Query 019492
Match_columns 340
No_of_seqs 179 out of 1596
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 70.2 4.9 0.00017 27.4 3.7 30 144-173 16-45 (56)
2 1wfl_A Zinc finger protein 216 58.6 15 0.00051 26.5 4.6 40 146-186 24-68 (74)
3 1x4u_A Zinc finger, FYVE domai 55.4 6.5 0.00022 28.9 2.3 24 147-170 14-39 (84)
4 1z2q_A LM5-1; membrane protein 55.1 6.6 0.00022 28.9 2.3 24 147-170 21-46 (84)
5 1wfk_A Zinc finger, FYVE domai 53.2 8.4 0.00029 28.7 2.7 25 146-170 8-34 (88)
6 3j21_g 50S ribosomal protein L 52.5 6.3 0.00022 26.4 1.7 28 146-173 13-40 (51)
7 2yw8_A RUN and FYVE domain-con 52.4 7.1 0.00024 28.6 2.1 25 147-171 19-45 (82)
8 1wfl_A Zinc finger protein 216 51.5 15 0.00051 26.6 3.6 46 7-57 14-59 (74)
9 1vfy_A Phosphatidylinositol-3- 49.2 7.2 0.00025 27.8 1.7 24 148-171 12-37 (73)
10 1joc_A EEA1, early endosomal a 47.1 8.5 0.00029 30.6 2.0 24 147-170 69-94 (125)
11 1pft_A TFIIB, PFTFIIBN; N-term 46.4 14 0.00047 24.1 2.6 41 17-57 4-47 (50)
12 3j20_Y 30S ribosomal protein S 45.3 5.1 0.00017 26.7 0.3 28 18-45 19-46 (50)
13 2k4x_A 30S ribosomal protein S 43.6 5.8 0.0002 27.0 0.4 29 18-46 18-46 (55)
14 1dvp_A HRS, hepatocyte growth 42.5 10 0.00035 33.0 1.9 25 147-171 161-187 (220)
15 3bvo_A CO-chaperone protein HS 39.9 13 0.00044 32.2 2.1 31 17-48 9-39 (207)
16 1wg2_A Zinc finger (AN1-like) 39.6 23 0.0008 24.8 3.0 35 17-56 14-48 (64)
17 3t7l_A Zinc finger FYVE domain 39.3 14 0.00047 27.5 2.0 25 147-171 20-46 (90)
18 1wfh_A Zinc finger (AN1-like) 38.5 24 0.00082 24.7 2.9 38 14-56 11-48 (64)
19 1y02_A CARP2, FYVE-ring finger 37.8 10 0.00035 30.0 1.1 22 148-169 20-43 (120)
20 1wfp_A Zinc finger (AN1-like) 37.2 38 0.0013 24.4 3.9 38 14-56 21-58 (74)
21 2dkt_A Ring finger and CHY zin 36.2 14 0.00048 30.2 1.6 43 144-186 80-126 (143)
22 3zyq_A Hepatocyte growth facto 34.7 15 0.00051 32.2 1.7 24 147-170 164-189 (226)
23 1dl6_A Transcription factor II 31.2 42 0.0014 22.7 3.2 39 20-58 13-54 (58)
24 2c6a_A Ubiquitin-protein ligas 27.3 39 0.0013 22.0 2.2 25 145-169 11-35 (46)
25 2cr8_A MDM4 protein; ZF-ranbp 26.6 46 0.0016 22.1 2.5 26 144-169 8-33 (53)
26 1gh9_A 8.3 kDa protein (gene M 25.5 27 0.00091 25.0 1.4 29 19-49 5-33 (71)
27 2dkt_A Ring finger and CHY zin 22.6 15 0.00053 29.9 -0.4 33 147-179 98-136 (143)
28 3u5e_m 60S ribosomal protein L 21.8 36 0.0012 26.6 1.7 24 147-170 93-118 (128)
29 1r79_A Diacylglycerol kinase, 21.1 1.1E+02 0.0038 22.3 4.1 31 18-48 38-68 (84)
30 3arc_T Photosystem II reaction 21.0 1.4E+02 0.0049 17.8 4.0 14 116-129 17-30 (32)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=70.24 E-value=4.9 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.2
Q ss_pred CCCceeccCCCCCCCCCcccccccCccccc
Q 019492 144 LENYTFCHYCSKPKSPRTHHCRSCGMCVLD 173 (340)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 173 (340)
..+.+.|..|...-|+|+..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 345789999999999999999999865544
No 2
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.59 E-value=15 Score=26.54 Aligned_cols=40 Identities=25% Similarity=0.557 Sum_probs=24.4
Q ss_pred CceeccCCCCCCCCCcccccccCc-----ccccccccCcccccccc
Q 019492 146 NYTFCHYCSKPKSPRTHHCRSCGM-----CVLDMDHHCPFIGNCVG 186 (340)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~-----CV~~~DHHC~Wi~nCIG 186 (340)
....|..|+.....=...|+ |+. -..--||.|++--.=.|
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 35689999876433347777 664 22333888887544333
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.38 E-value=6.5 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=18.1
Q ss_pred ceeccCCCCC--CCCCcccccccCcc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMC 170 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (340)
...|..|+.. .-.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4568888754 55788999999873
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.08 E-value=6.6 Score=28.89 Aligned_cols=24 Identities=38% Similarity=0.873 Sum_probs=18.5
Q ss_pred ceeccCCCCC--CCCCcccccccCcc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMC 170 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (340)
...|..|+.. .-.|-|||+.||+-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcE
Confidence 4678888764 45688999999874
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=53.16 E-value=8.4 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.7
Q ss_pred CceeccCCCCC--CCCCcccccccCcc
Q 019492 146 NYTFCHYCSKP--KSPRTHHCRSCGMC 170 (340)
Q Consensus 146 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (340)
+...|..|+.. .-.|-|||+.||+-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 34578888764 45788999999873
No 6
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.52 E-value=6.3 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=24.2
Q ss_pred CceeccCCCCCCCCCcccccccCccccc
Q 019492 146 NYTFCHYCSKPKSPRTHHCRSCGMCVLD 173 (340)
Q Consensus 146 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 173 (340)
..+.|..|....|+++..|+.||.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 5689999999999999999999875444
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.40 E-value=7.1 Score=28.56 Aligned_cols=25 Identities=48% Similarity=0.984 Sum_probs=18.5
Q ss_pred ceeccCCCCC--CCCCcccccccCccc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMCV 171 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (340)
...|..|+.. .-.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 4578888754 456889999998843
No 8
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.48 E-value=15 Score=26.55 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=32.3
Q ss_pred cceeeeccCCCCccccccccccccCCCCCccceeeccceecCCCCCccccc
Q 019492 7 EHYVTTIDKDNEPTCWGCGLHLVLPSYTPTFKCGWCGAITSLNLQKHESKW 57 (340)
Q Consensus 7 ~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 57 (340)
+..+..-+...-..|+.|+..+-+ -.|+|. |+..=..+.|-|+...
T Consensus 14 ~~~~~~~~k~~~nRC~~CrKkvgL----~gf~Cr-Cg~~FCs~HRy~e~H~ 59 (74)
T 1wfl_A 14 EEKAPELPKPKKNRCFMCRKKVGL----TGFDCR-CGNLFCGLHRYSDKHN 59 (74)
T ss_dssp CCCCCCCCCSCTTBCSSSCCBCGG----GCEECT-TSCEECSSSCSTTTTT
T ss_pred cccCcccCCCcCCcChhhCCcccc----cCeecC-CCCEechhcCCCccCC
Confidence 333444444456789999998765 359999 9988877777666543
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.20 E-value=7.2 Score=27.83 Aligned_cols=24 Identities=50% Similarity=0.948 Sum_probs=17.9
Q ss_pred eeccCCCCC--CCCCcccccccCccc
Q 019492 148 TFCHYCSKP--KSPRTHHCRSCGMCV 171 (340)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (340)
..|..|+.. .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888764 456889999999843
No 10
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.12 E-value=8.5 Score=30.61 Aligned_cols=24 Identities=42% Similarity=0.875 Sum_probs=18.3
Q ss_pred ceeccCCCCC--CCCCcccccccCcc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMC 170 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (340)
...|..|+.. .-.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4578888764 45788999999973
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=46.36 E-value=14 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCcccccccc-ccccCCCCCccceeeccceecCCC--CCccccc
Q 019492 17 NEPTCWGCGL-HLVLPSYTPTFKCGWCGAITSLNL--QKHESKW 57 (340)
Q Consensus 17 ~~~~c~~c~~-~~~~~~~~~~~~c~~~~~~~~~~~--~~~~~~~ 57 (340)
....|-.||. .|..-.-+....|.-||.+-.... ..|+.|.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccccccCCcccc
Confidence 4457999998 777655556789999999886554 4455444
No 12
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.29 E-value=5.1 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.624 Sum_probs=23.2
Q ss_pred CccccccccccccCCCCCccceeeccce
Q 019492 18 EPTCWGCGLHLVLPSYTPTFKCGWCGAI 45 (340)
Q Consensus 18 ~~~c~~c~~~~~~~~~~~~~~c~~~~~~ 45 (340)
...|..||..+++.+-.+...|+-||-.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCE
Confidence 4679999999998777788899999854
No 13
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=43.65 E-value=5.8 Score=26.96 Aligned_cols=29 Identities=28% Similarity=0.667 Sum_probs=24.7
Q ss_pred CccccccccccccCCCCCccceeecccee
Q 019492 18 EPTCWGCGLHLVLPSYTPTFKCGWCGAIT 46 (340)
Q Consensus 18 ~~~c~~c~~~~~~~~~~~~~~c~~~~~~~ 46 (340)
-..|.-||..+++++-.+.+.|+-|+-..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 46799999999998777889999998764
No 14
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.50 E-value=10 Score=33.00 Aligned_cols=25 Identities=40% Similarity=0.921 Sum_probs=18.3
Q ss_pred ceeccCCCCC--CCCCcccccccCccc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMCV 171 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (340)
...|..|+.. .-.|-|||+.||+-+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3688888754 446889999998743
No 15
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=39.92 E-value=13 Score=32.21 Aligned_cols=31 Identities=35% Similarity=0.793 Sum_probs=21.2
Q ss_pred CCccccccccccccCCCCCccceeeccceecC
Q 019492 17 NEPTCWGCGLHLVLPSYTPTFKCGWCGAITSL 48 (340)
Q Consensus 17 ~~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~ 48 (340)
....||.||...- |...+.+-|.-|+.+..+
T Consensus 9 ~~~~Cw~C~~~~~-~~~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 9 NYPRCWNCGGPWG-PGREDRFFCPQCRALQAP 39 (207)
T ss_dssp --CBCSSSCCBCC-SSCSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCCCCcc-cccccccccccccccCCC
Confidence 4678999997521 234578889999887644
No 16
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.59 E-value=23 Score=24.78 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=27.6
Q ss_pred CCccccccccccccCCCCCccceeeccceecCCCCCcccc
Q 019492 17 NEPTCWGCGLHLVLPSYTPTFKCGWCGAITSLNLQKHESK 56 (340)
Q Consensus 17 ~~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 56 (340)
.-..|++|+..|-+ ..|+| .|+..--...|-|+.-
T Consensus 14 ~~~rC~~C~kkvgl----~~f~C-rCg~~FC~~HR~~e~H 48 (64)
T 1wg2_A 14 PNNRCFSCNKKVGV----MGFKC-KCGSTFCGSHRYPEKH 48 (64)
T ss_dssp CSCSCTTTCCCCTT----SCEEC-TTSCEECSSSCSSTTT
T ss_pred cCCcChhhCCcccc----cCeEe-ecCCEecccCCCcccc
Confidence 44689999999887 47999 8999887777666544
No 17
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.33 E-value=14 Score=27.50 Aligned_cols=25 Identities=36% Similarity=0.816 Sum_probs=18.1
Q ss_pred ceeccCCCCC--CCCCcccccccCccc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMCV 171 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 171 (340)
...|..|+.. .-.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4578888753 445789999998743
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.55 E-value=24 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.3
Q ss_pred cCCCCccccccccccccCCCCCccceeeccceecCCCCCcccc
Q 019492 14 DKDNEPTCWGCGLHLVLPSYTPTFKCGWCGAITSLNLQKHESK 56 (340)
Q Consensus 14 ~~~~~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 56 (340)
+...-..|++|+-.+-+ ..|+| .|+..--...|-|+.-
T Consensus 11 ~k~~~~rC~~C~kkvgl----~~f~C-rCg~~FC~~HRy~e~H 48 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGL----TGFMC-RCGTTFCGSHRYPEVH 48 (64)
T ss_dssp CCSSCCCCTTTCCCCCT----TCEEC-SSSCEECTTTCSTTTT
T ss_pred CCCcCCcChhhCCccCc----cCEEe-ecCCEeccccCCcccC
Confidence 34556789999999887 47999 7998887777666554
No 19
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=37.76 E-value=10 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.682 Sum_probs=17.3
Q ss_pred eeccCCCCC--CCCCcccccccCc
Q 019492 148 TFCHYCSKP--KSPRTHHCRSCGM 169 (340)
Q Consensus 148 ~~C~~C~~~--kP~Rs~HC~~C~~ 169 (340)
..|..|+.. .-.|-|||+.||+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKK 43 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCC
T ss_pred CcccCcCCccccccccccCCCCCC
Confidence 578888754 4568899999998
No 20
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.21 E-value=38 Score=24.38 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=29.3
Q ss_pred cCCCCccccccccccccCCCCCccceeeccceecCCCCCcccc
Q 019492 14 DKDNEPTCWGCGLHLVLPSYTPTFKCGWCGAITSLNLQKHESK 56 (340)
Q Consensus 14 ~~~~~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 56 (340)
+......|+.|+-.+-+ ..|+| .|+..-....|-|+..
T Consensus 21 ~k~~~~RC~~C~kkvgL----~~f~C-rCg~~FCs~HRy~e~H 58 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGV----TGFKC-RCGSTFCGTHRYPESH 58 (74)
T ss_dssp TTCCCCBCSSSCCBCTT----TCEEC-TTSCEECTTTCSTTTS
T ss_pred CcccCccchhhcCcccc----cceEe-ccCCEeccccCCCcCC
Confidence 44556789999999887 47999 8998887776666544
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=36.16 E-value=14 Score=30.20 Aligned_cols=43 Identities=30% Similarity=0.667 Sum_probs=28.1
Q ss_pred CCCceeccCCCCCCC-CCcccccccCcccccc---cccCcccccccc
Q 019492 144 LENYTFCHYCSKPKS-PRTHHCRSCGMCVLDM---DHHCPFIGNCVG 186 (340)
Q Consensus 144 ~~~~~~C~~C~~~kP-~Rs~HC~~C~~CV~~~---DHHC~Wi~nCIG 186 (340)
.-...||..|+.+.+ ....||..||.|..+- =-||.=-|-|+.
T Consensus 80 ~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 80 LFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp BSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred cceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 344568999988743 3467888888887751 245666666653
No 22
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.69 E-value=15 Score=32.19 Aligned_cols=24 Identities=42% Similarity=0.916 Sum_probs=17.2
Q ss_pred ceeccCCCCC--CCCCcccccccCcc
Q 019492 147 YTFCHYCSKP--KSPRTHHCRSCGMC 170 (340)
Q Consensus 147 ~~~C~~C~~~--kP~Rs~HC~~C~~C 170 (340)
...|..|+.. .-.|-|||+.||+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v 189 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQI 189 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCE
Confidence 3578888743 34578999998874
No 23
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.17 E-value=42 Score=22.74 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=26.1
Q ss_pred ccccccc-ccccCCCCCccceeeccceecCCC--CCcccccc
Q 019492 20 TCWGCGL-HLVLPSYTPTFKCGWCGAITSLNL--QKHESKWF 58 (340)
Q Consensus 20 ~c~~c~~-~~~~~~~~~~~~c~~~~~~~~~~~--~~~~~~~~ 58 (340)
.|-.||. .|+.-.-+-.-.|.-||.+..... ..|+.|.|
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCS
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEeccccccCCccccc
Confidence 6999987 555433345678999999986553 45665543
No 24
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=27.26 E-value=39 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=20.4
Q ss_pred CCceeccCCCCCCCCCcccccccCc
Q 019492 145 ENYTFCHYCSKPKSPRTHHCRSCGM 169 (340)
Q Consensus 145 ~~~~~C~~C~~~kP~Rs~HC~~C~~ 169 (340)
.+.=.|..|+..-||--.||..|-+
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCC
T ss_pred cceEecccccccCCCccchhhHHHh
Confidence 3566899999998888889888765
No 25
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.58 E-value=46 Score=22.14 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=20.6
Q ss_pred CCCceeccCCCCCCCCCcccccccCc
Q 019492 144 LENYTFCHYCSKPKSPRTHHCRSCGM 169 (340)
Q Consensus 144 ~~~~~~C~~C~~~kP~Rs~HC~~C~~ 169 (340)
.++.=.|..|+..-||--+||..|-.
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCC
T ss_pred CcceeecccccccCCCccchhHHHHH
Confidence 34566899999888888888888765
No 26
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=25.49 E-value=27 Score=24.96 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=24.1
Q ss_pred ccccccccccccCCCCCccceeeccceecCC
Q 019492 19 PTCWGCGLHLVLPSYTPTFKCGWCGAITSLN 49 (340)
Q Consensus 19 ~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~~ 49 (340)
..|. ||..++....+.--+|- ||+.-.-.
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 4698 99999988888899997 99887444
No 27
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=22.57 E-value=15 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=22.6
Q ss_pred ceeccCC---CCCCCCCcccccccCcccc--ccc-ccCc
Q 019492 147 YTFCHYC---SKPKSPRTHHCRSCGMCVL--DMD-HHCP 179 (340)
Q Consensus 147 ~~~C~~C---~~~kP~Rs~HC~~C~~CV~--~~D-HHC~ 179 (340)
...|+.| +.-+...-.||..|+.|+. -.| |.|.
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 3455555 4555677999999999965 344 7774
No 28
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=21.85 E-value=36 Score=26.64 Aligned_cols=24 Identities=33% Similarity=0.868 Sum_probs=21.1
Q ss_pred ceeccCCCCCCCCCcccccc--cCcc
Q 019492 147 YTFCHYCSKPKSPRTHHCRS--CGMC 170 (340)
Q Consensus 147 ~~~C~~C~~~kP~Rs~HC~~--C~~C 170 (340)
.+.|..|...-|+|+..|+. ||..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 57999999999999999994 8763
No 29
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=21.10 E-value=1.1e+02 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=19.7
Q ss_pred CccccccccccccCCCCCccceeeccceecC
Q 019492 18 EPTCWGCGLHLVLPSYTPTFKCGWCGAITSL 48 (340)
Q Consensus 18 ~~~c~~c~~~~~~~~~~~~~~c~~~~~~~~~ 48 (340)
-+.|-.|+...--..--+.++|.||.+....
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~ 68 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHT 68 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECH
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHH
Confidence 3677777654321112378999999887743
No 30
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=21.01 E-value=1.4e+02 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=9.2
Q ss_pred HHHHHHhcCCCCCC
Q 019492 116 MFCLAAFHCPGASP 129 (340)
Q Consensus 116 ~y~~~~~~dPG~~~ 129 (340)
.++...++||...+
T Consensus 17 iFFAI~FRePPri~ 30 (32)
T 3arc_T 17 FFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHTSCCCCCC
T ss_pred HHHhhhhcCCCCCC
Confidence 35556689986554
Done!