T ss_pred ccCCCCCHHHHHhhC
Confidence 9995 9999998874
No 18
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.28 E-value=1.2e-11 Score=98.47 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=57.7
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----EeeCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLSGE 321 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y~G~ 321 (340)
-+++|+|+||+||+++++.|.+-+.+ .+.++||+.+ .++|++++|+++||..+ +|+ +|.|.
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 92 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGG 92 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeecCCC
Confidence 46788899999999999999774421 2457888754 48899999999999876 552 69999
Q ss_pred CCHHHHHHHh
Q 019491 322 QDLSDLAKAS 331 (340)
Q Consensus 322 r~l~~La~~s 331 (340)
++.++|.+|.
T Consensus 93 ~~~~~l~~~~ 102 (103)
T cd03001 93 RTAKAIVSAA 102 (103)
T ss_pred CCHHHHHHHh
Confidence 9999999875
No 19
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.26 E-value=1.6e-11 Score=94.20 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=57.8
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCCCCHHH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD 326 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~ 326 (340)
.+++|+++|||||+++++.+.+.+. .++. .||++.+ .++++++||+++||.++||+ ++.|.++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN--------PQKAMEYGIMAVPAIVINGDVEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC--------HHHHHHcCCccCCEEEECCEEEEecCCCHHH
Confidence 4678999999999999999987432 2243 5665532 47889999999999999987 8899999999
Q ss_pred HHHHhC
Q 019491 327 LAKASG 332 (340)
Q Consensus 327 La~~sg 332 (340)
|.++..
T Consensus 74 l~~~l~ 79 (82)
T TIGR00411 74 LVEAIK 79 (82)
T ss_pred HHHHHH
Confidence 988753
No 20
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.24 E-value=6.2e-11 Score=110.83 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=57.8
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
.-+++|+|+|||||+++++.|.+.+.+ .+..|||+.+ .++|++++|++|||..+ ||+ .+.|.
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~ 125 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGGD 125 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCCC
Confidence 447789999999999999999875421 2456788754 48999999999999876 887 34688
Q ss_pred CCHHHHHHHh
Q 019491 322 QDLSDLAKAS 331 (340)
Q Consensus 322 r~l~~La~~s 331 (340)
++.++|.++.
T Consensus 126 ~s~e~L~~fi 135 (224)
T PTZ00443 126 RSTEKLAAFA 135 (224)
T ss_pred CCHHHHHHHH
Confidence 9999999884
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.24 E-value=2.2e-11 Score=100.71 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=59.4
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 319 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~ 319 (340)
+.-+++|+|+||+||+++++.|.+.+.+ . +..|||+.+ .++|++++|++|||..+ +|+ ++.
T Consensus 25 ~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~~ 96 (111)
T cd02963 25 KPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYHD 96 (111)
T ss_pred CeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEec
Confidence 4457789999999999999998764321 2 457888754 47899999999999886 887 578
Q ss_pred CCCCHHHHHHHhC
Q 019491 320 GEQDLSDLAKASG 332 (340)
Q Consensus 320 G~r~l~~La~~sg 332 (340)
|.++.++|.++..
T Consensus 97 G~~~~~~l~~~i~ 109 (111)
T cd02963 97 SSFTKQHVVDFVR 109 (111)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998763
No 22
>PHA02278 thioredoxin-like protein
Probab=99.21 E-value=8.3e-11 Score=97.28 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=63.9
Q ss_pred HHHHHhhcccC--eEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--
Q 019491 243 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 313 (340)
Q Consensus 243 ~~la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-- 313 (340)
.+|.+++++.+ ++.|+|+||++|+.++|.|.+.+.+ .+.+||.+.+..+ ..+++++++|++.||+.+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEEEE
Confidence 34555554444 6689999999999999999875432 2456777754211 247899999999999887
Q ss_pred CCE---EeeCCCCHHHHHHHh
Q 019491 314 NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 314 nG~---~y~G~r~l~~La~~s 331 (340)
||+ ++.|..+.++|.++-
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhhh
Confidence 887 689999999998864
No 23
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.21 E-value=3.2e-11 Score=97.71 Aligned_cols=74 Identities=16% Similarity=0.365 Sum_probs=58.4
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--Ee
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL 318 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y 318 (340)
..-+++|+|+|||||+++++.|.+.+.+ .+.++||+.+ .++|++++|+++||..+ ||. +|
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~I~~~Pt~~l~~~~~~~~~ 87 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--------SSIASEFGVRGYPTIKLLKGDLAYNY 87 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--------HhHHhhcCCccccEEEEEcCCCceee
Confidence 3447789999999999999998775422 1346888753 48899999999999887 443 69
Q ss_pred eCCCCHHHHHHHhC
Q 019491 319 SGEQDLSDLAKASG 332 (340)
Q Consensus 319 ~G~r~l~~La~~sg 332 (340)
.|.++.++|.++..
T Consensus 88 ~G~~~~~~l~~~~~ 101 (104)
T cd03000 88 RGPRTKDDIVEFAN 101 (104)
T ss_pred cCCCCHHHHHHHHH
Confidence 99999999998863
No 24
>PHA02125 thioredoxin-like protein
Probab=99.21 E-value=6.4e-11 Score=91.64 Aligned_cols=69 Identities=26% Similarity=0.527 Sum_probs=53.1
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE---EeeCC-CCHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK 329 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~---~y~G~-r~l~~La~ 329 (340)
+++|+|+|||||+++++.+.+.+. .+++.+.+. ..++.++++|+++||.. +|+ ++.|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~---~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY---TYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh---eEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 578999999999999999976432 344443331 25889999999999987 775 57885 77899988
Q ss_pred HhC
Q 019491 330 ASG 332 (340)
Q Consensus 330 ~sg 332 (340)
..|
T Consensus 72 ~~~ 74 (75)
T PHA02125 72 KLG 74 (75)
T ss_pred HhC
Confidence 776
No 25
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.20 E-value=3.1e-11 Score=95.77 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=57.6
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc-----c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---Ee
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL 318 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y 318 (340)
.-+++|+|+||+||+++++.|.+.+.+ . +..+||+.+ ..++|++++|+++||+.+ +| + +|
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCcccc
Confidence 347799999999999999999775421 1 346888752 148899999999999987 34 3 69
Q ss_pred eCCCCHHHHHHHh
Q 019491 319 SGEQDLSDLAKAS 331 (340)
Q Consensus 319 ~G~r~l~~La~~s 331 (340)
.|.++.++|.+|.
T Consensus 93 ~g~~~~~~l~~~i 105 (105)
T cd02998 93 EGGRDLEDLVKFV 105 (105)
T ss_pred CCccCHHHHHhhC
Confidence 9999999999873
No 26
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.20 E-value=3.8e-11 Score=95.27 Aligned_cols=72 Identities=25% Similarity=0.441 Sum_probs=57.0
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----- 316 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----- 316 (340)
+.-+++|+|+||+||+.+++.|.+.+.. .+.+|||+.+ ++|.+.++++|||+.+ +|+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~ 89 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPI 89 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCce
Confidence 3447789999999999999999875421 1357898743 5678899999999887 554
Q ss_pred EeeCCCCHHHHHHHh
Q 019491 317 VLSGEQDLSDLAKAS 331 (340)
Q Consensus 317 ~y~G~r~l~~La~~s 331 (340)
+|.|.++.++|.+|.
T Consensus 90 ~~~g~~~~~~l~~fi 104 (104)
T cd02995 90 KYEGDRTLEDLIKFI 104 (104)
T ss_pred EccCCcCHHHHHhhC
Confidence 699999999999873
No 27
>PTZ00102 disulphide isomerase; Provisional
Probab=99.17 E-value=1.4e-10 Score=116.27 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=61.0
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--Ee
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VL 318 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y 318 (340)
+.-+++|+|+||+||+++++.|.+.|. + .+..|||+.+ .++|++++|+||||+++ +|+ +|
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y 121 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNY 121 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEe
Confidence 445789999999999999999877541 1 2457999854 48999999999999887 554 69
Q ss_pred eCCCCHHHHHHHhCC
Q 019491 319 SGEQDLSDLAKASGF 333 (340)
Q Consensus 319 ~G~r~l~~La~~sg~ 333 (340)
.|.++.++|.++..-
T Consensus 122 ~g~~~~~~l~~~l~~ 136 (477)
T PTZ00102 122 SGGRTADGIVSWIKK 136 (477)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988654
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.17 E-value=1.1e-10 Score=92.85 Aligned_cols=74 Identities=30% Similarity=0.520 Sum_probs=57.8
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhh--c---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---Eee
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLS 319 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~ 319 (340)
.-++.|+|+||++|+++++.+.+.+. + . +..+||+.+. ...+|++++|++|||.++ +|+ +|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 92 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYE 92 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeC
Confidence 44778999999999999998866431 1 1 3467887641 258899999999999877 665 699
Q ss_pred CCCCHHHHHHHh
Q 019491 320 GEQDLSDLAKAS 331 (340)
Q Consensus 320 G~r~l~~La~~s 331 (340)
|.++.++|.+|.
T Consensus 93 g~~~~~~l~~~l 104 (104)
T cd02997 93 GERTAEDIIEFM 104 (104)
T ss_pred CCCCHHHHHhhC
Confidence 999999998863
No 29
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.13 E-value=1.4e-10 Score=96.62 Aligned_cols=73 Identities=25% Similarity=0.477 Sum_probs=55.3
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhh--c------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C-------
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N------- 314 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n------- 314 (340)
.-+++|+|+||+||+.+++.|.+-+. + .+..|||+.+. ..++|++++|++|||+++ +
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~lf~~~~~~~~~ 94 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRYFPPFSKEATD 94 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEEECCCCccCCC
Confidence 34678999999999999999977542 1 24578997542 258899999999999987 3
Q ss_pred CEEeeCC-CCHHHHHHH
Q 019491 315 GQVLSGE-QDLSDLAKA 330 (340)
Q Consensus 315 G~~y~G~-r~l~~La~~ 330 (340)
|.+|.|. |..+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 95 GLKQEGPERDVNELREA 111 (114)
T ss_pred CCcccCCccCHHHHHHH
Confidence 3467776 888887543
No 30
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.11 E-value=2.5e-10 Score=93.02 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=57.2
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh--ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
+.-++.|+|+||++|+.++|.|.+.+. ..+ -.||++.+. +..+++++++|+++||.++ ||+ ++.|.
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-----~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~ 90 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-----STMELCRREKIIEVPHFLFYKDGEKIHEEEGI 90 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-----HHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC
Confidence 344778999999999999999987542 233 356665432 1358999999999999877 887 68885
Q ss_pred CCHHHHHHHhCCC
Q 019491 322 QDLSDLAKASGFP 334 (340)
Q Consensus 322 r~l~~La~~sg~~ 334 (340)
. .++|.+..-+.
T Consensus 91 ~-~~~l~~~~~~~ 102 (103)
T cd02985 91 G-PDELIGDVLYY 102 (103)
T ss_pred C-HHHHHHHHHhc
Confidence 4 57777765443
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.10 E-value=4.4e-10 Score=91.31 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=52.5
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh--hc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA--VK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A--~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
+++|+|+|||||+.+.+.|.+-+ .+ .+..||++ + .+++++++|+++||+.+ ||+ +..|.
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~- 90 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYKNGELVAVIRGA- 90 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEECCEEEEEEecC-
Confidence 66899999999999999997643 21 24467776 2 36799999999999887 887 57775
Q ss_pred CHHHHHHHh
Q 019491 323 DLSDLAKAS 331 (340)
Q Consensus 323 ~l~~La~~s 331 (340)
+.++|.++.
T Consensus 91 ~~~~~~~~i 99 (102)
T cd02948 91 NAPLLNKTI 99 (102)
T ss_pred ChHHHHHHH
Confidence 778887764
No 32
>PRK09381 trxA thioredoxin; Provisional
Probab=99.10 E-value=4.5e-10 Score=91.23 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=59.0
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 320 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G 320 (340)
..-+++|+|+|||+|+.+++.|.+.+.+ .+..|||+.+ ..++++++|+++||+.+ +|+ ++.|
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G 93 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVG 93 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEecC
Confidence 3447789999999999999999875422 2568998754 47789999999999988 787 5789
Q ss_pred CCCHHHHHHHh
Q 019491 321 EQDLSDLAKAS 331 (340)
Q Consensus 321 ~r~l~~La~~s 331 (340)
..+.++|.++.
T Consensus 94 ~~~~~~l~~~i 104 (109)
T PRK09381 94 ALSKGQLKEFL 104 (109)
T ss_pred CCCHHHHHHHH
Confidence 99999998875
No 33
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.07 E-value=3.5e-10 Score=83.83 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=54.5
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 331 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s 331 (340)
+++|+++|||+|+++++.|.+. .+.| ||.+.+. . ...++++..++.++||++++|+.+.|. +.++|.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~~~--~--~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEKDS--A--AREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccCCH--H--HHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence 5799999999999999999763 3454 4444331 1 134678889999999999999998885 779998875
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.05 E-value=6.6e-10 Score=87.64 Aligned_cols=70 Identities=26% Similarity=0.464 Sum_probs=56.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh--hc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA--VK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A--~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
+++|+|+||++|+++++.|.+.+ ++ . +..+||+.+ .++|++++|+++||+.+ +|+ +|.|.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--------KDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--------HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 77999999999999998886643 22 2 346788654 58999999999999876 454 69999
Q ss_pred CCHHHHHHHh
Q 019491 322 QDLSDLAKAS 331 (340)
Q Consensus 322 r~l~~La~~s 331 (340)
++.++|.++.
T Consensus 89 ~~~~~l~~~i 98 (102)
T TIGR01126 89 RDLEAIVEFV 98 (102)
T ss_pred CCHHHHHHHH
Confidence 9999998875
No 35
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.04 E-value=1.1e-09 Score=83.01 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=58.8
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh--cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~--~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
+.-+++|+++||++|+++++.+.+.+. .. +.+|||+.+ .+++++++|+++||+.+ +|+ .+.|.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 455889999999999999999987443 23 346777653 48899999999999998 776 68999
Q ss_pred CCHHHHHHHh
Q 019491 322 QDLSDLAKAS 331 (340)
Q Consensus 322 r~l~~La~~s 331 (340)
.+.++|.++.
T Consensus 83 ~~~~~l~~~i 92 (93)
T cd02947 83 DPKEELEEFL 92 (93)
T ss_pred CCHHHHHHHh
Confidence 9989998864
No 36
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.03 E-value=1.4e-10 Score=112.49 Aligned_cols=72 Identities=15% Similarity=0.367 Sum_probs=58.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh--hc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 321 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A--~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~ 321 (340)
++-||||||.|||++.|.|.+-- .+ ++...||+. ...+..+.||+||||.++ ||. .|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 67788999999999999997621 22 345788874 468899999999999887 554 79999
Q ss_pred CCHHHHHHHhCC
Q 019491 322 QDLSDLAKASGF 333 (340)
Q Consensus 322 r~l~~La~~sg~ 333 (340)
|+-|+|.++.-.
T Consensus 119 R~Kd~iieFAhR 130 (468)
T KOG4277|consen 119 REKDAIIEFAHR 130 (468)
T ss_pred ccHHHHHHHHHh
Confidence 999999988643
No 37
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.02 E-value=8.1e-10 Score=94.10 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=59.1
Q ss_pred HHHhhcccC---eEEEccCCCH--HHH--HHHHHHhHHhhc-------cCceeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491 245 LAKHLHAIG---AKMYGAFWCS--HCL--EQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 310 (340)
Q Consensus 245 la~~L~~~g---~~~YgA~WCp--HC~--~qk~lfgk~A~~-------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPT 310 (340)
+.+.+++.. +++|.|+||+ ||+ .+.|.+.+.|.+ .+..|||+.+ .++|+++||+|+||
T Consensus 19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--------~~La~~~~I~~iPT 90 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--------AKVAKKLGLDEEDS 90 (120)
T ss_pred HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--------HHHHHHcCCccccE
Confidence 334444444 6688888884 799 666666554432 2457888754 59999999999999
Q ss_pred eEE--CCE--EeeCCCCHHHHHHHh
Q 019491 311 WVI--NGQ--VLSGEQDLSDLAKAS 331 (340)
Q Consensus 311 w~i--nG~--~y~G~r~l~~La~~s 331 (340)
+++ ||+ .|.|.++.++|.++.
T Consensus 91 l~lfk~G~~v~~~G~~~~~~l~~~l 115 (120)
T cd03065 91 IYVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred EEEEECCEEEEeeCCCCHHHHHHHH
Confidence 887 887 599999999999875
No 38
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.00 E-value=1.3e-09 Score=84.33 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=60.7
Q ss_pred HHHHhhccc--CeEEEccCCCHHHHHHHHHHhHHh--h---cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE-
Q 019491 244 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 313 (340)
Q Consensus 244 ~la~~L~~~--g~~~YgA~WCpHC~~qk~lfgk~A--~---~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i- 313 (340)
.+.+.+++. -+++|+++||++|+++++.|.+.+ . .. +..|||+.+ .++|++++|+++||..+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--------NDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--------HHHHHhCCCCCCCEEEEE
Confidence 344444444 577999999999999999997743 2 22 346787753 48999999999999887
Q ss_pred -CC-E---EeeCCCCHHHHHHHh
Q 019491 314 -NG-Q---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 314 -nG-~---~y~G~r~l~~La~~s 331 (340)
+| + +|.|.++.+++.+|.
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 44 3 699999999998863
No 39
>PRK10996 thioredoxin 2; Provisional
Probab=98.99 E-value=2.5e-09 Score=92.22 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=57.3
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhh---ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
.-++.|+|+||++|+++++.|.+-+. ..+. .||++.+ .+++++++|+++||+.+ ||+ ++.|.
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--------~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~ 125 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE--------RELSARFRIRSIPTIMIFKNGQVVDMLNGA 125 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC--------HHHHHhcCCCccCEEEEEECCEEEEEEcCC
Confidence 34678999999999999999977432 2333 4666533 58899999999999887 887 58999
Q ss_pred CCHHHHHHHhC
Q 019491 322 QDLSDLAKASG 332 (340)
Q Consensus 322 r~l~~La~~sg 332 (340)
.+.++|.++..
T Consensus 126 ~~~e~l~~~l~ 136 (139)
T PRK10996 126 VPKAPFDSWLN 136 (139)
T ss_pred CCHHHHHHHHH
Confidence 99999988753
No 40
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.2e-10 Score=114.74 Aligned_cols=75 Identities=23% Similarity=0.428 Sum_probs=58.4
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhh--cc-----CceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE----E
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAV--KQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----V 317 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~----~ 317 (340)
--.+.||||||+||++++|.+.+.|- +. |+++|-+.|.. ...+|+||||+.. +++ .
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~----------~~~~~~~fPTI~~~pag~k~~pv~ 455 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV----------PSLKVDGFPTILFFPAGHKSNPVI 455 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC----------ccccccccceEEEecCCCCCCCcc
Confidence 33678889999999999999988763 22 56888876532 2258999999887 442 6
Q ss_pred eeCCCCHHHHHHHhCCCCC
Q 019491 318 LSGEQDLSDLAKASGFPEM 336 (340)
Q Consensus 318 y~G~r~l~~La~~sg~~g~ 336 (340)
|.|.|++++|..++--.|.
T Consensus 456 y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 456 YNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cCCCcchHHHHhhhccCCC
Confidence 9999999999999876654
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.98 E-value=2e-09 Score=84.37 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=57.6
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHh--h-cc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEA--V-KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A--~-~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
.-+.+|+++||++|+++++.|.+-+ . .+ +-.|||+.+ .+++++++|+++||+++ +|+ ++.|.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCC
Confidence 3366888999999999999987643 1 12 447888754 47899999999999887 775 58899
Q ss_pred CCHHHHHHHhC
Q 019491 322 QDLSDLAKASG 332 (340)
Q Consensus 322 r~l~~La~~sg 332 (340)
++.++|.++..
T Consensus 88 ~~~~~l~~~l~ 98 (101)
T TIGR01068 88 LPKAALKQLIN 98 (101)
T ss_pred CCHHHHHHHHH
Confidence 99999988763
No 42
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.98 E-value=9.6e-10 Score=112.48 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=58.1
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----Eee
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS 319 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y~ 319 (340)
.-+++|||||||||+.+++.|.+.|.+ .+..|||+.+. ....+++++|++|||.++ ||+ +|+
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~ 446 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYP 446 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCC
Confidence 347789999999999999999886532 24579998652 123357899999999887 553 697
Q ss_pred -CCCCHHHHHHHhC
Q 019491 320 -GEQDLSDLAKASG 332 (340)
Q Consensus 320 -G~r~l~~La~~sg 332 (340)
|.|++++|.+|++
T Consensus 447 ~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 447 SEKRDVDSLMSFVN 460 (463)
T ss_pred CCCCCHHHHHHHHH
Confidence 5899999999874
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.98 E-value=1.6e-09 Score=93.84 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=58.7
Q ss_pred HHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE-
Q 019491 246 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ- 316 (340)
Q Consensus 246 a~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~- 316 (340)
+..-.+.-+++|+|+||++|+.+++.|.+.+. ..+ -.|+.+.+. ..+++++++|+++||+++ ||+
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~------~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK------WLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc------cHHHHHHcCCCCCCEEEEECCCCCE
Confidence 33334455778999999999999999987542 123 345554331 247899999999999886 576
Q ss_pred --EeeCCCCHHHHHHHhC
Q 019491 317 --VLSGEQDLSDLAKASG 332 (340)
Q Consensus 317 --~y~G~r~l~~La~~sg 332 (340)
++.|..+.++|.++.-
T Consensus 90 v~~~~G~~~~~~l~~~l~ 107 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLD 107 (142)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 6899999888876654
No 44
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.97 E-value=1.5e-09 Score=107.30 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=59.3
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----Ee
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VL 318 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~y 318 (340)
-+++|+|+||+||+++++.|.+.|.+ .+..|||+.+ .++|++++|++|||+.+ +|+ +|
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 92 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSDY 92 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeEe
Confidence 36789999999999999999764421 2457899854 48999999999999887 564 59
Q ss_pred eCCCCHHHHHHHhCC
Q 019491 319 SGEQDLSDLAKASGF 333 (340)
Q Consensus 319 ~G~r~l~~La~~sg~ 333 (340)
.|.++.++|.++...
T Consensus 93 ~g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 93 NGPRDADGIVKYMKK 107 (462)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988754
No 45
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.97 E-value=3.2e-09 Score=85.05 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=55.4
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHh--h-ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEA--V-KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A--~-~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
-+++|+|+||++|+++++.+.+-+ . ..+. .||++. ..++.++++|+++||..+ ||+ ++.|.+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--------DQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--------CHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 377899999999999999886632 1 2343 455543 257899999999999887 776 689999
Q ss_pred CHHHHHHHh
Q 019491 323 DLSDLAKAS 331 (340)
Q Consensus 323 ~l~~La~~s 331 (340)
+.++|.++.
T Consensus 88 ~~~~~~~~l 96 (97)
T cd02949 88 MKSEYREFI 96 (97)
T ss_pred cHHHHHHhh
Confidence 999998875
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.96 E-value=2.5e-09 Score=86.34 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=55.6
Q ss_pred ccCeEEEccCCCHHHHHHHHHHh---HHh--hc-cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE-C---CE--
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFG---SEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-N---GQ-- 316 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfg---k~A--~~-~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-n---G~-- 316 (340)
+.-+++|+|+||++|+++++.+- +.+ .. .+. .||++.+.. ...+++++++|+++||..+ + |+
T Consensus 12 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 12 KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP----EITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH----HHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 34477999999999999997652 211 12 333 567764321 1368999999999999887 3 54
Q ss_pred -EeeCCCCHHHHHHHh
Q 019491 317 -VLSGEQDLSDLAKAS 331 (340)
Q Consensus 317 -~y~G~r~l~~La~~s 331 (340)
++.|.++.++|.++.
T Consensus 88 ~~~~G~~~~~~l~~~l 103 (104)
T cd02953 88 LRLPGFLTADEFLEAL 103 (104)
T ss_pred cccccccCHHHHHHHh
Confidence 689999999998874
No 47
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.95 E-value=3.9e-08 Score=103.06 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=58.5
Q ss_pred HHhhcccCeEEEccCCCHHHHHHHHH-HhHH----hhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE---CC
Q 019491 246 AKHLHAIGAKMYGAFWCSHCLEQKQM-FGSE----AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NG 315 (340)
Q Consensus 246 a~~L~~~g~~~YgA~WCpHC~~qk~l-fgk~----A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG 315 (340)
|+.-.+.-++.|+|+||++|+++++. |..+ +.+++. .||.+.+. + +..++.++++|+|+||..+ ||
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~--~~~~l~~~~~v~g~Pt~~~~~~~G 545 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--A--EDVALLKHYNVLGLPTILFFDAQG 545 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--h--hhHHHHHHcCCCCCCEEEEECCCC
Confidence 33334556778999999999999875 5322 123333 56776442 1 2468999999999999887 56
Q ss_pred E-----EeeCCCCHHHHHHHhC
Q 019491 316 Q-----VLSGEQDLSDLAKASG 332 (340)
Q Consensus 316 ~-----~y~G~r~l~~La~~sg 332 (340)
+ ++.|..+.|++.++..
T Consensus 546 ~~i~~~r~~G~~~~~~f~~~L~ 567 (571)
T PRK00293 546 QEIPDARVTGFMDAAAFAAHLR 567 (571)
T ss_pred CCcccccccCCCCHHHHHHHHH
Confidence 5 4679999999987753
No 48
>PLN02309 5'-adenylylsulfate reductase
Probab=98.95 E-value=2.1e-09 Score=109.94 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=58.6
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhh-hCCCcccceeEE--CCE----
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ---- 316 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~-~~~I~GyPTw~i--nG~---- 316 (340)
.+.-+++||||||+||+++++.|.+.|.+ .+..|||+.+ +.++|+ +++|++|||.++ +|.
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v 437 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPI 437 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCee
Confidence 34457799999999999999999886522 2457888733 247786 589999999887 443
Q ss_pred EeeC-CCCHHHHHHHhC
Q 019491 317 VLSG-EQDLSDLAKASG 332 (340)
Q Consensus 317 ~y~G-~r~l~~La~~sg 332 (340)
+|.| .|+.+.|.+|+.
T Consensus 438 ~Y~~~~R~~~~L~~fv~ 454 (457)
T PLN02309 438 KYPSEKRDVDSLLSFVN 454 (457)
T ss_pred ecCCCCcCHHHHHHHHH
Confidence 7975 699999998864
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.94 E-value=3.2e-09 Score=88.47 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=58.1
Q ss_pred HHHhhcccC--eEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491 245 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 316 (340)
Q Consensus 245 la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~ 316 (340)
+++++++.. +++|+|+|||+|+.+++.+.+-+.. ++ ..||.+. .+++.++++|++.||..+ ||+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~--------~~~l~~~~~v~~vPt~~i~~~g~ 86 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE--------DKEKAEKYGVERVPTTIFLQDGG 86 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc--------CHHHHHHcCCCcCCEEEEEeCCe
Confidence 666665544 3467899999999999999875432 23 3555543 258899999999999998 322
Q ss_pred -----EeeCCCCHHHHHHHh
Q 019491 317 -----VLSGEQDLSDLAKAS 331 (340)
Q Consensus 317 -----~y~G~r~l~~La~~s 331 (340)
++.|..+-++|.++.
T Consensus 87 ~~~~~~~~G~~~~~el~~~i 106 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLI 106 (113)
T ss_pred ecceEEEEecCchHHHHHHH
Confidence 688988888887764
No 50
>PTZ00051 thioredoxin; Provisional
Probab=98.93 E-value=4.2e-09 Score=83.47 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=52.2
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
.-+.+|+|+||++|+++++.|.+.+.+ .+. .|||+.+ .+++++++|+++||..+ ||+ ++.|.
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~- 90 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL--------SEVAEKENITSMPTFKVFKNGSVVDTLLGA- 90 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch--------HHHHHHCCCceeeEEEEEeCCeEEEEEeCC-
Confidence 446789999999999999999875432 233 5666532 58899999999999877 776 58886
Q ss_pred CHHHHHH
Q 019491 323 DLSDLAK 329 (340)
Q Consensus 323 ~l~~La~ 329 (340)
..++|.+
T Consensus 91 ~~~~~~~ 97 (98)
T PTZ00051 91 NDEALKQ 97 (98)
T ss_pred CHHHhhc
Confidence 5577654
No 51
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.93 E-value=7.9e-09 Score=91.35 Aligned_cols=71 Identities=10% Similarity=0.228 Sum_probs=54.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCcc------cceeEE--CCE---
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ--- 316 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~G------yPTw~i--nG~--- 316 (340)
+++|+|+|||||+++++.|.+.+.+ .+..|||+.+ .++|++++|++ +||.++ ||+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--------HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 7899999999999999999875422 2357888754 48899999988 999887 887
Q ss_pred EeeC-----------CCCHHHHHHHhC
Q 019491 317 VLSG-----------EQDLSDLAKASG 332 (340)
Q Consensus 317 ~y~G-----------~r~l~~La~~sg 332 (340)
++.| .-+.|++.+...
T Consensus 123 r~~G~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 123 RRPYYNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred EEeccccCccccccccccHHHHHHhcc
Confidence 4564 456677766544
No 52
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.92 E-value=7.4e-09 Score=81.76 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=54.2
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
+.=+++|+|+||++|+++++.|.+.+.+ .+.++.++.+. ..+++++++|+++||+.+ +|+ ++.|.
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~- 87 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA- 87 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-
Confidence 3446789999999999999999875533 34444443331 258899999999999887 787 46775
Q ss_pred CHHHHHHHh
Q 019491 323 DLSDLAKAS 331 (340)
Q Consensus 323 ~l~~La~~s 331 (340)
+.++|.+..
T Consensus 88 ~~~~l~~~~ 96 (97)
T cd02984 88 DPKELAKKV 96 (97)
T ss_pred CHHHHHHhh
Confidence 568887754
No 53
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-09 Score=107.23 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=67.2
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 314 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n 314 (340)
...+.-.-++..+++|+||||+||+++.+.|.+.+. + .+.-|||+.+ .++|++++|+||||..+ +
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcC
Confidence 344556667778999999999999999999987532 2 2557888765 58999999999999887 5
Q ss_pred C---EEeeCCCCHHHHHHHhCC
Q 019491 315 G---QVLSGEQDLSDLAKASGF 333 (340)
Q Consensus 315 G---~~y~G~r~l~~La~~sg~ 333 (340)
| ..|+|.++.++++++..-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 111 GKKPIDYSGPRNAESLAEFLIK 132 (383)
T ss_pred CCceeeccCcccHHHHHHHHHH
Confidence 5 269999999999987643
No 54
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.88 E-value=3.1e-09 Score=79.32 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=45.5
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG 320 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G 320 (340)
.+++|+++|||||+++++++.+.+. ..+.+.+.+.+. .+++.+++||++.||..+||+ ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 3679999999999999999976432 234443333221 247888999999999999997 4555
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=98.88 E-value=3.3e-09 Score=106.35 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=59.8
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhh--c-----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-E---Ee
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAV--K-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VL 318 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~--~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG-~---~y 318 (340)
.-+++|+|+||+||+++++.|.+.|. + .+..+||+.+. ..|++++|++|||..+ +| + +|
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~--------~~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE--------TPLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc--------cchhcCCCcccCeEEEEECCCcceeEe
Confidence 34778999999999999999977542 1 24578998652 5699999999999876 33 3 68
Q ss_pred eCCCCHHHHHHHhCCCC
Q 019491 319 SGEQDLSDLAKASGFPE 335 (340)
Q Consensus 319 ~G~r~l~~La~~sg~~g 335 (340)
.|.++.++|.++..-..
T Consensus 449 ~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 449 EGERTVEGFKEFVNKHA 465 (477)
T ss_pred cCcCCHHHHHHHHHHcC
Confidence 99999999999876544
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.87 E-value=1e-08 Score=85.48 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhH------HhhccCc--eeECCCCCC-----CCChhhHhhhhhCCCcc
Q 019491 242 ALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGS------EAVKQLN--YVECFPDGY-----RKGTKIAKACSDAKIEG 307 (340)
Q Consensus 242 ~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk------~A~~~l~--yVeC~~~g~-----~~~~k~~~lC~~~~I~G 307 (340)
+++-|+.=+ +.-+++|+|+|||||+++++.+.+ ...+.+. +||.+.+.. ....+..+++.+++|++
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344444444 456789999999999999986531 1112233 344442210 00011368899999999
Q ss_pred cceeEE---C-CE---EeeCCCCHHHHHHHh
Q 019491 308 FPTWVI---N-GQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 308 yPTw~i---n-G~---~y~G~r~l~~La~~s 331 (340)
+||.++ + |+ ++.|..+.+++.++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l 115 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYL 115 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence 999877 4 55 689999988887765
No 57
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.84 E-value=5.7e-09 Score=88.38 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=44.5
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc---cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 316 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~---~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~ 316 (340)
-++.|+|+|||+|+.++|.|.+.|.+ .+ -+||.+.+ .++.++++|++.||+.+ ||+
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--------~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--------PDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCE
Confidence 46789999999999999999886533 23 35666543 58999999999999887 886
No 58
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=2.8e-09 Score=110.18 Aligned_cols=68 Identities=26% Similarity=0.497 Sum_probs=53.5
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc--------cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE------C---C
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---G 315 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~--------~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i------n---G 315 (340)
.++.|++.|||||++.+|.|.+-|.. ++..|||+.+. | .++|++++|++|||+.. | |
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G 133 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDG 133 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCC
Confidence 36678899999999999999986532 36789999653 4 48999999999999987 3 6
Q ss_pred EEeeCCCCHHH
Q 019491 316 QVLSGEQDLSD 326 (340)
Q Consensus 316 ~~y~G~r~l~~ 326 (340)
+.++|....+|
T Consensus 134 ~~~~~~~~~~e 144 (606)
T KOG1731|consen 134 SDVSGPVIPSE 144 (606)
T ss_pred CcccCCcchhh
Confidence 77888543333
No 59
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.82 E-value=1.1e-08 Score=86.37 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=56.1
Q ss_pred eEEEccCC--CHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 254 AKMYGAFW--CSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 254 ~~~YgA~W--CpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
+++|+|.| ||+|++++|.|.+.|.+ . +..||++.+ .++..+++|++.||.++ ||+ ++.|.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--------~~la~~f~V~sIPTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--------QALAARFGVLRTPALLFFRDGRYVGVLAGI 102 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--------HHHHHHcCCCcCCEEEEEECCEEEEEEeCc
Confidence 67999997 99999999999886532 2 336777654 48999999999999887 897 57899
Q ss_pred CCHHHHHH
Q 019491 322 QDLSDLAK 329 (340)
Q Consensus 322 r~l~~La~ 329 (340)
++.++|.+
T Consensus 103 ~~~~e~~~ 110 (111)
T cd02965 103 RDWDEYVA 110 (111)
T ss_pred cCHHHHhh
Confidence 99999864
No 60
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.81 E-value=1.4e-08 Score=79.06 Aligned_cols=68 Identities=12% Similarity=0.246 Sum_probs=50.1
Q ss_pred EEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeCC-CCHHHHHHH
Q 019491 256 MYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLAKA 330 (340)
Q Consensus 256 ~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G~-r~l~~La~~ 330 (340)
.|+|+|||+|+.+++.|.+.+.+ .+..++.+ + .+...++||.+.||..+||+ .++|. .+.++|.++
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~--------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D--------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKEI 74 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C--------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHH
Confidence 34579999999999999875432 23445544 1 24478899999999999997 57785 466899887
Q ss_pred hC
Q 019491 331 SG 332 (340)
Q Consensus 331 sg 332 (340)
.+
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 64
No 61
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.78 E-value=1.2e-08 Score=78.58 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=53.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhcc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 328 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La 328 (340)
+++|+++|||+|++.++++.+.. .. ..++|.+.+.... .-+..+-+..|+.++|+..+||+...|..++.++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~-i~~~~~~~~v~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN-VKPAYEVVELDQLSNGS-EIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC-CCCCCEEEEeeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 47899999999999999998864 23 5678887653211 11223555679999999999999888876665554
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.78 E-value=2e-08 Score=92.13 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=56.5
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEEeeCCCCHHH
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQVLSGEQDLSD 326 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~y~G~r~l~~ 326 (340)
...+++|+|+|||||+.+++.+.+-+.+ .+.++..+.+. ..++++++||+++||..+ +|+++.|..+.++
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~ 207 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQ 207 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEEECCCCHHH
Confidence 3346679999999999999988775432 34433333332 258899999999999998 4556999999999
Q ss_pred HHHHh
Q 019491 327 LAKAS 331 (340)
Q Consensus 327 La~~s 331 (340)
|.++.
T Consensus 208 l~~~l 212 (215)
T TIGR02187 208 FLEYI 212 (215)
T ss_pred HHHHH
Confidence 98875
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.78 E-value=2.6e-08 Score=84.49 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=56.5
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCC---hhhHhhhhhC----CCcccceeEE--CCE--
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKG---TKIAKACSDA----KIEGFPTWVI--NGQ-- 316 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~---~k~~~lC~~~----~I~GyPTw~i--nG~-- 316 (340)
+..+++||++|||+|+.++|.+.+.+. ..+-|||-+.+....- ....++.+++ +|.|.||.++ ||+
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 445889999999999999999987542 2366888875531110 0123555554 5667999887 886
Q ss_pred -EeeC-CCCHHHHHHHh
Q 019491 317 -VLSG-EQDLSDLAKAS 331 (340)
Q Consensus 317 -~y~G-~r~l~~La~~s 331 (340)
+..| ..+.++|.++.
T Consensus 104 ~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 104 SVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEEeCCCCCHHHHHHHh
Confidence 5778 45699998874
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.75 E-value=2.4e-08 Score=91.67 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=56.7
Q ss_pred ccCeEEEcc---CCCHHHHHHHHHHhHHhhc--c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE----E
Q 019491 251 AIGAKMYGA---FWCSHCLEQKQMFGSEAVK--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 317 (340)
Q Consensus 251 ~~g~~~YgA---~WCpHC~~qk~lfgk~A~~--~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----~ 317 (340)
...+++|.+ +|||||+.+++.+.+.+.+ + +..|+++.+. ..+++++++|+++||..+ ||+ +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 445778888 9999999999999876432 2 3467776542 369999999999999887 553 6
Q ss_pred eeCCCCHHHHHHH
Q 019491 318 LSGEQDLSDLAKA 330 (340)
Q Consensus 318 y~G~r~l~~La~~ 330 (340)
+.|..+.++|.++
T Consensus 94 ~~G~~~~~~l~~~ 106 (215)
T TIGR02187 94 YTGIPAGYEFAAL 106 (215)
T ss_pred EeecCCHHHHHHH
Confidence 8899888777544
No 65
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.74 E-value=3.2e-08 Score=82.53 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=44.1
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 316 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~ 316 (340)
.-+++|+|+||++|+.+++.+.+.+.+ .+ -+||.+.+ .++.++++|++.||..+ ||+
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~--------~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA--------PFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC--------HHHHHHCCCccCCEEEEEECCE
Confidence 336688999999999999999875432 23 35665533 58899999999999887 886
No 66
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.73 E-value=1.9e-08 Score=83.16 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=46.6
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCC
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 322 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r 322 (340)
.-++.|+||||++|+.+++.|.+.|.+ .+. .||++. . +++++++|+++||+++ ||+ ++.|.+
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~--------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK--------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh--------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 346789999999999999999875532 243 455542 3 7899999999999887 887 455644
No 67
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.73 E-value=3.5e-08 Score=79.49 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=60.0
Q ss_pred HHHHHhhccc-CeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-Ee
Q 019491 243 LSLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VL 318 (340)
Q Consensus 243 ~~la~~L~~~-g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y 318 (340)
++.++.|++. .+..|.++|||+|...++++.+.+.. ++.+..-+.+. ..++.+++||.+.||..+||+ .+
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEE
Confidence 3444566665 68899999999999999999875432 34433333221 357899999999999999998 57
Q ss_pred eCCCCHHHHHH
Q 019491 319 SGEQDLSDLAK 329 (340)
Q Consensus 319 ~G~r~l~~La~ 329 (340)
.|..+.+++..
T Consensus 78 ~G~~~~~e~~~ 88 (89)
T cd03026 78 FGRMTLEEILA 88 (89)
T ss_pred eCCCCHHHHhh
Confidence 89888888753
No 68
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.72 E-value=1.6e-08 Score=82.07 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=49.1
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhH-Hhh-c----cC--ceeECCCCCC------------CCChhhHhhhhhCCCcccce
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGS-EAV-K----QL--NYVECFPDGY------------RKGTKIAKACSDAKIEGFPT 310 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk-~A~-~----~l--~yVeC~~~g~------------~~~~k~~~lC~~~~I~GyPT 310 (340)
+.-+.+|++||||+|+++.+...+ .+. . .+ -+++.+.+.. +-.....++.++.||+|+||
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt 85 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT 85 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence 444789999999999999775543 111 1 22 2445442210 00012357899999999999
Q ss_pred eEE---CCE---EeeCCCCHHHHHHHh
Q 019491 311 WVI---NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 311 w~i---nG~---~y~G~r~l~~La~~s 331 (340)
+.+ +|+ ++.|-.+.++|.++.
T Consensus 86 ~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 86 IVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 998 477 789999999998763
No 69
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.2e-08 Score=93.45 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=70.2
Q ss_pred CchhHHHHHHhhcc-cCeEEEccCCCHHHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491 238 SSPFALSLAKHLHA-IGAKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 311 (340)
Q Consensus 238 S~~~~~~la~~L~~-~g~~~YgA~WCpHC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw 311 (340)
+...+..+-+..++ .-++.|+||||+||+++.|...|.+.. ++.+|||+.+ +.+..++||++.||-
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiqsIPtV 101 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQSIPTV 101 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcCcCCeE
Confidence 34555566666666 557789999999999999999885422 3789999965 588999999999996
Q ss_pred EE--CCE---EeeCCCCHHHHHHHhCC
Q 019491 312 VI--NGQ---VLSGEQDLSDLAKASGF 333 (340)
Q Consensus 312 ~i--nG~---~y~G~r~l~~La~~sg~ 333 (340)
.. +|+ -+.|.+.-+.|.+|..-
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~ 128 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDK 128 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHH
Confidence 64 998 48999999999988754
No 70
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.58 E-value=1.8e-07 Score=69.17 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=50.7
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 330 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~ 330 (340)
+++|+++|||+|+++++++.+. ......+|.+.+. . ...++.+..++.++|+++++|+.+.|.. .++|.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~--~--~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP--E--ALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH--H--HHHHHHHHcCCcccCEEEECCEEEecCC-HHHHHhh
Confidence 6899999999999999999763 2233456655432 1 1234444458999999999999888864 4677765
No 71
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.57 E-value=5e-08 Score=94.86 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=64.2
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc---c-------CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 316 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~-------l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~-- 316 (340)
+.-++-|+|.||+--+.++|.|.+.|.+ + .+.|||+.+ .++..++.|.-|||+++ ||+
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~~ 85 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEMM 85 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccchh
Confidence 3446778899999999999999986532 1 458999864 58999999999999998 885
Q ss_pred --EeeCCCCHHHHHHHhCCCC
Q 019491 317 --VLSGEQDLSDLAKASGFPE 335 (340)
Q Consensus 317 --~y~G~r~l~~La~~sg~~g 335 (340)
.|.|.|+.+.|.++...+-
T Consensus 86 ~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 86 KREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccchhHHHHHHHHHHHh
Confidence 6999999999999986543
No 72
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.1e-08 Score=95.34 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=62.7
Q ss_pred HHhhcccCeEEEccCCCHHHHHHHHHHhHHhh-----c--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC-
Q 019491 246 AKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 315 (340)
Q Consensus 246 a~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~-----~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG- 315 (340)
.+.-++.=.++|+||||+||+++++.|.+.+. . .+..+||+.+ ..+|++.+|++|||.++ +|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~--------~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH--------KSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH--------HHHhhhhcccCCceEEEecCCC
Confidence 33444555788899999999999999988652 1 2457888732 58899999999999987 33
Q ss_pred ---EEeeCCCCHHHHHHHhCCC
Q 019491 316 ---QVLSGEQDLSDLAKASGFP 334 (340)
Q Consensus 316 ---~~y~G~r~l~~La~~sg~~ 334 (340)
+.|+|.|+.+.+.+++--.
T Consensus 230 ~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 230 EDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred cccccccccccHHHHHHHHHhh
Confidence 3589999999999987653
No 73
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.49 E-value=3.6e-07 Score=68.95 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=47.6
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhh-CCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVINGQVLSGEQDLSDLAKA 330 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~-~~I~GyPTw~inG~~y~G~r~l~~La~~ 330 (340)
+++|+++|||+|++.++.+.+. ......||.+.+... ...+-+. .++.+.||.+++|.+.-..-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~~~----~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDEGA----ADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCHhH----HHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHH
Confidence 6799999999999999999774 334556777654211 1121122 3899999998844334446666777654
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.49 E-value=2.2e-07 Score=91.96 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=57.0
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHh--h-c---c--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE-----
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----- 316 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A--~-~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~----- 316 (340)
.-+++|+|+||+||+++++.|.+.+ . . . +.+|||+.+ +... .+|++|||..+ +|+
T Consensus 366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~ 435 (462)
T TIGR01130 366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPV 435 (462)
T ss_pred eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCce
Confidence 3377899999999999999987743 1 1 2 457888754 2233 89999999887 442
Q ss_pred EeeCCCCHHHHHHHhCCCCC
Q 019491 317 VLSGEQDLSDLAKASGFPEM 336 (340)
Q Consensus 317 ~y~G~r~l~~La~~sg~~g~ 336 (340)
+|.|.++.++|.++......
T Consensus 436 ~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 436 PYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EecCcCCHHHHHHHHHhcCC
Confidence 59999999999999876543
No 75
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.5e-07 Score=76.36 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=54.4
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhcc--Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 321 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~--l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~ 321 (340)
+.=++.|+|.|||-|+.++|.|.+.|.++ +. .||+++ + .++|++.+|++.||..+ ||+ ++.|.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-----HhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 44467788999999999999999987543 33 577765 2 48899999999999887 887 46676
Q ss_pred CCHHHHHHHh
Q 019491 322 QDLSDLAKAS 331 (340)
Q Consensus 322 r~l~~La~~s 331 (340)
.. ++|.+..
T Consensus 94 ~~-~~l~~~i 102 (106)
T KOG0907|consen 94 NK-AELEKKI 102 (106)
T ss_pred CH-HHHHHHH
Confidence 44 3665543
No 76
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.46 E-value=4.1e-07 Score=74.57 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=57.5
Q ss_pred HhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHH
Q 019491 247 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 326 (340)
Q Consensus 247 ~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~ 326 (340)
+.+++..+++|+.+|||+|++.|.++.+. .....+||.+.+.... ..+..+-+..|-+.+|..+|||+..-|-.++.+
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGK-DIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHH-HHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 45667779999999999999999999874 3345678887553211 112233344588999999999998888777665
Q ss_pred HH
Q 019491 327 LA 328 (340)
Q Consensus 327 La 328 (340)
|.
T Consensus 81 l~ 82 (99)
T TIGR02189 81 LH 82 (99)
T ss_pred HH
Confidence 54
No 77
>PHA03050 glutaredoxin; Provisional
Probab=98.45 E-value=7e-07 Score=74.65 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=59.4
Q ss_pred HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCC
Q 019491 244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 321 (340)
Q Consensus 244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~ 321 (340)
.+-+.+++..+++|..+|||+|++.|.+|.+.... ...++|.+.++.+.+. +.++=+..|-+..|+.+|||+..-|-
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~-~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL-RDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHH-HHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 34566777889999999999999999999774221 3456777653222111 33444556889999999999988777
Q ss_pred CCHHHHH
Q 019491 322 QDLSDLA 328 (340)
Q Consensus 322 r~l~~La 328 (340)
.++.+|.
T Consensus 84 ddl~~l~ 90 (108)
T PHA03050 84 SDLLEID 90 (108)
T ss_pred HHHHHHH
Confidence 6666654
No 78
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.41 E-value=5.5e-07 Score=69.19 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=53.1
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~ 329 (340)
+++|+++|||+|++.++++.+. .....++|.+.+...... +..+-+..|+.++|+..+||+..-|-.++.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL-GVKPAVVELDQHEDGSEI-QDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc-CCCcEEEEEeCCCChHHH-HHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 6899999999999999999985 334567777655321110 1233455689999999999988777676666653
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.39 E-value=7.3e-07 Score=74.97 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=48.1
Q ss_pred hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcc--cceeEE-
Q 019491 240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 313 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~G--yPTw~i- 313 (340)
..+++.|+.-++.-++.|+|+||++|+++++.|.+.+. ....+|-.+-+..+. ..-+++++.| +||..+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEE
Confidence 45667777777777889999999999999998876422 122344443332111 2234678887 999887
Q ss_pred --CCE
Q 019491 314 --NGQ 316 (340)
Q Consensus 314 --nG~ 316 (340)
+|+
T Consensus 84 ~~~Gk 88 (117)
T cd02959 84 DPSGD 88 (117)
T ss_pred CCCCC
Confidence 564
No 80
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.38 E-value=2e-06 Score=75.61 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=51.6
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc--c---CceeECCCCCCCCChhhHhhhhhCCCcccceeE-E--CCE----EeeC-
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK--Q---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-I--NGQ----VLSG- 320 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~---l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~-i--nG~----~y~G- 320 (340)
++-|||.|||+|+.+.|.+.+-|.+ . +-.||.+.+ +++.++++|++-||.+ + ||+ +..|
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~--------~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV--------PDFNTMYELYDPCTVMFFFRNKHIMIDLGTGN 98 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC--------HHHHHHcCccCCCcEEEEEECCeEEEEEeccc
Confidence 5678899999999999999886532 2 234666533 5999999999876655 4 776 4677
Q ss_pred -------CCCHHHHHHHh
Q 019491 321 -------EQDLSDLAKAS 331 (340)
Q Consensus 321 -------~r~l~~La~~s 331 (340)
..+.++|.+..
T Consensus 99 ~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 99 NNKINWALKDKQEFIDIV 116 (142)
T ss_pred ccccccccCCHHHHHHHH
Confidence 56777777654
No 81
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.2e-06 Score=77.56 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc-----CceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491 238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 312 (340)
Q Consensus 238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~ 312 (340)
|...-.+....=+..-+++|+|+||+-|+.+.|...+-+.++ +..||-+.+ .++..+++|+.+||.+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~--------~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH--------PELAEDYEISAVPTVL 120 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc--------cchHhhcceeeeeEEE
Confidence 334444444444555588999999999999999887754332 334555433 4889999999999988
Q ss_pred E--CCE---EeeCCCCHHHHHHHh
Q 019491 313 I--NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 313 i--nG~---~y~G~r~l~~La~~s 331 (340)
+ ||+ +.-|..+-+.|.++.
T Consensus 121 vfknGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 121 VFKNGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred EEECCEEeeeecccCCHHHHHHHH
Confidence 7 897 578999988887764
No 82
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.36 E-value=8.3e-07 Score=69.86 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=50.3
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh--ccCce--eECCCCCCCCChhhHhhhh--hCCCcccceeEECCEEeeCCCCHHH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACS--DAKIEGFPTWVINGQVLSGEQDLSD 326 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~y--VeC~~~g~~~~~k~~~lC~--~~~I~GyPTw~inG~~y~G~r~l~~ 326 (340)
.+++|+.+|||+|++.|+++.+... ..++| +|.+.++.. ..++=+ ..+++.+|+..|||+...|-.++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~----~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS----KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH----HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 4789999999999999999987432 24554 555443211 122222 2356899999999999888777777
Q ss_pred HHH
Q 019491 327 LAK 329 (340)
Q Consensus 327 La~ 329 (340)
+.+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 654
No 83
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.36 E-value=1.4e-06 Score=74.24 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=53.5
Q ss_pred cCeEEEcc-------CCCHHHHHHHHHHhHHhh--c-cCceeECCCCCCC--CChhhHhhhhhCCCc-ccceeEE--CCE
Q 019491 252 IGAKMYGA-------FWCSHCLEQKQMFGSEAV--K-QLNYVECFPDGYR--KGTKIAKACSDAKIE-GFPTWVI--NGQ 316 (340)
Q Consensus 252 ~g~~~YgA-------~WCpHC~~qk~lfgk~A~--~-~l~yVeC~~~g~~--~~~k~~~lC~~~~I~-GyPTw~i--nG~ 316 (340)
.-++.|+| +|||+|+.+++.+.+.+. . .+.++.++-+... ++ +..++-++++|+ +.||+.+ +|+
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d-~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRD-PNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccC-cchhhHhccCcccCCCEEEEEcCCc
Confidence 34778889 999999999998877432 2 3555555543210 00 134778889999 9999887 677
Q ss_pred EeeCCC--CHHHHHHH
Q 019491 317 VLSGEQ--DLSDLAKA 330 (340)
Q Consensus 317 ~y~G~r--~l~~La~~ 330 (340)
+..|.. +.+.|..+
T Consensus 102 ~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 102 RLVEDECLQADLVEMF 117 (119)
T ss_pred eecchhhcCHHHHHHh
Confidence 877776 65555554
No 84
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.35 E-value=7.3e-07 Score=68.79 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=53.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~ 329 (340)
+++|+.+|||+|++.+++|.+. .....++|.+.+.. .+.++-+..|..++|+.++||+..-|-.++.++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~~----~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDPA----LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCHH----HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 4799999999999999999874 33456778775421 13444455689999999999998888777777654
No 85
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.33 E-value=8.3e-07 Score=69.25 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=50.0
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCH
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 324 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l 324 (340)
+..+++|+.+|||+|++.|.++.+. ......+|.+.+. . ..++-+..|.+.+|..++||+..-|-.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l 74 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDEL 74 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHH
Confidence 4458899999999999999999764 3334467776542 1 23455557999999999999887776443
No 86
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.33 E-value=7.3e-07 Score=65.32 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=51.1
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 328 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La 328 (340)
+++|+++|||+|++.++.+.+. ...+..+|...+.. ...++-+..+...+|+..+||+.+.|-.++.+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-~i~~~~~di~~~~~----~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-GIEFEEIDILEDGE----LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-CCcEEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 6799999999999999999875 22344566654421 1234455568899999999999888876666553
No 87
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.32 E-value=1.7e-06 Score=71.90 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhcc-Cce-------------------------eECCCCCCCCChhh
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNY-------------------------VECFPDGYRKGTKI 296 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~-l~y-------------------------VeC~~~g~~~~~k~ 296 (340)
+.++..-.+.-+++|+|.|||+|+++.+.+.+.+.+. +.. +.+++ +
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~--------~ 89 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDP--------D 89 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC--------c
Confidence 4444443444577888999999999998876643221 222 22222 2
Q ss_pred HhhhhhCCCcccceeE-E--CCE---EeeCCCCHHHH
Q 019491 297 AKACSDAKIEGFPTWV-I--NGQ---VLSGEQDLSDL 327 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~-i--nG~---~y~G~r~l~~L 327 (340)
.+++++++|+++|+.+ + +|+ ++.|..+.++|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4778899999999644 5 676 58899887765
No 88
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.30 E-value=7.5e-07 Score=65.55 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=44.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
+++|+.+|||||++.|+++.+. .....++|.+.+.. .+.++-+..|..++|+.++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~~----~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDEE----AREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSHH----HHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccchh----HHHHHHHHcCCCccCEEEECCEE
Confidence 4799999999999999999764 33456788876531 13444444599999999999974
No 89
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.27 E-value=1.7e-06 Score=65.58 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=52.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCc-ccceeEECCEEeeCCCCHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~-GyPTw~inG~~y~G~r~l~~La~ 329 (340)
+++|+.+|||+|++.|.++.+. .....++|.+.+. . .+.++=+..|.. ++|+.++||+..-|-.++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~---~-~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP---A-LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH---H-HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 6799999999999999999874 2234456665441 1 123444446777 99999999999988888887764
No 90
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.26 E-value=2.6e-06 Score=65.05 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=53.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 330 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~ 330 (340)
+++|+.++||+|++.|+.+.+. .....++|.+.+. +..+..++.|..++|+.++||+..-|..+.++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 4799999999999999999863 3334457776542 124555667999999999988766666888888775
No 91
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.25 E-value=1.1e-06 Score=67.06 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=52.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 328 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La 328 (340)
+++|+.+|||+|++.+.++.+. .....++|...+.. .+.++-+..+-..+|+.++||+.+-|-.++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~~----~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFPE----RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6799999999999999999874 33455677765421 1345555567789999999999888877776653
No 92
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.24 E-value=2e-06 Score=68.45 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=49.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCC--CcccceeEECCEEeeCCCCHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~inG~~y~G~r~l~~La~ 329 (340)
+++|+.+|||+|++.|+++.+...+ .+.|.+.+-+..... ..++-+..| ++..|+..+||+..-|-.++.++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~--~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS--KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH--HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 5799999999999999999875322 345544433221110 122333334 5899999999998888877777654
No 93
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.22 E-value=6.3e-06 Score=71.61 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=59.6
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhh--c--cC--ceeECCCCCCCC--------------ChhhHhhhh
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QL--NYVECFPDGYRK--------------GTKIAKACS 301 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~--~--~l--~yVeC~~~g~~~--------------~~k~~~lC~ 301 (340)
.+.+.+.-.+.-+.+|+|+|||+|+++.+.|.+.+. + .+ -.|+++.+...- -....++++
T Consensus 53 ~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 53 KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 345655434445678889999999998887766431 1 12 356665331000 001247899
Q ss_pred hCCCcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491 302 DAKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 302 ~~~I~GyPTw~i---nG~---~y~G~r~l~~La~~s 331 (340)
+++|+++|+..+ ||+ .+.|..+.++|.++.
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 999999998665 676 579999999998765
No 94
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.21 E-value=2.9e-06 Score=67.63 Aligned_cols=74 Identities=16% Similarity=0.043 Sum_probs=55.3
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhc---cCc--eeECCCCCCCCChhhHhhhhhCCCc--ccceeEE--C--CEEe-
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQVL- 318 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~--yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i--n--G~~y- 318 (340)
..-+.+|+++||++|++.++.|.+-|.+ ++. +||++.+ .++++.+||+ ++||..+ + |++|
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~--------~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF--------GRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh--------HHHHHHcCCChhhCCEEEEEecccccccC
Confidence 3457789999999999999999886632 244 5666532 4789999999 9999887 4 5543
Q ss_pred -e-CCCCHHHHHHHhC
Q 019491 319 -S-GEQDLSDLAKASG 332 (340)
Q Consensus 319 -~-G~r~l~~La~~sg 332 (340)
. |..+.++|.+|..
T Consensus 85 ~~~~~~~~~~l~~fi~ 100 (103)
T cd02982 85 MPEEELTAESLEEFVE 100 (103)
T ss_pred CCccccCHHHHHHHHH
Confidence 3 3348899988863
No 95
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.20 E-value=3.5e-06 Score=75.86 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=50.2
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhcc--Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE---eeC---
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSG--- 320 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~--l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~---y~G--- 320 (340)
-++.|+|+|||+|+.+.+.+.+.|.+. +. .||++. . +++.+++|++.||+.+ ||+. +.|
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--------~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~ 156 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--------T-GASDEFDTDALPALLVYKGGELIGNFVRVTE 156 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--------h-hhHHhCCCCCCCEEEEEECCEEEEEEechHH
Confidence 366889999999999999998876432 33 455542 2 6788999999999887 8873 222
Q ss_pred ----CCCHHHHHHHh
Q 019491 321 ----EQDLSDLAKAS 331 (340)
Q Consensus 321 ----~r~l~~La~~s 331 (340)
..+.++|..+.
T Consensus 157 ~~g~~f~~~~le~~L 171 (175)
T cd02987 157 DLGEDFDAEDLESFL 171 (175)
T ss_pred hcCCCCCHHHHHHHH
Confidence 44556666554
No 96
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.18 E-value=5.8e-06 Score=79.33 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=59.9
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCC---CChhhHhhhhhCCCcccceeEE---
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI--- 313 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~---~~~k~~~lC~~~~I~GyPTw~i--- 313 (340)
..+++.-.+.++++|+|.|||+|+++++.+.+-+.+ .+-.|+.+.+... .-.....+.+++||+++||..+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 455555567788899999999999999988664322 2335555432100 0000135688999999999887
Q ss_pred CCE----EeeCCCCHHHHHHHh
Q 019491 314 NGQ----VLSGEQDLSDLAKAS 331 (340)
Q Consensus 314 nG~----~y~G~r~l~~La~~s 331 (340)
||+ ...|..+.++|.+..
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHH
Confidence 343 356999999998654
No 97
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.17 E-value=6.1e-06 Score=67.43 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=58.7
Q ss_pred HHHHhhcccCeEEEc-----cCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491 244 SLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 318 (340)
Q Consensus 244 ~la~~L~~~g~~~Yg-----A~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y 318 (340)
.+.+.+++..+++|. +||||+|++.|++|.+. .....++|...+ .. -+..+.+..|-+.+|..+|||+..
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-~i~~~~~di~~~---~~-~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC-GVPFAYVNVLED---PE-IRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc-CCCEEEEECCCC---HH-HHHHHHHHhCCCCCCEEEECCEEE
Confidence 456677888888884 39999999999999774 222334555433 11 245666667889999999999988
Q ss_pred eCCCCHHHHHH
Q 019491 319 SGEQDLSDLAK 329 (340)
Q Consensus 319 ~G~r~l~~La~ 329 (340)
-|-.++.+|.+
T Consensus 79 GG~ddl~~l~~ 89 (97)
T TIGR00365 79 GGCDIIMEMYQ 89 (97)
T ss_pred eChHHHHHHHH
Confidence 88887777654
No 98
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.14 E-value=1.1e-05 Score=84.03 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=53.4
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhh----ccCceeECCCCCC----CC------------------ChhhHhhhhhCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGY----RK------------------GTKIAKACSDAK 304 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~----~~l~yVeC~~~g~----~~------------------~~k~~~lC~~~~ 304 (340)
+.-++.|+|.|||+|+++.|.+.+.+. +.+..|-...++. +. -.+..++.++++
T Consensus 57 KpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fg 136 (521)
T PRK14018 57 KPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLN 136 (521)
T ss_pred CEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcC
Confidence 344778889999999999988765421 1222211110000 00 001246788999
Q ss_pred CcccceeE-E--CCE---EeeCCCCHHHHHHHhC
Q 019491 305 IEGFPTWV-I--NGQ---VLSGEQDLSDLAKASG 332 (340)
Q Consensus 305 I~GyPTw~-i--nG~---~y~G~r~l~~La~~sg 332 (340)
|+++||.. | ||+ ++.|..+.++|.++..
T Consensus 137 V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 137 ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999985 4 676 5899999999988766
No 99
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.13 E-value=7.1e-06 Score=70.27 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=49.1
Q ss_pred chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhh-----ccCceeECCCCCCCCChh--hHhhhh-hCCCcccc
Q 019491 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-----KQLNYVECFPDGYRKGTK--IAKACS-DAKIEGFP 309 (340)
Q Consensus 239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~-----~~l~yVeC~~~g~~~~~k--~~~lC~-~~~I~GyP 309 (340)
++.+++.|+.-++.=+..|+|.||+.|+.+++ .|.+... +.+-.|.-+.+. +++.. ..++.+ .+|+.|+|
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-RPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-CcHHHHHHHHHHHHhcCCCCCC
Confidence 45677888888888888999999999999975 6765321 223344444433 22110 011111 35999999
Q ss_pred eeEE---CCE
Q 019491 310 TWVI---NGQ 316 (340)
Q Consensus 310 Tw~i---nG~ 316 (340)
|+++ +|+
T Consensus 83 t~vfl~~~G~ 92 (124)
T cd02955 83 LNVFLTPDLK 92 (124)
T ss_pred EEEEECCCCC
Confidence 9888 676
No 100
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9.6e-06 Score=64.17 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=53.4
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCCCCCChhhHhhhhhC-CCcccceeEECCEEeeCCCCHHHHHH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g~~~~~k~~~lC~~~-~I~GyPTw~inG~~y~G~r~l~~La~ 329 (340)
.+.+|.-+|||+|++.|+++.+. .++| |+.+.+. .+..++.-++. |.+.+|..+|||+..-|..++++|.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~---g~~~~~i~~~~~~---~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRK---GVDYEEIDVDDDE---PEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHc---CCCcEEEEecCCc---HHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 36799999999999999998863 4554 4444332 11223444444 89999999999998888889999876
Q ss_pred Hh
Q 019491 330 AS 331 (340)
Q Consensus 330 ~s 331 (340)
.-
T Consensus 76 ~~ 77 (80)
T COG0695 76 KG 77 (80)
T ss_pred hc
Confidence 43
No 101
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.12 E-value=4.4e-05 Score=68.55 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=50.8
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCC-------C--------hhhHhhhhhCCCcccce-eE
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRK-------G--------TKIAKACSDAKIEGFPT-WV 312 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~-------~--------~k~~~lC~~~~I~GyPT-w~ 312 (340)
+.-++.|+|.|||+|+++.+.+.+-+.+.+. .|+-+.+...- + .+..++.+++||.++|| .+
T Consensus 69 k~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~v 148 (185)
T PRK15412 69 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFL 148 (185)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEE
Confidence 3446788899999999999887664322332 23321110000 0 00124667899999995 55
Q ss_pred E--CCE---EeeCCCCHHHHHHHh
Q 019491 313 I--NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 313 i--nG~---~y~G~r~l~~La~~s 331 (340)
| ||+ ++.|..+.++|.+..
T Consensus 149 id~~G~i~~~~~G~~~~~~l~~~i 172 (185)
T PRK15412 149 IDGNGIIRYRHAGDLNPRVWESEI 172 (185)
T ss_pred ECCCceEEEEEecCCCHHHHHHHH
Confidence 5 675 689999888876653
No 102
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.11 E-value=2.3e-05 Score=69.46 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=50.0
Q ss_pred ccCeEEEccCCCHHHHHHHHHHhHHhhccCce-------------------------eECCCCCCCCChhhHhhhhhCCC
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY-------------------------VECFPDGYRKGTKIAKACSDAKI 305 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y-------------------------VeC~~~g~~~~~k~~~lC~~~~I 305 (340)
+.=+.+|+|.|||+|+++.+.+.+-+.+.+.. +.++++ .++.+++++
T Consensus 64 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~--------~~~~~~~~v 135 (173)
T TIGR00385 64 KPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN--------GKLGLDLGV 135 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC--------CchHHhcCC
Confidence 44466888999999999988775533222221 222222 256778999
Q ss_pred cccce-eEE--CCE---EeeCCCCHHHHHHHh
Q 019491 306 EGFPT-WVI--NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 306 ~GyPT-w~i--nG~---~y~G~r~l~~La~~s 331 (340)
.++|| ..| ||+ ++.|..+.++|.++.
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence 99995 556 677 578999988887754
No 103
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.10 E-value=1.5e-05 Score=70.45 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc-c--CceeECCCCCCC--CCh--hhHhhh-hhC---CCcccceeEE---CC
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPDGYR--KGT--KIAKAC-SDA---KIEGFPTWVI---NG 315 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~--l~yVeC~~~g~~--~~~--k~~~lC-~~~---~I~GyPTw~i---nG 315 (340)
.+..++.|+|+|||+|++..|.+.+-+.+ . +-.|+.+.+... +.. ...+.- +.+ +|+++||..+ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 44458899999999999999988764322 1 224555432100 000 001222 223 8999999765 44
Q ss_pred E----EeeCCCCHHHHHHHh
Q 019491 316 Q----VLSGEQDLSDLAKAS 331 (340)
Q Consensus 316 ~----~y~G~r~l~~La~~s 331 (340)
+ ++.|..+.++|.+..
T Consensus 130 ~~i~~~~~G~~s~~~l~~~I 149 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANRM 149 (153)
T ss_pred CEEEEEeecccCHHHHHHHH
Confidence 3 478999999987653
No 104
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.10 E-value=6.6e-06 Score=62.53 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=50.1
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 331 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s 331 (340)
.+++|..+|||+|++.|+++.+. ......+|.+.+. . ...+=+..|...+|..++||+..-| .++|.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg---~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGG---SDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeC---HHHHHHHh
Confidence 37899999999999999999874 3334567776542 1 1233344589999999999987765 56666553
No 105
>smart00594 UAS UAS domain.
Probab=98.07 E-value=1.8e-05 Score=66.68 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=70.2
Q ss_pred cccccCCCchhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhcc-C--cee--ECCCCCCCCChhhHhhhhhCC
Q 019491 231 ETEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 231 ~~~itt~S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~~-l--~yV--eC~~~g~~~~~k~~~lC~~~~ 304 (340)
+|.....|=..+++.|++-.+.-++++.++||+.|+++.. .|..+..++ + +|| -++.+. .. ..+++..++
T Consensus 8 ~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~-~e---g~~l~~~~~ 83 (122)
T smart00594 8 GPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDT-SE---GQRVSQFYK 83 (122)
T ss_pred CCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCC-hh---HHHHHHhcC
Confidence 3455666677788888888888899999999999999865 676654321 2 232 233322 11 368999999
Q ss_pred CcccceeEE---CC-E-------EeeCCCCHHHHHHHh
Q 019491 305 IEGFPTWVI---NG-Q-------VLSGEQDLSDLAKAS 331 (340)
Q Consensus 305 I~GyPTw~i---nG-~-------~y~G~r~l~~La~~s 331 (340)
+++|||+.+ +| + +++|..+.++|.+..
T Consensus 84 ~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 84 LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999887 44 2 689999999998753
No 106
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.07 E-value=1.1e-05 Score=66.18 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCce--eECCCCC----------------CCCChhhHhhhhhCC
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDG----------------YRKGTKIAKACSDAK 304 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~y--VeC~~~g----------------~~~~~k~~~lC~~~~ 304 (340)
++++..-.+.-+..|+++|||+|+.+.+.+.+.+ +++.. |..+.+. .-.+ +..++++.++
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND-PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC-CCcHHHHhCC
Confidence 4444444455677888999999999988776532 22221 2111110 0000 1247899999
Q ss_pred CcccceeEE---CCE--EeeCCCCHHHHHHH
Q 019491 305 IEGFPTWVI---NGQ--VLSGEQDLSDLAKA 330 (340)
Q Consensus 305 I~GyPTw~i---nG~--~y~G~r~l~~La~~ 330 (340)
|.+.||..+ ||. ++.|..+.++|.+.
T Consensus 91 i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 999999887 454 58899999999764
No 107
>PRK10638 glutaredoxin 3; Provisional
Probab=98.06 E-value=8.3e-06 Score=63.96 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=53.3
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 329 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~ 329 (340)
.+++|+.+|||+|++.+.++.+. ......+|.+.+. . .+.++-+..|...+|+.++||+..-|-.++.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~--~--~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDA--A--KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCH--H--HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 47899999999999999999874 3334467776542 1 13455666788999999999998887766655543
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.04 E-value=2.1e-05 Score=62.29 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=52.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 331 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s 331 (340)
+++|..+|||+|++.|+.+.+. ...+.++|.+.+. +..+..++.|.+..|+.+++++... ..+.++|.++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-gI~~~~idi~~~~-----~~~~~~~~~g~~~vPvv~i~~~~~~-Gf~~~~l~~~~ 73 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-GFDFEMINVDRVP-----EAAETLRAQGFRQLPVVIAGDLSWS-GFRPDMINRLH 73 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCCCcCEEEECCEEEe-cCCHHHHHHHH
Confidence 6899999999999999999763 2233456666442 1234456678899999999987666 56678888765
No 109
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.03 E-value=8.2e-06 Score=65.41 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=58.3
Q ss_pred HhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCC
Q 019491 247 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 321 (340)
Q Consensus 247 ~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~ 321 (340)
+.+++..+++|.- ||||+|++.|.++.+. .....++|...+. . -+..+.+..|-+.+|+.+|||+.+-|-
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~---~-~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE---E-VRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH---H-HHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 4566778888843 7999999999999874 3345567765442 1 245666667889999999999998888
Q ss_pred CCHHHHHH
Q 019491 322 QDLSDLAK 329 (340)
Q Consensus 322 r~l~~La~ 329 (340)
.++.+|.+
T Consensus 78 ~~l~~l~~ 85 (90)
T cd03028 78 DIVKEMHE 85 (90)
T ss_pred HHHHHHHH
Confidence 88777754
No 110
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.02 E-value=1.1e-05 Score=62.59 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=48.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCc-eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE-EeeC-CCCHHHHHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA 330 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~-yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~-~y~G-~r~l~~La~~ 330 (340)
++.| .++||+|.++.+...+.+. ..+ .+|+.... + +.++ .++||.+.||..|||+ ++.| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~~-~~~i~~ei~~~~-~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAAE-ELGIEVEIIDIE-D----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHHH-HTTEEEEEEETT-T----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHHHH-hcCCeEEEEEcc-C----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 4564 7779999999998877432 222 23443221 1 3455 9999999999999999 6999 8899999887
Q ss_pred h
Q 019491 331 S 331 (340)
Q Consensus 331 s 331 (340)
.
T Consensus 75 l 75 (76)
T PF13192_consen 75 L 75 (76)
T ss_dssp H
T ss_pred h
Confidence 4
No 111
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.99 E-value=1.8e-05 Score=72.43 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeC------
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG------ 320 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G------ 320 (340)
++.|+|+||++|+.+.+.|.+.|.+ .+.+|..+.+ +...+++|++.||..+ ||+ ++.|
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 5678899999999999999997754 3456665533 2246799999999887 887 4555
Q ss_pred -CCCHHHHHHHh
Q 019491 321 -EQDLSDLAKAS 331 (340)
Q Consensus 321 -~r~l~~La~~s 331 (340)
..+.++|..+.
T Consensus 177 ~~~~~~~lE~~L 188 (192)
T cd02988 177 MNTTMEDLEWLL 188 (192)
T ss_pred CCCCHHHHHHHH
Confidence 34556666554
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.97 E-value=1.4e-05 Score=67.94 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=43.6
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhc--c-Cc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVK--Q-LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 316 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~--~-l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~ 316 (340)
-++-|+|.|||.|+.+.|.|.+.|.+ + .. .||.+. .++++++++|+.-||..+ ||+
T Consensus 17 VVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 17 LVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCceeCcEEEEEECCc
Confidence 36689999999999999999987632 3 33 455553 358999999999999776 775
No 113
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.95 E-value=1.6e-05 Score=62.20 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--cc--CceeECCCC-CCCC---------C-----hhhHhhhh
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQ--LNYVECFPD-GYRK---------G-----TKIAKACS 301 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~--l~yVeC~~~-g~~~---------~-----~k~~~lC~ 301 (340)
+.+++...+.-+.+|++.|||+|+++.+.+.+.. . .. +-.|+++++ ...- . .+..++.+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK 91 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence 4444433556688999999999999988776642 1 12 336777653 0000 0 00147789
Q ss_pred hCCCcccceeEE---CCE
Q 019491 302 DAKIEGFPTWVI---NGQ 316 (340)
Q Consensus 302 ~~~I~GyPTw~i---nG~ 316 (340)
++++.++|++.+ +|+
T Consensus 92 ~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred hcCcCccceEEEECCCCc
Confidence 999999999876 565
No 114
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.88 E-value=5.3e-05 Score=62.51 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=64.2
Q ss_pred hhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhhc-cC--ce--eECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491 240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 313 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~~-~l--~y--VeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i 313 (340)
+.+++.|++-++.=++++.++||+.|++++. .|..+..+ .+ .| +..+.+. . ...++...+++++|||+.+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~--e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--S--EGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--c--cHHHHHHHhCccCCCeEEE
Confidence 5677888888888899999999999999965 67665432 12 23 3333322 1 1358899999999999876
Q ss_pred ----CCE---EeeCCCCHHHHHHHh
Q 019491 314 ----NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 314 ----nG~---~y~G~r~l~~La~~s 331 (340)
+|+ +++|..+.+++.+..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHH
Confidence 465 689999999987654
No 115
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.87 E-value=2e-05 Score=65.93 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=47.9
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--hc----c--CceeECCCCCCC----------------CChhhH
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--VK----Q--LNYVECFPDGYR----------------KGTKIA 297 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~~----~--l~yVeC~~~g~~----------------~~~k~~ 297 (340)
.+.++..-.+.-+++|+|+|||+|+++.+.+.+.. .+ . +-.|..+.+... ......
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 34555555566688999999999999988876421 11 1 335555533100 001124
Q ss_pred hhhhhCCCcccceeEE---CCE
Q 019491 298 KACSDAKIEGFPTWVI---NGQ 316 (340)
Q Consensus 298 ~lC~~~~I~GyPTw~i---nG~ 316 (340)
.++++++|+++||..+ ||+
T Consensus 90 ~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHcCCCCCCEEEEECCCCC
Confidence 7888999999999776 665
No 116
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.78 E-value=0.00012 Score=61.49 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=30.8
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 331 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s 331 (340)
.+++++.||+|.||+++||+.+.|..+.++|.+..
T Consensus 119 ~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFIIGDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence 35567889999999999999999999999998764
No 117
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.78 E-value=3.9e-05 Score=59.88 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.2
Q ss_pred hhHHHHHHhhcccCeEEEccCCCHHHHHHHHHH
Q 019491 240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF 272 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf 272 (340)
+.+.+.|+.-++.-+++|+|.||++|+.+++.+
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 456777888888889999999999999998865
No 118
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.77 E-value=5.1e-05 Score=51.73 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=37.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHH--hhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSE--AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~--A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in 314 (340)
+.+|++.|||||+++++.+.+. ....+. .++|+.+. + ..+...+.++.++|+.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--A---LEKELKRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--H---HhhHHHhCCCccccEEEEE
Confidence 3678899999999999988863 123344 55555432 1 1122347899999999883
No 119
>PTZ00062 glutaredoxin; Provisional
Probab=97.74 E-value=0.00011 Score=68.05 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=46.6
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCHHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD 326 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~~ 326 (340)
+.+|.|+|||.|+.+++.+.+.+. ..+.++..+.+ ++|.+.||.++ ||+ ++.|.. +.+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------------~~V~~vPtfv~~~~g~~i~r~~G~~-~~~ 85 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------------DANNEYGVFEFYQNSQLINSLEGCN-TST 85 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------------cCcccceEEEEEECCEEEeeeeCCC-HHH
Confidence 557889999999999999988653 34666666422 89999999887 887 567764 566
Q ss_pred HHHH
Q 019491 327 LAKA 330 (340)
Q Consensus 327 La~~ 330 (340)
|...
T Consensus 86 ~~~~ 89 (204)
T PTZ00062 86 LVSF 89 (204)
T ss_pred HHHH
Confidence 6544
No 120
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.73 E-value=9.1e-05 Score=77.26 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=66.0
Q ss_pred hhHHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491 240 PFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314 (340)
Q Consensus 240 ~~~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in 314 (340)
+..++..+.|+ ...+++|..++||+|.+..+...+-|.. .|. -||.+. ++++.++++|.+.|+.+||
T Consensus 465 ~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 465 EELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEEC
Confidence 44555556664 5579999999999999998888765433 232 455442 3688999999999999999
Q ss_pred CE-EeeCCCCHHHHHHHhC
Q 019491 315 GQ-VLSGEQDLSDLAKASG 332 (340)
Q Consensus 315 G~-~y~G~r~l~~La~~sg 332 (340)
|+ .+.|..+.+++.++.|
T Consensus 537 ~~~~~~G~~~~~~~~~~~~ 555 (555)
T TIGR03143 537 DQQVYFGKKTIEEMLELIG 555 (555)
T ss_pred CEEEEeeCCCHHHHHHhhC
Confidence 97 6999999999999876
No 121
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.72 E-value=6.7e-05 Score=63.27 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=48.2
Q ss_pred hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h-c---c--CceeECCCCCC-----------------CCChh
Q 019491 241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGY-----------------RKGTK 295 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-~---~--l~yVeC~~~g~-----------------~~~~k 295 (340)
..+.+++.-.+.=++.|+|+|||+|+++.+.+.+.+ . + . +-+|..+.+.. .....
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 445566555566678899999999999988776532 1 1 2 33566654310 00011
Q ss_pred hHhhhhhCCCcccceeEE---CCE
Q 019491 296 IAKACSDAKIEGFPTWVI---NGQ 316 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~i---nG~ 316 (340)
...+-+.++|.++||..+ ||+
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC
Confidence 235667799999999876 565
No 122
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.58 E-value=8.4e-05 Score=67.12 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.0
Q ss_pred hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHH
Q 019491 296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKA 330 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~ 330 (340)
..+++++.||+|.||+++ ||+.+.|..+.++|.++
T Consensus 161 ~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhh
Confidence 568899999999999999 79999999999999876
No 123
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.54 E-value=0.0025 Score=67.06 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=62.2
Q ss_pred hhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHh--hcc----CceeECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491 240 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA--VKQ----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 312 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A--~~~----l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~ 312 (340)
.-..++|+|=++.-+.=|||.||=.||+.|+ .|.+.. .+. +=.+|-+.| +.+..++=+++|+-|-||.+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~ 539 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYL 539 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEE
Confidence 3445566666556677788999999999987 575432 111 225677654 23468899999999999988
Q ss_pred E---CCE---EeeCCCCHHHHHHHh
Q 019491 313 I---NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 313 i---nG~---~y~G~r~l~~La~~s 331 (340)
+ +|+ ...|..+-+.+.++.
T Consensus 540 ff~~~g~e~~~l~gf~~a~~~~~~l 564 (569)
T COG4232 540 FFGPQGSEPEILTGFLTADAFLEHL 564 (569)
T ss_pred EECCCCCcCcCCcceecHHHHHHHH
Confidence 7 454 478888888877764
No 124
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.52 E-value=0.00038 Score=63.57 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=48.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc-cCc--eeECCCCCCC-----CChhhHhhhhhCCC--cccceeEE---CCE----
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR-----KGTKIAKACSDAKI--EGFPTWVI---NGQ---- 316 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~-~l~--yVeC~~~g~~-----~~~k~~~lC~~~~I--~GyPTw~i---nG~---- 316 (340)
++.|+|.|||+|++..+.+.+-+.+ .+. -|..+.++.. -+.+...+-+.+++ .++||-++ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 8889999999999998877664322 222 2444322100 00012345667884 79999665 675
Q ss_pred EeeCCCCHHHHHHH
Q 019491 317 VLSGEQDLSDLAKA 330 (340)
Q Consensus 317 ~y~G~r~l~~La~~ 330 (340)
.+.|..+.++|.+.
T Consensus 153 ~~~G~~~~~~L~~~ 166 (181)
T PRK13728 153 LLQGATDAAGFMAR 166 (181)
T ss_pred EEECCCCHHHHHHH
Confidence 37899998888654
No 125
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.46 E-value=7e-05 Score=60.63 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHhh-cccCeEEEccCCCHHHHHHHHHHhHHh--h-ccCceeECCCCCCCCChhhHhhhhhCCCccccee
Q 019491 243 LSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEA--V-KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 311 (340)
Q Consensus 243 ~~la~~L-~~~g~~~YgA~WCpHC~~qk~lfgk~A--~-~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw 311 (340)
+.|+.+. .+.-+++|+++|||+|+++.+.+.+.+ . .++..|-..++. . .+..+..+++++.+||+.
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~-~--~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE-K--AEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC-H--HHHHHHHHHhCCCCCcEE
Confidence 3444443 344467888999999999988886632 1 223333322111 1 124566777777777765
No 126
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.00039 Score=71.75 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=68.9
Q ss_pred chhHHHHHHhhc-ccCeEEEccCCCHHHHHHHHHHhHHhhc--cC--ceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491 239 SPFALSLAKHLH-AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 313 (340)
Q Consensus 239 ~~~~~~la~~L~-~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l--~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i 313 (340)
++...+..+.|+ ...+++|..+.||||.+..+.+.+.|.. .| .-||... ++++..+++|.+.|+.++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEE
Confidence 355666667774 6679999999999999999998876543 23 2344432 468899999999999999
Q ss_pred CCE-EeeCCCCHHHHHHHhCCC
Q 019491 314 NGQ-VLSGEQDLSDLAKASGFP 334 (340)
Q Consensus 314 nG~-~y~G~r~l~~La~~sg~~ 334 (340)
||+ .++|..+.+++.+....+
T Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 176 NGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcEEEecCCCHHHHHHHHhcc
Confidence 986 699999999999987654
No 127
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00022 Score=68.23 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=46.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccC----ceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE---eeCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQL----NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV---LSGE 321 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l----~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~---y~G~ 321 (340)
++-|+|.||+.|++..|+|...+.++. -.||.+. .+.....+||+..||++. ||++ ++|.
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~--------c~~taa~~gV~amPTFiff~ng~kid~~qGA 93 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE--------CRGTAATNGVNAMPTFIFFRNGVKIDQIQGA 93 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH--------hhchhhhcCcccCceEEEEecCeEeeeecCC
Confidence 667889999999999999999876652 3566543 245567799999999887 8874 6665
No 128
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.43 E-value=3.7e-05 Score=72.66 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=56.7
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh------hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--EeeCCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA------VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQD 323 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A------~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~y~G~r~ 323 (340)
..||||||||.|++.++.|..-| ..+++|||.+.+. -+--.+=|...||.-- +|+ +|+|.|+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np--------gLsGRF~vtaLptIYHvkDGeFrrysgaRd 114 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP--------GLSGRFLVTALPTIYHVKDGEFRRYSGARD 114 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc--------ccceeeEEEecceEEEeeccccccccCccc
Confidence 66899999999999999987654 1346799998652 3333477888999664 886 8999999
Q ss_pred HHHHHHHhCCC
Q 019491 324 LSDLAKASGFP 334 (340)
Q Consensus 324 l~~La~~sg~~ 334 (340)
-+++..+.-++
T Consensus 115 k~dfisf~~~r 125 (248)
T KOG0913|consen 115 KNDFISFEEHR 125 (248)
T ss_pred chhHHHHHHhh
Confidence 99988776653
No 129
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.42 E-value=0.0004 Score=60.30 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=43.1
Q ss_pred chhHHHHHHhhcccCeEEEccCCCHHHHHHHHH-HhHHhhcc-C--cee--ECCCCCCCCChhhHhhhhhCCCcccceeE
Q 019491 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSEAVKQ-L--NYV--ECFPDGYRKGTKIAKACSDAKIEGFPTWV 312 (340)
Q Consensus 239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~l-fgk~A~~~-l--~yV--eC~~~g~~~~~k~~~lC~~~~I~GyPTw~ 312 (340)
=+.+++.|+.-.+.=+++|++.|||+|+++++. |.+...++ + .|| .-..|..+++ ....+ +++||.+
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~------~~~~g-~~vPtiv 84 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN------LSPDG-QYVPRIM 84 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC------cCccC-cccCeEE
Confidence 356777888888888889999999999999874 65543221 2 233 3332221111 11234 7999988
Q ss_pred E
Q 019491 313 I 313 (340)
Q Consensus 313 i 313 (340)
+
T Consensus 85 F 85 (130)
T cd02960 85 F 85 (130)
T ss_pred E
Confidence 7
No 130
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00062 Score=57.02 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=61.4
Q ss_pred HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCH
Q 019491 245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 324 (340)
Q Consensus 245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l 324 (340)
.-+-+.+..+++|.-.|||.|++.|.+|.+. ......||-|.+.+..+ -|+.+-+-.|-+.+|..+|||+-.-|..++
T Consensus 7 v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~e-iq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl 84 (104)
T KOG1752|consen 7 VRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGSE-IQKALKKLTGQRTVPNVFIGGKFIGGASDL 84 (104)
T ss_pred HHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcHH-HHHHHHHhcCCCCCCEEEECCEEEcCHHHH
Confidence 4456677789999999999999999999883 22344678876643332 255566667788999999999988777777
Q ss_pred HHHH
Q 019491 325 SDLA 328 (340)
Q Consensus 325 ~~La 328 (340)
.+|.
T Consensus 85 ~~lh 88 (104)
T KOG1752|consen 85 MALH 88 (104)
T ss_pred HHHH
Confidence 7664
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.32 E-value=0.00062 Score=57.93 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=56.0
Q ss_pred HHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491 244 SLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 318 (340)
Q Consensus 244 ~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y 318 (340)
.+.+.+++..+++|-. ||||+|++.|.+|.+. .....++|-+.+. + -+..+=+..|-+.+|-.+|||+-.
T Consensus 7 ~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~---~-~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 7 KIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNP---D-IRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCH---H-HHHHHHHHhCCCCCCeEEECCEEE
Confidence 4556677777888855 6999999999999874 3345567776442 1 133444446788899999999987
Q ss_pred eCCCCHHHHH
Q 019491 319 SGEQDLSDLA 328 (340)
Q Consensus 319 ~G~r~l~~La 328 (340)
-|-.++.+|.
T Consensus 82 GG~ddl~~l~ 91 (115)
T PRK10824 82 GGCDIVIEMY 91 (115)
T ss_pred cChHHHHHHH
Confidence 7776666554
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.32 E-value=0.0004 Score=70.34 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=48.6
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhh------hCCCcccceeEECCEEeeCCCCHHH
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACS------DAKIEGFPTWVINGQVLSGEQDLSD 326 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~------~~~I~GyPTw~inG~~y~G~r~l~~ 326 (340)
.+++|..+|||||++.|.++.+. .....+||.+.+.... ...+... ..|.+..|+.+|||+..-|-.++.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~-gi~~~~idi~~~~~~~--~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN-DIPFTQISLDDDVKRA--EFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC-CCCeEEEECCCChhHH--HHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 37899999999999999999985 3334467776442110 0011122 1478899999999988877766544
No 133
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.24 E-value=0.00083 Score=51.32 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=45.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh---hc--cCceeECCCCCCC---C--------------C-------hhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA---VK--QLNYVECFPDGYR---K--------------G-------TKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A---~~--~l~yVeC~~~g~~---~--------------~-------~k~~~lC~~~~ 304 (340)
+.+|..|.||||++..+.+.+.. .. ++.++.....+.+ . . .+..++.++.|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35788999999999998887641 11 2345555433321 0 0 01235567789
Q ss_pred CcccceeEECCEEeeCC
Q 019491 305 IEGFPTWVINGQVLSGE 321 (340)
Q Consensus 305 I~GyPTw~inG~~y~G~ 321 (340)
|+|.||+++||++|.|.
T Consensus 81 ~~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 81 VTGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCCEEEECCEEcCCC
Confidence 99999999999877664
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=97.23 E-value=0.00084 Score=62.29 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=57.6
Q ss_pred hHHHHHHhhcccCeEEEcc-----CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC
Q 019491 241 FALSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 315 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~YgA-----~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG 315 (340)
....+.+.+++..+++|-- ||||+|++.|.++.+. ......+|-..|. . -+..+=+..|-..+|...|||
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-~i~y~~~DI~~d~--~--~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-GVKYETYNIFEDP--D--LREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-CCCEEEEEcCCCH--H--HHHHHHHHhCCCCCCeEEECC
Confidence 4455677777778888833 6999999999999874 2223345554331 1 123333445778899999999
Q ss_pred EEeeCCCCHHHHHH
Q 019491 316 QVLSGEQDLSDLAK 329 (340)
Q Consensus 316 ~~y~G~r~l~~La~ 329 (340)
+.+-|-.++.+|.+
T Consensus 177 ~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 177 ELIGGHDIIKELYE 190 (204)
T ss_pred EEEcChHHHHHHHH
Confidence 98888877777654
No 135
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.20 E-value=0.0016 Score=58.75 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=46.3
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHHhhc-c--CceeECCCC----------CCC--CChhhHhhhhhCCCcccceeEE---
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSEAVK-Q--LNYVECFPD----------GYR--KGTKIAKACSDAKIEGFPTWVI--- 313 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~A~~-~--l~yVeC~~~----------g~~--~~~k~~~lC~~~~I~GyPTw~i--- 313 (340)
.-+.+|+|+|||+|+++.+.+.+...+ . +-.|..+.. +.+ .-....++.+++++.+.|+-.+
T Consensus 76 ~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~ 155 (189)
T TIGR02661 76 PTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQ 155 (189)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECC
Confidence 346688899999999998877653211 1 223331100 000 0000246778899999998655
Q ss_pred CCE-EeeCC-CCHHHHHHHh
Q 019491 314 NGQ-VLSGE-QDLSDLAKAS 331 (340)
Q Consensus 314 nG~-~y~G~-r~l~~La~~s 331 (340)
+|+ ++.|. .+.+++.++.
T Consensus 156 ~G~I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 156 DGKIRAKGLTNTREHLESLL 175 (189)
T ss_pred CCeEEEccCCCCHHHHHHHH
Confidence 576 56665 3445555554
No 136
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.12 E-value=0.0008 Score=52.88 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=37.3
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHh--hc---cC--ceeECCCCCC--------C---------CChhhHhhhhhCCCccc
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGY--------R---------KGTKIAKACSDAKIEGF 308 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A--~~---~l--~yVeC~~~g~--------~---------~~~k~~~lC~~~~I~Gy 308 (340)
-+.+|+|+||++|++.-+.+.+.. .+ .+ -+|.++.+.. + ....+.++-+.++|+++
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~i 83 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGI 83 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcC
Confidence 367899999999999977654421 12 22 2455543300 0 00124567888899999
Q ss_pred ceeEE---CCE
Q 019491 309 PTWVI---NGQ 316 (340)
Q Consensus 309 PTw~i---nG~ 316 (340)
||..+ ||+
T Consensus 84 P~~~lld~~G~ 94 (95)
T PF13905_consen 84 PTLVLLDPDGK 94 (95)
T ss_dssp SEEEEEETTSB
T ss_pred CEEEEECCCCC
Confidence 99877 564
No 137
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.08 E-value=0.0016 Score=73.25 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=52.9
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECC-----CCCCCCC----------------hhhHhhhhhCC
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECF-----PDGYRKG----------------TKIAKACSDAK 304 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~-----~~g~~~~----------------~k~~~lC~~~~ 304 (340)
.+.-++.|+|.|||+|++..|.+.+.+.+ .+..|.+. .+..... ....++-++++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 34457789999999999999888664221 13334331 1100000 01235667899
Q ss_pred CcccceeEE---CCE---EeeCCCCHHHHHHHh
Q 019491 305 IEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 305 I~GyPTw~i---nG~---~y~G~r~l~~La~~s 331 (340)
|+++||.++ ||+ ++.|+...++|.++.
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 999999776 676 689998878776654
No 138
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.02 E-value=0.0019 Score=66.83 Aligned_cols=86 Identities=17% Similarity=0.311 Sum_probs=66.7
Q ss_pred hhHHHHHHhh-cccCeEEEccCCCHHHHHHHHHHhHHhhc--cCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491 240 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314 (340)
Q Consensus 240 ~~~~~la~~L-~~~g~~~YgA~WCpHC~~qk~lfgk~A~~--~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in 314 (340)
+..++..+.| +...+++|..+-||||.+..+.+.+.|.. .|. -||... ++++..+++|.+.|+..||
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL--------FQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh--------CHHHHHhcCCcccCEEEEC
Confidence 4566666676 45679999999999999999998776543 232 333332 4688999999999999999
Q ss_pred CE-EeeCCCCHHHHHHHhCC
Q 019491 315 GQ-VLSGEQDLSDLAKASGF 333 (340)
Q Consensus 315 G~-~y~G~r~l~~La~~sg~ 333 (340)
|+ .++|..+.+++.+..+-
T Consensus 178 ~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 178 GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred CcEEEecCCCHHHHHHHHhh
Confidence 86 68999999999877653
No 139
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.97 E-value=0.0018 Score=60.82 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.2
Q ss_pred hHhhhhhCCCcccceeEE-CCEEeeCCCCHHHHHHHhC
Q 019491 296 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG 332 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~i-nG~~y~G~r~l~~La~~sg 332 (340)
+.+++++.||+|.||+++ ||+...|.++.++|.++..
T Consensus 191 ~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 191 HYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred hHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 578899999999999999 9999999999999998865
No 140
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.85 E-value=0.0026 Score=48.28 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=46.7
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCC--CcccceeEE--CCE---EeeC--C
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG--E 321 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~--I~GyPTw~i--nG~---~y~G--~ 321 (340)
++.|+++|||+|++.++.+.+.+.+ .+..+.++.... ..+....++ +..+|+..+ +++ .+.| .
T Consensus 36 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 36 LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred EEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 3344599999999999988775422 244555543211 246677788 999999875 554 3444 5
Q ss_pred CCHHHHHHHhC
Q 019491 322 QDLSDLAKASG 332 (340)
Q Consensus 322 r~l~~La~~sg 332 (340)
...+.+....+
T Consensus 111 ~~~~~~~~~~~ 121 (127)
T COG0526 111 LPKEALIDALG 121 (127)
T ss_pred CCHHHHHHHhc
Confidence 55555554443
No 141
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.74 E-value=0.0072 Score=56.33 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=58.6
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh---hccCceeECCCCC---CCCChhhHhhhhhCCCcccceeEE---
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA---VKQLNYVECFPDG---YRKGTKIAKACSDAKIEGFPTWVI--- 313 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A---~~~l~yVeC~~~g---~~~~~k~~~lC~~~~I~GyPTw~i--- 313 (340)
..+.+.=++.|+.+|+...||+|++|.+....-+ .-.+-+|..|-.+ ..+......+.++.||+-+|+..+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 3344444667899999999999999998765432 2234456654210 000001246788899999999887
Q ss_pred CC-E---EeeCCCCHHHHHHH
Q 019491 314 NG-Q---VLSGEQDLSDLAKA 330 (340)
Q Consensus 314 nG-~---~y~G~r~l~~La~~ 330 (340)
++ + .-.|..++++|.+-
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHh
Confidence 44 4 36899999999863
No 142
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.64 E-value=0.0015 Score=57.53 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491 245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk 274 (340)
++..=.+.-+..|+|.|||-|++..|.+.+
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHH
Confidence 344434455778999999999999887644
No 143
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.62 E-value=0.0042 Score=52.57 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=49.9
Q ss_pred hhHHHHHHhhcccCeEEEccC-CCHHHHHHHHHHhHHh----hccCceeECCCCCCCCC---------------hhhHhh
Q 019491 240 PFALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGSEA----VKQLNYVECFPDGYRKG---------------TKIAKA 299 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~-WCpHC~~qk~lfgk~A----~~~l~yVeC~~~g~~~~---------------~k~~~l 299 (340)
...+.|++.-.+.-++.|++. |||+|+++.+.+.+.+ .+.+..|-+..+....- ....++
T Consensus 18 g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 97 (146)
T PF08534_consen 18 GKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGAL 97 (146)
T ss_dssp SEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHH
T ss_pred CCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHH
Confidence 344556663344446788888 9999999988765532 12243333332211000 002367
Q ss_pred hhhCCCc---------ccceeEE---CCE---EeeCCCC
Q 019491 300 CSDAKIE---------GFPTWVI---NGQ---VLSGEQD 323 (340)
Q Consensus 300 C~~~~I~---------GyPTw~i---nG~---~y~G~r~ 323 (340)
.++.+++ ++|++.+ ||+ +..|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 7788988 9999876 786 4566665
No 144
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.58 E-value=0.0051 Score=51.25 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk 274 (340)
+.++.+-.+.-+.+|+|.|||.|+++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 45555544555778889999999999877655
No 145
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.31 E-value=0.0065 Score=53.72 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=48.1
Q ss_pred eEEEccC------CCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC----cccceeEECCEEeeCCCC
Q 019491 254 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD 323 (340)
Q Consensus 254 ~~~YgA~------WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I----~GyPTw~inG~~y~G~r~ 323 (340)
+++|..+ +||+|++.|++|.+. ...+.++|.+.+... +.++-+..+- ...|..+|||+-.-|..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~~----~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSGF----REELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHHH----HHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 6799999 999999999999874 223445665543211 2233333343 689999999987777777
Q ss_pred HHHHHH
Q 019491 324 LSDLAK 329 (340)
Q Consensus 324 l~~La~ 329 (340)
+.+|.+
T Consensus 77 l~~L~e 82 (147)
T cd03031 77 VLRLNE 82 (147)
T ss_pred HHHHHH
Confidence 666543
No 146
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.92 E-value=0.017 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHH
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 275 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~ 275 (340)
.++|+++-.+.=+.+|+|.||| |.++.+.+.+.
T Consensus 14 ~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 14 PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHH
Confidence 3566665555557789999999 99988777653
No 147
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.78 E-value=0.021 Score=49.81 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=37.3
Q ss_pred CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCHHHHHHHhC
Q 019491 280 LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSDLAKASG 332 (340)
Q Consensus 280 l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~~La~~sg 332 (340)
+..||.+.+ .++.+++||+++||+.+ ||+ ++.|.++-++|.++..
T Consensus 72 ~akVDiD~~--------~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~ 121 (132)
T PRK11509 72 VAIADLEQS--------EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121 (132)
T ss_pred EEEEECCCC--------HHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHH
Confidence 456777643 59999999999999887 998 6899999999987654
No 148
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.36 E-value=0.039 Score=50.52 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=24.4
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk 274 (340)
.+.|++.-.+.-++.|.|.|||.|++..+.+.+
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHH
Confidence 456666545555778999999999987776654
No 149
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.26 E-value=0.015 Score=52.11 Aligned_cols=69 Identities=22% Similarity=0.450 Sum_probs=42.5
Q ss_pred hhc-ccCeEEEccCCCHHHHHH----HHHHhHHhhc----cCceeECCCCCCC-----------------CChhhHhhhh
Q 019491 248 HLH-AIGAKMYGAFWCSHCLEQ----KQMFGSEAVK----QLNYVECFPDGYR-----------------KGTKIAKACS 301 (340)
Q Consensus 248 ~L~-~~g~~~YgA~WCpHC~~q----k~lfgk~A~~----~l~yVeC~~~g~~-----------------~~~k~~~lC~ 301 (340)
||. ++...+|+|.|||.|++. |++|.+-... .|-+|.=+.++.. .+.+.+++++
T Consensus 30 ~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 30 ALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred hhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 443 455668999999999987 5555543211 1223332222100 0113568999
Q ss_pred hCCCcccceeEE---CCE
Q 019491 302 DAKIEGFPTWVI---NGQ 316 (340)
Q Consensus 302 ~~~I~GyPTw~i---nG~ 316 (340)
+++|.+.|++++ ||+
T Consensus 110 ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGT 127 (157)
T ss_pred hcccCcCceeEEecCCCC
Confidence 999999999998 674
No 150
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.16 E-value=0.023 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=31.1
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHh
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 331 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~s 331 (340)
.+.+++.||+|.||.+|||+.+.|..++++|.++.
T Consensus 126 ~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 46678999999999999999999999999999875
No 151
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.88 E-value=0.081 Score=50.22 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=25.6
Q ss_pred hHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491 241 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk 274 (340)
..+.|++.-.+.-++.|+|.|||.|.++.+.+.+
T Consensus 90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 3557777655566778889999999988776654
No 152
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.86 E-value=0.09 Score=39.46 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=39.0
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEE
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 317 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~ 317 (340)
++|+.+|||+|++.+-.+.+. ......++.+... + ..++-+...-...|+++.+ |+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcE
Confidence 589999999999999887753 3345556665432 1 1244344567789999995 764
No 153
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.048 Score=49.30 Aligned_cols=80 Identities=19% Similarity=0.347 Sum_probs=52.5
Q ss_pred eEEEccCCCHHHHHHHH-HHhHHh----hcc-Cc--eeECC---CCCCCCCh-----hhHhhhhhCCCcccceeEE---C
Q 019491 254 AKMYGAFWCSHCLEQKQ-MFGSEA----VKQ-LN--YVECF---PDGYRKGT-----KIAKACSDAKIEGFPTWVI---N 314 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~-lfgk~A----~~~-l~--yVeC~---~~g~~~~~-----k~~~lC~~~~I~GyPTw~i---n 314 (340)
+.||+.+.|+.|.++|. +|.+.. .+. +. +++-. +.-.+.|. +..++.+.++|+++||+++ +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 66999999999999986 554432 211 22 12211 11111111 2459999999999999998 4
Q ss_pred CE---EeeCCCCHHHHHHHhCC
Q 019491 315 GQ---VLSGEQDLSDLAKASGF 333 (340)
Q Consensus 315 G~---~y~G~r~l~~La~~sg~ 333 (340)
|+ ..+|=...|+......|
T Consensus 126 Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 126 GKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred CCEEEecCCCCCHHHHHHHHHH
Confidence 55 47888888888776655
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=94.83 E-value=0.13 Score=43.40 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=58.5
Q ss_pred hhHHHHHHhhcccCeEEEccC----CCHHHHHHHHHHhHHhhc-cCc----eeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491 240 PFALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAVK-QLN----YVECFPDGYRKGTKIAKACSDAKIEGFPT 310 (340)
Q Consensus 240 ~~~~~la~~L~~~g~~~YgA~----WCpHC~~qk~lfgk~A~~-~l~----yVeC~~~g~~~~~k~~~lC~~~~I~GyPT 310 (340)
..+++.||+=.+.-+++++.+ ||.-|+ +.|..+... .|+ .+-++-++ .. -.+++...++++||+
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~-~e---g~~la~~l~~~~~P~ 79 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAK-PE---GYRVSQALRERTYPF 79 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCC-hH---HHHHHHHhCCCCCCE
Confidence 456677887777778888899 888884 455443321 111 23333322 11 368899999999999
Q ss_pred eEE----CCE-----EeeCCCCHHHHHHHhC
Q 019491 311 WVI----NGQ-----VLSGEQDLSDLAKASG 332 (340)
Q Consensus 311 w~i----nG~-----~y~G~r~l~~La~~sg 332 (340)
+.+ +++ +.+|..+.++|.+...
T Consensus 80 ~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 80 LAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred EEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 886 443 6999999999987653
No 155
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.79 E-value=0.077 Score=46.47 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=45.3
Q ss_pred HHHHHh-hcccCeEEEccCCCHHHHHHHHHHhHHh--h--ccCceeECCCCCC------CCC-----------------h
Q 019491 243 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGY------RKG-----------------T 294 (340)
Q Consensus 243 ~~la~~-L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~yVeC~~~g~------~~~-----------------~ 294 (340)
+.+... -.+.-+.+|++.|||+|.++.+.+.+.. . +.+..|-...|.. ... .
T Consensus 17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 455554 3345577889999999998877665532 1 1244333322210 000 0
Q ss_pred hhHhhhhhCCCcccceeEE---CCE-EeeC
Q 019491 295 KIAKACSDAKIEGFPTWVI---NGQ-VLSG 320 (340)
Q Consensus 295 k~~~lC~~~~I~GyPTw~i---nG~-~y~G 320 (340)
....+.+++||.+.|+..+ ||+ +|.|
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 1235677889999998776 666 4553
No 156
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=94.56 E-value=0.094 Score=48.09 Aligned_cols=87 Identities=11% Similarity=0.006 Sum_probs=55.9
Q ss_pred HHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhccCc--------eeECCCCCC-------------CCCh--------h
Q 019491 245 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLN--------YVECFPDGY-------------RKGT--------K 295 (340)
Q Consensus 245 la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--------yVeC~~~g~-------------~~~~--------k 295 (340)
.++-..+.-++-|.|-||+.|..-.|++.+-+.+.++ -|+-+.+.. ..+. +
T Consensus 54 ~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 54 SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred HHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 3444466678889999999999999988765433322 244322100 0000 0
Q ss_pred hHhhhhhCCCccccee--EE--CCE---EeeCCCCHHHHHHHh
Q 019491 296 IAKACSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS 331 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw--~i--nG~---~y~G~r~l~~La~~s 331 (340)
+...-.++|++++|+- +| +|+ ++.|..+.+++.++.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2345678999999665 55 676 799999999887754
No 157
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.56 E-value=0.1 Score=45.04 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=22.6
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHH
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF 272 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lf 272 (340)
.+.|+++-.+.-+++|.|.|||.|++..+.+
T Consensus 14 ~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 14 TVSLEKYRGKVSLVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EecHHHhCCCEEEEEEeCCCCCchhhhHHHH
Confidence 3566666555546789999999998876644
No 158
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.52 E-value=0.031 Score=53.09 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=32.0
Q ss_pred hHhhhhhCCCcccceeEE-C--CE--EeeCCCCHHHHHHHhCC
Q 019491 296 IAKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASGF 333 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~i-n--G~--~y~G~r~l~~La~~sg~ 333 (340)
+.++.++.||+|.||+++ | |+ ...|-.+.++|.++.|-
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 345778899999999998 5 65 68999999999999874
No 159
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.34 E-value=0.2 Score=35.40 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=40.5
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEee
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 319 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~ 319 (340)
++|+.++||+|.+.+..+... ......++++.+.... .++=+..+-..+|++..+|+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEE
Confidence 689999999999999888763 3344566766542111 12233456778999999987654
No 160
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=94.28 E-value=0.1 Score=42.33 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHHhhcccCeEEEccC-CCHHHHHHHHHHhH
Q 019491 242 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 274 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~-WCpHC~~qk~lfgk 274 (340)
.+.|++.-.+.-+.+|++. |||+|+++-+.+.+
T Consensus 17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 4566666555667777788 99999988766654
No 161
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.26 E-value=0.072 Score=48.10 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=41.6
Q ss_pred chhHHHHHHhhcccCeEEEccCCCHHHHHHHH-HHhHHhh-ccCc--eeEC--CCCCCCCChhhHhhhhhC--------C
Q 019491 239 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-KQLN--YVEC--FPDGYRKGTKIAKACSDA--------K 304 (340)
Q Consensus 239 ~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~-lfgk~A~-~~l~--yVeC--~~~g~~~~~k~~~lC~~~--------~ 304 (340)
++.+.+.|+.-++.=+...|+.||.-||.+.. .|..... +.|+ ||.. |.+. ++++-..+ |
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999975 7765432 2232 3333 3332 23443333 7
Q ss_pred CcccceeEE---CCE
Q 019491 305 IEGFPTWVI---NGQ 316 (340)
Q Consensus 305 I~GyPTw~i---nG~ 316 (340)
..|+|+-++ +|+
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 889999776 776
No 162
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.21 E-value=0.23 Score=47.81 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=56.1
Q ss_pred HHHHhhcccCeEEEccCCCHHHHHHHHHH---hHHhhccCceeECCCCCC---CCChhhHhhhhhCCCcccceeEE---C
Q 019491 244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMF---GSEAVKQLNYVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI---N 314 (340)
Q Consensus 244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lf---gk~A~~~l~yVeC~~~g~---~~~~k~~~lC~~~~I~GyPTw~i---n 314 (340)
++.+.=++-|+.||+-.-||+|++|.+.. .++-.-.+-.|..|..+. .+......+.++.||+-+|+..+ +
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 33444466789999999999999999865 443222233555542210 00001135678899999999887 4
Q ss_pred -CE---EeeCCCCHHHHHH
Q 019491 315 -GQ---VLSGEQDLSDLAK 329 (340)
Q Consensus 315 -G~---~y~G~r~l~~La~ 329 (340)
++ .-.|..+.++|.+
T Consensus 224 t~~~~pv~~G~iS~deL~~ 242 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKE 242 (256)
T ss_pred CCcEEEEeeccCCHHHHHH
Confidence 33 3589999999975
No 163
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.12 E-value=0.3 Score=46.87 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=51.8
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhhc-cCceeECCCCCCC-CC----hhhHhhhhhCCCcccceeEE---C-CE---
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR-KG----TKIAKACSDAKIEGFPTWVI---N-GQ--- 316 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~~-~l~yVeC~~~g~~-~~----~k~~~lC~~~~I~GyPTw~i---n-G~--- 316 (340)
++-|+.||+-.-||+|++|.+....-+.+ .+..+...-||.. .+ .......++.||+-+|+.++ + ++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 56789999999999999999875443211 2433333223211 00 01123457899999999887 3 33
Q ss_pred EeeCCCCHHHHHH
Q 019491 317 VLSGEQDLSDLAK 329 (340)
Q Consensus 317 ~y~G~r~l~~La~ 329 (340)
.-.|..+.++|.+
T Consensus 223 v~~G~iS~deL~~ 235 (248)
T PRK13703 223 LSYGFITQDDLAK 235 (248)
T ss_pred EeeccCCHHHHHH
Confidence 3589999999975
No 164
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=94.08 E-value=0.068 Score=46.96 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.7
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhC
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 332 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg 332 (340)
.+..++.||.|.||++|||+.+-|...++.|.+..+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence 455778899999999999999999999999988754
No 165
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.06 E-value=0.14 Score=42.68 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=47.6
Q ss_pred HHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHhh----ccCceeECCCCCCCCC---------------hhhHhhhhh
Q 019491 243 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKG---------------TKIAKACSD 302 (340)
Q Consensus 243 ~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A~----~~l~yVeC~~~g~~~~---------------~k~~~lC~~ 302 (340)
+.+++.-.+.-+.+|+ +.|||.|.++.+.+.+... +.+..|-...|....- ....++.++
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 4555543445566666 6999999988766544211 1122222211110000 001356777
Q ss_pred CCCccc---------ceeEE---CCE---EeeCCCCHHHHHHH
Q 019491 303 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA 330 (340)
Q Consensus 303 ~~I~Gy---------PTw~i---nG~---~y~G~r~l~~La~~ 330 (340)
+|+... |+..+ +|+ .+.|...-+++.+.
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 888887 77665 565 57777666666553
No 166
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.77 E-value=0.046 Score=46.85 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=30.7
Q ss_pred ccCCCHHHHHHHHHHhHH---hhccCceeECCCC--C-CCCChhhHhhhh--hCCCcccceeEE--CCEEeeCC
Q 019491 258 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFPD--G-YRKGTKIAKACS--DAKIEGFPTWVI--NGQVLSGE 321 (340)
Q Consensus 258 gA~WCpHC~~qk~lfgk~---A~~~l~yVeC~~~--g-~~~~~k~~~lC~--~~~I~GyPTw~i--nG~~y~G~ 321 (340)
|-+|||.|.+.+|...+. +.+...+|.|... . +.+ +....=+ +.+|++.||++. ++++..+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkd--p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKD--PNNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC---TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCC--CCCCceEcceeeeeecceEEEECCCCccchh
Confidence 447999999999876552 2223334555321 1 111 0112112 489999999886 45565554
No 167
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.43 E-value=0.075 Score=45.76 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=41.9
Q ss_pred CchhHHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc----cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE
Q 019491 238 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 313 (340)
Q Consensus 238 S~~~~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~----~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i 313 (340)
+.+...+++..-++..+..+..+|||.|.+.-|.|.|-|.. ++.++-=+.+ ... ..+.-. .|.+..||.++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~---~el-~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN---KEL-MDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH---HHH-TTTTTT--SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC---hhH-HHHHHh-CCCeecCEEEE
Confidence 34445566666666788899999999999999999885421 2344433322 111 122222 78999999998
Q ss_pred ---CCEE--eeCCCC
Q 019491 314 ---NGQV--LSGEQD 323 (340)
Q Consensus 314 ---nG~~--y~G~r~ 323 (340)
+|+. .=|+|.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 4553 356665
No 168
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=92.97 E-value=0.4 Score=35.67 Aligned_cols=61 Identities=18% Similarity=-0.020 Sum_probs=39.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
.++|+.++||+|++.+-...+. ......++++... +..+..++-+...-...|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 3789999999999988877653 3345556665421 11113454455556679999888754
No 169
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.84 E-value=0.13 Score=45.02 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.2
Q ss_pred HhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHHh
Q 019491 297 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 331 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~s 331 (340)
.+...+.||.|.||+++||+ .+.|.+.+++|.+..
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 45678899999999999999 899999999998764
No 170
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.74 E-value=0.13 Score=42.63 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=32.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~ 304 (340)
+++|+-|||+.|++.++.+.+. .....++|-..+.... ....++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~s~-~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGLDA-ATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence 4799999999999999999874 3344455555443222 22556676666
No 171
>PLN02412 probable glutathione peroxidase
Probab=92.69 E-value=0.35 Score=42.79 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=22.3
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhH
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk 274 (340)
.+.|+..-.+.=+++|+|.|||.|+++.+.+.+
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 455665544444567889999999987655543
No 172
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.65 E-value=0.15 Score=42.39 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 305 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I 305 (340)
+++|+-++||+|++.++++.+. .....++|-..+.... ....++.++.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~~~~~~~~ 50 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEEPPSK-EELKKWLEKSGL 50 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCCcccH-HHHHHHHHHcCC
Confidence 4799999999999999999874 2234456655443211 123455555553
No 173
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.57 E-value=0.34 Score=35.64 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=38.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~ 317 (340)
.++|+.++||+|++.+-.+.+. ......++.+...... +..+.-+...-...|++++ ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCCE
Confidence 3789999999999999988763 2234456665421111 1223334455667899998 5543
No 174
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.50 E-value=0.41 Score=35.65 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=36.9
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEEeeC
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLSG 320 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~y~G 320 (340)
+.|+.++||+|++.+..+... ......++.+.+. . ...-+..+-...|+++.+ |+...+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~----~~~~~~~~~~~vP~L~~~~~~~l~e 61 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E----ATPIRMIGAKQVPILEKDDGSFMAE 61 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h----HHHHHhcCCCccCEEEeCCCeEeeh
Confidence 579999999999999988763 2233445555332 1 111123344568999886 655443
No 175
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.39 E-value=0.25 Score=41.25 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=39.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEEeeC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG 320 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~y~G 320 (340)
+++|+-++||+|++.+.++.+. ...+.++|...+.... ....++.++.|. |+=.++- +|+.|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGPTR-EELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChhhH-HHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 4689999999999999999874 3345567765443221 224455666663 2222332 6665544
No 176
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.36 E-value=0.23 Score=41.47 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHHHHhhc-ccC-eEEEccCCCHHHHHHHHHHhHHh--h--ccCceeECCCCCCCCChhhHhhhhhCCCcccce
Q 019491 243 LSLAKHLH-AIG-AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 310 (340)
Q Consensus 243 ~~la~~L~-~~g-~~~YgA~WCpHC~~qk~lfgk~A--~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPT 310 (340)
+.+.+... +.- +.+|.+.|||.|+++.+.+.+.. . +.+..|-+..+... ...+..++.++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 44555543 222 44556999999999988776532 1 23444444433211 13355666666 3774
No 177
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.04 E-value=0.19 Score=40.97 Aligned_cols=49 Identities=8% Similarity=0.181 Sum_probs=32.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~ 304 (340)
+++|+-++||.|++.+.++.+. .....++|-..+... .....++..+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~-~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKEPPT-KEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCCCC-HHHHHHHHHhcC
Confidence 4689999999999999999874 334556776654322 122444454444
No 178
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=91.56 E-value=0.18 Score=42.49 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHH
Q 019491 242 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 275 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~ 275 (340)
.+.|++.-.+.-+.+|++.| ||+|+++.+.|.+.
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 45666655555667778877 79999998888664
No 179
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=90.91 E-value=0.93 Score=39.91 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=23.0
Q ss_pred hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491 241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 274 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk 274 (340)
..+.|.+...+.-+.+|+ +.|||+|..+.+.|.+
T Consensus 20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 345565554444455565 8999999998777654
No 180
>PTZ00256 glutathione peroxidase; Provisional
Probab=90.63 E-value=0.53 Score=42.18 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=22.6
Q ss_pred hHHHHHHhhcccC-eEEEccCCCHHHHHHHHHHhH
Q 019491 241 FALSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 241 ~~~~la~~L~~~g-~~~YgA~WCpHC~~qk~lfgk 274 (340)
..+.|++.-.+.- +.+|.|.|||.|++..+.+.+
T Consensus 31 ~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 31 QLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred CEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 3456665533322 346689999999998776654
No 181
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.60 E-value=1.2 Score=32.83 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=37.6
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
++.|+.++||.|++.+-.+.+. ......++-+.+ +. ..+.-+...-...|+++.+|..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEE
Confidence 3689999999999999888653 222334444432 11 1344444566789999887754
No 182
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=1.3 Score=42.24 Aligned_cols=65 Identities=17% Similarity=0.401 Sum_probs=45.9
Q ss_pred HHHHhhcccCeEEEccCCCHHHHHHHHHHhHHhhc------cCceeECCCCCCCCChhhHhhhhhCCCc------cccee
Q 019491 244 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIE------GFPTW 311 (340)
Q Consensus 244 ~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A~~------~l~yVeC~~~g~~~~~k~~~lC~~~~I~------GyPTw 311 (340)
++++.=+..=++.|+|-|-|.|.+..|.|.+...+ +...||... .++..++++|. -.||.
T Consensus 138 el~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLPT~ 209 (265)
T KOG0914|consen 138 ELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLPTY 209 (265)
T ss_pred HhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCCeE
Confidence 44555455557788899999999999999886433 245787753 24556777775 48998
Q ss_pred EE--CCE
Q 019491 312 VI--NGQ 316 (340)
Q Consensus 312 ~i--nG~ 316 (340)
++ +|+
T Consensus 210 ilFq~gk 216 (265)
T KOG0914|consen 210 ILFQKGK 216 (265)
T ss_pred EEEccch
Confidence 87 665
No 183
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=90.19 E-value=1.2 Score=33.69 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=42.8
Q ss_pred EEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeC
Q 019491 256 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSG 320 (340)
Q Consensus 256 ~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G 320 (340)
.|+.++||+|++..-.+... .....++++++... ..++-+...-.-.|+++.||+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~d 59 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLTD 59 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEES
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEeC
Confidence 48999999999998877763 33455677765431 2466666777889999999886653
No 184
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.11 E-value=1 Score=33.92 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=35.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in 314 (340)
++.|+.+.||.|++.+..+.+. ......++.++. + ..++ +..+-...|+++++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-GIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-CCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 6789999999999999887663 222334544332 1 1232 44667789999986
No 185
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=89.79 E-value=0.29 Score=43.24 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=24.8
Q ss_pred HHHHHHhhcccCeEEEccCC-CHHHHHHHHHHhHH
Q 019491 242 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 275 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~W-CpHC~~qk~lfgk~ 275 (340)
.+.+++.-.+.-+..|+|.| ||.|.++.+.|.+.
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 45666654445577888988 99999998777653
No 186
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.68 E-value=0.48 Score=42.03 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=30.2
Q ss_pred HhhhhhCCCcccceeEECCE-EeeCCCCHHHHHHHh
Q 019491 297 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 331 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~-~y~G~r~l~~La~~s 331 (340)
.+..++.||.|.||.++||+ ...|.++.|++.+..
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 45677889999999999987 689999999998764
No 187
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.31 E-value=2.6 Score=32.88 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=52.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh-hc--cCceeECCCCCCCCChhhHhhhhhCCCcccceeEECC-------EEeeCCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA-VK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD 323 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A-~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG-------~~y~G~r~ 323 (340)
+.+|+-+-|+=|.+.++...+-+ .. .+..||-+.| .++-.+++. -.|-..++| +...+..+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 57999999999999999988632 12 3668888854 367788996 699999977 57889999
Q ss_pred HHHHHHHh
Q 019491 324 LSDLAKAS 331 (340)
Q Consensus 324 l~~La~~s 331 (340)
.++|.++.
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 188
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=88.47 E-value=1.1 Score=40.77 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=50.0
Q ss_pred hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC----------CCCh-------hh
Q 019491 241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKGT-------KI 296 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~----------~~~~-------k~ 296 (340)
..+.|++...+.-+.+|+ +.|||.|..+.+.|.+.. ++ .+. -|..+.... ..+. ..
T Consensus 22 ~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 22 IEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred eEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 344555555454455666 999999999877665432 11 011 111111000 0000 12
Q ss_pred HhhhhhCCC----ccc--ceeEE---CCE-----Ee--eCCCCHHHHHHHh
Q 019491 297 AKACSDAKI----EGF--PTWVI---NGQ-----VL--SGEQDLSDLAKAS 331 (340)
Q Consensus 297 ~~lC~~~~I----~Gy--PTw~i---nG~-----~y--~G~r~l~~La~~s 331 (340)
.++++++|+ .|. |+-.| +|+ .+ ...|+.+++.+..
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 588999998 466 87554 675 12 3447888888765
No 189
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.35 E-value=0.59 Score=40.21 Aligned_cols=48 Identities=10% Similarity=0.180 Sum_probs=30.8
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA 303 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~ 303 (340)
+++|+-+|||.|++.+.++.+. .....++|-..+.... ....++.+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~~~~~-~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSSPLTI-DEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCChhhH-HHHHHHHHHh
Confidence 5799999999999999999764 3334456654443211 1244455554
No 190
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.28 E-value=1.4 Score=40.32 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=51.7
Q ss_pred HHHHHHhhcccCeE-EEccCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC----------CCC---------hh
Q 019491 242 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKG---------TK 295 (340)
Q Consensus 242 ~~~la~~L~~~g~~-~YgA~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~----------~~~---------~k 295 (340)
.+.|.++-.+.-+. +|-|.|||.|..+.+.|.+.. ++ .+. -|.++.... +.+ ..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 46677764443333 688999999998876665421 11 111 222221000 000 01
Q ss_pred hHhhhhhCCCc------ccceeEE---CCEE-------eeCCCCHHHHHHHh
Q 019491 296 IAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 331 (340)
Q Consensus 296 ~~~lC~~~~I~------GyPTw~i---nG~~-------y~G~r~l~~La~~s 331 (340)
..++++++|+. .+|+-+| +|+. ..+.|+.+||.+..
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 24788889984 5898665 6762 15679999997765
No 191
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=88.18 E-value=0.56 Score=39.50 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=22.5
Q ss_pred hHHHHHHhhc-ccCeEEE-ccCCCHHHHHHHHHHhH
Q 019491 241 FALSLAKHLH-AIGAKMY-GAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 241 ~~~~la~~L~-~~g~~~Y-gA~WCpHC~~qk~lfgk 274 (340)
..+.+.+... +.-+..| .+.|||.|.++.+.+.+
T Consensus 18 ~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 3566766544 3334444 49999999988766644
No 192
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=0.53 Score=40.82 Aligned_cols=62 Identities=23% Similarity=0.436 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhHH---hhccCceeECCCCCCCCC--hhhHhhhhhCCC-cccceeEE-C--CEEeeCCC
Q 019491 260 FWCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI-N--GQVLSGEQ 322 (340)
Q Consensus 260 ~WCpHC~~qk~lfgk~---A~~~l~yVeC~~~g~~~~--~k~~~lC~~~~I-~GyPTw~i-n--G~~y~G~r 322 (340)
+|||.|.+..|.+.+. |.++..+|-|+... +.. ++....=++.++ .+.||+.- + ++|..|.|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q 113 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQ 113 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeEEcCccccchHhH
Confidence 5999999999998763 22344555554221 100 011233345667 99999765 3 33555543
No 193
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=0.82 Score=42.22 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.3
Q ss_pred hHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhC
Q 019491 296 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 332 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg 332 (340)
..++.++.||+|-||.++||+.|.|..++++|.+...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~ 240 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIID 240 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHH
Confidence 4677889999999999999999999999999988754
No 194
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=86.99 E-value=0.73 Score=39.77 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.3
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCCCHH
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQDLS 325 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~ 325 (340)
.+.+++.||.|.||.+|||+.+.+.++.+
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 46788899999999999999877776554
No 195
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.31 E-value=0.95 Score=37.73 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 288 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~ 288 (340)
+++|+-++|+.|++.++.|.+. .....++|-..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCC
Confidence 5799999999999999999874 334556666544
No 196
>PRK12559 transcriptional regulator Spx; Provisional
Probab=86.26 E-value=1.1 Score=38.70 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=25.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG 289 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g 289 (340)
+++|+-|+|+.|++.+..+.+. .....++|-..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCCc
Confidence 5799999999999999999874 3334455555443
No 197
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.16 E-value=2.1 Score=32.61 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=35.2
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEEC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 314 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in 314 (340)
+++|+.++||+|.+.+....+. .++ .++..++. . +..++=+..+-...|+++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence 4789999999999999877663 344 46664331 1 12233333456779999873
No 198
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=85.53 E-value=3.8 Score=29.99 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=37.6
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCC-CCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 318 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~-g~~~~~k~~~lC~~~~I~GyPTw~inG~~y 318 (340)
++|+-+.||+|++.+-.+.+. ......++.+.. +.++ ..+.-+...-...|+++.+|+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILKGETR---TPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCCcccC---CHHHHHhCCCCCCCEEEECCEEE
Confidence 689999999999998877653 233444555432 1111 23333444556789999988654
No 199
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=85.38 E-value=3.3 Score=32.61 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=39.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~ 317 (340)
++.|+.+.||+|++.+-.+... ......++.+... . ..++-+...-...|++++| |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence 7899999999999998877663 3334456665432 1 1234444566789999997 654
No 200
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=84.75 E-value=3.4 Score=37.70 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=22.2
Q ss_pred HHHHHhhcccC--eEEEccCCCHHHHHHHHHHhH
Q 019491 243 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 243 ~~la~~L~~~g--~~~YgA~WCpHC~~qk~lfgk 274 (340)
+.|++...+.- +.+|.|.|||.|..+.+.|.+
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~ 50 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAK 50 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence 56666544222 337899999999998776654
No 201
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=1.5 Score=35.23 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=47.8
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCC--------hhhHhhhhhCCCcccceeEE-CCEEeeC
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG--------TKIAKACSDAKIEGFPTWVI-NGQVLSG 320 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~--------~k~~~lC~~~~I~GyPTw~i-nG~~y~G 320 (340)
++|||--||.|...++.|.+. ..+.+|||.+....|=. .+.-+..+.+|-=|.|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 799999999999999999885 34567899987654321 11224456678888999988 6776666
No 202
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=81.46 E-value=1.8 Score=36.96 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=19.5
Q ss_pred HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHh
Q 019491 242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFG 273 (340)
Q Consensus 242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfg 273 (340)
.+.|+..-.+.-++.|+ ..|||+|..+.+.+.
T Consensus 22 ~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~ 54 (154)
T PRK09437 22 QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLR 54 (154)
T ss_pred EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHH
Confidence 45666643334444554 468999988765543
No 203
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=81.13 E-value=3.2 Score=37.62 Aligned_cols=91 Identities=8% Similarity=0.039 Sum_probs=53.0
Q ss_pred hHHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCC------C-------CCh------
Q 019491 241 FALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY------R-------KGT------ 294 (340)
Q Consensus 241 ~~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~------~-------~~~------ 294 (340)
..+.|..+..+..+.+|+ +.|||+|......|.+.+ ++ .+. .|.+++... . .+.
T Consensus 27 ~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~ 106 (199)
T PTZ00253 27 KKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLA 106 (199)
T ss_pred cEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEE
Confidence 346777776666777777 488999998776654432 11 111 333332210 0 000
Q ss_pred -hhHhhhhhCCCc------ccceeEE---CCE-E------eeCCCCHHHHHHHh
Q 019491 295 -KIAKACSDAKIE------GFPTWVI---NGQ-V------LSGEQDLSDLAKAS 331 (340)
Q Consensus 295 -k~~~lC~~~~I~------GyPTw~i---nG~-~------y~G~r~l~~La~~s 331 (340)
...++++.+|+. .||+..| +|+ + ..-.|+++++.+..
T Consensus 107 D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 107 DKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred CcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 135788999985 4788765 565 1 14457888877665
No 204
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=80.87 E-value=1.6 Score=39.87 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=26.3
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCC---------CHHHHHHHhCC
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASGF 333 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r---------~l~~La~~sg~ 333 (340)
.+..++.||+|.||.+|||+.+-+.+ +.|++.+..+|
T Consensus 157 ~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~ 202 (207)
T PRK10954 157 EKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKF 202 (207)
T ss_pred HHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHH
Confidence 34557789999999999999644422 45777666544
No 205
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=80.04 E-value=1.9 Score=39.36 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHhhcccCeEEEccCCCHHHHHHHHHHhHHh--h--cc--CceeECCCCC---CCCChhhHhhhh-hCCCccccee
Q 019491 242 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQ--LNYVECFPDG---YRKGTKIAKACS-DAKIEGFPTW 311 (340)
Q Consensus 242 ~~~la~~L~~~g~~~YgA~WCpHC~~qk~lfgk~A--~--~~--l~yVeC~~~g---~~~~~k~~~lC~-~~~I~GyPTw 311 (340)
.+.|+++-.+.-++.|.|.||+.|+++ +.+.+.. + +. |--|.|..-+ ..+.....+.|+ ++|++ ||-.
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~ 94 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMF 94 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeE
Confidence 456777666666788999999999743 3333321 1 12 3357774210 011123567786 67874 8876
Q ss_pred E---ECCE
Q 019491 312 V---INGQ 316 (340)
Q Consensus 312 ~---inG~ 316 (340)
. +||+
T Consensus 95 ~k~dvnG~ 102 (183)
T PRK10606 95 SKIEVNGE 102 (183)
T ss_pred EEEccCCC
Confidence 3 3775
No 206
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=79.43 E-value=3 Score=35.99 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~ 304 (340)
+++|+-|+|+.|++.+..+.+. .....++|-..++... ....++.++.|
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~~~s~-~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKEPLTK-EEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCCCCCH-HHHHHHHHHhC
Confidence 5799999999999999999774 3334455554443222 12345555444
No 207
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=79.01 E-value=2.7 Score=35.42 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=31.5
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 305 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I 305 (340)
++++|+-|.|++|++.+..+.+. .....++|-..++... ....++.++.|+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~-gi~~~~~d~~~~p~s~-~eL~~~l~~~g~ 51 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAA-GHEVEVRDLLTEPWTA-ETLRPFFGDLPV 51 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCCcEEeehhcCCCCH-HHHHHHHHHcCH
Confidence 46899999999999999998763 3333445544333221 124455555543
No 208
>PRK01749 disulfide bond formation protein B; Provisional
Probab=76.10 E-value=19 Score=32.59 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhh
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 183 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~ 183 (340)
|+.|.+++..++++.+++.|+-|++ .-.-|+.|+.--..-+.+.++.+.
T Consensus 12 r~~~~l~~l~~~~ll~~Al~~Q~~l----gl~PC~LCi~QR~~~~~l~l~~li 60 (176)
T PRK01749 12 RGAWLLLAFTALALELTALYFQHVM----LLKPCVMCIYERVALFGILGAGLI 60 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776666655 357999999877555444444433
No 209
>PRK02110 disulfide bond formation protein B; Provisional
Probab=74.64 E-value=20 Score=32.34 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 181 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~lt 181 (340)
|..|..++++++++.+++.|+-|++ .-.-|+.|+.--+.-+.+.++.
T Consensus 12 R~~~~~~~l~~~~~l~~Al~~Q~~~----g~~PC~LCi~QR~~~~~i~l~~ 58 (169)
T PRK02110 12 RRLLVLLGLICLALVGGALYLQYVK----GEDPCPLCIIQRYAFLLIAIFA 58 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHH
Confidence 5677777777777767666555554 4679999998765555444433
No 210
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=74.57 E-value=4.5 Score=33.39 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491 244 SLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 274 (340)
Q Consensus 244 ~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk 274 (340)
.+.+.-.+.-+++|+ +.|||+|..+.+.+.+
T Consensus 16 ~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 16 SLSDFKGKWVVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred ehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHH
Confidence 444443444455665 7899999999776654
No 211
>PRK15000 peroxidase; Provisional
Probab=73.61 E-value=6.8 Score=35.91 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=50.5
Q ss_pred HHHHHHhhcc-cCeEEEcc-CCCHHHHHHHHHHhHHh--hc--cCc--eeECCCCCCC----------CC----------
Q 019491 242 ALSLAKHLHA-IGAKMYGA-FWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR----------KG---------- 293 (340)
Q Consensus 242 ~~~la~~L~~-~g~~~YgA-~WCpHC~~qk~lfgk~A--~~--~l~--yVeC~~~g~~----------~~---------- 293 (340)
..+|.++.+. .-+.+|++ .|||.|..+.+.|.+.+ ++ .+. -|.++..... .+
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 4566665433 34556667 59999999877665431 11 111 1222210000 00
Q ss_pred hhhHhhhhhCCCc------ccceeEE---CCE---E----eeCCCCHHHHHHHh
Q 019491 294 TKIAKACSDAKIE------GFPTWVI---NGQ---V----LSGEQDLSDLAKAS 331 (340)
Q Consensus 294 ~k~~~lC~~~~I~------GyPTw~i---nG~---~----y~G~r~l~~La~~s 331 (340)
....++++++|+. ++|+-++ +|+ . ..-.|+.+|+.+..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 0124778889987 7888665 665 1 23458889888765
No 212
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=71.95 E-value=3.3 Score=35.68 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.2
Q ss_pred cCeEEEccCCCHHHHHHHHHHhHH
Q 019491 252 IGAKMYGAFWCSHCLEQKQMFGSE 275 (340)
Q Consensus 252 ~g~~~YgA~WCpHC~~qk~lfgk~ 275 (340)
+-+..|+-|-||||++..+...+.
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHH
Confidence 337899999999999999887664
No 213
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=71.93 E-value=2.5 Score=35.06 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHhhcccCeEEEccCCCHH-HHHHHHHHhH
Q 019491 243 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 274 (340)
Q Consensus 243 ~~la~~L~~~g~~~YgA~WCpH-C~~qk~lfgk 274 (340)
+.+.+.-.+.-+..|++.||+. |.++-+.+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 3444443344577888999997 9988766544
No 214
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=71.52 E-value=18 Score=29.10 Aligned_cols=36 Identities=6% Similarity=-0.191 Sum_probs=19.8
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019491 178 FFISLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSS 214 (340)
Q Consensus 178 f~ltl~g~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
-++...|.+|++..+. ..+++-+++++++++++..+
T Consensus 26 ~v~~~fG~~~~~~~~~-l~~~i~~v~~lL~~lGii~D 61 (78)
T TIGR01598 26 SILDNFGVLWLSFNRQ-LNAPIAAITTILAVVGIIMD 61 (78)
T ss_pred HHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHheecC
Confidence 3566778888876553 23333334445555555555
No 215
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=71.36 E-value=2.4 Score=38.08 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=22.8
Q ss_pred HHHHHHhhcccCeEEEc-cCCCHHHHHHHHHHhH
Q 019491 242 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 274 (340)
Q Consensus 242 ~~~la~~L~~~g~~~Yg-A~WCpHC~~qk~lfgk 274 (340)
.+.+++.-.+.-+.+|+ |.|||+|..+.+.|.+
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 34555544444566777 9999999998777654
No 216
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=70.52 E-value=4.2 Score=34.33 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=17.4
Q ss_pred eEEEccCCCHHHHHHHHHHhH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk 274 (340)
+.+|+-|-||||.++.+.+.+
T Consensus 16 v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 16 VTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEE-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhh
Confidence 779999999999999877654
No 217
>PRK13189 peroxiredoxin; Provisional
Probab=69.44 E-value=13 Score=34.65 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=49.7
Q ss_pred HHHHHhhccc-C-eEEEccCCCHHHHHHHHHHhHHh--hc--c--CceeECCCCCC------------CCCh-------h
Q 019491 243 LSLAKHLHAI-G-AKMYGAFWCSHCLEQKQMFGSEA--VK--Q--LNYVECFPDGY------------RKGT-------K 295 (340)
Q Consensus 243 ~~la~~L~~~-g-~~~YgA~WCpHC~~qk~lfgk~A--~~--~--l~yVeC~~~g~------------~~~~-------k 295 (340)
+.+.++++.. . +.+|-|.|||.|..+.+.|.+.+ ++ . +--|.++.... ..+. .
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~ 106 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADD 106 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcC
Confidence 5666665543 2 34788999999998766665432 11 1 11233321100 0000 1
Q ss_pred hHhhhhhCCCc-------ccceeEE---CCEE-------eeCCCCHHHHHHHh
Q 019491 296 IAKACSDAKIE-------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 331 (340)
Q Consensus 296 ~~~lC~~~~I~-------GyPTw~i---nG~~-------y~G~r~l~~La~~s 331 (340)
..++++++|+. ..|+.+| +|+. ....|+.+++.++.
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l 159 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLV 159 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 24778888875 4676555 5652 23678888887766
No 218
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=3.8 Score=39.01 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=46.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHh--hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE---EeeCCCCHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLS 325 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A--~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~ 325 (340)
++.|.|+||..|+++++.|...+ .++..++--..++ +.++|....|++-|+.+. +|+ +..|....+
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~------~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE------FPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh------hhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 56788999999999999987643 2334444444332 579999999999999887 454 455554443
No 219
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.42 E-value=6.2 Score=37.54 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=27.3
Q ss_pred hhhhhCCCcccceeEEC-CEEeeCCCCHHHHHHH
Q 019491 298 KACSDAKIEGFPTWVIN-GQVLSGEQDLSDLAKA 330 (340)
Q Consensus 298 ~lC~~~~I~GyPTw~in-G~~y~G~r~l~~La~~ 330 (340)
+..++.||+|.||++++ |-..+|.++.+.|.+.
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~a 208 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDA 208 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHHH
Confidence 45788999999999994 4589999999877643
No 220
>PRK04388 disulfide bond formation protein B; Provisional
Probab=66.95 E-value=36 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhcc
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 185 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~ 185 (340)
|....+.+++++++.+++.|+-|++ .-.-|+.|+.--+.-+.+.++.+.+.
T Consensus 9 r~~~ll~~l~~~~ll~~Aly~Q~~~----gl~PC~LCi~QR~~~~~i~l~~li~~ 59 (172)
T PRK04388 9 RAQFLLGFLACAGLLAYAIFVQLHL----GLEPCPLCIFQRIAFAALALLFLIGA 59 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777776666555 35799999987766665555555443
No 221
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=65.08 E-value=12 Score=33.46 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=53.8
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCCCCHHHHHHHhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 333 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~sg~ 333 (340)
+..|..|-|+-|++-.+.... +.-++..++-++- .-.| +++.....-++==|-+|||+-.+|-..+++++++..-
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-~Gf~Vk~~~~~d~---~alK-~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-NGFEVKVVETDDF---LALK-RRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-CCcEEEEeecCcH---HHHH-HhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 678999999999998887764 2323444444321 1111 2344445557788999999999999999999998765
Q ss_pred CC
Q 019491 334 PE 335 (340)
Q Consensus 334 ~g 335 (340)
+.
T Consensus 103 ~p 104 (149)
T COG3019 103 KP 104 (149)
T ss_pred CC
Confidence 43
No 222
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=63.55 E-value=41 Score=31.85 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhcc
Q 019491 131 SYGRLILLGSSTSMAAAS-AYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 185 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS-~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~ 185 (340)
|..|.++++.+.+..+++ .||-|.+ .=+-|+.|+.--+.-+.+.+..+.+.
T Consensus 23 R~~wlll~l~~~~L~~~Al~yfQ~vl----gL~PC~LCIyQR~a~l~i~l~gLIg~ 74 (218)
T PRK04307 23 RFLWLLMAIAMGGLIILAHSFFQIYL----YMAPCEQCVYIRFAMFVMAIGGVIAA 74 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777666666 4666665 24799999988866666666555544
No 223
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=60.75 E-value=22 Score=30.01 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.2
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 019491 163 TCSYCLTSALLSFSLFFISL 182 (340)
Q Consensus 163 ~C~~Cl~Savis~~Lf~ltl 182 (340)
.||||+..|+.....+.+.+
T Consensus 59 sCpwC~gvWvA~~~~~~~v~ 78 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYVF 78 (105)
T ss_pred cChhHHHHHHHHHHHHHHHH
Confidence 89999999988777666554
No 224
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=60.64 E-value=4.2 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.646 Sum_probs=18.2
Q ss_pred ccCeEEEccCCCHHHHHHHHHH
Q 019491 251 AIGAKMYGAFWCSHCLEQKQMF 272 (340)
Q Consensus 251 ~~g~~~YgA~WCpHC~~qk~lf 272 (340)
+..+++|+-+-||||.+..+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 3458999999999999987644
No 225
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=60.25 E-value=12 Score=34.02 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.3
Q ss_pred hhhhhCCCcccceeEEC---C--EEeeCCCCHHHHHHHhC
Q 019491 298 KACSDAKIEGFPTWVIN---G--QVLSGEQDLSDLAKASG 332 (340)
Q Consensus 298 ~lC~~~~I~GyPTw~in---G--~~y~G~r~l~~La~~sg 332 (340)
+...+.||.|.||+++| | +.|-|..-++.+.++.+
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l~ 209 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFLG 209 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHhC
Confidence 45677899999999994 4 78999999999988764
No 226
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=58.58 E-value=39 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=34.9
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC--cccceeEECCEEe
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVINGQVL 318 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I--~GyPTw~inG~~y 318 (340)
++.|+.+.||.|.+..-.+... ......++-+.. .+ ...-.+.+- ...|+++.+|+..
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~-gl~~~~~~~~~~--~~----~~~~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK-GVPYEYVEEDLG--NK----SELLLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc-CCCCEEEEeCcc--cC----CHHHHHhCCCCCCCCEEEECCEEe
Confidence 4789999999999998877663 222333433322 11 122233332 5799999887643
No 227
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=58.09 E-value=3.8 Score=35.32 Aligned_cols=17 Identities=53% Similarity=1.114 Sum_probs=12.7
Q ss_pred eEEEccCCCHHHHHHHHHHhHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSE 275 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~ 275 (340)
-.|||||||- .+.|++|
T Consensus 93 stmygapwcd-----iqffeqe 109 (159)
T PF14673_consen 93 STMYGAPWCD-----IQFFEQE 109 (159)
T ss_pred ccccCCCccc-----eeehhhc
Confidence 4599999996 3567665
No 228
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=57.53 E-value=7.1 Score=35.02 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=14.6
Q ss_pred HhhhhhCCCcccceeEE-C------CEEeeCCCCHHHHH
Q 019491 297 AKACSDAKIEGFPTWVI-N------GQVLSGEQDLSDLA 328 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~i-n------G~~y~G~r~l~~La 328 (340)
.++.++.+|+++||.++ | |-+.+|-.+.+.+.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE---------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 57899999999999998 4 33678877766654
No 229
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.01 E-value=41 Score=32.49 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=75.5
Q ss_pred ccccccchhHHHH--HHHHHHHhhcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 019491 99 CGDVLNSDYAVVF--VAVLGLLLARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFS 176 (340)
Q Consensus 99 C~~VL~S~ya~vf--vaalg~ll~~~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~ 176 (340)
=+.|.||-|=.++ ++.+..++.-+..+ +|...++.....+..+|-.||+.+.+|-- -.=.-=+.|+.+++.
T Consensus 29 ps~~~ns~yyfv~Il~atlfill~Ik~~~-----kwI~r~i~~v~V~~~l~yvfl~llsIf~~--~~~~i~~~si~~aI~ 101 (277)
T COG3389 29 PSPVSNSVYYFVYILVATLFILLAIKLGR-----KWIFRGIYSVAVASVLFYVFLILLSIFLV--LVYAINIASIGLAIG 101 (277)
T ss_pred CCCCcCceeeehhHHHHHHHHHhheeecc-----eeeehhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4567788777666 44555555444444 45444444444455566666666655532 122223578888999
Q ss_pred HHHHHhhccchHHHH--H---------HHHHHH-HHHHHHHHHHHhhccCCCCCCcccccCCCCCCcccccCCCchhHHH
Q 019491 177 LFFISLKEFSVEEIQ--K---------VLGVQL-CIASLVVAALSTSYSSIQPLSSSVAEANLPFFETEITTSSSPFALS 244 (340)
Q Consensus 177 Lf~ltl~g~~~~d~~--~---------~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itt~S~~~~~~ 244 (340)
++.+-++..+|--+. . ++++.+ +...++++..+.+|-.. +-=-+.-+++
T Consensus 102 ~~~lL~~~peWyVid~ag~~la~Giaai~GIsfgv~pavvlL~~lavYDaI-------------------sVYkT~HMIs 162 (277)
T COG3389 102 LVYLLYKYPEWYVIDLAGFFLAVGIAAIFGISFGVLPAVVLLIALAVYDAI-------------------SVYKTRHMIS 162 (277)
T ss_pred HHHhhhhccceEEeehHHHHHHhhHHHhheeecchHHHHHHHHHHHHHHHH-------------------HHHhHHHHHH
Confidence 999888888885322 1 222222 33344455555566542 2222356888
Q ss_pred HHHhhcccCeEEE
Q 019491 245 LAKHLHAIGAKMY 257 (340)
Q Consensus 245 la~~L~~~g~~~Y 257 (340)
+|+.-.+.+.-|-
T Consensus 163 lA~~v~d~~lPml 175 (277)
T COG3389 163 LAEGVMDLDLPML 175 (277)
T ss_pred HHHHHHhcCCceE
Confidence 8888888876653
No 230
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=52.67 E-value=83 Score=26.86 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhc---c--CceeECCCCCCCCChhhHhhhhhCCCc--ccceeEE----CCEE---eeC
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQV---LSG 320 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~---~--l~yVeC~~~g~~~~~k~~~lC~~~~I~--GyPTw~i----nG~~---y~G 320 (340)
..|.-.--.+.++.++.+.+-|.+ + +.++||+.. .++.+..|++ .+|+..| +++. ++|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~--------~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~ 171 (184)
T PF13848_consen 100 ILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF--------PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEG 171 (184)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT--------HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SS
T ss_pred EEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh--------HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCC
Confidence 344333466777778777665522 2 347888732 4788899998 8999997 3453 279
Q ss_pred CCCHHHHHHHh
Q 019491 321 EQDLSDLAKAS 331 (340)
Q Consensus 321 ~r~l~~La~~s 331 (340)
..+.++|.+|.
T Consensus 172 ~~~~~~i~~Fl 182 (184)
T PF13848_consen 172 EITPESIEKFL 182 (184)
T ss_dssp CGCHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 99999999885
No 231
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.34 E-value=10 Score=35.66 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.0
Q ss_pred HhhhhhCCCcccceeEE--CCEEe
Q 019491 297 AKACSDAKIEGFPTWVI--NGQVL 318 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~i--nG~~y 318 (340)
..+|++.|+.||||+.+ ||+.|
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceE
Confidence 46899999999999988 88854
No 232
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=50.43 E-value=27 Score=29.10 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=33.8
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 305 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I 305 (340)
+++||-|-|+-|++.+..+.+. ...+.++|-..++... +.-..+.++.|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~p~t~-~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-GIEPEVVKYLKNPPTK-SELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEeccCCCcCH-HHHHHHHHHcCC
Confidence 4689999999999999999773 4445566665554322 235566666553
No 233
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=49.51 E-value=63 Score=28.26 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=33.1
Q ss_pred CceeECCCCCCCCChhhHhhhhhCCC--cccceeEE--CCE----Ee--eCCCCHHHHHHHhC
Q 019491 280 LNYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NGQ----VL--SGEQDLSDLAKASG 332 (340)
Q Consensus 280 l~yVeC~~~g~~~~~k~~~lC~~~~I--~GyPTw~i--nG~----~y--~G~r~l~~La~~sg 332 (340)
++.|-...-|.+. ..++.++++| +.||...+ +|. +| +|+.+.+.|.+|+.
T Consensus 57 vAeVGikDYGek~---N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 57 VAEVGIKDYGEKE---NMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp EEEEECBSSSS-C---CHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHH
T ss_pred EEEeCcccccchh---HHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHH
Confidence 4566665544433 3699999999 67999887 332 68 99999999999874
No 234
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=47.50 E-value=1.5e+02 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhh
Q 019491 136 ILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 183 (340)
Q Consensus 136 ~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~ 183 (340)
+.+..++++..++.|+-|++ .-.-|+.|+.--+..+.+.++.+.
T Consensus 13 l~~l~~~~~~~~aly~q~v~----gl~PC~LCi~QRi~~~~l~l~~li 56 (139)
T PRK03113 13 TAWGASFIATLGSLYFSEIM----KFEPCVLCWYQRIFMYPFVLWLGI 56 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44445566667777666665 357999999887666655444443
No 235
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.03 E-value=6.4 Score=39.06 Aligned_cols=8 Identities=38% Similarity=0.198 Sum_probs=0.0
Q ss_pred cccccccc
Q 019491 98 SCGDVLNS 105 (340)
Q Consensus 98 sC~~VL~S 105 (340)
+-..||+|
T Consensus 50 ~a~~vl~s 57 (381)
T PF05297_consen 50 GALTVLYS 57 (381)
T ss_dssp --------
T ss_pred chHHHHHH
Confidence 45555554
No 236
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=46.21 E-value=81 Score=32.75 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred CCCCCCCccccccccchhHHHHHHHHHH---Hh--hcccCCCcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 019491 90 AFCPIGGASCGDVLNSDYAVVFVAVLGL---LL--ARKSFPIGINESYGR-LILLGSSTSMAAASAYFLYILSTNFSGAT 163 (340)
Q Consensus 90 ~~C~i~~~sC~~VL~S~ya~vfvaalg~---ll--~~~~~~~~~~~~~~~-~~L~~~s~~~~vfS~yL~yil~f~ii~a~ 163 (340)
.-|+. .|..-+-|--.++++.++|. ++ ..+.+| |.+- .+++.......+|+.||.|+.-.-...+-
T Consensus 148 ~~C~~---~CeGllismA~kll~L~ig~walf~Rk~~A~mP-----Rvf~~RAlll~LV~~~~fayWLFYiVri~~~r~~ 219 (531)
T KOG3814|consen 148 EPCGT---DCEGLLISMAFKLLILLIGIWALFFRKAMADMP-----RVFVVRALLLVLVFLIVFAYWLFYIVRILDERYR 219 (531)
T ss_pred ccccc---ccchhhHHHHHHHHHHHHHHHHHHhhhhhccCc-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 44765 59888888777776555553 22 333455 3322 23343444567899999998754322222
Q ss_pred cchhhHHHHHHH
Q 019491 164 CSYCLTSALLSF 175 (340)
Q Consensus 164 C~~Cl~Savis~ 175 (340)
=.-=++.+..++
T Consensus 220 nYk~iV~yatsl 231 (531)
T KOG3814|consen 220 NYKGIVQYATSL 231 (531)
T ss_pred hhHHHHHHHHHH
Confidence 222345555554
No 237
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=45.83 E-value=64 Score=23.71 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEeeCC
Q 019491 260 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 321 (340)
Q Consensus 260 ~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y~G~ 321 (340)
.|||.|.+.+-.+... ......++++... ...-...|+.+.+|+.+.+-
T Consensus 14 s~sp~~~~v~~~L~~~-~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es 62 (72)
T cd03054 14 SLSPECLKVETYLRMA-GIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADS 62 (72)
T ss_pred CCCHHHHHHHHHHHhC-CCceEEEecCCcc------------cCCCcccCEEEECCEEEcCH
Confidence 4999999999887652 2234456665331 11233699999998866443
No 238
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=45.73 E-value=23 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 019491 56 STSGFSPYGWCAGIGGVGFLETTYLSYLKL 85 (340)
Q Consensus 56 ~~~~~~~~~~i~~La~iGll~T~YLT~~kl 85 (340)
.+.|.|++.|+++||+||++-+....|-.+
T Consensus 6 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (243)
T PF05279_consen 6 GLSGSSFFTWFLVLALLGVWSSVAVVMFDL 35 (243)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhHhhheeh
Confidence 456779999999999999998876665544
No 239
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=45.16 E-value=1.5e+02 Score=26.76 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 019491 143 SMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 181 (340)
Q Consensus 143 ~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~lt 181 (340)
+....+.|+-|++ .-+-|+.|+.--+..+.+.+..
T Consensus 25 ~~~~~al~fq~i~----g~~PC~LC~~QR~~~~~~~~i~ 59 (170)
T COG1495 25 LALLAALYFQYIL----GLEPCPLCLYQRIAMYGLGVIL 59 (170)
T ss_pred HHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHHHHHH
Confidence 3334445666665 3579999998887766643333
No 240
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=44.36 E-value=54 Score=28.04 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=37.9
Q ss_pred HHHHhHHhhc---cCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--C--C--EEeeCC-CCHHHHHHHhC
Q 019491 269 KQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N--G--QVLSGE-QDLSDLAKASG 332 (340)
Q Consensus 269 k~lfgk~A~~---~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--n--G--~~y~G~-r~l~~La~~sg 332 (340)
.+.|.+.|.+ .+.+..+.. .+++++.+|+. |+..+ + + ..|.|. .+.++|.+|.-
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~---------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~ 72 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFN---------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIK 72 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE----------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCcEEEEEcH---------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHH
Confidence 4556664432 345555541 48899999999 99887 3 3 269998 89999999863
No 241
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=43.24 E-value=1.2e+02 Score=22.27 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=37.3
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCC-CCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG-YRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g-~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
+++|+.+-||.|++..-.+... ......++.+... .++ ..+.-+..--.-.|+++.+|+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-~i~~~~~~~~~~~~~~~---~~~~~~~~P~~~vP~l~~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-GVDYELVPVDLTKGEHK---SPEHLARNPFGQIPALEDGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-CCCcEEEEeCccccccC---CHHHHhhCCCCCCCEEEECCEE
Confidence 5789999999999998877653 2234445554321 111 1233344566679999888754
No 242
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.23 E-value=80 Score=25.34 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhccCC
Q 019491 197 QLCIASLVVAALSTSYSSI 215 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~ 215 (340)
.++.+++++++++++..+.
T Consensus 47 ~~v~~vl~iL~~~Gii~DP 65 (84)
T PF04531_consen 47 NIVNAVLTILVILGIINDP 65 (84)
T ss_pred HHHHHHHHHHHHheeeeCC
Confidence 3455555666666666653
No 243
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=42.78 E-value=59 Score=33.20 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=43.1
Q ss_pred eEEEccCCCHHHHHHHHH-----HhHHhhcc-------CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCE--E
Q 019491 254 AKMYGAFWCSHCLEQKQM-----FGSEAVKQ-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~l-----fgk~A~~~-------l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~--~ 317 (340)
.++|+.|==.+=-.||+. +.+.+.+- +.-||-.++ .++.++.|+..-++..+ +|+ .
T Consensus 55 ~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--------~klAKKLgv~E~~SiyVfkd~~~IE 126 (383)
T PF01216_consen 55 VLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--------AKLAKKLGVEEEGSIYVFKDGEVIE 126 (383)
T ss_dssp EEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--------HHHHHHHT--STTEEEEEETTEEEE
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--------HHHHHhcCccccCcEEEEECCcEEE
Confidence 446777766665555543 44544332 234665543 69999999999999766 787 6
Q ss_pred eeCCCCHHHHHHHh
Q 019491 318 LSGEQDLSDLAKAS 331 (340)
Q Consensus 318 y~G~r~l~~La~~s 331 (340)
|.|.++.+.|.+|.
T Consensus 127 ydG~~saDtLVeFl 140 (383)
T PF01216_consen 127 YDGERSADTLVEFL 140 (383)
T ss_dssp E-S--SHHHHHHHH
T ss_pred ecCccCHHHHHHHH
Confidence 99999999999875
No 244
>PRK10853 putative reductase; Provisional
Probab=39.99 E-value=40 Score=28.52 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=32.5
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCc
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 306 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~ 306 (340)
+++||-|-|.-|++.+..+.+. .....++|--.++... ....+++++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s~-~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLDS-ELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcCH-HHHHHHHHHcCHH
Confidence 5799999999999999999763 3333344443332211 1245667766654
No 245
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=39.35 E-value=93 Score=31.12 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=53.7
Q ss_pred hHHHHHHhhccc--CeEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEECCE
Q 019491 241 FALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 316 (340)
Q Consensus 241 ~~~~la~~L~~~--g~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~ 316 (340)
-+..-+.||..+ .++.|-=-.||.|-+.+.+..-- .|+ .||.+|-- + +.-+=-..+-.|-+.++|+
T Consensus 76 hae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDyh---gisY~VVEVnpV~-r------~eIk~SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 76 HAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDYH---GISYAVVEVNPVL-R------QEIKWSSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhhc---CCceEEEEecchh-h------hhccccccccccEEEeccc
Confidence 345568888888 78899889999999999877643 354 48887642 1 1111125667899999886
Q ss_pred E---------------eeCCCCHHHHHHH
Q 019491 317 V---------------LSGEQDLSDLAKA 330 (340)
Q Consensus 317 ~---------------y~G~r~l~~La~~ 330 (340)
. -.-.++++|++++
T Consensus 146 qm~dSsvIIs~laTyLq~~~q~l~eiiq~ 174 (370)
T KOG3029|consen 146 QMVDSSVIISLLATYLQDKRQDLGEIIQM 174 (370)
T ss_pred eechhHHHHHHHHHHhccCCCCHHHHHHh
Confidence 2 1344667777665
No 246
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.96 E-value=17 Score=28.12 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=19.6
Q ss_pred CCHHHHHHH--HHHhHHhhccCceeECCCCCC
Q 019491 261 WCSHCLEQK--QMFGSEAVKQLNYVECFPDGY 290 (340)
Q Consensus 261 WCpHC~~qk--~lfgk~A~~~l~yVeC~~~g~ 290 (340)
=||.|+.|- ++|.+. .++.|||..-|+
T Consensus 12 ~CP~C~~~Dtl~mW~En---~ve~vECV~CG~ 40 (66)
T COG3529 12 VCPACQAQDTLAMWREN---NVEIVECVKCGH 40 (66)
T ss_pred CCcccchhhHHHHHHhc---CCceEehhhcch
Confidence 599999995 467764 567788876554
No 247
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=38.59 E-value=6 Score=38.07 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.9
Q ss_pred ccCCCHHHHHH
Q 019491 258 GAFWCSHCLEQ 268 (340)
Q Consensus 258 gA~WCpHC~~q 268 (340)
+.+|||+||+|
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46799999864
No 248
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=38.14 E-value=1.2e+02 Score=22.74 Aligned_cols=60 Identities=3% Similarity=-0.105 Sum_probs=36.1
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCC-CCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~-g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
+++|+.+.||.|++..-...+ .......++-+.. +.++ ..++-+-..-...|+++.||+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e-~gl~~e~~~v~~~~~~~~---~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAE-KGLRCEEYDVSLPLSEHN---EPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHH-cCCCCEEEEecCCcCccC---CHHHHHhCcCCCCCEEEECCEE
Confidence 468999999999888765544 2223344554432 1111 2344444556668999888764
No 249
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.08 E-value=79 Score=32.76 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=56.8
Q ss_pred HHHHhhcccC----eEEEccCCCHHHHHHHHHHhHHhh--ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 244 SLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 244 ~la~~L~~~g----~~~YgA~WCpHC~~qk~lfgk~A~--~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
++.++++.+. +.-|..-.|-.|-+.-+-..--+. -+|.-+-.+ | .-+++.-++.+|-+.||..+||+.
T Consensus 106 ~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id--G----a~Fq~Evear~IMaVPtvflnGe~ 179 (520)
T COG3634 106 DVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID--G----ALFQDEVEARNIMAVPTVFLNGEE 179 (520)
T ss_pred HHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec--c----hhhHhHHHhccceecceEEEcchh
Confidence 4445555544 667889999999998876654221 134333332 1 125677888999999999999996
Q ss_pred e-eCCCCHHHHHHHhC
Q 019491 318 L-SGEQDLSDLAKASG 332 (340)
Q Consensus 318 y-~G~r~l~~La~~sg 332 (340)
+ +|..++|++..-.+
T Consensus 180 fg~GRmtleeilaki~ 195 (520)
T COG3634 180 FGQGRMTLEEILAKID 195 (520)
T ss_pred hcccceeHHHHHHHhc
Confidence 4 88899999865443
No 250
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=37.23 E-value=3.1e+02 Score=29.24 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=37.5
Q ss_pred CCCCCCCCccccccccchhHHHHHHHHH---HHh--hcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019491 89 DAFCPIGGASCGDVLNSDYAVVFVAVLG---LLL--ARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILS 156 (340)
Q Consensus 89 ~~~C~i~~~sC~~VL~S~ya~vfvaalg---~ll--~~~~~~~~~~~~~~~~~L~~~s~~~~vfS~yL~yil~ 156 (340)
...|+. .|..-+-|=.-++++.++| +++ ....+| .+ ..+| +++...++..+|+.||.|+.-
T Consensus 123 ~~~C~~---~CeGllislafKLliLlig~WAlf~R~~~a~lP-Ri--f~fR-a~ll~Lvfl~~~syWLFY~vr 188 (505)
T PF06638_consen 123 LEPCGA---ECEGLLISLAFKLLILLIGTWALFFRRPRADLP-RI--FVFR-ALLLVLVFLFLFSYWLFYGVR 188 (505)
T ss_pred ccccCC---cccceeHHHHHHHHHHHHHHHHHhcCcccCCCc-hh--HHHH-HHHHHHHHHHHHHHHHHhhhe
Confidence 467886 5999888877777655554 444 233444 11 1233 344444567789999999763
No 251
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=36.42 E-value=58 Score=26.97 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=32.0
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~ 304 (340)
+++||-|-|+-|++.+..+.+. ...+.++|-..++... .....+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~~~t~-~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-GIEPEIVEYLKTPPTA-AELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEecccCCcCH-HHHHHHHHHcC
Confidence 4789999999999999988763 3344456654443222 23455666555
No 252
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=36.36 E-value=58 Score=31.53 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=46.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhcc--CceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CCEE----------ee
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQV----------LS 319 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~--l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG~~----------y~ 319 (340)
++.+|-+-++.|+.+-..+...|.+. +-||....+. ..+..++.+++.||+.+ ||+. ..
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~-------~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASK-------CPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECG-------CCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhc-------cCcccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 56788999999999999999887554 4466554321 12466789999999887 8862 22
Q ss_pred CCCCHHHHHHHhCCC
Q 019491 320 GEQDLSDLAKASGFP 334 (340)
Q Consensus 320 G~r~l~~La~~sg~~ 334 (340)
...+.++|..+.--.
T Consensus 223 ~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEY 237 (265)
T ss_dssp TT--HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHc
Confidence 245566676665433
No 253
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=35.99 E-value=7.6 Score=37.96 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred ccCCCHHHHH
Q 019491 258 GAFWCSHCLE 267 (340)
Q Consensus 258 gA~WCpHC~~ 267 (340)
+.+||||||+
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4679999974
No 254
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=35.97 E-value=61 Score=28.13 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----Cccc
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSG-----ATCS 165 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~-----a~C~ 165 (340)
+|.++.+.+.++.+.+.|.|++|...... + +.|.
T Consensus 2 ~~~~~~~~~l~~iGl~~S~yl~~~~~~~~-~~~~~~~~C~ 40 (142)
T smart00756 2 RWTRWILLILGLIGLLASLYLTYEKLTLL-EDPDYVASCD 40 (142)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCcCCcCC
Confidence 67788888899999999999999988765 4 6787
No 255
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=35.41 E-value=14 Score=36.93 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHhhcc--cCeEEEccCCCHHHHHHHHHHhHHh--hccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCE---E
Q 019491 246 AKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEA--VKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQ---V 317 (340)
Q Consensus 246 a~~L~~--~g~~~YgA~WCpHC~~qk~lfgk~A--~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~---~ 317 (340)
+.|.++ .-.+.|||-|||-=+...+.|.-.. +..|.---.+ +-.+ ....-..+|+.+.|+... |-+ +
T Consensus 70 ~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~ve-e~~~----lpsv~s~~~~~~~ps~~~~n~t~~~~ 144 (319)
T KOG2640|consen 70 AIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVE-ESQA----LPSVFSSYGIHSEPSNLMLNQTCPAS 144 (319)
T ss_pred hhccccCCcccccchhcccCcccccCcccchhhhhccccccccHH-HHhh----cccchhccccccCCcceeeccccchh
Confidence 666633 3356788999984444444443211 1111111110 1101 235567789999999776 543 7
Q ss_pred eeCCCCHHHHHHHh
Q 019491 318 LSGEQDLSDLAKAS 331 (340)
Q Consensus 318 y~G~r~l~~La~~s 331 (340)
|-|.|+++.|+++.
T Consensus 145 ~~~~r~l~sLv~fy 158 (319)
T KOG2640|consen 145 YRGERDLASLVNFY 158 (319)
T ss_pred hcccccHHHHHHHH
Confidence 99999999998763
No 256
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=34.71 E-value=1.3e+02 Score=26.91 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=35.8
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~ 317 (340)
.+.|+.++||.|++..-.+.+ .......++.+.+ ++ ..+.=+.+=-.-.|+++.||..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e-~gl~~e~~~v~~~--~~---~~~~~~~nP~g~VPvL~~~g~~ 68 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAE-KGVSVEIEQVEKD--NL---PQDLIDLNPYQSVPTLVDRELT 68 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHH-CCCCCEEEeCCcc--cC---CHHHHHhCCCCCCCEEEECCEE
Confidence 689999999999998876654 2333444555443 11 1222222334558999988863
No 257
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=34.38 E-value=39 Score=32.69 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=51.1
Q ss_pred hHHHHHHhhcccC-eE-EEccCCCHHHHHHHHHHhHHh--hcc----CceeECCCCC----C---------CCCh-----
Q 019491 241 FALSLAKHLHAIG-AK-MYGAFWCSHCLEQKQMFGSEA--VKQ----LNYVECFPDG----Y---------RKGT----- 294 (340)
Q Consensus 241 ~~~~la~~L~~~g-~~-~YgA~WCpHC~~qk~lfgk~A--~~~----l~yVeC~~~g----~---------~~~~----- 294 (340)
..+.|+++++..- +. +|-|-|||.|..+.+.|.+.. +++ +--|.++... + ..+.
T Consensus 88 ~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlL 167 (261)
T PTZ00137 88 VQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLF 167 (261)
T ss_pred eEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEE
Confidence 3467777755433 33 345899999999877665421 111 1122222100 0 0000
Q ss_pred --hhHhhhhhCCCc-----ccceeEE---CCEE-------eeCCCCHHHHHHHh
Q 019491 295 --KIAKACSDAKIE-----GFPTWVI---NGQV-------LSGEQDLSDLAKAS 331 (340)
Q Consensus 295 --k~~~lC~~~~I~-----GyPTw~i---nG~~-------y~G~r~l~~La~~s 331 (340)
+..++++++|+. ..|+-+| +|+. ....|+.+|+.+..
T Consensus 168 sD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l 221 (261)
T PTZ00137 168 SDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLF 221 (261)
T ss_pred EcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 125789999985 4788554 5651 25568999988765
No 258
>PRK13599 putative peroxiredoxin; Provisional
Probab=33.80 E-value=29 Score=32.21 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.5
Q ss_pred EEEccCCCHHHHHHHHHHhH
Q 019491 255 KMYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk 274 (340)
.+|-|.|||.|..+.+.|.+
T Consensus 34 ~~~pa~~tpvCt~El~~l~~ 53 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFAR 53 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHH
Confidence 58899999999998766644
No 259
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=33.31 E-value=1.2e+02 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=27.0
Q ss_pred HhhhhhCCCc--ccceeEE-CCE--Ee---eCCCCHHHHHHHhC
Q 019491 297 AKACSDAKIE--GFPTWVI-NGQ--VL---SGEQDLSDLAKASG 332 (340)
Q Consensus 297 ~~lC~~~~I~--GyPTw~i-nG~--~y---~G~r~l~~La~~sg 332 (340)
..+-+.+||. +||+..+ |.+ +| .|..+.|.|.+|..
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 3577889995 4999887 222 55 59999999998864
No 260
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.63 E-value=6.5 Score=37.91 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=11.0
Q ss_pred ccCCCHHHHHHHHH
Q 019491 258 GAFWCSHCLEQKQM 271 (340)
Q Consensus 258 gA~WCpHC~~qk~l 271 (340)
..+|||+||+..++
T Consensus 254 ~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 254 GTHFCPQCQPLRPL 267 (269)
T ss_pred CcEECCCCcCCCCC
Confidence 46899999987654
No 261
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=32.40 E-value=1.9e+02 Score=21.05 Aligned_cols=58 Identities=10% Similarity=-0.015 Sum_probs=34.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE-CCEE
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 317 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i-nG~~ 317 (340)
.+.|+.+.||.|.+.+-.+... ...++ .++-+.. ++ ..+.=+...-...|+++. ||+.
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~-~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHET-GLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHh-CCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCCE
Confidence 3689999999999988766541 22333 4444432 11 122223345567899987 6643
No 262
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=31.44 E-value=2.4e+02 Score=21.59 Aligned_cols=70 Identities=13% Similarity=0.005 Sum_probs=46.1
Q ss_pred cccCeEEEccCCCHHHHHHHHHHhHHhh---ccCceeECCCCCCCCChhhHhhhhhCCCcccceeEE--CC----EEeeC
Q 019491 250 HAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG----QVLSG 320 (340)
Q Consensus 250 ~~~g~~~YgA~WCpHC~~qk~lfgk~A~---~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i--nG----~~y~G 320 (340)
.+.-++-|+..+++ ...+.|.+.|. ..+.+..+.. .++.++.+++. |+..+ +. ..|.|
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~---------~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g 83 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSD---------KEVAKKLKVKP-GSVVLFKPFEEEPVEYDG 83 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEECh---------HHHHHHcCCCC-CceEEeCCcccCCccCCC
Confidence 34446677799997 45566766542 2466777763 25555567765 77666 21 25999
Q ss_pred CCCHHHHHHHhC
Q 019491 321 EQDLSDLAKASG 332 (340)
Q Consensus 321 ~r~l~~La~~sg 332 (340)
..+.++|.+|.-
T Consensus 84 ~~~~~~l~~fi~ 95 (97)
T cd02981 84 EFTEESLVEFIK 95 (97)
T ss_pred CCCHHHHHHHHH
Confidence 999999999863
No 263
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=30.67 E-value=2e+02 Score=30.26 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=43.4
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhh--ccCc--eeECCCCCCCCChhhHhhhhhCCCcccceeEE---CCE----EeeCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VLSGE 321 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~--~~l~--yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~i---nG~----~y~G~ 321 (340)
-++.|..+-|..|.+++++..+-+. .+|. ++|... ..++.++++|+-.|+..| +|+ +|.|.
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~--------~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE--------EPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc--------chhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 4667878889999999999987542 2343 333322 247788899999999888 342 56665
Q ss_pred CC
Q 019491 322 QD 323 (340)
Q Consensus 322 r~ 323 (340)
=.
T Consensus 441 P~ 442 (555)
T TIGR03143 441 PS 442 (555)
T ss_pred Cc
Confidence 33
No 264
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=30.00 E-value=1.8e+02 Score=25.47 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 019491 136 ILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 181 (340)
Q Consensus 136 ~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~lt 181 (340)
.-...++.+..+|.|+-|++ .-.-|+.|+.--+..+.+.++.
T Consensus 12 ~aw~va~~a~~~sLy~q~v~----gl~PC~LCiyQRi~~~~l~l~~ 53 (135)
T PRK00611 12 FAWLISCIGTLMSIYYSYIL----NVEPCVLCYYQRICLFPLVVIL 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCCCchHHHHHHHHHHHHHHHH
Confidence 33444555667777777766 3579999999887777666643
No 265
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=28.31 E-value=79 Score=27.32 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.8
Q ss_pred hHhhhhhCCCcccceeEECCEE-eeCC-CCHHHHHHHhCCCCCCCC
Q 019491 296 IAKACSDAKIEGFPTWVINGQV-LSGE-QDLSDLAKASGFPEMSQP 339 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~inG~~-y~G~-r~l~~La~~sg~~g~~~~ 339 (340)
..++=++.|.+..|--.+||+. ..|. =+-+||++|+|...+.++
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~~ 106 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSELE 106 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGTT
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCccccc
Confidence 4577777899999999999994 3444 588999999998665543
No 266
>PF02600 DsbB: Disulfide bond formation protein DsbB; InterPro: IPR003752 Disulphide bonds contribute to folding, maturation, stability, and regulation of proteins, in particular those localized out of the cytosol. Oxidation of selected pairs of cysteines to disulphide in vivo requires cellular factors present in the bacterial periplasmic space or in the endoplasmic reticulum of eukaryotic cells [, ]. DsbB is a protein component of the pathway that leads to disulphide bond formation in periplasmic proteins of Escherichia coli and other bacteria. The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulphide bonds []. DsbB acts as a redox potential transducer across the cytoplasmic membrane. It is a membrane protein which spans the membrane four times with both the N- and C-termini of the protein are in the cytoplasm. Each of the periplasmic domains of the protein has two essential cysteines. The two cysteines in the first periplasmic domain are in a Cys-X-Y-Cys configuration that is characteristic of the active site of other proteins involved in disulphide bond formation, including DsbA and protein disulphide isomerase []. This entry also includes disulphide bond formation protein BdbC from Bacillus subtilis which functionally corresponds to the well-characterised E. coli DsbB []. ; GO: 0015035 protein disulfide oxidoreductase activity, 0016020 membrane; PDB: 2ZUP_B 3E9J_F 2ZUQ_D 2K74_A 2LEG_B 2HI7_B 2K73_A 2L0O_A 2L0M_A 2L0N_A ....
Probab=28.13 E-value=64 Score=28.02 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHH
Q 019491 131 SYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSAL 172 (340)
Q Consensus 131 ~~~~~~L~~~s~~~~vfS~yL~yil~f~ii~a~C~~Cl~Sav 172 (340)
|+.+..+..++.++.+++.|+-|++ .-.-|+.|+.--+
T Consensus 5 r~~~~l~~l~~~~~l~~A~~~q~~l----g~~PC~LC~~QR~ 42 (156)
T PF02600_consen 5 RRLWLLLALASLAALAGALYFQYVL----GLQPCPLCLYQRI 42 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT----TT---SHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----CCCCcHHHHHHHH
Confidence 5666677777777777776665554 4579999986443
No 267
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.91 E-value=1.2e+02 Score=24.52 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhC----CCcccceeEECCEEeeCCCCHHHHH
Q 019491 263 SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA----KIEGFPTWVINGQVLSGEQDLSDLA 328 (340)
Q Consensus 263 pHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~----~I~GyPTw~inG~~y~G~r~l~~La 328 (340)
-+|++.+.++... .|+|-|++-+. ++.. +...=+.. |-...|-.+|||+-.-|-.++.+|.
T Consensus 17 ~~~~~v~~lL~~k---~I~f~eiDI~~-d~~~-r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 17 KRQQEVLGFLEAK---KIEFEEVDISM-NEEN-RQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred HHHHHHHHHHHHC---CCceEEEecCC-CHHH-HHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 3788889888763 56665555432 1111 12222222 4466777888886555545555543
No 268
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=27.70 E-value=65 Score=28.64 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=10.6
Q ss_pred HHHHhhcccCeEEEc
Q 019491 244 SLAKHLHAIGAKMYG 258 (340)
Q Consensus 244 ~la~~L~~~g~~~Yg 258 (340)
-+.+||+.-.++++|
T Consensus 95 ~~~~~lhs~klk~~G 109 (141)
T PF10177_consen 95 FFSRYLHSDKLKYFG 109 (141)
T ss_pred cccccccccceeeec
Confidence 356788877777775
No 269
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=27.41 E-value=82 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.4
Q ss_pred eEEEccCCCHHHHHHHHHHhHH
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSE 275 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~ 275 (340)
+++||-|-|.-|++.+..+.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5799999999999999988653
No 270
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.29 E-value=42 Score=29.24 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.5
Q ss_pred HhhhhhCCCcccceeEE
Q 019491 297 AKACSDAKIEGFPTWVI 313 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~i 313 (340)
.+...+.||.|.||++|
T Consensus 159 ~~~a~~~gv~g~Ptfvv 175 (193)
T cd03025 159 QKLARELGINGFPTLVL 175 (193)
T ss_pred HHHHHHcCCCccCEEEE
Confidence 45567889999999999
No 271
>PF07343 DUF1475: Protein of unknown function (DUF1475); InterPro: IPR009943 This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=26.94 E-value=6e+02 Score=24.75 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccccchhHHHH-------HHHHHHHh-h-cccCCCcccchhH
Q 019491 63 YGWCAGIGGVGFLETTYLSYLKLTNSDAFCPIGGASCGDVLNSDYAVVF-------VAVLGLLL-A-RKSFPIGINESYG 133 (340)
Q Consensus 63 ~~~i~~La~iGll~T~YLT~~kl~~~~~~C~i~~~sC~~VL~S~ya~vf-------vaalg~ll-~-~~~~~~~~~~~~~ 133 (340)
.++.++++++|.+.-+-|.|.-++++.++=+- ..++ .||.... +.+++... . .++.. .+..
T Consensus 8 ~~lr~ifaaLg~~mLa~LVyt~itdG~pf~~r-----~~ll-TPWm~aTL~DfYin~v~~A~WI~ykE~nwl----ssi~ 77 (254)
T PF07343_consen 8 NGLRAIFAALGCLMLATLVYTIITDGLPFSAR-----AELL-TPWMVATLIDFYINFVAIAAWIAYKESNWL----SSIF 77 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-----cccc-ChHHHHHHHHHHHHHHHHHHHhhhccccHH----HHHH
Confidence 34566777778777776777777766555441 1233 5998876 33333332 1 22222 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019491 134 RLILLGSSTSMAAASAYFLYILS 156 (340)
Q Consensus 134 ~~~L~~~s~~~~vfS~yL~yil~ 156 (340)
|. +.+...+.+..+.|+.+.+.
T Consensus 78 Wi-vll~~lGsi~t~~Yl~i~l~ 99 (254)
T PF07343_consen 78 WI-VLLICLGSIATCAYLVIQLL 99 (254)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHH
Confidence 44 44445666788888887764
No 272
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.30 E-value=72 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHhHH
Q 019491 262 CSHCLEQKQMFGSE 275 (340)
Q Consensus 262 CpHC~~qk~lfgk~ 275 (340)
||.|+++-.++|++
T Consensus 72 CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 72 CPNCGKQTKMLGRV 85 (114)
T ss_pred CCCCCChHhhhchh
Confidence 77777666666664
No 273
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=26.26 E-value=2.5e+02 Score=20.11 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=34.6
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCC-CCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 318 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~-g~~~~~k~~~lC~~~~I~GyPTw~inG~~y 318 (340)
+.|+-+.|+.|.+.+-..... ......++.+.. +.+. ..+.=+...-...|+++.||+..
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~l 62 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK-GLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLVL 62 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc-CCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEEE
Confidence 578778888888877666553 333444455432 1111 12322334556799999887643
No 274
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=26.01 E-value=93 Score=26.60 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHhhc-----cCceeECCCCCCCCChhhHhhhhhCCCc----cccee-E-E-CCE---EeeCCCCHHHHH
Q 019491 264 HCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIE----GFPTW-V-I-NGQ---VLSGEQDLSDLA 328 (340)
Q Consensus 264 HC~~qk~lfgk~A~~-----~l~yVeC~~~g~~~~~k~~~lC~~~~I~----GyPTw-~-i-nG~---~y~G~r~l~~La 328 (340)
.-..+-.+|.+.|.+ .+.+|||.... .+++|++.+|. -=|.- . . ||. .|.-..+...+.
T Consensus 32 ~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e------~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv 105 (112)
T cd03067 32 SAEALLKLLSDVAQAVKGQGTIAWIDCGDSE------SRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMV 105 (112)
T ss_pred hHHHHHHHHHHHHHHhcCceeEEEEecCChH------HHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHH
Confidence 333444467664421 26799998432 36999999998 33432 2 1 674 677777777777
Q ss_pred HHh
Q 019491 329 KAS 331 (340)
Q Consensus 329 ~~s 331 (340)
.|.
T Consensus 106 ~Fl 108 (112)
T cd03067 106 AFL 108 (112)
T ss_pred HHh
Confidence 664
No 275
>PRK13191 putative peroxiredoxin; Provisional
Probab=25.83 E-value=48 Score=30.74 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=21.2
Q ss_pred HHHHHhhcc-cCeE-EEccCCCHHHHHHHHHHhH
Q 019491 243 LSLAKHLHA-IGAK-MYGAFWCSHCLEQKQMFGS 274 (340)
Q Consensus 243 ~~la~~L~~-~g~~-~YgA~WCpHC~~qk~lfgk 274 (340)
+.+.+.++. .-+. +|-|.|||.|....+.|.+
T Consensus 25 ~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~ 58 (215)
T PRK13191 25 IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAK 58 (215)
T ss_pred EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHH
Confidence 344443333 2343 8899999999998776655
No 276
>PRK06265 cobalt transport protein CbiM; Validated
Probab=25.71 E-value=1.1e+02 Score=28.01 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHH
Q 019491 166 YCLTSALLSFSLFFISLKEFSVEEIQKV 193 (340)
Q Consensus 166 ~Cl~Savis~~Lf~ltl~g~~~~d~~~~ 193 (340)
+|...|++++.++...+++.+|++..|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (199)
T PRK06265 12 VLAGGWVIAAAGVALGLRRLDEERIPLV 39 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhHHH
Confidence 3455555555555555555555544443
No 277
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=25.19 E-value=54 Score=28.56 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=36.9
Q ss_pred HHHHHHhhcc--cCeEEEccCCCHHHHHH-HHHHhHHh--hcc-----CceeECCCCCCCCChhhHhhhhhCCC-cccc
Q 019491 242 ALSLAKHLHA--IGAKMYGAFWCSHCLEQ-KQMFGSEA--VKQ-----LNYVECFPDGYRKGTKIAKACSDAKI-EGFP 309 (340)
Q Consensus 242 ~~~la~~L~~--~g~~~YgA~WCpHC~~q-k~lfgk~A--~~~-----l~yVeC~~~g~~~~~k~~~lC~~~~I-~GyP 309 (340)
.+.|.+.++. .-+.+|=+-|||.|..| .+-|.+.. +++ +--|-+++. . .+++.|++.++ ..||
T Consensus 20 ~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~--~---~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 20 PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP--F---VMKAWGKALGAKDKIR 93 (155)
T ss_pred eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH--H---HHHHHHHhhCCCCcEE
Confidence 4667765433 33557889999999999 66665532 111 223333322 1 25677887777 3566
No 278
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=24.83 E-value=1.1e+02 Score=23.14 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEEC-CEEe
Q 019491 260 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVL 318 (340)
Q Consensus 260 ~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~in-G~~y 318 (340)
+|||+|.+..-++... ......++.+..+... ....+ +...-...|+++.| |+..
T Consensus 14 ~~Sp~~~kv~~~L~~~-~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~l 69 (84)
T cd03038 14 AFSPNVWKTRLALNHK-GLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEVI 69 (84)
T ss_pred CcCChhHHHHHHHHhC-CCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCEE
Confidence 6999999998888763 2223344444321111 01223 33445678999887 6543
No 279
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.76 E-value=90 Score=29.23 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=28.8
Q ss_pred HhhhhhCCCcccceeEECCEEeeCCCCHHHHHHH
Q 019491 297 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 330 (340)
Q Consensus 297 ~~lC~~~~I~GyPTw~inG~~y~G~r~l~~La~~ 330 (340)
.+...+.|+=|-|||+++++.|=|-.-+.+|.+.
T Consensus 166 ~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea~ 199 (203)
T COG3917 166 TAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEAE 199 (203)
T ss_pred HHHHHhcCccCCCeEEECCeeeechhHHHHHHHH
Confidence 4667788999999999999999999888777653
No 280
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.63 E-value=15 Score=35.52 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.0
Q ss_pred ccCCCHHHHH
Q 019491 258 GAFWCSHCLE 267 (340)
Q Consensus 258 gA~WCpHC~~ 267 (340)
..+|||+||+
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4689999984
No 281
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=24.55 E-value=8.8 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.816 Sum_probs=18.1
Q ss_pred CCHHHHHHHH--HHhHHhhccCceeECCCCCC
Q 019491 261 WCSHCLEQKQ--MFGSEAVKQLNYVECFPDGY 290 (340)
Q Consensus 261 WCpHC~~qk~--lfgk~A~~~l~yVeC~~~g~ 290 (340)
-||+|+.|-. +|.++ .+.++||..=|+
T Consensus 10 ~CP~C~~~D~i~~~~e~---~ve~vECV~CGy 38 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWREN---GVEYVECVECGY 38 (71)
T ss_pred cCCCCcCccEEEEEEeC---CceEEEecCCCC
Confidence 5999999965 35443 367777765443
No 282
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.09 E-value=2e+02 Score=31.76 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHhhccchHH
Q 019491 144 MAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSVEE 189 (340)
Q Consensus 144 ~~vfS~yL~yil~f~ii~a~C~~Cl~Savis~~Lf~ltl~g~~~~d 189 (340)
|.+||++|+-+.+.. .-+|.+++-+..+-|.-=.++|+.+-|..
T Consensus 72 ~~~~~~~~~~~~~~~--d~~~~~~~p~~~~~~~~~~~v~~~~~~~~ 115 (697)
T PF09726_consen 72 GLAFSVFFVCIAFTS--DLICLFFIPVHWLFFAASTYVWVQYVWHT 115 (697)
T ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Confidence 567888888888774 67999999766665555566677776765
No 283
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=23.35 E-value=4.8e+02 Score=25.13 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 019491 172 LLSFSLFFISLKEFSVEEIQKVLGVQLCIASL 203 (340)
Q Consensus 172 vis~~Lf~ltl~g~~~~d~~~~~~~~~~v~~~ 203 (340)
++++.|..+++.-.+|.+.-+..+.=.+++.+
T Consensus 66 l~s~lmv~iaf~~~~~~~~~k~~~~fy~~sf~ 97 (293)
T PF03419_consen 66 LISVLMVLIAFGPKRWRQFIKALLIFYLVSFL 97 (293)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 55666666666666788877765433333333
No 284
>PRK10026 arsenate reductase; Provisional
Probab=23.11 E-value=1.4e+02 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=31.4
Q ss_pred CeEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCC
Q 019491 253 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 305 (340)
Q Consensus 253 g~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I 305 (340)
.+++|+-|-|.-|++.++.+.+. .....++|--.+.... ....++.++.|.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-gi~~~~~d~~~~ppt~-~eL~~~l~~~g~ 53 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-GTEPTIIHYLETPPTR-DELVKLIADMGI 53 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-CCCcEEEeeeCCCcCH-HHHHHHHHhCCC
Confidence 36799999999999999998763 3333444443332211 124555665553
No 285
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.89 E-value=1.5e+02 Score=25.18 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=30.5
Q ss_pred eEEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCC
Q 019491 254 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 304 (340)
Q Consensus 254 ~~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~ 304 (340)
++.|+-|-|.-|++.+..|.+. .....++|--.++...+ ...+++++.|
T Consensus 3 itiy~~p~C~t~rka~~~L~~~-gi~~~~~~y~~~~~s~~-eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH-GIEYTFIDYLKTPPSRE-ELKKILSKLG 51 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEEEeecCCCCHH-HHHHHHHHcC
Confidence 6789999999999999999874 22223344443432221 1445555555
No 286
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=22.71 E-value=19 Score=34.76 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.5
Q ss_pred EccCCCHHHHH
Q 019491 257 YGAFWCSHCLE 267 (340)
Q Consensus 257 YgA~WCpHC~~ 267 (340)
=..+|||+||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 34789999984
No 287
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=22.61 E-value=1.1e+02 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=24.8
Q ss_pred hHhhhhhCCCcccceeEE--CCE---EeeCCCCHHH
Q 019491 296 IAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSD 326 (340)
Q Consensus 296 ~~~lC~~~~I~GyPTw~i--nG~---~y~G~r~l~~ 326 (340)
..++-.++|+..+|++.+ +|+ ..+|.|+=++
T Consensus 71 e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred HHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 468899999999999887 887 5788887654
No 288
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=22.59 E-value=1.7e+02 Score=24.20 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHhHHh--hc--cCceeECCCCCCCCChhhHhhhhhCCCcc----cceeEE---CCEEe--eCCC-CHHHHHHHh
Q 019491 267 EQKQMFGSEA--VK--QLNYVECFPDGYRKGTKIAKACSDAKIEG----FPTWVI---NGQVL--SGEQ-DLSDLAKAS 331 (340)
Q Consensus 267 ~qk~lfgk~A--~~--~l~yVeC~~~g~~~~~k~~~lC~~~~I~G----yPTw~i---nG~~y--~G~r-~l~~La~~s 331 (340)
+.++.|.+-| ++ ++.+|=.+.+. ....-+..|++. +|+..| ++++| .++. +.|.|.+|.
T Consensus 35 ~~~~~~~~vAk~fk~gki~Fv~~D~~~------~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 35 YWRNRVLKVAKDFPDRKLNFAVADKED------FSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred HHHHHHHHHHHHCcCCeEEEEEEcHHH------HHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHH
Confidence 3455555544 33 56655555442 224567789985 999888 45677 5666 789998875
No 289
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=22.52 E-value=2.1e+02 Score=25.75 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=33.5
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeE-ECCEE
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWV-INGQV 317 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~-inG~~ 317 (340)
|.|+.+.||.|.+.+-.+... ......+++..+. . ...-+...-...|+++ .||+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~-gl~~e~~~~~~~~-~-----~~~~~~np~g~vP~l~~~~g~~ 57 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLK-NIPVEKHVLLNDD-E-----ETPIRMIGAKQVPILQKDDGRA 57 (209)
T ss_pred CeecCCCCChHHHHHHHHHHc-CCCeEEEECCCCc-c-----hhHHHhcCCCCcceEEeeCCeE
Confidence 468888999999988877653 2223345554331 1 1223333456689998 46654
No 290
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=21.15 E-value=4.5e+02 Score=21.30 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=9.3
Q ss_pred HHhhccchHHHHH
Q 019491 180 ISLKEFSVEEIQK 192 (340)
Q Consensus 180 ltl~g~~~~d~~~ 192 (340)
+++.-||+.|.|+
T Consensus 63 lal~vRRlhD~G~ 75 (120)
T PF05656_consen 63 LALTVRRLHDIGR 75 (120)
T ss_pred HHHHhhhhhcCCC
Confidence 5566678888776
No 291
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=20.67 E-value=2.5e+02 Score=20.41 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=34.7
Q ss_pred EEEccCCCHHHHHHHHHHhHHhhccCceeECCCCCCCCChhhHhhhhhCCCcccceeEECCEEe
Q 019491 255 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVL 318 (340)
Q Consensus 255 ~~YgA~WCpHC~~qk~lfgk~A~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~GyPTw~inG~~y 318 (340)
+.|+.+.|+.|++.+-++.+. ......++.+..... ..+.-+...-...|+++.+|...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~~~~~~~~----~~~~~~~~p~~~vP~L~~~~~~l 60 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADA-GVEYEDVRITYEEWP----ELDLKPTLPFGQLPVLEIDGKKL 60 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHC-CCCcEEEEeCHHHhh----hhhhccCCcCCCCCEEEECCEEE
Confidence 567788899999888777652 223344555432110 11122234455689998887653
No 292
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=20.20 E-value=2.2e+02 Score=22.91 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=47.2
Q ss_pred EccCCCHHHHHHHHHHhHHh-hccCceeECCCCCCCCChhhHhhhhhCCCcc--cceeE--E-CCE-EeeCCCCHHHHHH
Q 019491 257 YGAFWCSHCLEQKQMFGSEA-VKQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWV--I-NGQ-VLSGEQDLSDLAK 329 (340)
Q Consensus 257 YgA~WCpHC~~qk~lfgk~A-~~~l~yVeC~~~g~~~~~k~~~lC~~~~I~G--yPTw~--i-nG~-~y~G~r~l~~La~ 329 (340)
||=-+||=|....+...+.. ...+.+++...+. ..++.++.+++. .-+.. + +|+ .|.|..-+..+.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEP------DQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChh------hhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 34678999999999887643 3568899984321 124455566542 33322 3 786 8999998888877
Q ss_pred HhCC
Q 019491 330 ASGF 333 (340)
Q Consensus 330 ~sg~ 333 (340)
.++.
T Consensus 76 ~~~~ 79 (114)
T PF04134_consen 76 RLPG 79 (114)
T ss_pred HcCc
Confidence 7654
Done!