Query 019494
Match_columns 340
No_of_seqs 263 out of 1514
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 3.6E-34 7.9E-39 267.9 25.5 199 8-222 84-337 (506)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.1E-32 4.5E-37 273.0 24.3 189 7-236 2-194 (481)
3 KOG1190 Polypyrimidine tract-b 100.0 2.3E-32 5E-37 253.2 19.1 215 7-235 150-392 (492)
4 KOG1190 Polypyrimidine tract-b 100.0 2.8E-33 6.1E-38 259.3 12.4 224 11-249 35-261 (492)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.4E-30 1.6E-34 254.7 23.9 198 9-219 98-354 (481)
6 KOG1456 Heterogeneous nuclear 100.0 2.3E-29 5E-34 231.0 19.1 208 11-261 35-254 (494)
7 TIGR01659 sex-lethal sex-letha 100.0 1.2E-28 2.5E-33 234.9 23.4 159 7-217 107-276 (346)
8 KOG0148 Apoptosis-promoting RN 100.0 5.6E-29 1.2E-33 220.1 19.2 171 10-219 65-241 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 2.9E-26 6.3E-31 233.3 23.0 180 8-219 179-367 (562)
10 TIGR01645 half-pint poly-U bin 99.9 2.5E-25 5.5E-30 223.1 25.9 169 5-216 105-284 (612)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.6E-25 1E-29 211.6 23.0 198 7-217 89-350 (352)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4E-25 8.8E-30 212.0 18.3 160 6-217 2-172 (352)
13 KOG0144 RNA-binding protein CU 99.9 1.4E-25 3.1E-30 209.5 12.2 165 8-219 35-209 (510)
14 TIGR01628 PABP-1234 polyadenyl 99.9 7.1E-24 1.5E-28 215.8 16.8 154 9-214 2-165 (562)
15 TIGR01622 SF-CC1 splicing fact 99.9 3.3E-23 7.2E-28 205.7 18.5 168 6-216 88-266 (457)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 3.9E-23 8.5E-28 207.0 18.4 163 6-218 137-309 (578)
17 KOG0145 RNA-binding protein EL 99.9 6.7E-23 1.5E-27 180.7 12.1 156 9-217 46-210 (360)
18 KOG1456 Heterogeneous nuclear 99.9 9.5E-22 2.1E-26 181.0 19.7 190 16-219 133-366 (494)
19 KOG0109 RNA-binding protein LA 99.9 2.1E-22 4.5E-27 180.2 10.7 145 8-215 3-149 (346)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-21 3.2E-26 195.7 16.5 150 8-216 59-222 (578)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.3E-21 7.2E-26 193.8 19.1 184 7-216 295-502 (509)
22 KOG0131 Splicing factor 3b, su 99.9 8.3E-22 1.8E-26 165.7 11.3 158 9-219 11-180 (203)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.2E-21 1.8E-25 191.0 19.1 184 5-216 173-375 (509)
24 TIGR01622 SF-CC1 splicing fact 99.9 2.5E-20 5.5E-25 185.1 19.1 196 7-217 186-449 (457)
25 KOG4206 Spliceosomal protein s 99.8 6.5E-20 1.4E-24 159.8 17.1 197 4-214 6-220 (221)
26 KOG0145 RNA-binding protein EL 99.8 8.4E-20 1.8E-24 161.2 16.9 192 9-215 129-357 (360)
27 KOG0123 Polyadenylate-binding 99.8 2.5E-19 5.4E-24 172.0 16.4 153 8-220 2-157 (369)
28 KOG0124 Polypyrimidine tract-b 99.8 3.2E-20 6.8E-25 170.6 8.1 162 6-213 112-287 (544)
29 KOG0127 Nucleolar protein fibr 99.8 1.8E-18 3.8E-23 166.3 14.6 174 9-216 7-196 (678)
30 KOG0127 Nucleolar protein fibr 99.8 5E-18 1.1E-22 163.2 17.6 195 5-216 118-378 (678)
31 KOG0110 RNA-binding protein (R 99.8 2.2E-18 4.8E-23 170.3 13.6 165 8-217 516-694 (725)
32 KOG0146 RNA-binding protein ET 99.8 1.9E-17 4.2E-22 146.8 14.4 80 133-218 283-367 (371)
33 TIGR01645 half-pint poly-U bin 99.7 9.7E-16 2.1E-20 154.3 20.6 74 7-89 204-283 (612)
34 KOG0123 Polyadenylate-binding 99.7 1.7E-16 3.7E-21 152.4 13.6 160 9-215 78-245 (369)
35 KOG0105 Alternative splicing f 99.7 1.2E-15 2.5E-20 128.9 15.0 169 5-203 4-178 (241)
36 KOG1457 RNA binding protein (c 99.7 6.4E-16 1.4E-20 134.1 13.5 188 8-203 35-276 (284)
37 KOG0147 Transcriptional coacti 99.6 5.4E-15 1.2E-19 142.9 14.7 201 4-219 275-531 (549)
38 KOG0144 RNA-binding protein CU 99.6 6.1E-15 1.3E-19 138.7 14.1 77 133-214 422-502 (510)
39 KOG0147 Transcriptional coacti 99.6 3.2E-15 6.9E-20 144.5 9.7 155 18-213 192-355 (549)
40 KOG0106 Alternative splicing f 99.6 4.7E-15 1E-19 130.6 7.6 162 7-211 1-166 (216)
41 PLN03134 glycine-rich RNA-bind 99.6 4.7E-14 1E-18 118.6 12.7 76 135-216 34-114 (144)
42 KOG0148 Apoptosis-promoting RN 99.5 4.1E-14 8.8E-19 126.1 9.6 78 135-216 60-142 (321)
43 KOG4205 RNA-binding protein mu 99.5 1.2E-13 2.6E-18 128.9 12.8 164 7-220 6-180 (311)
44 PF00076 RRM_1: RNA recognitio 99.5 1.8E-13 3.9E-18 99.7 7.1 66 140-209 1-70 (70)
45 PLN03134 glycine-rich RNA-bind 99.4 3.1E-13 6.7E-18 113.6 8.7 75 7-90 34-114 (144)
46 KOG0110 RNA-binding protein (R 99.4 1.9E-12 4.1E-17 128.7 14.3 184 11-214 389-596 (725)
47 KOG0107 Alternative splicing f 99.4 4.6E-13 1E-17 112.5 7.8 74 140-217 13-86 (195)
48 PF13893 RRM_5: RNA recognitio 99.4 9.4E-13 2E-17 92.5 8.1 56 154-213 1-56 (56)
49 KOG0124 Polypyrimidine tract-b 99.4 5.9E-12 1.3E-16 116.5 15.3 74 6-88 209-288 (544)
50 PF13893 RRM_5: RNA recognitio 99.4 1E-12 2.2E-17 92.3 7.1 56 22-87 1-56 (56)
51 TIGR01659 sex-lethal sex-letha 99.4 1.4E-12 3E-17 124.7 10.2 78 133-216 105-187 (346)
52 KOG0114 Predicted RNA-binding 99.4 7.7E-13 1.7E-17 101.9 6.4 79 135-219 18-98 (124)
53 KOG0122 Translation initiation 99.4 1.3E-12 2.8E-17 115.1 8.4 77 134-216 188-269 (270)
54 KOG0132 RNA polymerase II C-te 99.3 1.2E-10 2.6E-15 116.7 19.9 77 135-218 421-497 (894)
55 KOG0107 Alternative splicing f 99.3 3.3E-12 7.1E-17 107.4 6.8 74 7-90 10-85 (195)
56 PF14259 RRM_6: RNA recognitio 99.3 8.5E-12 1.8E-16 91.4 7.7 66 140-209 1-70 (70)
57 PLN03120 nucleic acid binding 99.3 1.1E-11 2.5E-16 112.0 10.1 72 140-216 7-80 (260)
58 PF00076 RRM_1: RNA recognitio 99.3 5E-12 1.1E-16 92.0 5.9 65 10-83 1-70 (70)
59 KOG0121 Nuclear cap-binding pr 99.3 7.5E-12 1.6E-16 100.0 6.7 72 135-212 36-112 (153)
60 KOG1548 Transcription elongati 99.3 2E-10 4.4E-15 105.9 15.5 185 7-216 134-352 (382)
61 KOG0120 Splicing factor U2AF, 99.3 3.4E-11 7.3E-16 118.0 11.0 178 9-216 291-492 (500)
62 KOG4211 Splicing factor hnRNP- 99.2 1.4E-10 3.1E-15 111.3 14.2 156 12-214 18-180 (510)
63 PLN03213 repressor of silencin 99.2 3.7E-11 8E-16 115.0 9.5 76 137-216 10-88 (759)
64 KOG4207 Predicted splicing fac 99.2 1.3E-11 2.8E-16 106.3 5.8 74 140-217 16-94 (256)
65 KOG0111 Cyclophilin-type pepti 99.2 7.7E-12 1.7E-16 108.6 4.2 79 135-219 10-93 (298)
66 KOG0125 Ataxin 2-binding prote 99.2 1.5E-11 3.2E-16 112.6 6.0 74 8-90 97-174 (376)
67 smart00362 RRM_2 RNA recogniti 99.2 8.2E-11 1.8E-15 84.8 8.7 67 140-210 2-71 (72)
68 KOG0125 Ataxin 2-binding prote 99.2 6.2E-11 1.3E-15 108.5 8.9 75 138-216 97-174 (376)
69 PLN03121 nucleic acid binding 99.2 1.4E-10 2.9E-15 103.5 9.9 73 135-214 5-79 (243)
70 KOG0121 Nuclear cap-binding pr 99.2 4E-11 8.7E-16 95.9 5.4 76 4-88 33-114 (153)
71 smart00360 RRM RNA recognition 99.2 1.6E-10 3.5E-15 82.9 7.8 65 142-210 1-70 (71)
72 KOG4206 Spliceosomal protein s 99.1 1.3E-10 2.9E-15 101.7 8.1 82 134-221 8-95 (221)
73 cd00590 RRM RRM (RNA recogniti 99.1 4E-10 8.7E-15 81.6 9.3 69 140-212 2-74 (74)
74 PF14259 RRM_6: RNA recognitio 99.1 1.4E-10 2.9E-15 84.9 6.8 65 10-83 1-70 (70)
75 PLN03120 nucleic acid binding 99.1 1.5E-10 3.2E-15 104.9 8.3 73 7-89 4-79 (260)
76 PLN03213 repressor of silencin 99.1 2E-10 4.4E-15 110.1 7.7 75 7-90 10-88 (759)
77 KOG4212 RNA-binding protein hn 99.1 3E-09 6.4E-14 100.8 15.3 189 10-213 47-291 (608)
78 COG0724 RNA-binding proteins ( 99.1 1.1E-09 2.5E-14 99.1 12.0 140 7-173 115-261 (306)
79 KOG0109 RNA-binding protein LA 99.1 1.7E-10 3.7E-15 104.1 5.8 70 140-216 5-74 (346)
80 smart00362 RRM_2 RNA recogniti 99.1 6.6E-10 1.4E-14 80.0 7.5 68 9-85 1-72 (72)
81 KOG0149 Predicted RNA-binding 99.0 2.6E-10 5.6E-15 100.3 5.7 71 8-89 13-90 (247)
82 smart00361 RRM_1 RNA recogniti 99.0 8.3E-10 1.8E-14 81.2 6.6 58 19-85 2-70 (70)
83 smart00360 RRM RNA recognition 99.0 1.5E-09 3.3E-14 77.7 7.9 63 13-85 5-71 (71)
84 KOG4207 Predicted splicing fac 99.0 3.2E-10 6.9E-15 97.8 4.6 70 11-90 20-93 (256)
85 KOG0105 Alternative splicing f 99.0 5.9E-10 1.3E-14 94.6 5.9 74 140-217 9-84 (241)
86 KOG0131 Splicing factor 3b, su 99.0 5.4E-10 1.2E-14 94.7 5.7 71 140-214 12-87 (203)
87 KOG0114 Predicted RNA-binding 99.0 8.2E-10 1.8E-14 85.3 5.7 78 8-94 19-99 (124)
88 KOG0122 Translation initiation 99.0 1.2E-09 2.7E-14 96.5 7.5 64 18-90 202-269 (270)
89 KOG0126 Predicted RNA-binding 99.0 7.8E-11 1.7E-15 99.7 -0.5 70 139-212 37-111 (219)
90 KOG0130 RNA-binding protein RB 99.0 1.6E-09 3.4E-14 87.6 6.8 74 135-214 72-150 (170)
91 KOG0117 Heterogeneous nuclear 98.9 1.1E-08 2.4E-13 97.3 13.0 74 135-213 83-161 (506)
92 KOG0149 Predicted RNA-binding 98.9 1.7E-09 3.6E-14 95.3 6.9 76 135-215 10-90 (247)
93 PLN03121 nucleic acid binding 98.9 2.2E-09 4.7E-14 95.9 7.6 70 9-88 7-79 (243)
94 KOG0113 U1 small nuclear ribon 98.9 4.3E-09 9.2E-14 95.5 9.2 79 134-218 100-183 (335)
95 COG0724 RNA-binding proteins ( 98.9 4.4E-09 9.5E-14 95.3 9.2 75 135-215 115-194 (306)
96 smart00361 RRM_1 RNA recogniti 98.9 3.8E-09 8.2E-14 77.6 6.6 56 151-210 2-69 (70)
97 cd00590 RRM RRM (RNA recogniti 98.9 6.9E-09 1.5E-13 75.0 8.0 68 10-86 2-74 (74)
98 KOG0112 Large RNA-binding prot 98.9 2.1E-09 4.5E-14 109.6 5.3 157 6-217 371-532 (975)
99 KOG0108 mRNA cleavage and poly 98.9 6.1E-09 1.3E-13 101.6 8.0 74 140-217 21-99 (435)
100 KOG0132 RNA polymerase II C-te 98.8 5.4E-07 1.2E-11 91.1 21.4 74 7-91 421-496 (894)
101 KOG0126 Predicted RNA-binding 98.8 5.1E-10 1.1E-14 94.8 -1.2 71 7-86 35-111 (219)
102 KOG0130 RNA-binding protein RB 98.8 5.8E-09 1.3E-13 84.3 4.9 70 10-88 75-150 (170)
103 KOG0415 Predicted peptidyl pro 98.8 1.5E-08 3.2E-13 93.9 7.0 83 130-217 234-320 (479)
104 KOG0113 U1 small nuclear ribon 98.8 1.9E-08 4.1E-13 91.4 7.5 75 6-89 100-180 (335)
105 KOG0111 Cyclophilin-type pepti 98.7 6.2E-09 1.3E-13 90.7 3.7 76 9-93 12-93 (298)
106 KOG0108 mRNA cleavage and poly 98.7 2.4E-08 5.3E-13 97.4 7.6 74 8-90 19-98 (435)
107 KOG0153 Predicted RNA-binding 98.7 3.8E-08 8.1E-13 91.1 7.8 75 136-215 227-302 (377)
108 KOG4660 Protein Mei2, essentia 98.7 6.6E-09 1.4E-13 101.4 2.3 173 8-218 76-252 (549)
109 KOG0146 RNA-binding protein ET 98.6 1.1E-07 2.5E-12 85.1 6.5 82 135-219 19-104 (371)
110 KOG4212 RNA-binding protein hn 98.6 1.6E-07 3.6E-12 89.2 7.7 69 140-212 47-120 (608)
111 KOG4660 Protein Mei2, essentia 98.5 6.4E-08 1.4E-12 94.6 3.7 70 134-209 74-143 (549)
112 KOG4454 RNA binding protein (R 98.5 4.8E-08 1E-12 85.2 2.3 74 135-214 9-85 (267)
113 KOG0153 Predicted RNA-binding 98.5 2E-07 4.4E-12 86.4 6.3 71 9-89 230-302 (377)
114 KOG1457 RNA binding protein (c 98.5 1.2E-06 2.6E-11 76.8 10.6 82 136-219 35-121 (284)
115 KOG4454 RNA binding protein (R 98.5 6.8E-08 1.5E-12 84.3 2.1 133 10-203 12-153 (267)
116 KOG0120 Splicing factor U2AF, 98.4 1.2E-06 2.6E-11 86.4 9.8 182 5-220 173-373 (500)
117 KOG0415 Predicted peptidyl pro 98.4 2.4E-07 5.2E-12 86.0 4.5 64 17-89 251-318 (479)
118 KOG4208 Nucleolar RNA-binding 98.4 8.8E-07 1.9E-11 76.9 6.8 69 11-88 53-128 (214)
119 KOG0116 RasGAP SH3 binding pro 98.4 2.3E-06 5E-11 83.2 10.3 72 140-215 291-366 (419)
120 PF11608 Limkain-b1: Limkain b 98.3 2.4E-06 5.1E-11 63.9 7.6 69 140-217 5-78 (90)
121 KOG4849 mRNA cleavage factor I 98.3 2.4E-05 5.1E-10 72.8 15.4 79 134-215 77-162 (498)
122 KOG4661 Hsp27-ERE-TATA-binding 98.3 2.2E-06 4.7E-11 84.0 8.0 77 135-216 405-485 (940)
123 KOG2193 IGF-II mRNA-binding pr 98.3 9.7E-08 2.1E-12 90.4 -1.4 153 7-216 1-157 (584)
124 KOG0533 RRM motif-containing p 98.2 3.9E-06 8.5E-11 75.9 8.0 76 138-217 84-163 (243)
125 KOG4208 Nucleolar RNA-binding 98.2 4.1E-06 8.9E-11 72.8 7.2 73 140-216 52-130 (214)
126 KOG4210 Nuclear localization s 98.2 2.5E-06 5.5E-11 79.5 5.8 168 6-217 87-265 (285)
127 KOG0151 Predicted splicing reg 98.2 3.1E-06 6.6E-11 85.0 6.6 81 133-218 172-259 (877)
128 PF11608 Limkain-b1: Limkain b 98.2 6.2E-06 1.4E-10 61.7 6.5 68 8-90 3-77 (90)
129 KOG0106 Alternative splicing f 98.1 1.9E-06 4.2E-11 76.3 4.0 70 140-216 4-73 (216)
130 KOG0128 RNA-binding protein SA 98.1 5.2E-07 1.1E-11 92.1 -0.2 141 4-215 664-814 (881)
131 KOG1365 RNA-binding protein Fu 98.1 7.8E-06 1.7E-10 76.9 7.2 180 12-219 169-365 (508)
132 KOG4211 Splicing factor hnRNP- 98.1 0.00019 4.1E-09 69.8 16.8 63 138-203 282-348 (510)
133 KOG0129 Predicted RNA-binding 98.1 6.1E-05 1.3E-09 73.6 13.4 152 8-194 260-432 (520)
134 KOG4661 Hsp27-ERE-TATA-binding 98.0 9.6E-06 2.1E-10 79.6 6.0 71 10-89 408-484 (940)
135 KOG4209 Splicing factor RNPS1, 97.9 2.1E-05 4.6E-10 71.1 6.3 75 135-216 101-180 (231)
136 KOG0226 RNA-binding proteins [ 97.9 1.2E-05 2.6E-10 71.9 4.6 143 23-213 117-267 (290)
137 KOG1548 Transcription elongati 97.9 3.1E-05 6.7E-10 72.1 7.4 73 138-214 135-219 (382)
138 PF08777 RRM_3: RNA binding mo 97.9 3.3E-05 7.3E-10 61.3 6.4 57 140-198 4-60 (105)
139 KOG0116 RasGAP SH3 binding pro 97.8 2.7E-05 5.8E-10 75.9 5.8 73 7-89 288-366 (419)
140 KOG0533 RRM motif-containing p 97.8 6.5E-05 1.4E-09 68.1 7.2 73 8-89 84-161 (243)
141 KOG4205 RNA-binding protein mu 97.7 3.9E-05 8.4E-10 72.1 4.9 65 135-203 6-75 (311)
142 COG5175 MOT2 Transcriptional r 97.6 0.00011 2.4E-09 68.2 6.5 73 139-214 116-201 (480)
143 KOG0151 Predicted splicing reg 97.6 8.4E-05 1.8E-09 74.9 5.2 73 8-89 175-256 (877)
144 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00014 3.1E-09 50.2 4.9 50 140-192 4-53 (53)
145 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00022 4.7E-09 56.0 6.1 71 140-216 9-92 (100)
146 KOG0115 RNA-binding protein p5 97.6 0.00022 4.7E-09 64.1 6.9 93 53-202 4-99 (275)
147 KOG0226 RNA-binding proteins [ 97.5 4.7E-05 1E-09 68.2 2.1 72 8-89 191-269 (290)
148 KOG1855 Predicted RNA-binding 97.4 0.00014 3.1E-09 69.5 3.9 69 133-203 229-314 (484)
149 KOG1996 mRNA splicing factor [ 97.4 0.00026 5.7E-09 64.6 5.3 63 19-90 300-367 (378)
150 KOG1365 RNA-binding protein Fu 97.3 0.0046 1E-07 58.6 12.8 147 11-194 67-225 (508)
151 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00054 1.2E-08 47.3 4.1 43 16-60 11-53 (53)
152 KOG1996 mRNA splicing factor [ 97.2 0.00075 1.6E-08 61.7 6.1 64 151-217 300-368 (378)
153 PF08777 RRM_3: RNA binding mo 97.1 0.0012 2.6E-08 52.4 5.5 46 19-66 15-60 (105)
154 PF04059 RRM_2: RNA recognitio 97.0 0.0056 1.2E-07 47.7 8.9 74 142-216 6-87 (97)
155 KOG2416 Acinus (induces apopto 97.0 0.0009 1.9E-08 66.5 5.0 88 133-224 442-530 (718)
156 KOG2202 U2 snRNP splicing fact 97.0 0.00037 8.1E-09 62.7 2.2 62 20-91 83-149 (260)
157 KOG3152 TBP-binding protein, a 96.9 0.00051 1.1E-08 61.8 2.4 65 139-203 76-156 (278)
158 KOG2314 Translation initiation 96.9 0.0012 2.6E-08 65.2 5.2 59 20-86 79-140 (698)
159 COG5175 MOT2 Transcriptional r 96.9 0.0017 3.6E-08 60.5 5.5 58 23-89 138-202 (480)
160 PF08952 DUF1866: Domain of un 96.8 0.0069 1.5E-07 50.5 7.9 76 133-216 25-107 (146)
161 PF15023 DUF4523: Protein of u 96.7 0.0051 1.1E-07 50.8 6.3 70 6-88 85-160 (166)
162 KOG4209 Splicing factor RNPS1, 96.7 0.0025 5.5E-08 57.7 5.0 70 10-90 104-180 (231)
163 KOG1924 RhoA GTPase effector D 96.7 0.013 2.8E-07 60.3 10.4 6 274-279 547-552 (1102)
164 KOG3152 TBP-binding protein, a 96.7 0.00098 2.1E-08 59.9 2.2 62 7-68 74-153 (278)
165 KOG1995 Conserved Zn-finger pr 96.6 0.0019 4E-08 60.8 3.8 79 135-217 64-155 (351)
166 KOG4285 Mitotic phosphoprotein 96.6 0.0054 1.2E-07 56.5 6.6 63 137-203 197-259 (350)
167 KOG4307 RNA binding protein RB 96.6 0.0053 1.2E-07 62.2 6.8 69 137-211 869-942 (944)
168 KOG2202 U2 snRNP splicing fact 96.5 0.0015 3.3E-08 58.8 2.5 62 152-217 83-149 (260)
169 KOG4676 Splicing factor, argin 96.4 0.002 4.3E-08 61.2 2.7 179 7-200 7-213 (479)
170 PF04059 RRM_2: RNA recognitio 96.4 0.02 4.3E-07 44.7 7.7 74 11-90 8-87 (97)
171 PF15023 DUF4523: Protein of u 96.4 0.016 3.4E-07 48.0 7.4 75 132-213 83-159 (166)
172 PF04847 Calcipressin: Calcipr 96.4 0.0097 2.1E-07 52.0 6.5 65 149-218 7-73 (184)
173 KOG2314 Translation initiation 96.4 0.0059 1.3E-07 60.6 5.6 72 135-212 58-140 (698)
174 PF08952 DUF1866: Domain of un 96.4 0.0091 2E-07 49.8 6.0 57 20-90 51-107 (146)
175 KOG4849 mRNA cleavage factor I 96.1 0.11 2.3E-06 49.0 12.3 58 10-68 83-149 (498)
176 KOG1855 Predicted RNA-binding 96.0 0.0052 1.1E-07 59.1 3.1 50 20-69 246-312 (484)
177 KOG4307 RNA binding protein RB 95.8 0.28 6.1E-06 50.3 14.4 70 142-216 7-77 (944)
178 PF04847 Calcipressin: Calcipr 95.6 0.019 4.1E-07 50.2 4.8 63 19-92 9-73 (184)
179 KOG0128 RNA-binding protein SA 95.6 0.00074 1.6E-08 69.7 -4.8 136 19-198 586-732 (881)
180 KOG4676 Splicing factor, argin 95.5 0.016 3.5E-07 55.1 4.3 72 137-213 9-87 (479)
181 KOG4574 RNA-binding protein (c 95.5 0.0096 2.1E-07 61.7 2.8 62 19-89 312-373 (1007)
182 PF08675 RNA_bind: RNA binding 95.2 0.044 9.5E-07 41.2 4.9 43 19-65 22-64 (87)
183 PF10309 DUF2414: Protein of u 95.2 0.084 1.8E-06 37.5 6.1 51 141-195 9-62 (62)
184 KOG4574 RNA-binding protein (c 95.2 0.013 2.9E-07 60.6 2.9 73 142-217 303-375 (1007)
185 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.06 1.3E-06 42.2 5.3 54 14-68 14-78 (100)
186 KOG2193 IGF-II mRNA-binding pr 94.4 0.04 8.6E-07 53.1 3.6 73 140-217 4-77 (584)
187 KOG4285 Mitotic phosphoprotein 94.1 0.12 2.6E-06 47.9 6.0 52 14-68 205-256 (350)
188 PF07576 BRAP2: BRCA1-associat 94.1 0.21 4.6E-06 39.9 6.8 59 11-69 19-80 (110)
189 PF08675 RNA_bind: RNA binding 93.9 0.23 5E-06 37.4 6.1 56 135-197 9-64 (87)
190 KOG2068 MOT2 transcription fac 93.6 0.037 8E-07 51.9 1.8 66 16-90 89-163 (327)
191 PF11767 SET_assoc: Histone ly 93.6 0.32 6.9E-06 35.1 6.2 57 8-69 3-59 (66)
192 KOG0112 Large RNA-binding prot 93.5 0.11 2.3E-06 54.5 5.0 74 6-88 454-529 (975)
193 KOG4210 Nuclear localization s 93.5 0.049 1.1E-06 50.9 2.4 69 12-90 190-264 (285)
194 KOG2068 MOT2 transcription fac 93.0 0.037 8E-07 51.9 0.9 74 139-215 79-162 (327)
195 KOG2416 Acinus (induces apopto 93.0 0.051 1.1E-06 54.5 1.8 79 7-93 444-525 (718)
196 KOG2591 c-Mpl binding protein, 92.2 0.64 1.4E-05 46.5 8.1 62 133-197 171-234 (684)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.41 8.9E-06 41.5 6.0 79 139-217 9-99 (176)
198 PF11767 SET_assoc: Histone ly 91.4 0.69 1.5E-05 33.3 5.6 51 148-203 11-61 (66)
199 PF03880 DbpA: DbpA RNA bindin 91.1 1.3 2.7E-05 32.6 7.0 68 137-213 2-74 (74)
200 KOG1995 Conserved Zn-finger pr 91.0 0.26 5.6E-06 46.7 3.9 73 9-90 68-154 (351)
201 PF07576 BRAP2: BRCA1-associat 90.6 2.3 4.9E-05 34.0 8.4 61 142-202 18-81 (110)
202 KOG2893 Zn finger protein [Gen 89.5 5.6 0.00012 35.9 10.7 7 297-303 170-176 (341)
203 KOG2318 Uncharacterized conser 88.7 2.2 4.7E-05 43.1 8.4 77 134-213 173-305 (650)
204 PF07292 NID: Nmi/IFP 35 domai 88.5 1.8 3.9E-05 33.1 6.1 21 135-157 52-72 (88)
205 KOG0129 Predicted RNA-binding 87.7 1.1 2.3E-05 44.6 5.5 60 135-197 259-328 (520)
206 KOG0804 Cytoplasmic Zn-finger 86.2 1.1 2.4E-05 43.8 4.7 60 9-69 79-141 (493)
207 KOG2135 Proteins containing th 85.9 0.54 1.2E-05 46.2 2.4 62 150-217 386-447 (526)
208 KOG2135 Proteins containing th 85.5 0.59 1.3E-05 45.9 2.5 62 17-90 385-446 (526)
209 PF10309 DUF2414: Protein of u 84.9 2 4.3E-05 30.6 4.3 50 10-63 8-62 (62)
210 KOG0804 Cytoplasmic Zn-finger 82.5 4.7 0.0001 39.7 7.1 66 135-202 74-142 (493)
211 PF10567 Nab6_mRNP_bdg: RNA-re 79.8 4.8 0.0001 37.4 6.0 77 135-216 15-108 (309)
212 PF03880 DbpA: DbpA RNA bindin 79.1 3.7 8E-05 30.0 4.2 55 19-87 15-74 (74)
213 KOG0115 RNA-binding protein p5 79.1 1.6 3.4E-05 39.8 2.5 60 8-67 32-96 (275)
214 KOG2318 Uncharacterized conser 77.8 8 0.00017 39.2 7.2 60 10-69 180-294 (650)
215 KOG2591 c-Mpl binding protein, 76.8 4.9 0.00011 40.5 5.4 53 10-65 178-234 (684)
216 KOG2236 Uncharacterized conser 71.0 21 0.00045 35.4 8.0 13 153-165 246-258 (483)
217 KOG2891 Surface glycoprotein [ 70.7 0.81 1.7E-05 42.1 -1.5 67 149-215 173-267 (445)
218 KOG2253 U1 snRNP complex, subu 69.2 3.3 7.1E-05 42.5 2.3 62 135-203 40-101 (668)
219 KOG1902 Putative signal transd 66.4 1.3E+02 0.0027 29.0 14.5 71 18-94 100-171 (441)
220 PF14111 DUF4283: Domain of un 64.7 9.8 0.00021 31.4 4.1 36 137-172 104-140 (153)
221 KOG2891 Surface glycoprotein [ 64.4 2 4.3E-05 39.5 -0.3 50 19-68 175-247 (445)
222 PRK14548 50S ribosomal protein 58.4 40 0.00087 25.5 5.9 51 144-194 27-80 (84)
223 KOG2236 Uncharacterized conser 58.2 1.4E+02 0.0031 29.7 11.0 8 179-186 318-325 (483)
224 TIGR02542 B_forsyth_147 Bacter 57.1 41 0.00089 27.0 5.9 20 20-39 16-35 (145)
225 COG5638 Uncharacterized conser 56.2 43 0.00093 32.8 7.0 37 176-213 259-295 (622)
226 TIGR03636 L23_arch archaeal ri 52.4 60 0.0013 24.1 5.9 52 142-193 18-72 (77)
227 KOG2893 Zn finger protein [Gen 52.2 71 0.0015 29.0 7.3 6 290-295 172-177 (341)
228 PF08156 NOP5NT: NOP5NT (NUC12 51.9 5.4 0.00012 28.7 0.3 39 20-64 27-65 (67)
229 PF02714 DUF221: Domain of unk 47.6 20 0.00043 33.8 3.5 22 46-67 1-22 (325)
230 PF08734 GYD: GYD domain; Int 46.9 93 0.002 23.6 6.5 47 151-197 22-69 (91)
231 cd04908 ACT_Bt0572_1 N-termina 46.2 98 0.0021 21.4 8.1 58 138-199 4-63 (66)
232 KOG4019 Calcineurin-mediated s 41.4 24 0.00051 30.7 2.6 59 154-216 32-90 (193)
233 KOG4019 Calcineurin-mediated s 41.3 20 0.00044 31.1 2.2 60 20-90 30-90 (193)
234 PF08544 GHMP_kinases_C: GHMP 41.2 90 0.0019 22.5 5.6 46 18-64 35-80 (85)
235 PF08544 GHMP_kinases_C: GHMP 40.2 95 0.0021 22.4 5.6 45 151-196 36-80 (85)
236 PF08156 NOP5NT: NOP5NT (NUC12 39.6 11 0.00023 27.2 0.2 39 152-196 27-65 (67)
237 KOG4483 Uncharacterized conser 38.8 55 0.0012 32.0 4.8 54 136-194 392-446 (528)
238 KOG4264 Nucleo-cytoplasmic pro 38.5 1.6E+02 0.0036 29.9 8.1 9 177-185 443-451 (694)
239 PRK07400 30S ribosomal protein 38.1 1.7E+02 0.0036 27.8 8.2 38 18-56 14-57 (318)
240 KOG0877 40S ribosomal protein 38.0 22 0.00047 31.4 1.9 50 3-52 23-81 (213)
241 KOG4410 5-formyltetrahydrofola 37.4 46 0.001 31.0 3.9 46 140-187 333-379 (396)
242 PF08734 GYD: GYD domain; Int 34.0 1.5E+02 0.0033 22.4 5.9 47 19-65 22-69 (91)
243 PF11411 DNA_ligase_IV: DNA li 32.6 28 0.0006 21.9 1.2 15 17-31 21-35 (36)
244 cd04883 ACT_AcuB C-terminal AC 32.4 1.7E+02 0.0037 20.2 5.9 51 11-61 7-62 (72)
245 PRK10629 EnvZ/OmpR regulon mod 32.0 2.6E+02 0.0056 22.8 7.2 58 149-213 50-108 (127)
246 PF02714 DUF221: Domain of unk 31.3 49 0.0011 31.1 3.3 35 178-217 1-35 (325)
247 KOG4672 Uncharacterized conser 31.2 2.3E+02 0.0049 28.0 7.6 21 46-66 42-62 (487)
248 PTZ00191 60S ribosomal protein 29.7 1.7E+02 0.0037 24.5 5.8 47 144-190 88-137 (145)
249 cd04889 ACT_PDH-BS-like C-term 29.3 1.7E+02 0.0037 19.3 6.0 45 148-192 9-55 (56)
250 PF11823 DUF3343: Protein of u 29.2 1.1E+02 0.0024 22.0 4.2 44 45-88 3-49 (73)
251 PF03467 Smg4_UPF3: Smg-4/UPF3 28.1 39 0.00085 29.2 1.9 59 10-68 10-80 (176)
252 PF15513 DUF4651: Domain of un 26.5 98 0.0021 22.0 3.3 19 20-38 9-27 (62)
253 KOG2253 U1 snRNP complex, subu 26.1 34 0.00075 35.4 1.3 58 6-68 39-98 (668)
254 KOG4672 Uncharacterized conser 25.9 6.6E+02 0.014 24.9 10.9 15 18-32 48-62 (487)
255 KOG2375 Protein interacting wi 25.4 2.1E+02 0.0044 30.6 6.7 12 309-320 610-621 (756)
256 CHL00123 rps6 ribosomal protei 24.6 1.5E+02 0.0032 22.9 4.3 48 147-194 16-81 (97)
257 cd04904 ACT_AAAH ACT domain of 24.5 2E+02 0.0044 20.5 4.9 54 13-66 8-66 (74)
258 PF03468 XS: XS domain; Inter 24.0 97 0.0021 24.8 3.3 38 149-188 29-69 (116)
259 cd04908 ACT_Bt0572_1 N-termina 22.9 2.6E+02 0.0057 19.2 6.6 51 11-61 7-58 (66)
260 PF10567 Nab6_mRNP_bdg: RNA-re 22.4 6.6E+02 0.014 23.7 12.1 166 22-214 32-227 (309)
261 KOG4213 RNA-binding protein La 22.2 1.5E+02 0.0033 25.8 4.2 44 19-64 123-171 (205)
262 PRK11901 hypothetical protein; 22.0 1.9E+02 0.0041 27.6 5.3 54 141-195 246-304 (327)
263 COG5180 PBP1 Protein interacti 21.8 2.5E+02 0.0054 28.2 6.2 15 299-313 583-597 (654)
264 cd04880 ACT_AAAH-PDT-like ACT 21.1 3.1E+02 0.0066 19.3 5.3 54 12-65 6-66 (75)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=267.92 Aligned_cols=199 Identities=17% Similarity=0.220 Sum_probs=158.0
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+++||+.+++| |+||..||++.|+|.++++|. +.+++||||+|+++++|++||+.||+.+| -.|+.
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei--------r~GK~ 155 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI--------RPGKL 155 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc--------cCCCE
Confidence 68999999999 999999999999999999987 45788999999999999999999999998 47999
Q ss_pred EEEeeccCC-cccccccCcCCc--------------------------------CCCCCCCCCCC-----------CccC
Q 019494 82 LRITYSAHT-DLSVKFQSHRSR--------------------------------DYTNPYLPVAP-----------SAID 117 (340)
Q Consensus 82 l~v~~s~~~-~l~~~~~~~~~~--------------------------------~~~~~~~~~~~-----------~~~~ 117 (340)
|.|+.|..+ +|++. +..|++ .|.-.+.-... +.+.
T Consensus 156 igvc~Svan~RLFiG-~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 156 LGVCVSVANCRLFIG-NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred eEEEEeeecceeEec-cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 999988744 45543 222222 11100000000 0011
Q ss_pred cC-CCccccCCCCCCCC----CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHH
Q 019494 118 AS-GQLSVGLDGKKLEP----ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 192 (340)
Q Consensus 118 ~~-~~~~~~~~~~~~~~----~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~ 192 (340)
.. +.++++|+....++ -++|+.|||.||..++|+|.|+++|++||.|++|+.+++ +|||+|.++++|.+|+
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAM 310 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHH
Confidence 11 34678887654433 368888999999999999999999999999999998743 7999999999999999
Q ss_pred HHhcCCeeCCCCccEEEEEeecCCCCcccc
Q 019494 193 EALEGHCIYDGGFCKLHISYSRHTDLSIKV 222 (340)
Q Consensus 193 ~~lng~~i~~~~~~~l~v~~ak~~~~~~~~ 222 (340)
+.|||++|.|. .|.|++||+.+.+.+.
T Consensus 311 ~~~ngkeldG~---~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 311 KETNGKELDGS---PIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHhcCceecCc---eEEEEecCChhhhccc
Confidence 99999999999 9999999998765443
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.1e-32 Score=273.01 Aligned_cols=189 Identities=32% Similarity=0.464 Sum_probs=159.9
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh--cCCCCCccCCCCCCCCceE
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL--DGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l--ng~~i~~~~~~~~~~~~~l 82 (340)
+.-|||++++.+ |+||+++|++||+|.+|++++ +++||||+|.+.|+|++|++.| ++.. +.|++|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~---------l~g~~l 70 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIY---------IRGQPA 70 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCce---------EcCeEE
Confidence 445788888854 899999999999999999886 4568999999999999999986 4444 579999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|+||+++++....+.+ + ....+++++.|+|.||++++|+++|+++|++||
T Consensus 71 ~v~~s~~~~~~~~~~~~----~-------------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G 121 (481)
T TIGR01649 71 FFNYSTSQEIKRDGNSD----F-------------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG 121 (481)
T ss_pred EEEecCCcccccCCCCc----c-------------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC
Confidence 99999876543221100 0 001236788899999999999999999999999
Q ss_pred CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCC
Q 019494 163 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 236 (340)
Q Consensus 163 ~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p 236 (340)
+|++|+|++++...+|||+|++.++|.+|++.|||..|+++ ||+|+|.|++...+.++++++++||||++.++
T Consensus 122 ~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 122 KVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred CEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 99999998776423599999999999999999999999987 78999999999999999999999999999886
No 3
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=253.20 Aligned_cols=215 Identities=42% Similarity=0.621 Sum_probs=177.6
Q ss_pred cccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
+-|+.+.+.- .+-|-|+++|++||.|.+|+.+.|..+++|+|+|.|.+.|..|...|+|+.|+ -++|+|||
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy-------ngcCtLrI 222 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIY-------NGCCTLRI 222 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCccc-------CceeEEEe
Confidence 3455555443 44789999999999999999999999999999999999999999999999998 58999999
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCC-----------------------ccCcCCCccccCCCCCCCCC--CcEEE
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPS-----------------------AIDASGQLSVGLDGKKLEPE--SNVLL 139 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~--s~vl~ 139 (340)
+||+...++++++++|+|||++|.++.++. +++.....+.+.++ ..+.+ +.+|+
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~-~~~~~~~n~vll 301 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADG-KIESPSANVVLL 301 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhccccc-ccccCCCceEEE
Confidence 999999999999999999999999987721 11111111112222 22333 46666
Q ss_pred EEeecC-CCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494 140 ASIENM-QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 140 v~v~nl-~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
|.|| .+.||.|.|+.+|+.||+|.+|+|+.+++ ..|+|+|.|...|+-|+++|+|.+|+|+ .|+|.|||++.+
T Consensus 302 --vsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH~~v 375 (492)
T KOG1190|consen 302 --VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKHTNV 375 (492)
T ss_pred --EecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccCccc
Confidence 4444 57999999999999999999999987664 4799999999999999999999999998 999999999999
Q ss_pred ccccCCCCCCCCCCCCC
Q 019494 219 SIKVNNDRSRDYTLPST 235 (340)
Q Consensus 219 ~~~~~~~~~~d~~~p~~ 235 (340)
++++..++.+++|....
T Consensus 376 qlp~egq~d~glT~dy~ 392 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYG 392 (492)
T ss_pred cCCCCCCccccccccCC
Confidence 99998888777776553
No 4
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=259.29 Aligned_cols=224 Identities=38% Similarity=0.551 Sum_probs=177.5
Q ss_pred cCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 11 YLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
.|+|+++ |+||.+|+.+||+|+++++++++ .+|||||.|+++|...+.+.... ++++++.+|+|+||.++
T Consensus 35 nlp~e~t-E~elI~Lg~pFG~vtn~~~lkGk--nQAflem~d~~sAvtmv~~y~~~-------~p~lr~~~~yiq~sn~~ 104 (492)
T KOG1190|consen 35 NLPWEVT-EEELISLGLPFGKVTNLLMLKGK--NQAFLEMADEESAVTMVNYYTSV-------TPVLRGQPIYIQYSNHS 104 (492)
T ss_pred cCCcccc-HHHHHHhcccccceeeeeeeccc--hhhhhhhcchhhhhheeeccccc-------CccccCcceeehhhhHH
Confidence 4566666 58999999999999999998843 58999999999999988777654 46689999999999988
Q ss_pred cccccccCcCCcCCCCCCCCCCCCccCcC-CCccc--cCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE
Q 019494 91 DLSVKFQSHRSRDYTNPYLPVAPSAIDAS-GQLSV--GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 167 (340)
Q Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v 167 (340)
.+..+......|..+ ... ..+..... ...+. ...| ....++.+|.+.|+|+-+.||.|.|+++|++||.|.||
T Consensus 105 ~lkt~s~p~q~r~~~-vy~--~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 105 ELKTDSQPNQIRGQA-VYQ--AVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred HHhccCchhhhhhhh-HHh--hhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 776653222111100 000 00000000 00000 0112 33457899999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 019494 168 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 247 (340)
Q Consensus 168 ~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p~~~~~~~~~g~ 247 (340)
..|.|+.||+|+|+|.|.++|+.|+.+|+|..|+++ ||+|||+|||..++++|++++++||||+|.+|.++.++++...
T Consensus 181 iTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~ 259 (492)
T KOG1190|consen 181 ITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQL 259 (492)
T ss_pred EEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCccccccchh
Confidence 999999999999999999999999999999999997 9999999999999999999999999999999999888877544
Q ss_pred CC
Q 019494 248 QP 249 (340)
Q Consensus 248 ~p 249 (340)
-+
T Consensus 260 ~~ 261 (492)
T KOG1190|consen 260 MA 261 (492)
T ss_pred hh
Confidence 33
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=7.4e-30 Score=254.65 Aligned_cols=198 Identities=30% Similarity=0.467 Sum_probs=159.4
Q ss_pred cccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 9 RKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 9 ~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
+||+.++. .++++|+++|+.||+|.+|+++++...++|||+|.+.++|.+|++.|||+.|+ .++++|+|+|
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~-------~~~~~l~v~~ 170 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY-------NGCCTLKIEY 170 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc-------CCceEEEEEE
Confidence 57887764 55899999999999999999988655568999999999999999999999986 3467999999
Q ss_pred ccCCcccccccCcCCcCCCCCCCCCC-CCc--------cC-------------cCCCc-----------ccc--------
Q 019494 87 SAHTDLSVKFQSHRSRDYTNPYLPVA-PSA--------ID-------------ASGQL-----------SVG-------- 125 (340)
Q Consensus 87 s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--------~~-------------~~~~~-----------~~~-------- 125 (340)
|+...+.++.+.+++|||+++.++.. ... .. +.+.. ..+
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 99999999999999999999877510 000 00 00000 000
Q ss_pred ---------------CCCCCCCCCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHH
Q 019494 126 ---------------LDGKKLEPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 189 (340)
Q Consensus 126 ---------------~~~~~~~~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~ 189 (340)
..+....+++.+|+ |.||++ .+|+|+|+++|+.||.|++|+|+..++|+ |||+|.+.++|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~-afV~f~~~~~A~ 327 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLM--VSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKET-ALIEMADPYQAQ 327 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEE--EeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCE-EEEEECCHHHHH
Confidence 00011134577877 889997 69999999999999999999998777786 999999999999
Q ss_pred HHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 190 VAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 190 ~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
+|++.|||..|+|+ .|+|++++.....
T Consensus 328 ~Ai~~lng~~l~g~---~l~v~~s~~~~~~ 354 (481)
T TIGR01649 328 LALTHLNGVKLFGK---PLRVCPSKQQNVQ 354 (481)
T ss_pred HHHHHhCCCEECCc---eEEEEEccccccc
Confidence 99999999999999 9999999876543
No 6
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=230.97 Aligned_cols=208 Identities=31% Similarity=0.457 Sum_probs=175.3
Q ss_pred cCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeecc
Q 019494 11 YLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 88 (340)
Q Consensus 11 ~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~ 88 (340)
.++++. ..|.||.+..+.||.|.-|.++..+ .+|+|||+|++.|+.+++.-....|+ +.|..-.+.||.
T Consensus 35 hvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~-------i~gq~Al~NySt 105 (494)
T KOG1456|consen 35 HVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIY-------IAGQQALFNYST 105 (494)
T ss_pred EEeccccccchhHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCccc-------ccCchhhcccch
Confidence 444444 3489999999999999999998854 46999999999999999977777776 788888889988
Q ss_pred CCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE
Q 019494 89 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 168 (340)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~ 168 (340)
.+++.... .....+++||+++|.|.-+.+|.|.|+.++...|+|.+|+
T Consensus 106 sq~i~R~g--------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv 153 (494)
T KOG1456|consen 106 SQCIERPG--------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV 153 (494)
T ss_pred hhhhccCC--------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE
Confidence 77654321 0112358999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCccccCCCCCCCCCCCCCCCC----------
Q 019494 169 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV---------- 238 (340)
Q Consensus 169 i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~d~~~p~~p~~---------- 238 (340)
||+|+ |.+|.|||++.+.|++|+++|||..|+.+ ||+|+|+|||++++++.+|+.++||||.|.++..
T Consensus 154 Ifkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r 231 (494)
T KOG1456|consen 154 IFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDR 231 (494)
T ss_pred EEecc-ceeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCcc
Confidence 99985 77899999999999999999999999998 9999999999999999999999999999987331
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCC
Q 019494 239 NSQPSILGQQPVPMVGATANQYN 261 (340)
Q Consensus 239 ~~~~~~~g~~p~~~~g~~~~~~~ 261 (340)
..++.++|..|..++|+.++++.
T Consensus 232 ~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 232 QRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred ccCCCccCCChhhcCCCCCCCcc
Confidence 23567778888888776655443
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.2e-28 Score=234.95 Aligned_cols=159 Identities=17% Similarity=0.262 Sum_probs=132.8
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...|||.+++.+ |++|+++|+.||+|.+|+|++ +.+++||||+|.|+++|++|++.|||..| .++
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---------~gr 177 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---------RNK 177 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---------CCc
Confidence 456899888854 899999999999999998876 23567899999999999999999999884 699
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
+|+|++++...... .+..|+ |.||+..+|+|+|+++|++
T Consensus 178 ~i~V~~a~p~~~~~---------------------------------------~~~~lf--V~nLp~~vtee~L~~~F~~ 216 (346)
T TIGR01659 178 RLKVSYARPGGESI---------------------------------------KDTNLY--VTNLPRTITDDQLDTIFGK 216 (346)
T ss_pred eeeeeccccccccc---------------------------------------ccceeE--EeCCCCcccHHHHHHHHHh
Confidence 99999976431100 123455 8999999999999999999
Q ss_pred cCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 161 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 161 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
||+|++|+|+.++ +|+ |||+|+++++|++|++.||+..+.+. ...|+|.+++...
T Consensus 217 fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~~~~ 276 (346)
T TIGR01659 217 YGQIVQKNILRDKLTGTPRGV-AFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAEEHG 276 (346)
T ss_pred cCCEEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCccc
Confidence 9999999987643 365 99999999999999999999998774 3489999988653
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-29 Score=220.14 Aligned_cols=171 Identities=19% Similarity=0.349 Sum_probs=138.6
Q ss_pred ccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+|++.++.+ -|+||+.|.+||+|+++++++ .++|+|+||.|-.+++|++||..|||+- +++|.||
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW---------lG~R~IR 135 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW---------LGRRTIR 135 (321)
T ss_pred EEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee---------eccceee
Confidence 566666644 589999999999999999988 4688899999999999999999999998 5799999
Q ss_pred EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494 84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 163 (340)
Q Consensus 84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 163 (340)
-.|+.++... ...+...|.... ....+.++. ||++|+..-+|||+|++.|+.||.
T Consensus 136 TNWATRKp~e---~n~~~ltfdeV~--------------------NQssp~Nts--VY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 136 TNWATRKPSE---MNGKPLTFDEVY--------------------NQSSPDNTS--VYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred ccccccCccc---cCCCCccHHHHh--------------------ccCCCCCce--EEeCCcCccccHHHHHHhcccCCc
Confidence 9999877411 111111110000 001123444 669999988999999999999999
Q ss_pred eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 164 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 164 v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
|.+|++|+.++ +|||.|++.|+|.+||..+||++|.|. .+||.|.|....-
T Consensus 191 I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G~---~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 191 IQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWGKEGDDG 241 (321)
T ss_pred ceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCce---EEEEeccccCCCC
Confidence 99999999885 699999999999999999999999999 9999999987654
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.9e-26 Score=233.29 Aligned_cols=180 Identities=16% Similarity=0.240 Sum_probs=134.2
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
..+||.+++.+ |++|+++|+.||+|.++.+++. ..+++|||+|.+.++|.+|++.|||+.|. ....++.|
T Consensus 179 ~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~-----~~~~g~~l 253 (562)
T TIGR01628 179 TNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG-----LAKEGKKL 253 (562)
T ss_pred CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec-----ccccceee
Confidence 34788888744 8999999999999999988862 35668999999999999999999999852 00128889
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|..++.+....... .+.+..... .......+..|+ |+||+..+|+++|+++|++||
T Consensus 254 ~v~~a~~k~er~~~~---~~~~~~~~~------------------~~~~~~~~~~l~--V~nl~~~~~~~~L~~~F~~~G 310 (562)
T TIGR01628 254 YVGRAQKRAEREAEL---RRKFEELQQ------------------ERKMKAQGVNLY--VKNLDDTVTDEKLRELFSECG 310 (562)
T ss_pred EeecccChhhhHHHH---HhhHHhhhh------------------hhhcccCCCEEE--EeCCCCccCHHHHHHHHHhcC
Confidence 998876442110000 000000000 000001233444 999999999999999999999
Q ss_pred CeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 163 PVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 163 ~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
+|++|+++.+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|++.++.+
T Consensus 311 ~i~~~~i~~d~~g~~~g~-gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V~~a~~k~~~ 367 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGF-GFVCFSNPEEANRAVTEMHGRMLGGK---PLYVALAQRKEQR 367 (562)
T ss_pred CeEEEEEEECCCCCcCCe-EEEEeCCHHHHHHHHHHhcCCeeCCc---eeEEEeccCcHHH
Confidence 99999987543 565 99999999999999999999999999 9999999876543
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=2.5e-25 Score=223.06 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=134.5
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
..++||||++++.+ |++|+++|++||+|.+|.+++ +++++||||+|.+.++|++|++.|||+.| .
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---------~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---------G 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---------e
Confidence 45689999999854 899999999999999998875 34678999999999999999999999884 6
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|+.|+|.++....... ...+... ......+. |||+||+.++++++|+++|
T Consensus 176 GR~IkV~rp~~~p~a~-----~~~~~~~-----------------------~~~~~~~r--LfVgnLp~~vteedLk~lF 225 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQ-----PIIDMVQ-----------------------EEAKKFNR--IYVASVHPDLSETDIKSVF 225 (612)
T ss_pred cceeeecccccccccc-----ccccccc-----------------------ccccccce--EEeecCCCCCCHHHHHHHH
Confidence 9999998644221000 0000000 00011334 4499999999999999999
Q ss_pred cccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 159 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 159 ~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+.||.|++++|.+. ++|| |||+|++.++|.+|++.|||..|.|+ .|+|.++...
T Consensus 226 s~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~kAI~amNg~elgGr---~LrV~kAi~p 284 (612)
T TIGR01645 226 EAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKCVTP 284 (612)
T ss_pred hhcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHHHHHHHhCCCeeCCe---EEEEEecCCC
Confidence 99999999998753 4576 99999999999999999999999999 9999987654
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=4.6e-25 Score=211.63 Aligned_cols=198 Identities=15% Similarity=0.232 Sum_probs=136.3
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||.+++.+ |++|+++|++||+|.+++++.. ..+++|||+|.+.++|++|++.|||..+. ....
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-------g~~~ 161 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-------GCTE 161 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-------CCce
Confidence 457899999854 8999999999999999988752 35678999999999999999999998753 2346
Q ss_pred eEEEeeccCCcccccc-cCcCCcCCCCCCC----------CCCCCccC--------------------------------
Q 019494 81 TLRITYSAHTDLSVKF-QSHRSRDYTNPYL----------PVAPSAID-------------------------------- 117 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~-~~~~~~~~~~~~~----------~~~~~~~~-------------------------------- 117 (340)
+|+|.+++........ .......+.++.. ........
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 8899988643211100 0000000000000 00000000
Q ss_pred -cCCC-----cc----ccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEc
Q 019494 118 -ASGQ-----LS----VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQY 182 (340)
Q Consensus 118 -~~~~-----~~----~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F 182 (340)
.... .. .+.........+.+|+ |+||++.+++++|+++|++||.|++|+|..+. +|+ |||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~-aFV~F 318 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIF--VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY-GFVSM 318 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce-EEEEE
Confidence 0000 00 0000000112234566 89999999999999999999999999987543 676 99999
Q ss_pred CChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 183 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 183 ~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
++.++|.+|++.|||..|.|+ .|+|+|...+.
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr---~i~V~~~~~~~ 350 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNR---VLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCe---EEEEEEccCCC
Confidence 999999999999999999999 99999986553
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=4e-25 Score=212.04 Aligned_cols=160 Identities=16% Similarity=0.282 Sum_probs=133.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+-.+|||++++.+ |+||+++|+.||+|.+|++++ +.+++||||+|.+.++|++||+.|||..| .|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---------~g 72 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---------QN 72 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE---------CC
Confidence 3468999999854 999999999999999999876 23567999999999999999999999884 69
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
++|+|+|++.+.-.. ....|+ |.||+..+++++|+++|+
T Consensus 73 ~~i~v~~a~~~~~~~---------------------------------------~~~~l~--v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 73 KTIKVSYARPSSDSI---------------------------------------KGANLY--VSGLPKTMTQHELESIFS 111 (352)
T ss_pred eeEEEEeeccccccc---------------------------------------ccceEE--ECCccccCCHHHHHHHHh
Confidence 999999987542110 123344 899999999999999999
Q ss_pred ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 160 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 160 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
.||.|..+++..+ .+|+ |||+|++.++|.+|++.|||..+.+. ...|+|.|+....
T Consensus 112 ~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A~~ai~~l~g~~~~g~-~~~i~v~~a~~~~ 172 (352)
T TIGR01661 112 PFGQIITSRILSDNVTGLSKGV-GFIRFDKRDEADRAIKTLNGTTPSGC-TEPITVKFANNPS 172 (352)
T ss_pred ccCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCCCC
Confidence 9999999998653 2465 99999999999999999999988774 3478999987654
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=209.49 Aligned_cols=165 Identities=18% Similarity=0.273 Sum_probs=136.7
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..+|++-++.+ |+||+++|++||.|.+|.++| +.++++|||.|.+.++|.+|+..|+++... | ..-.+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl----p--G~~~p 108 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL----P--GMHHP 108 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc----C--CCCcc
Confidence 35699999976 999999999999999999988 347788999999999999999999998753 2 23457
Q ss_pred EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494 82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 161 (340)
Q Consensus 82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 161 (340)
|.|.|+...+..+ ...+.|| |+-|+..+||.+++++|++|
T Consensus 109 vqvk~Ad~E~er~--------------------------------------~~e~KLF--vg~lsK~~te~evr~iFs~f 148 (510)
T KOG0144|consen 109 VQVKYADGERERI--------------------------------------VEERKLF--VGMLSKQCTENEVREIFSRF 148 (510)
T ss_pred eeecccchhhhcc--------------------------------------ccchhhh--hhhccccccHHHHHHHHHhh
Confidence 8888877432211 0134466 88999999999999999999
Q ss_pred CCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 162 GPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 162 G~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
|.|++|.|+++ +|| ||||.|.++|.|..|++.|||..-..++..+|.|.|+++++.+
T Consensus 149 G~Ied~~ilrd~~~~sRG-caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 149 GHIEDCYILRDPDGLSRG-CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred Cccchhhheecccccccc-eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999999873 466 6999999999999999999999766665679999999887654
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=7.1e-24 Score=215.80 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=128.5
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.|||++++.+ |++|+++|++||+|.+|++++ +.+++||||+|.+.++|++|++.||+..| .|++|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---------~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---------GGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeeE
Confidence 5899999854 999999999999999999876 34567999999999999999999999885 69999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|.|++.+....+ ..... |+|.||+.++|+++|+++|++||
T Consensus 73 ~i~~s~~~~~~~~-------------------------------------~~~~~--vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 73 RIMWSQRDPSLRR-------------------------------------SGVGN--IFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred Eeecccccccccc-------------------------------------cCCCc--eEEcCCCccCCHHHHHHHHHhcC
Confidence 9999864311000 00223 44999999999999999999999
Q ss_pred CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 163 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 163 ~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
.|+.|++... ++|+ |||+|++.++|.+|++.|||..+.++ .|.|...+
T Consensus 114 ~i~~~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~~lng~~~~~~---~i~v~~~~ 165 (562)
T TIGR01628 114 NILSCKVATDENGKSRGY-GFVHFEKEESAKAAIQKVNGMLLNDK---EVYVGRFI 165 (562)
T ss_pred CcceeEeeecCCCCcccE-EEEEECCHHHHHHHHHHhcccEecCc---eEEEeccc
Confidence 9999998653 3565 99999999999999999999999998 88886543
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=3.3e-23 Score=205.70 Aligned_cols=168 Identities=18% Similarity=0.273 Sum_probs=132.8
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+...|||.+++.+ |++|+++|+.||+|.+|.+++ +.+++||||+|.+.++|.+||. |+|..+ .|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---------~g 157 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---------LG 157 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---------CC
Confidence 3456899999854 899999999999999998876 3457899999999999999995 899884 69
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
++|.|.+++........... . .....+.+.+|+ |+||+..+|+++|+++|+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~------~---------------------~~~~~p~~~~l~--v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAAT------H---------------------QPGDIPNFLKLY--VGNLHFNITEQELRQIFE 208 (457)
T ss_pred eeeEEeecchhhhhhhhccc------c---------------------cCCCCCCCCEEE--EcCCCCCCCHHHHHHHHH
Confidence 99999987643111000000 0 000012245666 899999999999999999
Q ss_pred ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 160 AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 160 ~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
.||.|.+|.|... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|++..
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~i~g~---~i~v~~a~~~ 266 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEAKEALEVMNGFELAGR---PIKVGYAQDS 266 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhcCCcEECCE---EEEEEEccCC
Confidence 9999999998743 2465 99999999999999999999999998 9999998733
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=3.9e-23 Score=206.97 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=130.2
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCc-eeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
..++|||.+++.+ +++|++.|+++++ |.+++++. .++++||||+|.+.++|.+|++.|+...+. +
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~-------l 209 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------L 209 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE-------e
Confidence 4678999999854 7899999999975 55555543 235678999999999999999988764432 5
Q ss_pred CCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019494 78 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 157 (340)
Q Consensus 78 ~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 157 (340)
.++.|+|+|+..+..... . .....++|+ |.||++++|+|+|+++
T Consensus 210 ~Gr~I~VdwA~p~~~~d~----~------------------------------~~~~~k~Lf--VgNL~~~~tee~L~~~ 253 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDE----D------------------------------VMAKVKILY--VRNLMTTTTEEIIEKS 253 (578)
T ss_pred cCceEEEEeecccccccc----c------------------------------ccccccEEE--EeCCCCCCCHHHHHHH
Confidence 699999999875421100 0 001234555 8999999999999999
Q ss_pred Hccc--CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494 158 FSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 158 F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
|+.| |+|++|++.+ + +|||+|+++++|.+|++.|||..|.++ .|+|+|+++.+.
T Consensus 254 F~~f~~G~I~rV~~~r---g-fAFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp~~~ 309 (578)
T TIGR01648 254 FSEFKPGKVERVKKIR---D-YAFVHFEDREDAVKAMDELNGKELEGS---EIEVTLAKPVDK 309 (578)
T ss_pred HHhcCCCceEEEEeec---C-eEEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEccCCCc
Confidence 9999 9999998764 4 499999999999999999999999998 999999988654
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.7e-23 Score=180.70 Aligned_cols=156 Identities=17% Similarity=0.284 Sum_probs=130.7
Q ss_pred cccCCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 9 RKYLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 9 ~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
-.||+--.+ +|||+.||...|+|.+|++++ +.+-+|+||.|.++++|++||+.|||..+ -.++|+|
T Consensus 46 vNYLPQ~MT-qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---------Q~KTIKV 115 (360)
T KOG0145|consen 46 VNYLPQNMT-QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---------QNKTIKV 115 (360)
T ss_pred eeecccccC-HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---------ccceEEE
Confidence 347777666 599999999999999999987 34567899999999999999999999884 6999999
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 164 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 164 (340)
+|++.+.-.++ ... +||.+||..+|..||+++|++||.|
T Consensus 116 SyARPSs~~Ik---------------------------------------~aN--LYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 116 SYARPSSDSIK---------------------------------------DAN--LYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred EeccCChhhhc---------------------------------------ccc--eEEecCCccchHHHHHHHHHHhhhh
Confidence 99997644332 111 6699999999999999999999998
Q ss_pred eEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 165 QKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 165 ~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
..-+|+.+ ++|. +||.|+.+++|.+|++.|||..-.|- ..+|.|.|+....
T Consensus 155 ItSRiL~dqvtg~srGV-gFiRFDKr~EAe~AIk~lNG~~P~g~-tepItVKFannPs 210 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGC-TEPITVKFANNPS 210 (360)
T ss_pred hhhhhhhhcccceecce-eEEEecchhHHHHHHHhccCCCCCCC-CCCeEEEecCCcc
Confidence 87776543 3575 99999999999999999999987664 6699999987653
No 18
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.89 E-value=9.5e-22 Score=181.00 Aligned_cols=190 Identities=28% Similarity=0.406 Sum_probs=155.0
Q ss_pred CCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCccccc
Q 019494 16 LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK 95 (340)
Q Consensus 16 ~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~ 95 (340)
+.|-+.|+.+|-..|+|.+|+|++| ++-||+|||.+.+.|++|...|||..|| -++|+|+|+|++..++++.
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIY-------sGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIY-------SGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhccccccc-------ccceeEEEEecCcceeeee
Confidence 3455789999999999999999987 6779999999999999999999999998 6899999999999999999
Q ss_pred ccCcCCcCCCCCCCCC--CCCcc--C----------------c--CCCcc---------------------ccCCCCCCC
Q 019494 96 FQSHRSRDYTNPYLPV--APSAI--D----------------A--SGQLS---------------------VGLDGKKLE 132 (340)
Q Consensus 96 ~~~~~~~~~~~~~~~~--~~~~~--~----------------~--~~~~~---------------------~~~~~~~~~ 132 (340)
.+...+|||+.|++.. .+++. + + .+-.+ .+.+.....
T Consensus 205 knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~ 284 (494)
T KOG1456|consen 205 KNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGG 284 (494)
T ss_pred ecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCC
Confidence 8888899999886531 11111 0 0 00000 001111223
Q ss_pred CCCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 133 PESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 133 ~~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
.++.|+.|| +|+ ..++.|.|++||+.||.|++|++++.+.|. |.||+.|..+.++|+..||+..++|+ +|.|.
T Consensus 285 ~~g~VmMVy--GLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt-amVemgd~~aver~v~hLnn~~lfG~---kl~v~ 358 (494)
T KOG1456|consen 285 APGCVMMVY--GLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT-AMVEMGDAYAVERAVTHLNNIPLFGG---KLNVC 358 (494)
T ss_pred CCCcEEEEE--eccccccchhhhhhhhhhcCceeeEEEeecccce-eEEEcCcHHHHHHHHHHhccCccccc---eEEEe
Confidence 568898855 554 478999999999999999999999988886 99999999999999999999999999 99999
Q ss_pred eecCCCCc
Q 019494 212 YSRHTDLS 219 (340)
Q Consensus 212 ~ak~~~~~ 219 (340)
+||...+.
T Consensus 359 ~SkQ~~v~ 366 (494)
T KOG1456|consen 359 VSKQNFVS 366 (494)
T ss_pred eccccccc
Confidence 99987654
No 19
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=180.20 Aligned_cols=145 Identities=19% Similarity=0.285 Sum_probs=130.6
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
..|||+|++.+ |.+|+.||++||+|.++.|+| +||||..+|+..|..||+.|+|..| .|..|.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtL---------hg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTL---------HGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhccccee---------cceEEEEE
Confidence 56899999954 899999999999999999986 5899999999999999999999984 69999999
Q ss_pred eccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCee
Q 019494 86 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 165 (340)
Q Consensus 86 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~ 165 (340)
-|+.+.. .++.|+ |+|+...++.+||+..|++||.|.
T Consensus 70 aSksKsk-----------------------------------------~stkl~--vgNis~tctn~ElRa~fe~ygpvi 106 (346)
T KOG0109|consen 70 ASKSKSK-----------------------------------------ASTKLH--VGNISPTCTNQELRAKFEKYGPVI 106 (346)
T ss_pred eccccCC-----------------------------------------Cccccc--cCCCCccccCHHHhhhhcccCCce
Confidence 8886621 255677 999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 166 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 166 ~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
++.|.++ ++||+|+-.++|..|+..|||+++.|+ .|+|.++..
T Consensus 107 ecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~sts 149 (346)
T KOG0109|consen 107 ECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLSTS 149 (346)
T ss_pred eeeeecc----eeEEEEeeccchHHHHhcccccccccc---eeeeeeecc
Confidence 9999863 699999999999999999999999999 999998753
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.5e-21 Score=195.71 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=122.6
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+.|||++++.+ |++|+++|++||+|.+|++++ +.+++||||+|.+.|+|++||+.||+..| ..++.|
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--------~~Gr~l 130 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--------RPGRLL 130 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee--------cCCccc
Confidence 67999999965 999999999999999998876 34677899999999999999999999886 346666
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
.|..+.. ++.|+ |.||+.++|+++|+++|++++
T Consensus 131 ~V~~S~~---------------------------------------------~~rLF--VgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 131 GVCISVD---------------------------------------------NCRLF--VGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred ccccccc---------------------------------------------CceeE--eecCCcchhhHHHHHHhhccc
Confidence 6654321 33455 899999999999999999997
Q ss_pred C-eeEEEEEc------CCCCeEEEEEcCChHHHHHHHHHhcCC--eeCCCCccEEEEEeecCC
Q 019494 163 P-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 163 ~-v~~v~i~~------~~~g~~afV~F~~~~~A~~A~~~lng~--~i~~~~~~~l~v~~ak~~ 216 (340)
. |+++.++. +++|| |||+|++.++|.+|++.|+.. .|.++ .|+|+|+.+.
T Consensus 164 egvv~vIv~~~~~~kgKnRGF-AFVeF~s~edAa~AirkL~~gki~l~Gr---~I~VdwA~p~ 222 (578)
T TIGR01648 164 EGVVDVIVYHSAADKKKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH---VIAVDWAEPE 222 (578)
T ss_pred CCceEEEEeccccccCccCce-EEEEcCCHHHHHHHHHHhhccceEecCc---eEEEEeeccc
Confidence 4 55555432 34676 999999999999999988743 57787 9999998754
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=3.3e-21 Score=193.80 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=131.1
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++. +|++|+++|+.||.|..+.+++ +.+++||||+|.+.++|..|++.|||..| .|+
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---------~~~ 365 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---------GDN 365 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------CCe
Confidence 35799999985 4899999999999999998876 34678999999999999999999999985 599
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCC----------CC
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA----------VT 150 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~----------vt 150 (340)
.|+|.++.......... ..... .+ ......... .... .....++++|+ +.|+... ..
T Consensus 366 ~l~v~~a~~~~~~~~~~--~~~~~-~~-~~~~~~~~~---~~~~----~~~~~~s~v~~--l~N~~~~~~l~~d~~~~~~ 432 (509)
T TIGR01642 366 KLHVQRACVGANQATID--TSNGM-AP-VTLLAKALS---QSIL----QIGGKPTKVVQ--LTNLVTGDDLMDDEEYEEI 432 (509)
T ss_pred EEEEEECccCCCCCCcc--ccccc-cc-cccccccch---hhhc----cccCCCceEEE--eccCCchhHhcCcchHHHH
Confidence 99999986432111100 00000 00 000000000 0000 00123467777 6787421 12
Q ss_pred HHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
.++|+++|++||.|++|+|++.. .|+ |||+|++.++|.+|++.|||..|.|+ .|.|+|....
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~-~fV~F~~~e~A~~A~~~lnGr~~~gr---~v~~~~~~~~ 502 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGK-VFLEYADVRSAEKAMEGMNGRKFNDR---VVVAAFYGED 502 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcce-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEeCHH
Confidence 36799999999999999997531 355 99999999999999999999999999 9999997654
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=8.3e-22 Score=165.67 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=130.5
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
-+|+++++.. |+-|++||-+.|.|.++.+-+ ....+||||||.++|+|+-|++-||...++ |++|
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---------grpI 81 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---------GRPI 81 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---------Ccee
Confidence 4799999853 789999999999999999876 235678999999999999999999987754 9999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|..+.....++. -+..|| |+||+..|++..|+++|+.||
T Consensus 82 rv~kas~~~~nl~--------------------------------------vganlf--vgNLd~~vDe~~L~dtFsafG 121 (203)
T KOG0131|consen 82 RVNKASAHQKNLD--------------------------------------VGANLF--VGNLDPEVDEKLLYDTFSAFG 121 (203)
T ss_pred EEEeccccccccc--------------------------------------cccccc--ccccCcchhHHHHHHHHHhcc
Confidence 9997762211110 123456 999999999999999999999
Q ss_pred CeeEE-EEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 163 PVQKI-AMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 163 ~v~~v-~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
.+.+. +|++ +.+|+ |||.|++.|.+.+|++.+||..+.++ .+.|+|++.++.+
T Consensus 122 ~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd~ai~s~ngq~l~nr---~itv~ya~k~~~k 180 (203)
T KOG0131|consen 122 VLISPPKIMRDPDTGNPKGF-GFINYASFEASDAAIGSMNGQYLCNR---PITVSYAFKKDTK 180 (203)
T ss_pred ccccCCcccccccCCCCCCC-eEEechhHHHHHHHHHHhccchhcCC---ceEEEEEEecCCC
Confidence 88774 4543 23455 99999999999999999999999999 9999999877655
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=8.2e-21 Score=190.98 Aligned_cols=184 Identities=19% Similarity=0.205 Sum_probs=126.7
Q ss_pred cccccccCCCCCCC--HHHHHHhhccc------------CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAF------------GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 70 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~f------------G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~ 70 (340)
+...+|||+|++.+ |++|+++|+.| +.|.++.+.+ .++||||+|.+.|+|.+|| .|||..+
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~~~-- 247 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSIIY-- 247 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCeEe--
Confidence 45678999999954 89999999975 3444554433 5678999999999999999 5999874
Q ss_pred cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494 71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT 150 (340)
Q Consensus 71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt 150 (340)
.|+.|+|...+...-... .........+... ...... .. ...........|+ |+||+..+|
T Consensus 248 -------~g~~l~v~r~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~-~~--~~~~~~~~~~~l~--v~nlp~~~~ 308 (509)
T TIGR01642 248 -------SNVFLKIRRPHDYIPVPQ--ITPEVSQKNPDDN-----AKNVEK-LV--NSTTVLDSKDRIY--IGNLPLYLG 308 (509)
T ss_pred -------eCceeEecCccccCCccc--cCCCCCCCCCccc-----cccccc-cc--ccccCCCCCCEEE--EeCCCCCCC
Confidence 689999875432110000 0000000000000 000000 00 0000011245566 999999999
Q ss_pred HHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+++|+++|+.||.|+.+.|+.. ++|+ |||+|.+.++|..|++.|||..|.++ .|+|.++...
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~---~l~v~~a~~~ 375 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN---KLHVQRACVG 375 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECccC
Confidence 9999999999999999988653 3565 99999999999999999999999998 9999998654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.85 E-value=2.5e-20 Score=185.06 Aligned_cols=196 Identities=17% Similarity=0.250 Sum_probs=132.6
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...|||++++.+ |++|+++|+.||.|.+|.+.+. ..++||||+|.+.++|.+|++.|||..| .|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---------~g~ 256 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---------AGR 256 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---------CCE
Confidence 357899999844 8999999999999999988762 3567899999999999999999999874 699
Q ss_pred eEEEeeccCCcccccc-cC---c-----CCcCCCCCC-------CCCC----CCccCcC-------------C--C---c
Q 019494 81 TLRITYSAHTDLSVKF-QS---H-----RSRDYTNPY-------LPVA----PSAIDAS-------------G--Q---L 122 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~-~~---~-----~~~~~~~~~-------~~~~----~~~~~~~-------------~--~---~ 122 (340)
+|+|.|++........ .. . .......+. +... ...+.+. + . .
T Consensus 257 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (457)
T TIGR01622 257 PIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIP 336 (457)
T ss_pred EEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccc
Confidence 9999997632111000 00 0 000000000 0000 0000000 0 0 0
Q ss_pred ---cc----cCC------CCCCCCCCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEE-cCCCCeEE
Q 019494 123 ---SV----GLD------GKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMF-DKNGGLQA 178 (340)
Q Consensus 123 ---~~----~~~------~~~~~~~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~-~~~~g~~a 178 (340)
.. .+. ......++++|+ |.||....+ .++|++.|++||.|++|.|. ....|+ +
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~-~ 413 (457)
T TIGR01622 337 SRYATGALAIMARNSFVPSTNNNLATTCLV--LSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGK-I 413 (457)
T ss_pred ccccccccccccCCCCCCcccCCCCCcEEE--EecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCcee-E
Confidence 00 000 000123466766 778854443 36799999999999999987 444675 9
Q ss_pred EEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 179 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 179 fV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
||+|.+.++|.+|++.|||..+.|+ .|.+.|.....
T Consensus 414 fV~F~~~e~A~~A~~~lnGr~f~gr---~i~~~~~~~~~ 449 (457)
T TIGR01622 414 YLKFSSVDAALAAFQALNGRYFGGK---MITAAFVVNDV 449 (457)
T ss_pred EEEECCHHHHHHHHHHhcCcccCCe---EEEEEEEcHHH
Confidence 9999999999999999999999999 99999976554
No 25
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.85 E-value=6.5e-20 Score=159.79 Aligned_cols=197 Identities=22% Similarity=0.336 Sum_probs=139.8
Q ss_pred ccccccccCCCCCCC--HHHHHH----hhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 4 IWPLSRKYLQWQLSA--SGERAH----VFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~~----lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
+.|+.-|||.|+..- .+||+. ||++||+|.+|+..+ .+..++|||.|.+.+.|..|+..|+|..++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy------- 78 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY------- 78 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc-------
Confidence 567778899888743 566666 999999999999887 345568999999999999999999999976
Q ss_pred CCCceEEEeeccCC-ccccccc---CcCCcCCCCCCCC---CCCCccCcCCC-c--cccCCC-CCCCCCCcEEEEEeecC
Q 019494 77 MGPCTLRITYSAHT-DLSVKFQ---SHRSRDYTNPYLP---VAPSAIDASGQ-L--SVGLDG-KKLEPESNVLLASIENM 145 (340)
Q Consensus 77 ~~~~~l~v~~s~~~-~l~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~-~--~~~~~~-~~~~~~s~vl~v~v~nl 145 (340)
|++++|+|++.+ ++..+.. ..+......-.+. ........+.. . .+.... ....+++.+|+ +.|+
T Consensus 79 --gK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf--~~ni 154 (221)
T KOG4206|consen 79 --GKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILF--LTNI 154 (221)
T ss_pred --CchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEE--EecC
Confidence 999999999865 2222200 0000000000000 00000000000 0 000000 22346788888 7899
Q ss_pred CCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 146 QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 146 ~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|.+++.+.|..+|+.|....+|++.....+. |||+|.+...|..|.+.|+|..|.-+ ..|+|+|++
T Consensus 155 P~es~~e~l~~lf~qf~g~keir~i~~~~~i-Afve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a~ 220 (221)
T KOG4206|consen 155 PSESESEMLSDLFEQFPGFKEIRLIPPRSGI-AFVEFLSDRQASAAQQALQGFKITKK--NTMQITFAK 220 (221)
T ss_pred CcchhHHHHHHHHhhCcccceeEeccCCCce-eEEecchhhhhHHHhhhhccceeccC--ceEEecccC
Confidence 9999999999999999999999988766565 99999999999999999999999833 399999876
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=8.4e-20 Score=161.19 Aligned_cols=192 Identities=18% Similarity=0.290 Sum_probs=134.8
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.||++.++.+ ..||+++|++||.|...+++- +.+++.+||.|...++|+.||..|||..-. ....+|
T Consensus 129 NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-------g~tepI 201 (360)
T KOG0145|consen 129 NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-------GCTEPI 201 (360)
T ss_pred ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-------CCCCCe
Confidence 4699999965 789999999999987665543 346678999999999999999999998732 445689
Q ss_pred EEeeccCCccccc------ccCcCCcCCCCCCCCCCC-------------------CccCcC-CCccccCCCCCCCCCCc
Q 019494 83 RITYSAHTDLSVK------FQSHRSRDYTNPYLPVAP-------------------SAIDAS-GQLSVGLDGKKLEPESN 136 (340)
Q Consensus 83 ~v~~s~~~~l~~~------~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~~~~s~ 136 (340)
.|.|++....... -.....|.+..|.-.... -++|+- +-..+.+.+ .....-
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~--~~~~g~ 279 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG--GPGGGW 279 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC--CCCCee
Confidence 9999874321110 001112333322110000 001110 000011111 112356
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
+|| |.||..+.+|..|+++|+.||-|+.|++.++- +|| +||.+.+-++|..|+..|||+.+.++ .|.|+
T Consensus 280 ciF--vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf-gFVtMtNYdEAamAi~sLNGy~lg~r---vLQVs 353 (360)
T KOG0145|consen 280 CIF--VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF-GFVTMTNYDEAAMAIASLNGYRLGDR---VLQVS 353 (360)
T ss_pred EEE--EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccce-eEEEecchHHHHHHHHHhcCccccce---EEEEE
Confidence 777 66999999999999999999999999987532 476 99999999999999999999999999 99999
Q ss_pred eecC
Q 019494 212 YSRH 215 (340)
Q Consensus 212 ~ak~ 215 (340)
|...
T Consensus 354 FKtn 357 (360)
T KOG0145|consen 354 FKTN 357 (360)
T ss_pred EecC
Confidence 9543
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.5e-19 Score=171.98 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=130.6
Q ss_pred ccccCCCCCCCHHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 8 SRKYLQWQLSASGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 8 ~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
.-+|++ -.++|++|+++|+++|.|++|++.+. .+-+||||.|.+.++|.+|+++||... +.|++|+|-|
T Consensus 2 ~sl~vg-~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~---------~~~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG-PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDV---------LKGKPIRIMW 71 (369)
T ss_pred CceecC-CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcc---------cCCcEEEeeh
Confidence 458999 44457999999999999999988762 256789999999999999999999887 5799999999
Q ss_pred ccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE
Q 019494 87 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 166 (340)
Q Consensus 87 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~ 166 (340)
|.... + . |+|.||++.++..+|+++|+.||+|+.
T Consensus 72 s~rd~-------------------------------------------~-~--~~i~nl~~~~~~~~~~d~f~~~g~ilS 105 (369)
T KOG0123|consen 72 SQRDP-------------------------------------------S-L--VFIKNLDESIDNKSLYDTFSEFGNILS 105 (369)
T ss_pred hccCC-------------------------------------------c-e--eeecCCCcccCcHHHHHHHHhhcCeeE
Confidence 88651 1 1 569999999999999999999999999
Q ss_pred EEEEcCCCC--eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494 167 IAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 220 (340)
Q Consensus 167 v~i~~~~~g--~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~ 220 (340)
|++..+..| .+ ||+|++.++|.+|++.|||..+.++ .|.|.....+..+.
T Consensus 106 ~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 106 CKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFERKEERE 157 (369)
T ss_pred EEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeeccchhhhc
Confidence 998766543 24 9999999999999999999999998 99998776655443
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=3.2e-20 Score=170.58 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=129.3
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
=++|+|++.+.-+ |+.||..|.+||.|.+|.+-. .+.|+||||||+-.|.|+-|++.|||.. ++|
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m---------lGG 182 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---------LGG 182 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc---------ccC
Confidence 3789999988866 899999999999999997743 4567789999999999999999999987 589
Q ss_pred ceEEEeeccCC---cccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494 80 CTLRITYSAHT---DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 156 (340)
Q Consensus 80 ~~l~v~~s~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~ 156 (340)
+.|+|.....- .-.++...... .+--.|||..+..+.+++||+.
T Consensus 183 RNiKVgrPsNmpQAQpiID~vqeeA---------------------------------k~fnRiYVaSvHpDLSe~DiKS 229 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQAQPIIDMVQEEA---------------------------------KKFNRIYVASVHPDLSETDIKS 229 (544)
T ss_pred ccccccCCCCCcccchHHHHHHHHH---------------------------------HhhheEEeeecCCCccHHHHHH
Confidence 99999843311 00011000000 1112367888889999999999
Q ss_pred HHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 157 VFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 157 ~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+|+.||+|++|.+-+ +.+|+ +||+|.+..+...|+..||-..+.|+ -|||.-+
T Consensus 230 VFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVGk~ 287 (544)
T KOG0124|consen 230 VFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKC 287 (544)
T ss_pred HHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHHhhhcchhhcccc---eEecccc
Confidence 999999999999853 44676 99999999999999999999999998 8888743
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.8e-18 Score=166.26 Aligned_cols=174 Identities=18% Similarity=0.216 Sum_probs=131.8
Q ss_pred cccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
-||++.++- +.++|.++|+.+|.|..+.+.. +...+|+||+|.=.|++++|+...++.. +.|+.|
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k---------f~Gr~l 77 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK---------FEGRIL 77 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc---------ccceec
Confidence 356666652 2589999999999999987765 2356789999999999999999999987 479999
Q ss_pred EEeeccCCcccc--cccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494 83 RITYSAHTDLSV--KFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 156 (340)
Q Consensus 83 ~v~~s~~~~l~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~ 156 (340)
+|..++++...- .... .+.....++.- ....-+...|. |.|||+.+..++|..
T Consensus 78 ~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k-------------------~~v~~~k~rLI--IRNLPf~~k~~dLk~ 136 (678)
T KOG0127|consen 78 NVDPAKKRARSEEVEKGENKAVEKPIEQKRPTK-------------------AKVDLPKWRLI--IRNLPFKCKKPDLKN 136 (678)
T ss_pred ccccccccccchhcccccchhhhcccccCCcch-------------------hhccCccceEE--eecCCcccCcHHHHH
Confidence 999998653211 1000 00000000000 00001133444 999999999999999
Q ss_pred HHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 157 VFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 157 ~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+|++||.|..|.|+++. .|| |||+|.+..+|..|++.+||.+|.|+ +|-|+||-.+
T Consensus 137 vFs~~G~V~Ei~IP~k~dgklcGF-aFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVDWAV~K 196 (678)
T KOG0127|consen 137 VFSNFGKVVEIVIPRKKDGKLCGF-AFVQFKEKKDAEKALEFFNGNKIDGR---PVAVDWAVDK 196 (678)
T ss_pred HHhhcceEEEEEcccCCCCCccce-EEEEEeeHHHHHHHHHhccCceecCc---eeEEeeeccc
Confidence 99999999999999765 367 99999999999999999999999999 9999999544
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5e-18 Score=163.15 Aligned_cols=195 Identities=21% Similarity=0.303 Sum_probs=132.5
Q ss_pred cccccccCCCCCCCHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 5 WPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 5 ~~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
|-|..=+|+|.|.. +||+.+|+.||.|.+|.|.++ .. +||||+|.+..+|..|++.+||..| .|+
T Consensus 118 ~rLIIRNLPf~~k~-~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i---------~gR 186 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKK-PDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKI---------DGR 186 (678)
T ss_pred ceEEeecCCcccCc-HHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCcee---------cCc
Confidence 34555578999987 699999999999999999773 34 5799999999999999999999996 699
Q ss_pred eEEEeeccCCcccccc--------------------cCcCCcCCCCCCC---CCCCCccCcC--------------CCcc
Q 019494 81 TLRITYSAHTDLSVKF--------------------QSHRSRDYTNPYL---PVAPSAIDAS--------------GQLS 123 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~--------------------~~~~~~~~~~~~~---~~~~~~~~~~--------------~~~~ 123 (340)
+|.|.|+-.++..-.. .++...++.+-+. .......|+. .+..
T Consensus 187 ~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vD 266 (678)
T KOG0127|consen 187 PVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVD 266 (678)
T ss_pred eeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccc
Confidence 9999998765432110 1111111110000 0000000100 0000
Q ss_pred ccC-CCC--------C-----CCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCC
Q 019494 124 VGL-DGK--------K-----LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPD 184 (340)
Q Consensus 124 ~~~-~~~--------~-----~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~ 184 (340)
-.. ++. . ......++| |.||++++|+++|.++|++||+|..+.|+.. +.|. |||+|.+
T Consensus 267 d~e~S~~~~~~k~~q~k~~~en~~~~~tVF--vRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGt-AFv~Fkt 343 (678)
T KOG0127|consen 267 DEESSGKKESDKKAQNKTTRENITEGKTVF--VRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGT-AFVKFKT 343 (678)
T ss_pred cccccccCcccchhccccccccccccceEE--EecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccc-eEEEecc
Confidence 000 000 0 001125555 9999999999999999999999999887542 2464 9999999
Q ss_pred hHHHHHHHHHh-----cC-CeeCCCCccEEEEEeecCC
Q 019494 185 VQTAVVAKEAL-----EG-HCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 185 ~~~A~~A~~~l-----ng-~~i~~~~~~~l~v~~ak~~ 216 (340)
..+|..||++. .| ..|.|+ .|+|..+-..
T Consensus 344 ~~~~~~ci~~Aspa~e~g~~ll~GR---~Lkv~~Av~R 378 (678)
T KOG0127|consen 344 QIAAQNCIEAASPASEDGSVLLDGR---LLKVTLAVTR 378 (678)
T ss_pred HHHHHHHHHhcCccCCCceEEEecc---EEeeeeccch
Confidence 99999999987 34 567888 9999988543
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=170.28 Aligned_cols=165 Identities=19% Similarity=0.330 Sum_probs=132.5
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeec-------CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT-------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~-------~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
+++|+.|+..+ .++|..+|+..|.|.+|.|.++. +.+||||+|.+.++|++|++.|+|..| .
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---------d 586 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---------D 586 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---------c
Confidence 34777666633 68999999999999999876633 237899999999999999999999985 6
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|..|.|++|..+..... .+... .....+.|+ |.|++...+..++++||
T Consensus 587 GH~l~lk~S~~k~~~~~---gK~~~---------------------------~kk~~tKIl--VRNipFeAt~rEVr~LF 634 (725)
T KOG0110|consen 587 GHKLELKISENKPASTV---GKKKS---------------------------KKKKGTKIL--VRNIPFEATKREVRKLF 634 (725)
T ss_pred CceEEEEeccCcccccc---ccccc---------------------------cccccceee--eeccchHHHHHHHHHHH
Confidence 99999999882211100 00000 001134566 89999999999999999
Q ss_pred cccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 159 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 159 ~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+.||.|..|+|+.+ .+|| |||+|-+..+|..|+++|..+.++|+ .|.+.|++...
T Consensus 635 ~aFGqlksvRlPKK~~k~a~rGF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVLEwA~~d~ 694 (725)
T KOG0110|consen 635 TAFGQLKSVRLPKKIGKGAHRGF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVLEWAKSDN 694 (725)
T ss_pred hcccceeeeccchhhcchhhccc-eeeeccCcHHHHHHHHhhcccceech---hhheehhccch
Confidence 99999999999876 2677 99999999999999999999999999 99999998764
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.9e-17 Score=146.84 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=69.7
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++++.|| |..||.+..+.||.++|-.||.|++.|+|-++ +-| +||.|++..+|+.||.+|||..|.-+ +
T Consensus 283 PeGCNlF--IYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF-GFVSfDNp~SaQaAIqAMNGFQIGMK---R 356 (371)
T KOG0146|consen 283 PEGCNLF--IYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF-GFVSFDNPASAQAAIQAMNGFQIGMK---R 356 (371)
T ss_pred CCcceEE--EEeCchhhccHHHHHHhccccceeeeeeeehhccccccce-eeEecCCchhHHHHHHHhcchhhhhh---h
Confidence 5678888 66999999999999999999999999987533 334 99999999999999999999999988 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.+.++++.
T Consensus 357 LKVQLKRPkda 367 (371)
T KOG0146|consen 357 LKVQLKRPKDA 367 (371)
T ss_pred hhhhhcCcccc
Confidence 99998666654
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=9.7e-16 Score=154.31 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=65.4
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++.+ |++|+++|+.||+|.++++.+ +.+++||||+|.+.++|.+|++.|||.. ++|+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e---------lgGr 274 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGGQ 274 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe---------eCCe
Confidence 368999999854 899999999999999999886 2367799999999999999999999998 4799
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
.|+|.++..
T Consensus 275 ~LrV~kAi~ 283 (612)
T TIGR01645 275 YLRVGKCVT 283 (612)
T ss_pred EEEEEecCC
Confidence 999998763
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.7e-16 Score=152.45 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=126.4
Q ss_pred cccCCCCCC--CHHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
.+||.|+.. |.++|+++|+.||+|.+|++.. ..+++| ||+|.++++|++|++.|||.. +.+++|+|
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~l---------l~~kki~v 147 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGML---------LNGKKIYV 147 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcc---------cCCCeeEE
Confidence 378888774 3689999999999999998887 337788 999999999999999999987 57999999
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 164 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 164 (340)
.....+.............+ -.|+|.|....++++.|.+.|+.+|.|
T Consensus 148 g~~~~~~er~~~~~~~~~~~---------------------------------t~v~vk~~~~~~~~~~l~~~f~~~g~i 194 (369)
T KOG0123|consen 148 GLFERKEEREAPLGEYKKRF---------------------------------TNVYVKNLEEDSTDEELKDLFSAYGSI 194 (369)
T ss_pred eeccchhhhcccccchhhhh---------------------------------hhhheeccccccchHHHHHhhcccCcc
Confidence 87665432211111011111 115578888899999999999999999
Q ss_pred eEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 165 QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 165 ~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
+.+.+..+ .+++ +||+|++.++|..|++.||+....+. .+.|.-+..
T Consensus 195 ~s~~v~~~~~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V~~aqk 245 (369)
T KOG0123|consen 195 TSVAVMRDSIGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDK---ELYVGRAQK 245 (369)
T ss_pred eEEEEeecCCCCCCCc-cceeecChhHHHHHHHhccCCcCCcc---ceeeccccc
Confidence 99998753 3565 99999999999999999999998877 777776544
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.2e-15 Score=128.94 Aligned_cols=169 Identities=19% Similarity=0.235 Sum_probs=125.8
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+...+||++|++.| |.||++||.+||.|.+|.+... ..-.||||||+|..+|+.||..-+|.. +.++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYd---------ydg~r 74 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD---------YDGCR 74 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccc---------cCcce
Confidence 45679999999998 8999999999999999988653 234579999999999999999999988 46999
Q ss_pred EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCC-CCCCC--CcEEEEEeecCCCCCCHHHHHHHH
Q 019494 82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK-KLEPE--SNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|+|+|...-.-. +.+.-.+.. .+ .-++.+. .--++ .....|.|..||.+-++++|++..
T Consensus 75 LRVEfprggr~s----~~~~G~y~g------------gg--rgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm 136 (241)
T KOG0105|consen 75 LRVEFPRGGRSS----SDRRGSYSG------------GG--RGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM 136 (241)
T ss_pred EEEEeccCCCcc----cccccccCC------------CC--CCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH
Confidence 999998744211 000000000 00 0001000 00112 233556689999999999999999
Q ss_pred cccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 159 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.+-|.|....+.++ | .+.|+|...|+...|+..|..+.+...
T Consensus 137 ReaGdvCfadv~rD--g-~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 137 REAGDVCFADVQRD--G-VGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred HhhCCeeeeeeecc--c-ceeeeeeehhhHHHHHHhhccccccCc
Confidence 99999998877765 4 499999999999999999998877554
No 36
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=6.4e-16 Score=134.07 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=123.2
Q ss_pred ccccCCCCCCC--HHHHHHhhccc-CceeEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAF-GFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~f-G~V~~v~~~~~~----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.-||++.++.| -.||+.||.+| |.-....-+..+ .+..|||+|.+..+|..|++.|||..+++ -.+.
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp------E~~s 108 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP------ETGS 108 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc------ccCc
Confidence 34799999987 78999999999 554433222211 23579999999999999999999999862 4688
Q ss_pred eEEEeeccCCcccccccCcC----C------------c----CCC-----CCCC------CCCCCccCcC--C-------
Q 019494 81 TLRITYSAHTDLSVKFQSHR----S------------R----DYT-----NPYL------PVAPSAIDAS--G------- 120 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~----~------------~----~~~-----~~~~------~~~~~~~~~~--~------- 120 (340)
+|+|++++......+..... + + +.+ +|+. ..+....+.. .
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 99999988432111100000 0 0 000 0000 0000000000 0
Q ss_pred ----CccccC---CCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHH
Q 019494 121 ----QLSVGL---DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193 (340)
Q Consensus 121 ----~~~~~~---~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~ 193 (340)
.....| .+......+.+|| |.||..+||||+|+.+|++|-.+..++|-.+.+-..||++|++.+.|..|+.
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlf--ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLF--IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHh--hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHH
Confidence 000000 0111223456777 8999999999999999999999999888776644579999999999999999
Q ss_pred HhcCCeeCCC
Q 019494 194 ALEGHCIYDG 203 (340)
Q Consensus 194 ~lng~~i~~~ 203 (340)
.|+|..|...
T Consensus 267 ~lqg~~~s~~ 276 (284)
T KOG1457|consen 267 HLQGNLLSSS 276 (284)
T ss_pred Hhhcceeccc
Confidence 9999887543
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.63 E-value=5.4e-15 Score=142.94 Aligned_cols=201 Identities=18% Similarity=0.213 Sum_probs=134.9
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
..|+.|+|++|+-. +|++|+.+|++||.|..|.+.+ +.+++|+||+|.+.++|.+|++.|||.+ +
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe---------l 345 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE---------L 345 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce---------e
Confidence 35777899999874 4899999999999999998876 3477889999999999999999999966 5
Q ss_pred CCceEEEeeccCC-cccccccCcCCcCCC---CC------------C--------CCCCC-Ccc----------CcCCCc
Q 019494 78 GPCTLRITYSAHT-DLSVKFQSHRSRDYT---NP------------Y--------LPVAP-SAI----------DASGQL 122 (340)
Q Consensus 78 ~~~~l~v~~s~~~-~l~~~~~~~~~~~~~---~~------------~--------~~~~~-~~~----------~~~~~~ 122 (340)
.|+.|+|..-..+ +...........|.. .- + ++... .+. ...+..
T Consensus 346 AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 425 (549)
T KOG0147|consen 346 AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVV 425 (549)
T ss_pred cCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCc
Confidence 7999998764422 110000000000000 00 0 00000 000 000000
Q ss_pred cc-----cCCCCCCCCCCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHH
Q 019494 123 SV-----GLDGKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 187 (340)
Q Consensus 123 ~~-----~~~~~~~~~~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~ 187 (340)
.+ ....+....++++++ +.|+-..-| .|++.+-+++||+|..|.+.+.+-|+ .||.|.+.+.
T Consensus 426 ~~~~~~p~~~~p~~~i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~-VYvrc~s~~~ 502 (549)
T KOG0147|consen 426 RVRSVDPADASPAFDIPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGC-VYVRCPSAEA 502 (549)
T ss_pred CccccCccccccccCCccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCce-EEEecCcHHH
Confidence 00 000111225677877 667643222 34677778999999999887766675 9999999999
Q ss_pred HHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 188 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 188 A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
|.+|+.+|||..+.++ .|..+|-......
T Consensus 503 A~~a~~alhgrWF~gr---~Ita~~~~~~~Y~ 531 (549)
T KOG0147|consen 503 AGTAVKALHGRWFAGR---MITAKYLPLERYH 531 (549)
T ss_pred HHHHHHHHhhhhhccc---eeEEEEeehhhhh
Confidence 9999999999999999 9999997665543
No 38
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6.1e-15 Score=138.67 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=66.0
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CC---eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+.+..|| |.+||.+.-+.+|-..|..||.|+..++|-++ .+ +++||.|++..+|..||..|||..|..+ +|
T Consensus 422 peGanlf--iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~K---rl 496 (510)
T KOG0144|consen 422 PEGANLF--IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK---RL 496 (510)
T ss_pred CCcccee--eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccc---cc
Confidence 3455677 77999999999999999999999999987544 22 2599999999999999999999999999 89
Q ss_pred EEEeec
Q 019494 209 HISYSR 214 (340)
Q Consensus 209 ~v~~ak 214 (340)
+|.+.+
T Consensus 497 kVQlk~ 502 (510)
T KOG0144|consen 497 KVQLKR 502 (510)
T ss_pred eEEeee
Confidence 998643
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.59 E-value=3.2e-15 Score=144.53 Aligned_cols=155 Identities=20% Similarity=0.331 Sum_probs=119.0
Q ss_pred CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCccc
Q 019494 18 ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 93 (340)
Q Consensus 18 ~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~ 93 (340)
.+.||+++|+.+|+|.+|+++. +.+++.|||||.|.++...|| .|.|+. +-|-+|.|+.+......
T Consensus 192 ~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr---------llg~pv~vq~sEaeknr 261 (549)
T KOG0147|consen 192 PPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR---------LLGVPVIVQLSEAEKNR 261 (549)
T ss_pred CchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc---------ccCceeEecccHHHHHH
Confidence 3689999999999999998875 347778999999999999999 899988 46999999876532111
Q ss_pred ccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-
Q 019494 94 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK- 172 (340)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~- 172 (340)
.. +.. .+. .+.....+-.. ++|+||..++|+++|+.+|+.||.|+.|.+...
T Consensus 262 ~a-~~s--------------~a~----------~~k~~~~p~~r--l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 262 AA-NAS--------------PAL----------QGKGFTGPMRR--LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HH-hcc--------------ccc----------cccccccchhh--hhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 00 000 000 00000111111 559999999999999999999999999987544
Q ss_pred ----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 173 ----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 173 ----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
.+|| +||+|.+.++|.+|++.|||.+|-|+ .|+|+..
T Consensus 315 ~tG~skgf-Gfi~f~~~~~ar~a~e~lngfelAGr---~ikV~~v 355 (549)
T KOG0147|consen 315 ETGRSKGF-GFITFVNKEDARKALEQLNGFELAGR---LIKVSVV 355 (549)
T ss_pred ccccccCc-ceEEEecHHHHHHHHHHhccceecCc---eEEEEEe
Confidence 2576 99999999999999999999999999 8888865
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=4.7e-15 Score=130.58 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=119.4
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
+.|+||+.++-. |+||+.+|..||.|.+|.+.. +|+||+|.|..+|..||..||++.+ .+..+.|
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l---------~~e~~vv 67 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKEL---------CGERLVV 67 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCcee---------cceeeee
Confidence 357899888754 799999999999999998753 3699999999999999999999985 4555888
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCC--CCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL--EPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
++++...-... +... .+ ..+|..... .-...+++ |.|+...+++.+|.+.|+++|
T Consensus 68 e~~r~~~~~~g----~~~~------------g~-----r~~~~~~~~~p~~s~~r~~--~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 68 EHARGKRRGRG----RPRG------------GD-----RRSDSRRYRPPSRTHFRLI--VRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred ecccccccccC----CCCC------------CC-----ccchhhccCCcccccceee--eccchhhhhHHHHhhhhcccC
Confidence 88774311100 0000 00 000000000 01234555 789999999999999999999
Q ss_pred CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 163 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 163 ~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
.+..+.+ ..++ +||+|++.++|.+|++.|++..+.+. .|.+.
T Consensus 125 ~~~~~~~---~~~~-~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~ 166 (216)
T KOG0106|consen 125 EVTYVDA---RRNF-AFVEFSEQEDAKRALEKLDGKKLNGR---RISVE 166 (216)
T ss_pred CCchhhh---hccc-cceeehhhhhhhhcchhccchhhcCc---eeeec
Confidence 9965545 3344 99999999999999999999999987 88883
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=4.7e-14 Score=118.62 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=67.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++.|+ |.||+.++|+++|+++|++||.|++|+|..+ ++|| |||+|++.++|++|++.||+..|.++ .|+
T Consensus 34 ~~~lf--VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGf-aFV~F~~~e~A~~Al~~lng~~i~Gr---~l~ 107 (144)
T PLN03134 34 STKLF--IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF-GFVNFNDEGAATAAISEMDGKELNGR---HIR 107 (144)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence 45566 8899999999999999999999999998643 3576 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|++++.+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998754
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.1e-14 Score=126.11 Aligned_cols=78 Identities=14% Similarity=0.342 Sum_probs=70.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++.++|+|+.|...|+-|+|++.|.+||+|.+.+|++ |++|+ +||.|-.+++|+.||+.|||..|.++ .||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~MnGqWlG~R---~IR 135 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQMNGQWLGRR---TIR 135 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce-eEEeccchHHHHHHHHHhCCeeeccc---eee
Confidence 4578899999999999999999999999999999875 45675 99999999999999999999999999 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
..||..+
T Consensus 136 TNWATRK 142 (321)
T KOG0148|consen 136 TNWATRK 142 (321)
T ss_pred ccccccC
Confidence 9999544
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.52 E-value=1.2e-13 Score=128.89 Aligned_cols=164 Identities=12% Similarity=0.121 Sum_probs=119.8
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...+||+.+.. +||.|++.|++||+|.++++++ +.+.+|+||+|.+.+...+++..-.- ++.++
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h----------~~dgr 75 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH----------KLDGR 75 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc----------ccCCc
Confidence 34567765553 3799999999999999999998 34667899999999999988863221 14577
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
.|.+.-+..++...+.. ....++.++|+.|+..+++++|++.|++
T Consensus 76 ~ve~k~av~r~~~~~~~-----------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~ 120 (311)
T KOG4205|consen 76 SVEPKRAVSREDQTKVG-----------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQ 120 (311)
T ss_pred cccceeccCcccccccc-----------------------------------cccceeEEEecCcCCCCchHHHhhhhhc
Confidence 66666554332211100 0112344558899999999999999999
Q ss_pred cCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494 161 FGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 220 (340)
Q Consensus 161 fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~ 220 (340)
||.|..+.++. +.+|| +||.|.++++..+++. ..-+.|.++ .+.|.-|-+++...
T Consensus 121 ~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk---~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 121 FGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK---KVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeEeeEEeecccccccccc-eeeEeccccccceecc-cceeeecCc---eeeEeeccchhhcc
Confidence 99998887653 33677 9999999999988875 477788888 78888777766543
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.46 E-value=1.8e-13 Score=99.69 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=59.2
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
|+|+|||.++|+++|+++|+.||.|..+++..+ .++ +|||+|++.++|.+|++.|||..+.++ .||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKG-YAFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccc-eEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 569999999999999999999999999998774 234 599999999999999999999999987 664
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.45 E-value=3.1e-13 Score=113.64 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=65.5
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||.+++.+ |++|+++|++||+|.+|.+.+ ..+++||||+|.+.|+|++|++.||+..| .++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---------~Gr 104 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---------NGR 104 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence 457899999854 999999999999999998875 23577899999999999999999999984 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 105 ~l~V~~a~~~ 114 (144)
T PLN03134 105 HIRVNPANDR 114 (144)
T ss_pred EEEEEeCCcC
Confidence 9999998754
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.9e-12 Score=128.69 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=124.1
Q ss_pred cCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeecc
Q 019494 11 YLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 88 (340)
Q Consensus 11 ~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~ 88 (340)
.+.|++.. +++|...|.+||+|.+|.+.+ .|..|.|+|.+..+|.+|...|....+ ...++++.++.
T Consensus 389 l~kNlpa~t~~~elt~~F~~fG~i~rvllp~--~G~~aiv~fl~p~eAr~Afrklaysr~---------k~~plyle~aP 457 (725)
T KOG0110|consen 389 LVKNLPAGTLSEELTEAFLRFGEIGRVLLPP--GGTGAIVEFLNPLEARKAFRKLAYSRF---------KSAPLYLEWAP 457 (725)
T ss_pred eeccCccccccHHHHHHhhcccccceeecCc--ccceeeeeecCccchHHHHHHhchhhh---------ccCccccccCh
Confidence 44566643 689999999999999996553 444599999999999999999998774 57788888776
Q ss_pred CCcccccccCcCCcCCCCCCCCC-CC------CccCcC---C-CccccC--C-CCCCCCCCcEEEEEeecCCCCCCHHHH
Q 019494 89 HTDLSVKFQSHRSRDYTNPYLPV-AP------SAIDAS---G-QLSVGL--D-GKKLEPESNVLLASIENMQYAVTLDVL 154 (340)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~-~~------~~~~~~---~-~~~~~~--~-~~~~~~~s~vl~v~v~nl~~~vt~~~L 154 (340)
...+.-. .++.++.+-.... .. ++.++. . .++-+. . ........++|+ |.||....|.++|
T Consensus 458 ~dvf~~~---pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lf--vkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 458 EDVFTED---PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLF--VKNLNFDTTLEDL 532 (725)
T ss_pred hhhccCC---ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhh--hhcCCcccchhHH
Confidence 4432210 0000000000000 00 000000 0 000000 0 000001112255 8899999999999
Q ss_pred HHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 155 HMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 155 ~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
..+|+..|.|..+.|-.++ .|| |||+|.+.++|+.|++.|+|+.|.|. .|.|.++.
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH---~l~lk~S~ 596 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH---KLELKISE 596 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc---eEEEEecc
Confidence 9999999999999886433 276 99999999999999999999999999 99999998
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.6e-13 Score=112.48 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=68.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|||+||+..+++.||+.+|+.||.|..|.|-....|| |||||+|..+|..|+..|+|..|.|. .|+|++++-..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf-AFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~~ 86 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF-AFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGRP 86 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc-eEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCCc
Confidence 7899999999999999999999999999988777787 99999999999999999999999998 99999986543
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=9.4e-13 Score=92.46 Aligned_cols=56 Identities=38% Similarity=0.611 Sum_probs=51.3
Q ss_pred HHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 154 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 154 L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
|+++|++||+|++|++.+++++ +|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~-~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG-FAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT-EEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 7899999999999999987745 599999999999999999999999998 9999996
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.9e-12 Score=116.45 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=63.8
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
...|+|+.....| |+||+.+|+.||+|.+|.+.+ +..++|+||||.+..+-..||..||=.. ++|
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD---------LGG 279 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD---------LGG 279 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh---------ccc
Confidence 3468999887766 899999999999999999987 4567899999999999999999999655 689
Q ss_pred ceEEEeecc
Q 019494 80 CTLRITYSA 88 (340)
Q Consensus 80 ~~l~v~~s~ 88 (340)
.-|||..+-
T Consensus 280 QyLRVGk~v 288 (544)
T KOG0124|consen 280 QYLRVGKCV 288 (544)
T ss_pred ceEeccccc
Confidence 999988654
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=1e-12 Score=92.25 Aligned_cols=56 Identities=36% Similarity=0.542 Sum_probs=50.0
Q ss_pred HHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494 22 RAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 87 (340)
Q Consensus 22 L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s 87 (340)
|+++|++||+|.+|.+.++. +++|||+|.+.++|++|++.|||..+ .|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~---------~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQF---------NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEE---------TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEC
Confidence 78999999999999998754 46899999999999999999999985 6999999986
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.4e-12 Score=124.71 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
...++|+ |.||++++|+++|+++|+.||+|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 105 ~~~~~Lf--VgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGy-aFVeF~~~e~A~~Ai~~LnG~~l~gr---~ 178 (346)
T TIGR01659 105 NSGTNLI--VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGY-AFVDFGSEADSQRAIKNLNGITVRNK---R 178 (346)
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcE-EEEEEccHHHHHHHHHHcCCCccCCc---e
Confidence 3456666 8999999999999999999999999998653 2465 99999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 019494 208 LHISYSRHT 216 (340)
Q Consensus 208 l~v~~ak~~ 216 (340)
|+|+|+++.
T Consensus 179 i~V~~a~p~ 187 (346)
T TIGR01659 179 LKVSYARPG 187 (346)
T ss_pred eeeeccccc
Confidence 999998753
No 52
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7.7e-13 Score=101.89 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=70.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+++|+ |.|||..+|.|+..+||.+||.|..|+|-..+ +|. |||.|+|..+|.+|+++|+|+.+.++ .|.|-|
T Consensus 18 nriLy--irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGT-AFVVYedi~dAk~A~dhlsg~n~~~r---yl~vly 91 (124)
T KOG0114|consen 18 NRILY--IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGT-AFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLY 91 (124)
T ss_pred heeEE--EecCCccccHHHHHHHhhcccceEEEEecCccCcCce-EEEEehHhhhHHHHHHHhcccccCCc---eEEEEe
Confidence 56666 99999999999999999999999999986433 575 99999999999999999999999999 999999
Q ss_pred ecCCCCc
Q 019494 213 SRHTDLS 219 (340)
Q Consensus 213 ak~~~~~ 219 (340)
-.+.+..
T Consensus 92 yq~~~~~ 98 (124)
T KOG0114|consen 92 YQPEDAF 98 (124)
T ss_pred cCHHHHH
Confidence 8766543
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-12 Score=115.13 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=69.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
.+.++. |.||++++++++|++||.+||.|.+|.+.+.+ +|| |||.|.++++|++|++.|||+-.++= .|
T Consensus 188 D~~tvR--vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---IL 261 (270)
T KOG0122|consen 188 DEATVR--VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---IL 261 (270)
T ss_pred ccceeE--EecCccccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---EE
Confidence 456677 78999999999999999999999999986543 677 99999999999999999999988887 99
Q ss_pred EEEeecCC
Q 019494 209 HISYSRHT 216 (340)
Q Consensus 209 ~v~~ak~~ 216 (340)
+|+|||++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999985
No 54
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.33 E-value=1.2e-10 Score=116.75 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=69.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|++|| |+.++.++++.+|.++|+.||+|++|.+....+ ||||.+..+.+|.+|+.+|+++.+.++ .|+|.|+.
T Consensus 421 SrTLw--vG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLW--VGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAV 493 (894)
T ss_pred eeeee--eccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeeec
Confidence 67888 899999999999999999999999998776554 799999999999999999999999999 99999996
Q ss_pred CCCC
Q 019494 215 HTDL 218 (340)
Q Consensus 215 ~~~~ 218 (340)
..-.
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5543
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.3e-12 Score=107.40 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=66.0
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
.+++|++|+... +.||+.+|..||.|.+|.+.+...+ ||||||+|..+|+.|+.+|||+.| .|..|+|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~---------cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDI---------CGSRIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccc---------cCceEEE
Confidence 468899999965 8999999999999999998875444 699999999999999999999995 6999999
Q ss_pred eeccCC
Q 019494 85 TYSAHT 90 (340)
Q Consensus 85 ~~s~~~ 90 (340)
++|+-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 998844
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=8.5e-12 Score=91.36 Aligned_cols=66 Identities=32% Similarity=0.465 Sum_probs=57.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
|+|.|||.++|+++|+++|+.||.|.+|++...+ ++ +|||+|.+.++|.+|++.++|..+.|+ .|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~-~a~v~f~~~~~a~~al~~~~~~~~~g~---~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRG-FAFVEFSSEEDAKRALELLNGKEIDGR---KLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCC-EEEEEeCCHHHHHHHHHHCCCcEECCE---EcC
Confidence 4589999999999999999999999999988764 35 499999999999999999999999987 654
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=112.03 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=64.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
|+|+||++.+|+++|+++|+.||+|++|.|...+ +|| |||+|++.++|..|+. |||..|.++ .|+|+.+..-
T Consensus 7 VfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~Gf-AFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~a~~~ 80 (260)
T PLN03120 7 VKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQI-AYVTFKDPQGAETALL-LSGATIVDQ---SVTITPAEDY 80 (260)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEeccCC
Confidence 4499999999999999999999999999987643 566 9999999999999995 999999999 9999986543
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.29 E-value=5e-12 Score=92.01 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=55.4
Q ss_pred ccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
|||++++.+ +++|+++|++||.|..+.+..+ ..+++|||+|.+.++|++|++.|||..+ .+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---------~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---------NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---------CccCcC
Confidence 577777754 8999999999999999988773 4566899999999999999999999884 687775
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.5e-12 Score=100.04 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=64.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
|++++ |+||...+|||+|++||+++|+|.+|.|--++ -|| |||+|.++++|..|+..++|+.++.+ .|+
T Consensus 36 S~tvy--VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGF-CFVeyy~~~dA~~AlryisgtrLddr---~ir 109 (153)
T KOG0121|consen 36 SCTVY--VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGF-CFVEYYSRDDAEDALRYISGTRLDDR---PIR 109 (153)
T ss_pred cceEE--EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccce-EEEEEecchhHHHHHHHhccCccccc---cee
Confidence 66655 99999999999999999999999999874321 366 99999999999999999999999999 999
Q ss_pred EEe
Q 019494 210 ISY 212 (340)
Q Consensus 210 v~~ 212 (340)
|+|
T Consensus 110 ~D~ 112 (153)
T KOG0121|consen 110 IDW 112 (153)
T ss_pred eec
Confidence 997
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.25 E-value=2e-10 Score=105.86 Aligned_cols=185 Identities=17% Similarity=0.244 Sum_probs=121.1
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCcee--------EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVH--------KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 73 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~--------~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~ 73 (340)
+..+||+++|.| -+++.++|+.+|.|. +|.+.+ +.-++-|++.|-..|+..-|++.|++..
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~------ 207 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE------ 207 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc------
Confidence 456899999976 788999999999984 356655 3345569999999999999999999988
Q ss_pred CCCCCCceEEEeeccCC---cccccccCc-CCcCCCCCCCCCCCCccCcCCCccccCCCCC-----CCCCCcEEEEEeec
Q 019494 74 PENMGPCTLRITYSAHT---DLSVKFQSH-RSRDYTNPYLPVAPSAIDASGQLSVGLDGKK-----LEPESNVLLASIEN 144 (340)
Q Consensus 74 ~~~~~~~~l~v~~s~~~---~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~vl~v~v~n 144 (340)
++|++|+|+.++-. +........ +..+... +.+.. +...+|.... ......|+ +.|
T Consensus 208 ---~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk--~~k~q-------~k~~dw~pd~~~~sk~r~~~tVi---~kn 272 (382)
T KOG1548|consen 208 ---LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKK--LKKQQ-------QKLLDWRPDRDDPSKARADRTVI---LKN 272 (382)
T ss_pred ---ccCcEEEEehhhhhhccCcCcccccccccccHHH--HHHHH-------HhhcccCCCccccccccCCcEEE---eee
Confidence 47999999987632 111100000 0000000 00000 0000111100 01112333 455
Q ss_pred CCC----CCC-------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 145 MQY----AVT-------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 145 l~~----~vt-------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+-. .-+ .++|++-+++||.|.+|+++.+. .|. +-|.|.+.++|..|++.|+|..+.|+ .|..+.
T Consensus 273 ~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGv-vtV~f~n~eeA~~ciq~m~GR~fdgR---ql~A~i 348 (382)
T KOG1548|consen 273 MFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGV-VTVSFRNNEEADQCIQTMDGRWFDGR---QLTASI 348 (382)
T ss_pred cCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCce-eEEEeCChHHHHHHHHHhcCeeecce---EEEEEE
Confidence 421 223 45567779999999999998544 465 99999999999999999999999999 888776
Q ss_pred ecCC
Q 019494 213 SRHT 216 (340)
Q Consensus 213 ak~~ 216 (340)
..-+
T Consensus 349 ~DG~ 352 (382)
T KOG1548|consen 349 WDGK 352 (382)
T ss_pred eCCc
Confidence 5433
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=3.4e-11 Score=117.99 Aligned_cols=178 Identities=15% Similarity=0.229 Sum_probs=121.7
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
++|+++++.. ++.++++.+.||.+....+++ +.+++|||.||.|......|+..|||+. +++++|
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~---------lgd~~l 361 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ---------LGDKKL 361 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh---------hcCcee
Confidence 4577766643 789999999999998887776 3678899999999999999999999998 468999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCC--CCC-C-------HH
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ--YAV-T-------LD 152 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~--~~v-t-------~~ 152 (340)
-|+.+-........+.. .+++.+.+--...... ...++.||. ..|+- .+. + .|
T Consensus 362 vvq~A~~g~~~~~~~~~-----------~~~~~~~~i~~~~~q~----~g~~t~Vl~--L~n~Vt~deLkdd~EyeeIlE 424 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFN-----------ISQSQVPGIPLLMTQM----AGIPTEVLC--LTNVVTPDELKDDEEYEEILE 424 (500)
T ss_pred EeehhhccchhccccCC-----------ccccccccchhhhccc----CCCcchhhh--hhhcCCHHHhcchHHHHHHHH
Confidence 99987644322211100 0000000000000000 113466666 34541 111 1 12
Q ss_pred HHHHHHcccCCeeEEEEEcC-C-------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 153 VLHMVFSAFGPVQKIAMFDK-N-------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 153 ~L~~~F~~fG~v~~v~i~~~-~-------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+++.-|++||.|..|+|.+. . -| ..||+|.|.+++++|.++|+|.++.++ +|.++|-...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~G-kVFVefas~ed~qrA~~~L~GrKF~nR---tVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTG-KVFVEFADTEDSQRAMEELTGRKFANR---TVVASYYDED 492 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcc-cEEEEecChHHHHHHHHHccCceeCCc---EEEEEecCHH
Confidence 35556899999999998754 1 13 589999999999999999999999999 9999986543
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.24 E-value=1.4e-10 Score=111.32 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=104.9
Q ss_pred CCCCCCCHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494 12 LQWQLSASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 89 (340)
Q Consensus 12 l~~~~~~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~ 89 (340)
|+|.+|+ +||+++|+.++ |.++++.+. +..+-|||||.++|++++|++. +-.. ++.+=|.|--+..
T Consensus 18 LPwsat~-~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~---------mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 18 LPWSATE-KEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRES---------MGHRYIEVFTAGG 85 (510)
T ss_pred CCccccH-HHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHH---------hCCceEEEEccCC
Confidence 7999995 99999999995 577766652 2333499999999999999973 3333 4566677766554
Q ss_pred CcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-
Q 019494 90 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA- 168 (340)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~- 168 (340)
.+...- ..+ .+........|+. +..||+.||++||.++|+--=.|....
T Consensus 86 ~e~d~~--~~~--------------------------~g~~s~~~d~vVR--LRGLPfscte~dI~~FFaGL~Iv~~gi~ 135 (510)
T KOG4211|consen 86 AEADWV--MRP--------------------------GGPNSSANDGVVR--LRGLPFSCTEEDIVEFFAGLEIVPDGIL 135 (510)
T ss_pred cccccc--ccC--------------------------CCCCCCCCCceEE--ecCCCccCcHHHHHHHhcCCccccccee
Confidence 432110 000 0000001234555 789999999999999999876665522
Q ss_pred EEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 169 MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 169 i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
++.. ..| .|||+|++.+.|++|+.. |...|..+ -|.|--|.
T Consensus 136 l~~d~rgR~tG-EAfVqF~sqe~ae~Al~r-hre~iGhR---YIEvF~Ss 180 (510)
T KOG4211|consen 136 LPMDQRGRPTG-EAFVQFESQESAEIALGR-HRENIGHR---YIEVFRSS 180 (510)
T ss_pred eeccCCCCccc-ceEEEecCHHHHHHHHHH-HHHhhccc---eEEeehhH
Confidence 2221 234 599999999999999976 66667776 67666543
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=3.7e-11 Score=115.04 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=68.8
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCCh--HHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~--~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
...|||+||.+.||+++|+.+|+.||.|.+|.|++.+ +|| |||+|.+. .++.+|+..|||..+.|+ .|+|.-|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGF-AFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCce-EEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeec
Confidence 3557799999999999999999999999999988643 677 99999976 789999999999999999 9999999
Q ss_pred cCC
Q 019494 214 RHT 216 (340)
Q Consensus 214 k~~ 216 (340)
|+.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 866
No 64
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.3e-11 Score=106.30 Aligned_cols=74 Identities=23% Similarity=0.436 Sum_probs=67.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|.|.||.+.+|.|+|+.+|++||.|-.|.|..+ .+|| |||.|.+..+|+.|+++|+|..|+|+ .|+|.+++
T Consensus 16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrVq~ar 91 (256)
T KOG4207|consen 16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQMAR 91 (256)
T ss_pred EEecceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeeehhhh
Confidence 448999999999999999999999999999754 3687 99999999999999999999999999 99999987
Q ss_pred CCC
Q 019494 215 HTD 217 (340)
Q Consensus 215 ~~~ 217 (340)
-..
T Consensus 92 ygr 94 (256)
T KOG4207|consen 92 YGR 94 (256)
T ss_pred cCC
Confidence 543
No 65
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=7.7e-12 Score=108.61 Aligned_cols=79 Identities=18% Similarity=0.420 Sum_probs=71.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.++|. |++|.++||+..|+..|-.||.|..|.|+- +.||| |||+|+..|+|.+|+..||+.+|+|+ +|+
T Consensus 10 KrtlY--VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---tir 83 (298)
T KOG0111|consen 10 KRTLY--VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---TIR 83 (298)
T ss_pred ceeEE--eccchHHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---eEE
Confidence 44544 999999999999999999999999999863 55787 99999999999999999999999999 999
Q ss_pred EEeecCCCCc
Q 019494 210 ISYSRHTDLS 219 (340)
Q Consensus 210 v~~ak~~~~~ 219 (340)
|.|+++...+
T Consensus 84 VN~AkP~kik 93 (298)
T KOG0111|consen 84 VNLAKPEKIK 93 (298)
T ss_pred EeecCCcccc
Confidence 9999987644
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.5e-11 Score=112.60 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=65.0
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
.|||++||+-. |-||+..|++||+|.+|.|+- +.+|+|+||+|.+.+||++|.++|||..| .||+|.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V---------EGRkIE 167 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV---------EGRKIE 167 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee---------eceEEE
Confidence 48999999954 699999999999999886543 66788999999999999999999999985 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|.-+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9988755
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=8.2e-11 Score=84.84 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=60.0
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
|+|.|++..+++++|+++|+.||.|.++.+.... .| +|||+|.+.++|.+|++.++|..+.++ .|+|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKG-FAFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCc-eEEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 4589999999999999999999999999987654 45 499999999999999999999999887 7765
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=6.2e-11 Score=108.53 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=66.8
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE---cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF---DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~---~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
..|+|.|+|...-|.||+.+|++||+|..|.|+ +.++|| |||.|++.++|.+|.++|||+.|.|+ +|+|.-+.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~AT 172 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNNAT 172 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEeccc
Confidence 334489999999999999999999999999964 344687 99999999999999999999999999 99999886
Q ss_pred CC
Q 019494 215 HT 216 (340)
Q Consensus 215 ~~ 216 (340)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 55
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=103.54 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=63.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+.+++ |.||++.+|+++|+++|+.||+|.+|+|.++. +++ |||+|++.++|..|+ .|||..|.++ .|.|.-
T Consensus 5 g~TV~--V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gf-AfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~ 77 (243)
T PLN03121 5 GYTAE--VTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACT-AYVTFKDAYALETAV-LLSGATIVDQ---RVCITR 77 (243)
T ss_pred ceEEE--EecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceE-EEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEe
Confidence 44555 89999999999999999999999999998654 344 999999999999999 6999999999 888885
Q ss_pred ec
Q 019494 213 SR 214 (340)
Q Consensus 213 ak 214 (340)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 44
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=4e-11 Score=95.92 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=64.2
Q ss_pred ccccccccCCCCC--CCHHHHHHhhcccCceeEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 4 IWPLSRKYLQWQL--SASGERAHVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 4 ~~~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~----~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
++.++-+|++|+. ++||.|++||+++|+|.+|++= ++..=+||||+|.+.++|..|+++++|.. +
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr---------L 103 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR---------L 103 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc---------c
Confidence 4567789999998 5699999999999999999762 23444579999999999999999999998 4
Q ss_pred CCceEEEeecc
Q 019494 78 GPCTLRITYSA 88 (340)
Q Consensus 78 ~~~~l~v~~s~ 88 (340)
..++|+|.|-.
T Consensus 104 ddr~ir~D~D~ 114 (153)
T KOG0121|consen 104 DDRPIRIDWDA 114 (153)
T ss_pred cccceeeeccc
Confidence 69999998743
No 71
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.6e-10 Score=82.87 Aligned_cols=65 Identities=26% Similarity=0.456 Sum_probs=57.8
Q ss_pred eecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
|.||+..+++++|+++|+.||.|.++.+...+ +|+ |||+|.+.++|.+|++.|++..+.++ .|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGF-AFVEFESEEDAEKALEALNGKELDGR---PLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCce-EEEEeCCHHHHHHHHHHcCCCeeCCc---EEEe
Confidence 46899999999999999999999999987643 354 99999999999999999999999888 7776
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.14 E-value=1.3e-10 Score=101.75 Aligned_cols=82 Identities=29% Similarity=0.494 Sum_probs=72.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHH----HHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHM----VFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~----~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++.+|. |.||.+.+..++|+. ||++||+|..|+.++ +-+| +|||.|.+.+.|..|+.+|+|..++|+ .
T Consensus 8 pn~TlY--InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG-QA~VvFk~~~~As~A~r~l~gfpFygK---~ 81 (221)
T KOG4206|consen 8 PNGTLY--INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG-QAFVVFKETEAASAALRALQGFPFYGK---P 81 (221)
T ss_pred CCceEe--ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC-ceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence 455655 999999999999888 999999999999874 4467 599999999999999999999999999 9
Q ss_pred EEEEeecCCCCccc
Q 019494 208 LHISYSRHTDLSIK 221 (340)
Q Consensus 208 l~v~~ak~~~~~~~ 221 (340)
|+|.||+.+...+.
T Consensus 82 mriqyA~s~sdii~ 95 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIA 95 (221)
T ss_pred hheecccCccchhh
Confidence 99999998876554
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=4e-10 Score=81.60 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=61.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
|+|.||+..+++++|+++|+.||.|.++.+.... .|+ |||+|.+.++|..|++.+++..+.++ .|+|.|
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~-~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGF-AFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 4589999999999999999999999999987643 454 99999999999999999999999888 888764
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.13 E-value=1.4e-10 Score=84.92 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=54.4
Q ss_pred ccCCCCCCC--HHHHHHhhcccCceeEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~---~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
|||++++.+ ++||+++|+.||.|.+|.+.+.+ .+++|||+|.+.++|.+|++.+++..+ .|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---------~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---------DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---------CCEEcC
Confidence 467777744 89999999999999999988742 356799999999999999999998874 687764
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.13 E-value=1.5e-10 Score=104.88 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=62.6
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
...+|++|++. +|+||+++|+.||+|.+|.+.+. ..+++|||+|.+.++|+.|+. |||..| .|+.|+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l---------~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATI---------VDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCee---------CCceEE
Confidence 35689988884 48999999999999999998763 345689999999999999995 999984 699999
Q ss_pred EeeccC
Q 019494 84 ITYSAH 89 (340)
Q Consensus 84 v~~s~~ 89 (340)
|..+..
T Consensus 74 Vt~a~~ 79 (260)
T PLN03120 74 ITPAED 79 (260)
T ss_pred EEeccC
Confidence 998764
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.09 E-value=2e-10 Score=110.05 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=66.7
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCH--HHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDT--ETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~--e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
..||||+++.- +++||+.+|+.||.|.+|.|++.+.++||||+|.+. +++.+||..|||.. +.|+.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE---------WKGR~L 80 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV---------WKGGRL 80 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe---------ecCcee
Confidence 46899999884 489999999999999999998866678999999987 78999999999998 579999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|+.++..
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99998855
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.09 E-value=3e-09 Score=100.82 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=121.3
Q ss_pred ccCCCCCCC--HHHHHHhhccc-CceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQLSA--SGERAHVFSAF-GFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~f-G~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+||.|++-| =.||++||.+- |+|.-|.++- .+.+++|.|||+++|.+++|++.||-.+ +.|++|.
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~---------~~GR~l~ 117 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE---------VNGRELV 117 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc---------ccCceEE
Confidence 788888865 47899999765 9999986654 4566789999999999999999999887 5799999
Q ss_pred EeeccCCc------cccc----c--c--CcCCcCCCC-----------CCCCCCCCccC-cCCCccc-------------
Q 019494 84 ITYSAHTD------LSVK----F--Q--SHRSRDYTN-----------PYLPVAPSAID-ASGQLSV------------- 124 (340)
Q Consensus 84 v~~s~~~~------l~~~----~--~--~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~------------- 124 (340)
|..-...+ +... + . ..-.++..+ ........... ..+..+.
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 87543210 0000 0 0 000000000 00000000000 0000000
Q ss_pred c----CC--CCCCCCC-CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc----CCCCeEEEEEcCChHHHHHHHH
Q 019494 125 G----LD--GKKLEPE-SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKE 193 (340)
Q Consensus 125 ~----~~--~~~~~~~-s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~~A~~ 193 (340)
+ +. -....+| ...+| |.||.+.|..+.|++.|.-.|+|+.|-+-- +++|+ +.|+|++.-+|.+|+.
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~f--vanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~-~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVF--VANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF-AVIEYDHPVEAVQAIS 274 (608)
T ss_pred cchhhhhhhccCCCCCccceee--eeccccccchHHHHHHhccceeeeeeceeeccccccCCe-eEEEecchHHHHHHHH
Confidence 0 00 0011222 44445 899999999999999999999999887522 34676 9999999999999999
Q ss_pred HhcCCeeCCCCccEEEEEee
Q 019494 194 ALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 194 ~lng~~i~~~~~~~l~v~~a 213 (340)
.|++.-+++. ++.+.+.
T Consensus 275 ml~~~g~~~~---~~~~Rl~ 291 (608)
T KOG4212|consen 275 MLDRQGLFDR---RMTVRLD 291 (608)
T ss_pred hhccCCCccc---cceeecc
Confidence 9998777776 6666653
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=99.15 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=95.6
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..++||++++.+ |++|+++|..||.|..|.+.. +..+++|||+|.+.++|..|++.++|..+ .|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---------~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---------EGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---------CCc
Confidence 378999999865 899999999999998887755 35677899999999999999999999884 699
Q ss_pred eEEEeeccC-CcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 81 TLRITYSAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 81 ~l~v~~s~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
+|+|.++.. ..............+. ... ..........+..+. +.+++..++.+++..+|.
T Consensus 186 ~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 186 PLRVQKAQPASQPRSELSNNLDASFA-KKL---------------SRGKALLLEKSDNLY--VGNLPLKTAEEELADLFK 247 (306)
T ss_pred eeEeeccccccccccccccccchhhh-ccc---------------cccccccccccceee--ccccccccchhHHHHhcc
Confidence 999999653 1000000000000000 000 000000011233444 889999999999999999
Q ss_pred ccCCeeEEEEEcCC
Q 019494 160 AFGPVQKIAMFDKN 173 (340)
Q Consensus 160 ~fG~v~~v~i~~~~ 173 (340)
.+|.+..+.+....
T Consensus 248 ~~~~~~~~~~~~~~ 261 (306)
T COG0724 248 SRGDIVRASLPPSK 261 (306)
T ss_pred ccccceeeeccCCC
Confidence 99999777765433
No 79
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=1.7e-10 Score=104.12 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=65.5
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
++|+|||.++++.+|+.||++||+|+++.|++. +|||+.+|...|..|+.+|||+.|.|. .|+|+-||.+
T Consensus 5 LFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK 74 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK 74 (346)
T ss_pred hhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence 349999999999999999999999999999853 799999999999999999999999999 9999999876
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=6.6e-10 Score=80.00 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=55.9
Q ss_pred cccCCCCCC--CHHHHHHhhcccCceeEEEEeeec--CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~--~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
++||.+++. ++++|+++|++||.|.++.+.... ..++|||+|.+.++|++|++.++|..+ .+++|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---------~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL---------GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE---------CCEEEee
Confidence 467777764 379999999999999999887632 346899999999999999999999874 5888776
Q ss_pred e
Q 019494 85 T 85 (340)
Q Consensus 85 ~ 85 (340)
+
T Consensus 72 ~ 72 (72)
T smart00362 72 E 72 (72)
T ss_pred C
Confidence 3
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=2.6e-10 Score=100.32 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=56.5
Q ss_pred ccccC---CCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 8 SRKYL---QWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 8 ~~~~l---~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..||+ .|++.+ |+|++.|++||+|.+.+++. +++|+|+||+|+|.|+|.+|++.-| .| +.||
T Consensus 13 TKifVggL~w~T~~-~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi--------IdGR 81 (247)
T KOG0149|consen 13 TKIFVGGLAWETHK-ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI--------IDGR 81 (247)
T ss_pred EEEEEcCcccccch-HHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc--------cccc
Confidence 34666 555565 89999999999999987765 4588899999999999999998544 33 6788
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
+..|..+.-
T Consensus 82 ~aNcnlA~l 90 (247)
T KOG0149|consen 82 KANCNLASL 90 (247)
T ss_pred ccccchhhh
Confidence 888877653
No 82
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=8.3e-10 Score=81.17 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=48.3
Q ss_pred HHHHHHhhc----ccCceeEEE--Eee-----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 19 SGERAHVFS----AFGFVHKIT--TFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 19 ee~L~~lF~----~fG~V~~v~--~~~-----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
++||+++|+ .||.|.+|. ++. +.++++|||+|.+.++|.+|++.|||+.+ .|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---------~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---------DGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEeC
Confidence 578888888 999999984 333 23577899999999999999999999985 68888763
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1.5e-09 Score=77.70 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHhhcccCceeEEEEeeec----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 13 QWQLSASGERAHVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 13 ~~~~~~ee~L~~lF~~fG~V~~v~~~~~~----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
++..+ +++|+++|+.||.|.++.+.+.. .+++|||+|.+.++|.+|++.|++..+ .++.|+|+
T Consensus 5 ~~~~~-~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---------~~~~~~v~ 71 (71)
T smart00360 5 PPDVT-EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---------DGRPLKVK 71 (71)
T ss_pred CcccC-HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---------CCcEEEeC
Confidence 44444 69999999999999999887632 356899999999999999999998774 58887763
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=3.2e-10 Score=97.82 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=60.4
Q ss_pred cCCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 11 YLQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
+|.+.++ -++|+.+|++||.|.+|-|.+ +...+||||.|.+..+|+.|++.|+|..+ .|+.|+|++
T Consensus 20 NLTyRTs-pd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---------dgRelrVq~ 89 (256)
T KOG4207|consen 20 NLTYRTS-PDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---------DGRELRVQM 89 (256)
T ss_pred ceeccCC-HHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---------ccceeeehh
Confidence 5555555 599999999999999998865 45677899999999999999999999984 699999999
Q ss_pred ccCC
Q 019494 87 SAHT 90 (340)
Q Consensus 87 s~~~ 90 (340)
++-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8843
No 85
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5.9e-10 Score=94.63 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=64.4
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+||+|||..|-+.+|++||.+||.|..|.+-...+ .| |||+|+|..+|..||..-+|+.+++- .|+|+|+..-.
T Consensus 9 iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-afVeFEd~RDAeDAiygRdGYdydg~---rLRVEfprggr 84 (241)
T KOG0105|consen 9 IYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-AFVEFEDPRDAEDAIYGRDGYDYDGC---RLRVEFPRGGR 84 (241)
T ss_pred EEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-eEEEecCccchhhhhhcccccccCcc---eEEEEeccCCC
Confidence 55999999999999999999999999998754332 34 99999999999999999999998874 99999976543
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.00 E-value=5.4e-10 Score=94.69 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=65.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|||+||++.+|++.|+++|-+.|.|+++.|.+. .+|+ |||+|.++|+|.-|++.||..+|+|+ +|+|.-+.
T Consensus 12 iyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGy-gF~Ef~~eedadYAikiln~VkLYgr---pIrv~kas 87 (203)
T KOG0131|consen 12 LYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGY-GFAEFRTEEDADYAIKILNMVKLYGR---PIRVNKAS 87 (203)
T ss_pred EEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccce-eEEEEechhhhHHHHHHHHHHHhcCc---eeEEEecc
Confidence 559999999999999999999999999999753 3676 99999999999999999999999999 99998776
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8.2e-10 Score=85.28 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=64.3
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
+.|||.|++-+ .||..+||.+||.|..|++-. +..++-|||.|+|..+|.+|++.|+|.. +.++-|.|
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n---------~~~ryl~v 89 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN---------VDNRYLVV 89 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc---------cCCceEEE
Confidence 45688777743 689999999999999998854 4455679999999999999999999988 46999999
Q ss_pred eeccCCcccc
Q 019494 85 TYSAHTDLSV 94 (340)
Q Consensus 85 ~~s~~~~l~~ 94 (340)
-|.+..+...
T Consensus 90 lyyq~~~~~~ 99 (124)
T KOG0114|consen 90 LYYQPEDAFK 99 (124)
T ss_pred EecCHHHHHH
Confidence 9988654433
No 88
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.2e-09 Score=96.48 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=56.1
Q ss_pred CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 18 ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 18 ~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
+|+||++||.+||.|.+|-+.+ +.+++||||.|.+.++|.+||+.|||.-+ ..--|+|+||+.+
T Consensus 202 ~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---------d~LILrvEwskP~ 269 (270)
T KOG0122|consen 202 REDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---------DNLILRVEWSKPS 269 (270)
T ss_pred ChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---------ceEEEEEEecCCC
Confidence 3799999999999999997776 34778899999999999999999999874 4667999999864
No 89
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=7.8e-11 Score=99.68 Aligned_cols=70 Identities=23% Similarity=0.445 Sum_probs=64.7
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+|||+||++.+||.+|..+||+||+|+.|.+.++ +.|| ||+.|+|..+..-|+..|||..|.|+ +|+|+-
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---tirVDH 111 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH 111 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---eEEeee
Confidence 4679999999999999999999999999998864 3577 99999999999999999999999999 999984
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=87.59 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=64.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+-+|| |.++.+..|+|++++.|..||+|+.|.+--+. +| ||+|+|++.++|++|++.|||..|.++ .|.
T Consensus 72 GwIi~--VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KG-YaLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 72 GWIIF--VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKG-YALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred eEEEE--EeccCcchhHHHHHHHHhhcccccceeeccccccccccc-eeeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 44566 77999999999999999999999999874332 24 599999999999999999999999999 888
Q ss_pred EEeec
Q 019494 210 ISYSR 214 (340)
Q Consensus 210 v~~ak 214 (340)
|.|.-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 88864
No 91
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.1e-08 Score=97.34 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=64.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.+.+| |+.||.++.||+|.-||++-|+|-+++|+.+ ++|+ |||.|.+.++|++|++.||+++|..+ ..|.
T Consensus 83 G~EVf--vGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~ig 157 (506)
T KOG0117|consen 83 GCEVF--VGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPG--KLLG 157 (506)
T ss_pred CceEE--ecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCC--CEeE
Confidence 55555 9999999999999999999999999997643 4675 99999999999999999999999754 3777
Q ss_pred EEee
Q 019494 210 ISYS 213 (340)
Q Consensus 210 v~~a 213 (340)
|+.|
T Consensus 158 vc~S 161 (506)
T KOG0117|consen 158 VCVS 161 (506)
T ss_pred EEEe
Confidence 7766
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=95.28 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=62.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++.-.|+|++|+++.+.|.|++.|++||+|++.+++.+ ++|+ |||.|.|.++|.+|.+.-| -.|+|+ +..
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGy-GfVTf~d~~aa~rAc~dp~-piIdGR---~aN 84 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGY-GFVTFRDAEAATRACKDPN-PIIDGR---KAN 84 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccce-eeEEeecHHHHHHHhcCCC-Cccccc---ccc
Confidence 34445669999999999999999999999999887643 3575 9999999999999998755 368888 777
Q ss_pred EEeecC
Q 019494 210 ISYSRH 215 (340)
Q Consensus 210 v~~ak~ 215 (340)
|.+|..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 777654
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.94 E-value=2.2e-09 Score=95.87 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=59.0
Q ss_pred cccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 9 RKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 9 ~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
-+|++|+.. +|+||+++|+.||+|.+|.+.+ +..+++|||+|.+.++|+.|+ .|+|..| .+++|.|.
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l---------~d~~I~It 76 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI---------VDQRVCIT 76 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee---------CCceEEEE
Confidence 367777773 3899999999999999999887 345568999999999999999 7999985 58889988
Q ss_pred ecc
Q 019494 86 YSA 88 (340)
Q Consensus 86 ~s~ 88 (340)
-..
T Consensus 77 ~~~ 79 (243)
T PLN03121 77 RWG 79 (243)
T ss_pred eCc
Confidence 655
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=4.3e-09 Score=95.52 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=69.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+-++|| |.-|++.++|..|+..|+.||.|++|.|+.. ++|+ |||+|++..+..+|.+..+|..|+++ .|
T Consensus 100 Py~TLF--v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGY-AFIeye~erdm~~AYK~adG~~Idgr---ri 173 (335)
T KOG0113|consen 100 PYKTLF--VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGY-AFIEYEHERDMKAAYKDADGIKIDGR---RI 173 (335)
T ss_pred ccceee--eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccce-EEEEeccHHHHHHHHHhccCceecCc---EE
Confidence 467888 8889999999999999999999999998753 4675 99999999999999999999999999 88
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
-|++-....+
T Consensus 174 ~VDvERgRTv 183 (335)
T KOG0113|consen 174 LVDVERGRTV 183 (335)
T ss_pred EEEecccccc
Confidence 8887655443
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=4.4e-09 Score=95.30 Aligned_cols=75 Identities=27% Similarity=0.521 Sum_probs=66.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
..+|+ |+||+..+|+++|+++|..||.|.+|.+..+ .+|+ |||+|.+.++|..|++.++|..|.++ .|+
T Consensus 115 ~~~l~--v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~-~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~ 188 (306)
T COG0724 115 NNTLF--VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGF-AFVEFESEESAEKAIEELNGKELEGR---PLR 188 (306)
T ss_pred CceEE--EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCce-EEEEecCHHHHHHHHHHcCCCeECCc---eeE
Confidence 35555 9999999999999999999999999887543 3576 99999999999999999999999999 999
Q ss_pred EEeecC
Q 019494 210 ISYSRH 215 (340)
Q Consensus 210 v~~ak~ 215 (340)
|.++..
T Consensus 189 v~~~~~ 194 (306)
T COG0724 189 VQKAQP 194 (306)
T ss_pred eecccc
Confidence 999653
No 96
>smart00361 RRM_1 RNA recognition motif.
Probab=98.91 E-value=3.8e-09 Score=77.63 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=47.7
Q ss_pred HHHHHHHHc----ccCCeeEEE-E-Ec------CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 151 LDVLHMVFS----AFGPVQKIA-M-FD------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 151 ~~~L~~~F~----~fG~v~~v~-i-~~------~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+++|+++|+ .||.|.+|. + .. .++|+ |||+|.+.++|.+|++.|||..+.|+ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999985 3 32 23676 99999999999999999999999998 7775
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.91 E-value=6.9e-09 Score=75.01 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=56.5
Q ss_pred ccCCCCCC--CHHHHHHhhcccCceeEEEEeeec---CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 10 KYLQWQLS--ASGERAHVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 10 ~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~---~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
+||.+++. ++++|+++|+.||.|.++.+.+.. ..++|||+|.+.++|..|++.+++..+ .++.+.|
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---------~~~~~~v 72 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---------GGRPLRV 72 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence 56666664 479999999999999999887632 356899999999999999999999874 5888887
Q ss_pred ee
Q 019494 85 TY 86 (340)
Q Consensus 85 ~~ 86 (340)
++
T Consensus 73 ~~ 74 (74)
T cd00590 73 EF 74 (74)
T ss_pred eC
Confidence 64
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=2.1e-09 Score=109.63 Aligned_cols=157 Identities=22% Similarity=0.213 Sum_probs=126.6
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.+.-||++++..+ +.+|+..|+.+|+|.+|.|.. +..-.||||.|.+...+-+|+-++.+..| ...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I---------~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI---------GNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc---------ccC
Confidence 3456799998865 899999999999999998765 23334699999999999999999999886 233
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
.+++.+...+ ..+++-++ ++.|..++....|...|..
T Consensus 442 ~~r~glG~~k-----------------------------------------st~ttr~~--sgglg~w~p~~~l~r~fd~ 478 (975)
T KOG0112|consen 442 THRIGLGQPK-----------------------------------------STPTTRLQ--SGGLGPWSPVSRLNREFDR 478 (975)
T ss_pred cccccccccc-----------------------------------------cccceeec--cCCCCCCChHHHHHHHhhc
Confidence 4555544321 01245566 8899999999999999999
Q ss_pred cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 161 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 161 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
||.|..|.+-.... +|+|+|++...|+.|++.|-|..|.+. ...|+|.|++...
T Consensus 479 fGpir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 479 FGPIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPPG 532 (975)
T ss_pred cCcceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCCC
Confidence 99999887765443 799999999999999999999999876 5689999997654
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=6.1e-09 Score=101.58 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=66.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|+|+|+++++++|+|.++|+..|.|..+++..+ .+|| ||++|.+.++|..|++.|||+++.++ +|+|.|+.
T Consensus 21 v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v~~~~ 96 (435)
T KOG0108|consen 21 VFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGR---KLRVNYAS 96 (435)
T ss_pred eEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCc---eEEeeccc
Confidence 449999999999999999999999999997643 2566 99999999999999999999999999 99999996
Q ss_pred CCC
Q 019494 215 HTD 217 (340)
Q Consensus 215 ~~~ 217 (340)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 553
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.84 E-value=5.4e-07 Score=91.06 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
+.-|||+.+++. |.||+++|+.||+|.+|.++. ..++|||.+....+|.+|+..|++.. +.++.|+|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~k---------v~~k~Iki 489 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVK---------VADKTIKI 489 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhccc---------ccceeeEE
Confidence 344788888854 899999999999999998876 44579999999999999999999877 47999999
Q ss_pred eeccCCc
Q 019494 85 TYSAHTD 91 (340)
Q Consensus 85 ~~s~~~~ 91 (340)
.|+..+.
T Consensus 490 ~Wa~g~G 496 (894)
T KOG0132|consen 490 AWAVGKG 496 (894)
T ss_pred eeeccCC
Confidence 9987653
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=5.1e-10 Score=94.80 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=63.0
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+.=|||++++-+ |.||.-+|++||+|++|.+++ +++++|||+.|.|..+-.-|++.|||..| .|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---------~gR 105 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---------LGR 105 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---------cce
Confidence 345799999855 899999999999999999987 45788999999999999999999999885 699
Q ss_pred eEEEee
Q 019494 81 TLRITY 86 (340)
Q Consensus 81 ~l~v~~ 86 (340)
+|+|..
T Consensus 106 tirVDH 111 (219)
T KOG0126|consen 106 TIRVDH 111 (219)
T ss_pred eEEeee
Confidence 999975
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=5.8e-09 Score=84.33 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=57.7
Q ss_pred ccCCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
||+.++. ++||||.+.|..||+|.+|.+.- +-.|+||+|||.+.++|++|++.|||..+ -+.+|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---------l~q~v~ 145 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---------LGQNVS 145 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---------hCCcee
Confidence 4555544 34899999999999999997642 23577899999999999999999999985 588899
Q ss_pred Eeecc
Q 019494 84 ITYSA 88 (340)
Q Consensus 84 v~~s~ 88 (340)
|.|+-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 98864
No 103
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.5e-08 Score=93.93 Aligned_cols=83 Identities=22% Similarity=0.420 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-C---eEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 130 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-G---LQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 130 ~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
...||.+||| |-.|.+-+|+|+|+-|||+||+|..+.+.+..+ | .+|||+|++.++..+|.=.|++.-|+.+
T Consensus 234 d~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-- 309 (479)
T KOG0415|consen 234 DVKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-- 309 (479)
T ss_pred ccCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc--
Confidence 3468899999 556666788999999999999999999876442 3 3799999999999999999999999999
Q ss_pred cEEEEEeecCCC
Q 019494 206 CKLHISYSRHTD 217 (340)
Q Consensus 206 ~~l~v~~ak~~~ 217 (340)
.|+|.||..-+
T Consensus 310 -RIHVDFSQSVs 320 (479)
T KOG0415|consen 310 -RIHVDFSQSVS 320 (479)
T ss_pred -eEEeehhhhhh
Confidence 99999986544
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.9e-08 Score=91.38 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=63.3
Q ss_pred ccccccCCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
|..-|||.-+. |+|.+|+..|+.||+|.+|++++ +++++||||+|.++.+...|.+..+|..| .|
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---------dg 170 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---------DG 170 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee---------cC
Confidence 34456776555 44899999999999999999887 46788999999999999999999999986 59
Q ss_pred ceEEEeeccC
Q 019494 80 CTLRITYSAH 89 (340)
Q Consensus 80 ~~l~v~~s~~ 89 (340)
+.|-|.+-..
T Consensus 171 rri~VDvERg 180 (335)
T KOG0113|consen 171 RRILVDVERG 180 (335)
T ss_pred cEEEEEeccc
Confidence 9999988653
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.2e-09 Score=90.68 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=64.2
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
-||++.+..+ |.-|...|-+||.|.+|.+.- .+.++||||||...|+|..||+.||+.+++ |++|
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---------Grti 82 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---------GRTI 82 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---------ceeE
Confidence 4699888755 788999999999999997743 234567999999999999999999999964 9999
Q ss_pred EEeeccCCccc
Q 019494 83 RITYSAHTDLS 93 (340)
Q Consensus 83 ~v~~s~~~~l~ 93 (340)
+|.|++..++.
T Consensus 83 rVN~AkP~kik 93 (298)
T KOG0111|consen 83 RVNLAKPEKIK 93 (298)
T ss_pred EEeecCCcccc
Confidence 99999866543
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=2.4e-08 Score=97.42 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=66.2
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+.+|+++++-+ ||+|.++|+..|.|.++++.. ++.++|||++|.+.|+|.+|++.|||.++ .|++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---------~gr~ 89 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---------NGRK 89 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---------CCce
Confidence 77899999965 899999999999999998765 45677899999999999999999999994 7999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|.|+...
T Consensus 90 l~v~~~~~~ 98 (435)
T KOG0108|consen 90 LRVNYASNR 98 (435)
T ss_pred EEeeccccc
Confidence 999998744
No 107
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=3.8e-08 Score=91.15 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=65.1
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc-CCeeCCCCccEEEEEeec
Q 019494 136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln-g~~i~~~~~~~l~v~~ak 214 (340)
....+||++|-..++|.+|++.|.+||+|..|+++..++ ||||+|.++++|+.|.+.+- ...|.|. +|+|.|++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEEEEeCC
Confidence 344466999988999999999999999999999988776 89999999999999986654 4466777 99999998
Q ss_pred C
Q 019494 215 H 215 (340)
Q Consensus 215 ~ 215 (340)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=6.6e-09 Score=101.39 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=110.3
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
.-|.|-+++.+ +++|+++|+.||+|.+|+.-.. ..+.+||+|.|..+|++|+++|++.+| .++.|+..
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~---------~~~~~k~~ 145 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREI---------AGKRIKRP 145 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHh---------hhhhhcCC
Confidence 34555566644 7999999999999999866543 445799999999999999999999996 47776633
Q ss_pred eccCCcccccccCcCC--cCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494 86 YSAHTDLSVKFQSHRS--RDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 163 (340)
Q Consensus 86 ~s~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 163 (340)
.+....... +.... .++..+.+ . .+..+|. .+++ +..|.+.++..-++.+|+.+|.
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~~~p~a----~------s~pgg~~------~~~~----~g~l~P~~s~~~~~~~~~~~~~ 203 (549)
T KOG4660|consen 146 GGARRAMGL--QSGTSFLNHFGSPLA----N------SPPGGWP------RGQL----FGMLSPTRSSILLEHISSVDGS 203 (549)
T ss_pred Ccccccchh--cccchhhhhccchhh----c------CCCCCCc------CCcc----eeeeccchhhhhhhcchhccCc
Confidence 322221110 00000 00000000 0 0000111 1222 2238888888888999999998
Q ss_pred eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494 164 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 164 v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
+..=.....+. +-|++|.+..+++.+...+ |..+.+. ..-++|+.+..+
T Consensus 204 ~~~~~~~~~~h--q~~~~~~~~~s~a~~~~~~-G~~~s~~---~~v~t~S~~~g~ 252 (549)
T KOG4660|consen 204 SPGRETPLLNH--QRFVEFADNRSYAFSEPRG-GFLISNS---SGVITFSGPGGV 252 (549)
T ss_pred cccccccchhh--hhhhhhccccchhhcccCC-ceecCCC---CceEEecCCCcc
Confidence 87722333444 6899999999997777644 6677776 677888877443
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.1e-07 Score=85.10 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=68.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
.+.|| |+-|...-+|||++.+|..||.|+++.+.+.. +| ||||+|.+..+|..||..|+|....-+-...|.|
T Consensus 19 drklf--vgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKG-CAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 19 DRKLF--VGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKG-CAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred chhhh--hhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCC-ceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 45677 77777889999999999999999999987632 45 6999999999999999999999765443568999
Q ss_pred EeecCCCCc
Q 019494 211 SYSRHTDLS 219 (340)
Q Consensus 211 ~~ak~~~~~ 219 (340)
+|++....+
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 999766543
No 110
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.56 E-value=1.6e-07 Score=89.19 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=61.3
Q ss_pred EEeecCCCCCCHHHHHHHHc-ccCCeeEEEEEc----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 140 ASIENMQYAVTLDVLHMVFS-AFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~-~fG~v~~v~i~~----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
|||.|+|+++.+++|++||. +-|+|+.|.++- |.+| ||.|||+++|.+++|++.||.+++.++ +|+|+-
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rG-cavVEFk~~E~~qKa~E~lnk~~~~GR---~l~vKE 120 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARG-CAVVEFKDPENVQKALEKLNKYEVNGR---ELVVKE 120 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCC-ceEEEeeCHHHHHHHHHHhhhccccCc---eEEEec
Confidence 66999999999999999995 588999999763 3456 699999999999999999999999999 888873
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=6.4e-08 Score=94.64 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=62.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+...|+ |.||+..||+++|+.+|+.||+|..|..-..++|. .||+|-|..+|++|+++||+.+|.++ .|+
T Consensus 74 ~~~~L~--v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~-~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 74 NQGTLV--VFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGI-VFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred ccceEE--EEecCCcCCHHHHHHHHHhhcchhhhhcccccCce-EEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 356677 77999999999999999999999998876666674 99999999999999999999999998 666
No 112
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4.8e-08 Score=85.19 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=65.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC---eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
..+|+ |.|+...||||-|.++|-.-|.|.||.|...+.+ | |||.|+++-+..-|++.+||..++++ .++|+
T Consensus 9 drtl~--v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kF-a~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~ 82 (267)
T KOG4454|consen 9 DRTLL--VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKF-AYVFFPNENSVQLAGQLENGDDLEED---EEQRT 82 (267)
T ss_pred hhHHH--HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCce-eeeecccccchhhhhhhcccchhccc---hhhcc
Confidence 55666 8999999999999999999999999999764422 5 99999999999999999999999999 88888
Q ss_pred eec
Q 019494 212 YSR 214 (340)
Q Consensus 212 ~ak 214 (340)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 754
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=2e-07 Score=86.38 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=60.4
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
-|||+++-.+ |.||++.|.+||+|..|+++.+ +++|||+|.+.++|+.|.+..-+..+ +.|++|+|.|
T Consensus 230 tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~~n~lv--------I~G~Rl~i~W 299 (377)
T KOG0153|consen 230 TLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKSFNKLV--------INGFRLKIKW 299 (377)
T ss_pred EEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhhcceee--------ecceEEEEEe
Confidence 4688776544 8999999999999999998874 34799999999999999987777654 7899999999
Q ss_pred ccC
Q 019494 87 SAH 89 (340)
Q Consensus 87 s~~ 89 (340)
+..
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 114
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1.2e-06 Score=76.81 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC-----eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG-----LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g-----~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++|| |.+||.+|..-+|+.||..|-..+-..+-..+++ -.|||.|.+..+|..|+.+|||..++-....+|+|
T Consensus 35 RTLF--VSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 35 RTLF--VSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ceee--eccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 5666 8899999999999999999876666544322222 35999999999999999999999998765559999
Q ss_pred EeecCCCCc
Q 019494 211 SYSRHTDLS 219 (340)
Q Consensus 211 ~~ak~~~~~ 219 (340)
+++|.....
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999987654
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=6.8e-08 Score=84.27 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=98.2
Q ss_pred ccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 10 KYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 10 ~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
||+.+..+ +||.|.+||-+-|.|.+|.|.+ .+.| ||||+|.++-+..-|++.|||..++ +..++|
T Consensus 12 l~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~---------~~e~q~ 81 (267)
T KOG4454|consen 12 LLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE---------EDEEQR 81 (267)
T ss_pred HHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc---------cchhhc
Confidence 56766664 4889999999999999999876 2345 6999999999999999999998854 665555
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 164 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 164 (340)
.+-.-+ + -.-|+..+|++.++.+|+.-|.+
T Consensus 82 ~~r~G~--------------------------------------------s------hapld~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 82 TLRCGN--------------------------------------------S------HAPLDERVTEEILYEVFSQAGPI 111 (267)
T ss_pred ccccCC--------------------------------------------C------cchhhhhcchhhheeeecccCCC
Confidence 532111 0 01245678999999999999999
Q ss_pred eEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 165 QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 165 ~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.-+++.+.. +.+ +|+.+.-.-+.-.|+...++..+.-+
T Consensus 112 ~~~R~~~~~d~rnrn~-~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 112 EGVRIPTDNDGRNRNF-GFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCccccccccCCccCc-cchhhhhhhcCcHHhhhhcccCcCCC
Confidence 999886543 334 78877766666677776666655544
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.2e-06 Score=86.37 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=117.3
Q ss_pred cccccccCCCCCCC--HHHHHHhhccc-----------Cc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAF-----------GF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 70 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~f-----------G~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~ 70 (340)
+..-|+|+++++.+ |+..-.+|..- |+ |..+.+.. .+.+|||+|.+.++|..|+ .+++..
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~-~~~~~~--- 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAM-ALDGII--- 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhh-cccchh---
Confidence 44567888888865 67777777665 43 55555433 4457999999999999998 466654
Q ss_pred cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494 71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT 150 (340)
Q Consensus 71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt 150 (340)
+.|.++++.--........... ......+. ...+... ........++|++|+..++
T Consensus 247 ------f~g~~~~~~r~~d~~~~p~~~~----------~~~~~~~~------~~~~~~t--~~~~~~~ki~v~~lp~~l~ 302 (500)
T KOG0120|consen 247 ------FEGRPLKIRRPHDYQPVPGITL----------SPSQLGKV------GLLPAST--DVPDSPNKIFVGGLPLYLT 302 (500)
T ss_pred ------hCCCCceecccccccCCccchh----------hhcccccc------CCccccc--CcccccchhhhccCcCccC
Confidence 3566666542211100000000 00000000 0000000 0012223345899999999
Q ss_pred HHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCcc
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 220 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~~ 220 (340)
++++.++.+.||.+....++.. +.|+ ||.+|.|..-...|+..|||..+.++ .|.|..+-....+.
T Consensus 303 ~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~-af~ey~dpsvtd~A~agLnGm~lgd~---~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 303 EDQVKELLDSFGPLKAFRLVKDSATGNSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK---KLVVQRAIVGASNA 373 (500)
T ss_pred HHHHHHHHHhcccchhheeecccccccccce-eeeeeeCCcchhhhhcccchhhhcCc---eeEeehhhccchhc
Confidence 9999999999999888776543 2454 99999999999999999999999998 99998876655444
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.4e-07 Score=86.00 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=55.8
Q ss_pred CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494 17 SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 89 (340)
Q Consensus 17 ~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~ 89 (340)
|+.|||+-||++||+|.++.+++ +.+-.||||||.+.++.++|.-.|++..| .++.|.|.||+.
T Consensus 251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---------DDrRIHVDFSQS 318 (479)
T KOG0415|consen 251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---------DDRRIHVDFSQS 318 (479)
T ss_pred ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---------ccceEEeehhhh
Confidence 44589999999999999998887 23455799999999999999999999875 599999999984
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=8.8e-07 Score=76.85 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=55.3
Q ss_pred cCCCCCC--CHHHHHHhhccc-CceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 11 YLQWQLS--ASGERAHVFSAF-GFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 11 ~l~~~~~--~ee~L~~lF~~f-G~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
|+..++. .|.+|..+|.+| |.|.++++-+ +++++||||||.++|.|.-|-+.|||..+ .++-|.
T Consensus 53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---------~e~lL~ 123 (214)
T KOG4208|consen 53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---------MEHLLE 123 (214)
T ss_pred eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---------hhheee
Confidence 4444442 378999999999 7788887744 46889999999999999999999999875 477788
Q ss_pred Eeecc
Q 019494 84 ITYSA 88 (340)
Q Consensus 84 v~~s~ 88 (340)
|.+-.
T Consensus 124 c~vmp 128 (214)
T KOG4208|consen 124 CHVMP 128 (214)
T ss_pred eEEeC
Confidence 87744
No 119
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=2.3e-06 Score=83.22 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=59.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
|+|.|||.+++.++|+++|..||.|++..|..++ .+.+|||+|.+.+++..|+++ +-..|.++ +|.|+--+.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~---kl~Veek~~ 366 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGR---KLNVEEKRP 366 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCe---eEEEEeccc
Confidence 6699999999999999999999999999987644 114699999999999999987 45667776 888885443
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.35 E-value=2.4e-06 Score=63.91 Aligned_cols=69 Identities=22% Similarity=0.429 Sum_probs=46.7
Q ss_pred EEeecCCCCCCHH----HHHHHHcccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLD----VLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~----~L~~~F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|+|.|||.+.+.. .|++|+..+| +|..| ..+ .|+|.|.+.+.|.+|.+.|+|..++|. .|.|+|..
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~-tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~~~ 75 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGG-TAILRFPNQEFAERAQKRMEGEDVFGN---KISVSFSP 75 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT--EEEEESSHHHHHHHHHHHTT--SSSS-----EEESS-
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCC-EEEEEeCCHHHHHHHHHhhcccccccc---eEEEEEcC
Confidence 4488999888755 4778898988 55554 224 499999999999999999999999999 99999985
Q ss_pred CCC
Q 019494 215 HTD 217 (340)
Q Consensus 215 ~~~ 217 (340)
..+
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.33 E-value=2.4e-05 Score=72.84 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
.++.+.+||+||-+++|+++|.+....-| .|.++++|.. ++|| |+|...+..+..+.++.|-...|.|++
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ~-- 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQS-- 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCCC--
Confidence 46788899999999999999998887777 5667777753 2566 999999999999999999999999983
Q ss_pred EEEEEeecC
Q 019494 207 KLHISYSRH 215 (340)
Q Consensus 207 ~l~v~~ak~ 215 (340)
...+.|-|.
T Consensus 154 P~V~~~NK~ 162 (498)
T KOG4849|consen 154 PTVLSYNKT 162 (498)
T ss_pred Ceeeccchh
Confidence 556666553
No 122
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=2.2e-06 Score=84.03 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC--C--eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--G--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~--g--~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++.|+ |.+|...+-..+|++||++||+|+-.+++...+ | +|+||.+.+.++|.++|++|+.++|.|+ .|.|
T Consensus 405 gRNlW--VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mISV 479 (940)
T KOG4661|consen 405 GRNLW--VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MISV 479 (940)
T ss_pred cccee--eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eeee
Confidence 56688 779987888899999999999999888775432 2 4799999999999999999999999999 9999
Q ss_pred EeecCC
Q 019494 211 SYSRHT 216 (340)
Q Consensus 211 ~~ak~~ 216 (340)
.-+|..
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 988755
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=9.7e-08 Score=90.37 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=116.4
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
++.+|++|+... -+||+.+|..--. ...-.+++ + +||||.+.|..-|.+|++.++|+.- +-|+++.
T Consensus 1 mnklyignL~p~~~psdl~svfg~ak~~~~g~fl~k--~-gyafvd~pdq~wa~kaie~~sgk~e--------lqGkr~e 69 (584)
T KOG2193|consen 1 MNKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--S-GYAFVDCPDQQWANKAIETLSGKVE--------LQGKRQE 69 (584)
T ss_pred CCcccccccCCCCChHHHHHHhccccCCCCcceeee--c-ceeeccCCchhhhhhhHHhhchhhh--------hcCceee
Confidence 467888888743 6899999977621 12222332 3 4899999999999999999999874 6799999
Q ss_pred EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494 84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 163 (340)
Q Consensus 84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 163 (340)
+.++-.+... ++.+- +.|++...-++.|..|...||.
T Consensus 70 ~~~sv~kkqr-----------------------------------------srk~Q--irnippql~wevld~Ll~qyg~ 106 (584)
T KOG2193|consen 70 VEHSVPKKQR-----------------------------------------SRKIQ--IRNIPPQLQWEVLDSLLAQYGT 106 (584)
T ss_pred ccchhhHHHH-----------------------------------------hhhhh--HhcCCHHHHHHHHHHHHhccCC
Confidence 9887655321 22233 7899999999999999999999
Q ss_pred eeEEEEEc-CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 164 VQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 164 v~~v~i~~-~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
|+.+.... .......=|.|...+.+..|+.+|||..+.+. .+++.|--..
T Consensus 107 ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPde 157 (584)
T KOG2193|consen 107 VENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPDE 157 (584)
T ss_pred HhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCchh
Confidence 99987533 22211234679999999999999999999998 9999986543
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.23 E-value=3.9e-06 Score=75.89 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=64.9
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
..|+|.||++.|++++|++||..||.++++.+..+. .| +|-|.|...++|.+|++.+||..++|+ .|++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~G-ta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLG-TADVSFNRRDDAERAVKKYNGVALDGR---PMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCc-cceeeecchHhHHHHHHHhcCcccCCc---eeeeEEe
Confidence 445689999999999999999999999988875433 24 599999999999999999999999999 8888876
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 5544
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.21 E-value=4.1e-06 Score=72.75 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=62.6
Q ss_pred EEeecCCCCCCHHHHHHHHccc-CCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 140 ASIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~f-G~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+++..++.-+-+.++...|.+| |.|.++++-+. ++|+ |||+|++.+.|.-|-+.||++-++++ .|.|.|-
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgY-AFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vm 127 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGY-AFVEFESEEVAKIAAETMNNYLLMEH---LLECHVM 127 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCce-EEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEe
Confidence 4488999999999999999999 66676666432 2454 99999999999999999999999999 9999998
Q ss_pred cCC
Q 019494 214 RHT 216 (340)
Q Consensus 214 k~~ 216 (340)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 776
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.18 E-value=2.5e-06 Score=79.54 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=115.0
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.++..|++...-. +.++..++...|.+....+.. -..++++.|.|...+.+..|+.......+ .+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~---------~~ 157 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL---------DG 157 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc---------cc
Confidence 3455666665533 445778999999877665443 23566799999999999999975443342 34
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
+.+...+.+...+.......+ .........++ |.|++..+++|+|+..|.
T Consensus 158 ~~~~~dl~~~~~~~~~n~~~~----------------------------~~~~~s~~~~~--~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 158 NKGEKDLNTRRGLRPKNKLSR----------------------------LSSGPSDTIFF--VGELDFSLTRDDLKEHFV 207 (285)
T ss_pred ccccCcccccccccccchhcc----------------------------cccCcccccee--ecccccccchHHHhhhcc
Confidence 444444443322111100000 00011234444 789999999999999999
Q ss_pred ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
.+|.|..+++.... .|+ |+|+|.+..++..|+.. +...+++. ++++.+.+...
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~ 265 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKLALND-QTRSIGGR---PLRLEEDEPRP 265 (285)
T ss_pred CcCcceeeccCCCCCccchhhh-hhhhhhhchhHHHHhhc-ccCcccCc---ccccccCCCCc
Confidence 99999999986533 355 99999999999999988 88889988 89999876654
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.18 E-value=3.1e-06 Score=84.97 Aligned_cols=81 Identities=15% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-cC-----C-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DK-----N-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~~-----~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
|.++. +||.||...|+++.|...|.+||.|..|+|+ .. . ..-|+||-|.++.+|.+|++.|+|..+++.
T Consensus 172 P~TTN--lyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~-- 247 (877)
T KOG0151|consen 172 PQTTN--LYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY-- 247 (877)
T ss_pred Ccccc--eeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee--
Confidence 44444 5589999999999999999999999999975 21 1 123799999999999999999999999998
Q ss_pred cEEEEEeecCCCC
Q 019494 206 CKLHISYSRHTDL 218 (340)
Q Consensus 206 ~~l~v~~ak~~~~ 218 (340)
.|++.|+|.-.+
T Consensus 248 -e~K~gWgk~V~i 259 (877)
T KOG0151|consen 248 -EMKLGWGKAVPI 259 (877)
T ss_pred -eeeecccccccc
Confidence 999999986543
No 128
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.17 E-value=6.2e-06 Score=61.67 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=47.3
Q ss_pred ccccCCCCCCC------HHHHHHhhccc-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 8 SRKYLQWQLSA------SGERAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 8 ~~~~l~~~~~~------ee~L~~lF~~f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+-||+.|+|++ ..-|++|+..+ |+|.+|. ++-|.|.|.+.+.|.+|.+.|+|..++ |+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf---------G~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF---------GN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS---------SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc---------cc
Confidence 45788999986 45688999999 5788873 345999999999999999999999965 99
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|.|+|+...
T Consensus 68 kI~v~~~~~~ 77 (90)
T PF11608_consen 68 KISVSFSPKN 77 (90)
T ss_dssp --EEESS--S
T ss_pred eEEEEEcCCc
Confidence 9999998643
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=1.9e-06 Score=76.28 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=62.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
|+|++|++.+.+.+|..+|..||.|..|.+.. || +||+|+|..+|.-|+..||+..|.+. .+.|.|++..
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---gf-~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~ 73 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN---GF-GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK 73 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceeec---cc-ceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence 67999999999999999999999999887653 65 99999999999999999999999998 6888887643
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=5.2e-07 Score=92.11 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=108.1
Q ss_pred ccccccccCCCCCCC--HHHHHHhhcccCceeEEEEe----eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 4 IWPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~----~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
|+.+..+|++++... ++||+..|+.+|.+..+.+. ++.-++.|+|+|.+.++|.+||...++..+
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~--------- 734 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF--------- 734 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---------
Confidence 455667788887754 78999999999987666433 233456799999999999999965444321
Q ss_pred CCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHH
Q 019494 78 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 157 (340)
Q Consensus 78 ~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~ 157 (340)
| + ..|.|.|.+...|.++|+.+
T Consensus 735 -g--------K-------------------------------------------------~~v~i~g~pf~gt~e~~k~l 756 (881)
T KOG0128|consen 735 -G--------K-------------------------------------------------ISVAISGPPFQGTKEELKSL 756 (881)
T ss_pred -h--------h-------------------------------------------------hhhheeCCCCCCchHHHHhh
Confidence 1 1 11448899999999999999
Q ss_pred HcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 158 FSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 158 F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
|+.+|.++.+.+...+ .|. |+|.|.+..+|.+++...++..+... .+.|..+.+
T Consensus 757 ~~~~gn~~~~~~vt~r~gkpkg~-a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vsnp 814 (881)
T KOG0128|consen 757 ASKTGNVTSLRLVTVRAGKPKGK-ARVDYNTEADASRKVASVDVAGKREN---NGEVQVSNP 814 (881)
T ss_pred ccccCCccccchhhhhccccccc-eeccCCCcchhhhhcccchhhhhhhc---CccccccCC
Confidence 9999999998765322 454 99999999999999998888777666 677776665
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.10 E-value=7.8e-06 Score=76.88 Aligned_cols=180 Identities=15% Similarity=0.203 Sum_probs=104.1
Q ss_pred CCCCCCCHHHHHHhhc---cc-CceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 12 LQWQLSASGERAHVFS---AF-GFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 12 l~~~~~~ee~L~~lF~---~f-G~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
|++.+++ .|+.++|- .. |-+..|.++++ +..+-|||.|..+|+|+.|+..-.+. ++.+-|.+
T Consensus 169 LPfdat~-~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~----------iGqRYIEl 237 (508)
T KOG1365|consen 169 LPFDATA-LDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQN----------IGQRYIEL 237 (508)
T ss_pred CCCCcch-HHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHH----------HhHHHHHH
Confidence 4666664 88999994 44 35667777663 23345999999999999999754432 23333333
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCC---CCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL---EPESNVLLASIENMQYAVTLDVLHMVFSAF 161 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 161 (340)
-.|+..+...-- +|....+..+.-. .+......... .....++. +.+||++.+.|++.++|..|
T Consensus 238 FRSTaaEvqqvl----nr~~s~pLi~~~~-------sp~~p~~p~~~~p~~~~kdcvR--LRGLPy~AtvEdIL~FlgdF 304 (508)
T KOG1365|consen 238 FRSTAAEVQQVL----NREVSEPLIPGLT-------SPLLPGGPARLVPPTRSKDCVR--LRGLPYEATVEDILDFLGDF 304 (508)
T ss_pred HHHhHHHHHHHH----HhhccccccCCCC-------CCCCCCCccccCCCCCCCCeeE--ecCCChhhhHHHHHHHHHHH
Confidence 333321110000 0000001110000 00000000000 11234555 78999999999999999988
Q ss_pred CCeeE---EEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 162 GPVQK---IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 162 G~v~~---v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
-.-++ |.|.-.. .|. |||+|.+.|+|..|....+++....+ -|.|--+...+++
T Consensus 305 a~~i~f~gVHmv~N~qGrPSGe-AFIqm~nae~a~aaaqk~hk~~mk~R---YiEvfp~S~eeln 365 (508)
T KOG1365|consen 305 ATDIRFQGVHMVLNGQGRPSGE-AFIQMRNAERARAAAQKCHKKLMKSR---YIEVFPCSVEELN 365 (508)
T ss_pred hhhcccceeEEEEcCCCCcChh-hhhhhhhhHHHHHHHHHHHHhhcccc---eEEEeeccHHHHH
Confidence 74433 3443322 354 99999999999999999998876666 7777655444443
No 132
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.10 E-value=0.00019 Score=69.81 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=48.2
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.+|....|++..++.++.+.|+..=.+ .|.|--. ..| .|+|+|.+.++|..|+.. ++..+..+
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG-EAdveF~t~edav~Amsk-d~anm~hr 348 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG-EADVEFATGEDAVGAMGK-DGANMGHR 348 (510)
T ss_pred ceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC-cceeecccchhhHhhhcc-CCcccCcc
Confidence 666688999999999999999875443 5555322 234 499999999999999965 66666665
No 133
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.1e-05 Score=73.56 Aligned_cols=152 Identities=15% Similarity=0.176 Sum_probs=96.4
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---------ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
..+|++.++-+ |+.|...|..||.|.-=---| +.+.+|+|+.|+++.+...-+.+..-
T Consensus 260 ~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~----------- 328 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE----------- 328 (520)
T ss_pred cceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-----------
Confidence 44688888865 889999999999864211101 12234999999999999888776542
Q ss_pred CCCceEEEeeccC--Cc--ccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHH
Q 019494 77 MGPCTLRITYSAH--TD--LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD 152 (340)
Q Consensus 77 ~~~~~l~v~~s~~--~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~ 152 (340)
....+++..+.. ++ ..+. -|...+.+... ++.....+.+++| |+.|+-.++.+
T Consensus 329 -~~~~~yf~vss~~~k~k~VQIr-----PW~laDs~fv~---------------d~sq~lDprrTVF--VGgvprpl~A~ 385 (520)
T KOG0129|consen 329 -GEGNYYFKVSSPTIKDKEVQIR-----PWVLADSDFVL---------------DHNQPIDPRRTVF--VGGLPRPLTAE 385 (520)
T ss_pred -cccceEEEEecCcccccceeEE-----eeEeccchhhh---------------ccCcccCccceEE--ecCCCCcchHH
Confidence 233344433322 11 1111 01000000000 0011112466766 99999999999
Q ss_pred HHHHHHc-ccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHH
Q 019494 153 VLHMVFS-AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 153 ~L~~~F~-~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ 194 (340)
+|..+|+ .||.|+.+-|-.+ -+|- |=|.|.+..+=.+||.+
T Consensus 386 eLA~imd~lyGgV~yaGIDtD~k~KYPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 386 ELAMIMEDLFGGVLYVGIDTDPKLKYPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHhcCceEEEEeccCcccCCCCCc-ceeeecccHHHHHHHhh
Confidence 9999999 7999999988654 1465 88999999888888865
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.00 E-value=9.6e-06 Score=79.62 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=58.1
Q ss_pred ccCCCCCCC--HHHHHHhhcccCceeEEEEee--e--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 10 KYLQWQLSA--SGERAHVFSAFGFVHKITTFE--K--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~--~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
++++.+.++ -.||++||++||+|+-.+++. + ....|+||+|.+.++|.++|+.|+-.+ +.|+-|.
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE---------LHGrmIS 478 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE---------LHGRMIS 478 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh---------hcceeee
Confidence 356666644 689999999999998776655 2 246789999999999999999999888 4689999
Q ss_pred EeeccC
Q 019494 84 ITYSAH 89 (340)
Q Consensus 84 v~~s~~ 89 (340)
|+.++.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 987764
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.91 E-value=2.1e-05 Score=71.10 Aligned_cols=75 Identities=17% Similarity=0.388 Sum_probs=64.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.+.++ |+|++..+|.+++...|+.||.|.+|.|..++ +|+ +||+|.+.+.+..|++ |||..|.+. .+.
T Consensus 101 ~~sv~--v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~-~yvef~~~~~~~~ay~-l~gs~i~~~---~i~ 173 (231)
T KOG4209|consen 101 APSVW--VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGF-AYVEFSSYELVEEAYK-LDGSEIPGP---AIE 173 (231)
T ss_pred CceEE--EeccccccccchhhheeeccCCccceeeeccccCCCccee-EEEecccHhhhHHHhh-cCCcccccc---cce
Confidence 44444 89999999999999999999999988775432 456 9999999999999999 999999999 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|++-+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9986654
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=71.88 Aligned_cols=143 Identities=18% Similarity=0.282 Sum_probs=95.0
Q ss_pred HHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCc
Q 019494 23 AHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 99 (340)
Q Consensus 23 ~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~ 99 (340)
...|+.+=...+..+.+ ......+|+.|.+...-.++-.+-+++.| +..++++.-.+.
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---------~~~~VR~a~gts---------- 177 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKI---------GKPPVRLAAGTS---------- 177 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccc---------cCcceeeccccc----------
Confidence 56677776555554443 22334599999888777777766666664 233343332111
Q ss_pred CCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----C
Q 019494 100 RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----G 174 (340)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~ 174 (340)
|..|.+.. | +.....|+.+.|..+|++|.|...|.+|-...+.++.+++ .
T Consensus 178 ----wedPsl~e--------------w-------~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk 232 (290)
T KOG0226|consen 178 ----WEDPSLAE--------------W-------DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK 232 (290)
T ss_pred ----cCCccccc--------------C-------ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccc
Confidence 11111100 0 0111224478888899999999999999998888876543 4
Q ss_pred CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 175 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 175 g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
|+ +||.|.|.+++..|+..|||..+..+ .|++.-+
T Consensus 233 gy-gfVSf~~pad~~rAmrem~gkyVgsr---piklRkS 267 (290)
T KOG0226|consen 233 GY-GFVSFRDPADYVRAMREMNGKYVGSR---PIKLRKS 267 (290)
T ss_pred cc-eeeeecCHHHHHHHHHhhcccccccc---hhHhhhh
Confidence 65 99999999999999999999999988 6666543
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.91 E-value=3.1e-05 Score=72.11 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=63.6
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
-.|||.|||..||.+++.++|++||.|.+ |++.+.+ +|. |+|.|--+++..-|++.|++..+.|.
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg~-- 211 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRGK-- 211 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccCc--
Confidence 34789999999999999999999998864 5566544 356 99999999999999999999999988
Q ss_pred cEEEEEeec
Q 019494 206 CKLHISYSR 214 (340)
Q Consensus 206 ~~l~v~~ak 214 (340)
.|+|+-|+
T Consensus 212 -~~rVerAk 219 (382)
T KOG1548|consen 212 -KLRVERAK 219 (382)
T ss_pred -EEEEehhh
Confidence 99999775
No 138
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.89 E-value=3.3e-05 Score=61.27 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=38.2
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 198 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~ 198 (340)
|.|.++...++.++|+++|+.||.|..|.+..... .|+|.|.+.++|++|++.+.-.
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 33778999999999999999999999988877554 7999999999999999988765
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.83 E-value=2.7e-05 Score=75.91 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=58.7
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...||+.+++.+ +++|+++|..||.|.+..|..+ +...||||+|.+.++++.|+++- .+. ++++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~-------ig~~ 357 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLE-------IGGR 357 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccc-------cCCe
Confidence 344899898865 7889999999999999877653 23378999999999999999764 443 7899
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
+|.|+..+.
T Consensus 358 kl~Veek~~ 366 (419)
T KOG0116|consen 358 KLNVEEKRP 366 (419)
T ss_pred eEEEEeccc
Confidence 999986553
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.78 E-value=6.5e-05 Score=68.06 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=60.5
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+++|.|++.+ ++||++||+.||++..+.+-- +.+.+.|-|.|...++|.+|++.+||.. +.|+.+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~---------ldG~~m 154 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA---------LDGRPM 154 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc---------cCCcee
Confidence 45888888865 799999999999888886644 3345679999999999999999999955 679999
Q ss_pred EEeeccC
Q 019494 83 RITYSAH 89 (340)
Q Consensus 83 ~v~~s~~ 89 (340)
++.....
T Consensus 155 k~~~i~~ 161 (243)
T KOG0533|consen 155 KIEIISS 161 (243)
T ss_pred eeEEecC
Confidence 9887553
No 141
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.72 E-value=3.9e-05 Score=72.12 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=53.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
+..|+ |++|.+.+|+|.|++.|++||+|.+++++++ ++|| +||+|++.++..+++.. ..+.|+++
T Consensus 6 ~~Klf--iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgF-gfv~f~~~~~v~~vl~~-~~h~~dgr 75 (311)
T KOG4205|consen 6 SGKLF--IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGF-GFVTFATPEGVDAVLNA-RTHKLDGR 75 (311)
T ss_pred Cccee--ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccc-cceecCCCcchheeecc-cccccCCc
Confidence 45566 9999999999999999999999999998763 4677 99999999888888754 33445555
No 142
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.64 E-value=0.00011 Score=68.21 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=60.5
Q ss_pred EEEeecCCCCCCHHH----H--HHHHcccCCeeEEEEEcCC------CC-eEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 139 LASIENMQYAVTLDV----L--HMVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~----L--~~~F~~fG~v~~v~i~~~~------~g-~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
+|||-.++..|-.|+ | .+.|.+||+|.+|++-++. .+ .-.||.|.+.|+|++|+...+|..++|+
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr-- 193 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR-- 193 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc--
Confidence 477888888887666 2 4789999999999986543 11 1249999999999999999999999999
Q ss_pred cEEEEEeec
Q 019494 206 CKLHISYSR 214 (340)
Q Consensus 206 ~~l~v~~ak 214 (340)
.|+.+|..
T Consensus 194 -~lkatYGT 201 (480)
T COG5175 194 -VLKATYGT 201 (480)
T ss_pred -eEeeecCc
Confidence 99999985
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.58 E-value=8.4e-05 Score=74.92 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=62.5
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEee-------ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~-------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
..+|++|+... |+.|...|.+||.|..|+++- .....++||.|.+..+|++|+.+|+|+.+ -
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---------~ 245 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---------M 245 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---------e
Confidence 46899999854 899999999999999998874 23456799999999999999999999985 4
Q ss_pred CceEEEeeccC
Q 019494 79 PCTLRITYSAH 89 (340)
Q Consensus 79 ~~~l~v~~s~~ 89 (340)
...+++.|++.
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 88889998864
No 144
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00014 Score=50.19 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHH
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 192 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~ 192 (340)
|.|.+.+.... +.+...|..||+|+++.+..+.. ..+|+|.++.+|++|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 44777764544 45666899999999988875443 6999999999999995
No 145
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.55 E-value=0.00022 Score=55.96 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=49.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEE-------------EEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-------------i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
|+|.+.|.. ....+.+.|++||+|++.. ++... . --.|.|+++.+|.+||.. ||..|.|. +
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-N-Wi~I~Y~~~~~A~rAL~~-NG~i~~g~--~ 82 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-N-WIHITYDNPLSAQRALQK-NGTIFSGS--L 82 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-T-EEEEEESSHHHHHHHHTT-TTEEETTC--E
T ss_pred EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-C-EEEEECCCHHHHHHHHHh-CCeEEcCc--E
Confidence 557788766 4567888899999999875 33333 2 589999999999999975 99998876 4
Q ss_pred EEEEEeecCC
Q 019494 207 KLHISYSRHT 216 (340)
Q Consensus 207 ~l~v~~ak~~ 216 (340)
.+-|.+.+..
T Consensus 83 mvGV~~~~~~ 92 (100)
T PF05172_consen 83 MVGVKPCDPA 92 (100)
T ss_dssp EEEEEE-HHH
T ss_pred EEEEEEcHHh
Confidence 5667777543
No 146
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=0.00022 Score=64.08 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCC
Q 019494 53 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 132 (340)
Q Consensus 53 ~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (340)
..-|..|..+|++.. .+++.|+|.|+.+..
T Consensus 4 rt~ae~ak~eLd~~~---------~~~~~lr~rfa~~a~----------------------------------------- 33 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRF---------PKGRSLRVRFAMHAE----------------------------------------- 33 (275)
T ss_pred ccHHHHHHHhcCCCC---------CCCCceEEEeeccce-----------------------------------------
Confidence 345788888999986 579999999987631
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC---CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~---g~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
|+|.||...++.|.|++.|+.||.|.+-++.-+.+ +-.++|+|...-.|.+|+..++---+.+
T Consensus 34 -------l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 34 -------LYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred -------EEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 55889999999999999999999999866543221 1258999999999999999886443433
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.51 E-value=4.7e-05 Score=68.20 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=56.3
Q ss_pred cccc---CCCCCCCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 8 SRKY---LQWQLSASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 8 ~~~~---l~~~~~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.||| |+|+.+| +.|-..|.+|=.-...++++ .++++|+||.|.|.+++.+|+.+|||+. ++.+
T Consensus 191 fRIfcgdlgNevnd-~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky---------Vgsr 260 (290)
T KOG0226|consen 191 FRIFCGDLGNEVND-DVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY---------VGSR 260 (290)
T ss_pred ceeecccccccccH-HHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc---------cccc
Confidence 3555 4666665 78999999997665555554 3578899999999999999999999998 4788
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
+|++..|.-
T Consensus 261 piklRkS~w 269 (290)
T KOG0226|consen 261 PIKLRKSEW 269 (290)
T ss_pred hhHhhhhhH
Confidence 888776553
No 148
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.39 E-value=0.00014 Score=69.45 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=56.1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCC-----------eEEEEEcCChHHHHHHHHHh
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGG-----------LQALIQYPDVQTAVVAKEAL 195 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g-----------~~afV~F~~~~~A~~A~~~l 195 (340)
-++++|+ +.||+.+-.-|-|.+||+.+|.|..|+|..- .++ .||||+|+..+.|.+|.+.|
T Consensus 229 l~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3688888 7899999999999999999999999998531 111 27999999999999999999
Q ss_pred cCCeeCCC
Q 019494 196 EGHCIYDG 203 (340)
Q Consensus 196 ng~~i~~~ 203 (340)
|...-+-.
T Consensus 307 ~~e~~wr~ 314 (484)
T KOG1855|consen 307 NPEQNWRM 314 (484)
T ss_pred chhhhhhh
Confidence 76554443
No 149
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.38 E-value=0.00026 Score=64.63 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=52.4
Q ss_pred HHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
|+++++-|++||+|.+|+|+.- ...---||+|...++|.+|+-.|||+. ++|+.++..|.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy---------FGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY---------FGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce---------ecceeeeheeccHH
Confidence 7788999999999999998861 111128999999999999999999998 47999988886643
No 150
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.31 E-value=0.0046 Score=58.63 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=86.3
Q ss_pred cCCCCCCCHHHHHHhhcccCcee--EEEEe--eecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 11 YLQWQLSASGERAHVFSAFGFVH--KITTF--EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG~V~--~v~~~--~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
=|+|.++| .++..+|.---.+. .+.+. .+.+.+.|.|.|.|.|.-+.|++.-... +.++.|.|-.
T Consensus 67 glpwq~Sd-~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh----------~g~ryievYk 135 (508)
T KOG1365|consen 67 GLPWQSSD-QDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHH----------MGTRYIEVYK 135 (508)
T ss_pred CCCCCccc-CCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhh----------ccCCceeeec
Confidence 36888887 78888876442211 11222 2333346999999999999998743322 3566666554
Q ss_pred ccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc----C
Q 019494 87 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF----G 162 (340)
Q Consensus 87 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f----G 162 (340)
+...+. ++.+...+.. -....+...-+.|-..+||+++++.++.++|... |
T Consensus 136 a~ge~f-~~iagg~s~e------------------------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~ 190 (508)
T KOG1365|consen 136 ATGEEF-LKIAGGTSNE------------------------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTG 190 (508)
T ss_pred cCchhh-eEecCCcccc------------------------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccC
Confidence 443321 1111100000 0000011122344578999999999999999632 2
Q ss_pred CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHH
Q 019494 163 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 163 ~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~ 194 (340)
.++.|.++++ -.|. |||.|..+++|+.|+.+
T Consensus 191 g~egvLFV~rpdgrpTGd-AFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 191 GTEGVLFVTRPDGRPTGD-AFVLFACEEDAQFALRK 225 (508)
T ss_pred CccceEEEECCCCCcccc-eEEEecCHHHHHHHHHH
Confidence 4455554443 1366 99999999999999865
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.20 E-value=0.00054 Score=47.34 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHH
Q 019494 16 LSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 60 (340)
Q Consensus 16 ~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai 60 (340)
+...++++..|..||+|.++.+-. .....+|+|.+..+|++|+
T Consensus 11 ~~~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 11 PDLAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred chHHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 334567888999999999998763 3457999999999999985
No 152
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.19 E-value=0.00075 Score=61.71 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=52.6
Q ss_pred HHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
++++.+.+++||+|.+|.||... .-...||+|+..++|.+|+-.|||..+.|+ .++.+|-....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr---~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR---VVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---eeeheeccHHh
Confidence 45677889999999999987532 122489999999999999999999999998 88888865443
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.07 E-value=0.0012 Score=52.41 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=31.9
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 66 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~ 66 (340)
-++|+++|+.||.|.-|.+.++.. -|+|.|.+.++|++|+..+.-.
T Consensus 15 re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 689999999999999998876432 4999999999999999977654
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.05 E-value=0.0056 Score=47.74 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=55.0
Q ss_pred eecCCCCCCHHHHHHHHcc--cCCeeEEEEEc-----CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC-CccEEEEEee
Q 019494 142 IENMQYAVTLDVLHMVFSA--FGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-GFCKLHISYS 213 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~~-----~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~~~~l~v~~a 213 (340)
+.|+|...|.++|.+++.. .|...-+.++- .+.| +|||.|.+.+.|.+-.+.++|..+... +.....|+||
T Consensus 6 irNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~G-YAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 6 IRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLG-YAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYA 84 (97)
T ss_pred EecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceE-EEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehh
Confidence 8899999999999998865 34444344321 2346 499999999999999999999988532 1236678888
Q ss_pred cCC
Q 019494 214 RHT 216 (340)
Q Consensus 214 k~~ 216 (340)
+-.
T Consensus 85 riQ 87 (97)
T PF04059_consen 85 RIQ 87 (97)
T ss_pred Hhh
Confidence 654
No 155
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.00 E-value=0.0009 Score=66.51 Aligned_cols=88 Identities=25% Similarity=0.280 Sum_probs=71.1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
..++||+ |.||--..|.-+|+.|..+ .|.|+...|-+-+. .|||.|.+.++|.+...+|||...-..+...|.+.
T Consensus 442 ~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEe--eecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 4578888 8899999999999999994 66666654543333 59999999999999999999998876667799999
Q ss_pred eecCCCCccccCC
Q 019494 212 YSRHTDLSIKVNN 224 (340)
Q Consensus 212 ~ak~~~~~~~~~~ 224 (340)
|.....+...++.
T Consensus 518 f~~~deld~hr~~ 530 (718)
T KOG2416|consen 518 FVRADELDKHRNG 530 (718)
T ss_pred ecchhHHHHHhcc
Confidence 9988877655443
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.00 E-value=0.00037 Score=62.67 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=50.1
Q ss_pred HHHHHhhc-ccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494 20 GERAHVFS-AFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 91 (340)
Q Consensus 20 e~L~~lF~-~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~ 91 (340)
|||...|+ +||+|.++.+.+ ...|+ ++|.|...|+|++|+++|||.- +.|++|...++..++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GN-VYV~f~~Ee~ae~a~~~lnnRw---------~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGN-VYVKFRSEEDAEAALEDLNNRW---------YNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhh-hhhhcccHHHHHHHHHHHcCcc---------ccCCcceeeecCcCc
Confidence 45555566 999999996655 23444 9999999999999999999998 479999999987654
No 157
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.93 E-value=0.00051 Score=61.75 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=55.9
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----------CC------eEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----------GG------LQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----------~g------~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
.||++|+|+.+....|++||+.||.|-+|.+-+.+ +| ..|+|+|.+...|....+.|||..|.|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 35589999999999999999999999999874311 11 158999999999999999999999999
Q ss_pred C
Q 019494 203 G 203 (340)
Q Consensus 203 ~ 203 (340)
+
T Consensus 156 k 156 (278)
T KOG3152|consen 156 K 156 (278)
T ss_pred C
Confidence 7
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0012 Score=65.24 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 20 GERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
.-|..+|+++|+|+++.+.- +..+|+.|+||.+..+|+.|++.|||+.+. +..++.|..
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--------knHtf~v~~ 140 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--------KNHTFFVRL 140 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--------ccceEEeeh
Confidence 34678999999999987753 457789999999999999999999999974 677777753
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0017 Score=60.55 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=47.8
Q ss_pred HHhhcccCceeEEEEeeec-----CCce--EEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494 23 AHVFSAFGFVHKITTFEKT-----AGFQ--ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 89 (340)
Q Consensus 23 ~~lF~~fG~V~~v~~~~~~-----~~~~--AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~ 89 (340)
.++|.+||+|.+|++.++. .... .||+|.+.|+|.+||.+.+|.. +.|+-|+..|...
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~---------~DGr~lkatYGTT 202 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL---------LDGRVLKATYGTT 202 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc---------ccCceEeeecCch
Confidence 4799999999999998742 1111 5999999999999999999987 4699999988653
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.79 E-value=0.0069 Score=50.50 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=53.5
Q ss_pred CCCcEEEEEeec--CCC-CCCHH----HHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 133 PESNVLLASIEN--MQY-AVTLD----VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 133 ~~s~vl~v~v~n--l~~-~vt~~----~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
|+..++.|++.+ .+. +.-.| +|.+.|..||+|+=|++... .-+|.|.+-++|.+|+. ++|.+|.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~-- 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR-- 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE--
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE--
Confidence 456677777766 111 22233 67788999999998887753 48999999999999985 799999998
Q ss_pred cEEEEEeecCC
Q 019494 206 CKLHISYSRHT 216 (340)
Q Consensus 206 ~~l~v~~ak~~ 216 (340)
.|+|++..+.
T Consensus 98 -~l~i~LKtpd 107 (146)
T PF08952_consen 98 -TLKIRLKTPD 107 (146)
T ss_dssp -EEEEEE----
T ss_pred -EEEEEeCCcc
Confidence 9999975544
No 161
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.70 E-value=0.0051 Score=50.78 Aligned_cols=70 Identities=21% Similarity=0.369 Sum_probs=53.6
Q ss_pred ccccccCCCCCCC---HHHHHH---hhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA---SGERAH---VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~---ee~L~~---lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
|||-|-+.|+... .|||++ -.+.||+|.+|...- +-.|.|.|+|..+|-+|+.++.... .|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~----------pg 151 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRA----------PG 151 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCC----------CC
Confidence 6777777785532 356554 578899999998763 2349999999999999999999754 58
Q ss_pred ceEEEeecc
Q 019494 80 CTLRITYSA 88 (340)
Q Consensus 80 ~~l~v~~s~ 88 (340)
.-++++|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 888888743
No 162
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.68 E-value=0.0025 Score=57.69 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred ccCCCCC---CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 10 KYLQWQL---SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 10 ~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+|+++.. +. +++...|+.||.|..|.+.. +..+++|||+|.+.+.+.+|+. |||..| .++.+
T Consensus 104 v~v~nvd~~~t~-~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---------~~~~i 172 (231)
T KOG4209|consen 104 VWVGNVDFLVTL-TKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---------PGPAI 172 (231)
T ss_pred EEEecccccccc-chhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---------ccccc
Confidence 4554443 44 45999999999998776554 3467789999999999999998 999985 58888
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
.|.+.+-.
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 88876543
No 163
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.013 Score=60.30 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.5
Q ss_pred CCCCCC
Q 019494 274 MMHQPT 279 (340)
Q Consensus 274 ~~~~p~ 279 (340)
.++.|.
T Consensus 547 pPPlpg 552 (1102)
T KOG1924|consen 547 PPPLPG 552 (1102)
T ss_pred CCCCCC
Confidence 334444
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.67 E-value=0.00098 Score=59.94 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=51.9
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----------ecCCce------EEEEeCCHHHHHHHHHHhcCCCC
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----------KTAGFQ------ALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----------~~~~~~------AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
++-+||++||.. -.-|++||+.||+|-+|-+-+ +.++++ ++|||.+...|.+..+.|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 467899999965 678999999999999998865 112222 99999999999999999999997
No 165
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.62 E-value=0.0019 Score=60.83 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=64.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE--------EEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA--------MFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIY 201 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~--------i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~ 201 (340)
+....|+|.+|+..+++++|.+.|.++|.|.+=+ |.+. .+|. |.|.|+|..+|+.|++.+++..+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGe-atvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGE-ATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCc-eeeeecChhhhhhhhhhhcccccc
Confidence 4445566889999999999999999999886432 2221 1354 999999999999999999999999
Q ss_pred CCCccEEEEEeecCCC
Q 019494 202 DGGFCKLHISYSRHTD 217 (340)
Q Consensus 202 ~~~~~~l~v~~ak~~~ 217 (340)
+. +|+|.+++...
T Consensus 143 gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN---TIKVSLAERRT 155 (351)
T ss_pred CC---Cchhhhhhhcc
Confidence 98 99999887655
No 166
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.0054 Score=56.46 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=50.9
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.-+|+|.+.+ .-....|.++|++||+|++++.. .+.. .-+|.|.++.+|.+||.. ||..|.+.
T Consensus 197 D~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~-~ngN-wMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP-SNGN-WMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred cceEEEeccC-ccchhHHHHHHHhhCeeeeeecC-CCCc-eEEEEecchhHHHHhhhh-cCeeeccc
Confidence 4578888886 44556788999999999998776 4434 489999999999999975 89888775
No 167
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.57 E-value=0.0053 Score=62.22 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=56.0
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-C----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
||. +.|++.+|+.||+-++|+-|-.+-.-.+.+. . .|. |.|-|++.++|..|...|++..|.++ +|+|.
T Consensus 869 V~~--~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe-~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l~ 942 (944)
T KOG4307|consen 869 VLS--CNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGE-CMVAFESQEEARRASMDLDGQKIRNR---VVSLR 942 (944)
T ss_pred EEE--ecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccc-eeEeecCHHHHHhhhhccccCcccce---eEEEE
Confidence 666 8899999999999999999975533222221 1 354 99999999999999999999999998 77665
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.53 E-value=0.0015 Score=58.81 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=49.1
Q ss_pred HHHHHHHc-ccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 152 DVLHMVFS-AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 152 ~~L~~~F~-~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|+|+..|+ +||+|+++++=... .| .++|+|...++|++|++.|||..+.|+ +|.+.|+--++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcCc
Confidence 44555556 99999998653211 24 399999999999999999999999999 99999886543
No 169
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.43 E-value=0.002 Score=61.21 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=101.9
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~--------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
+.-|.+-|+... .+.++.||.-.|+|.++.++.. ... .|||.|.|...+..|- .|.+..+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sR-tcyVkf~d~~sv~vaQ-hLtntvf-------- 76 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISR-TCYVKFLDSQSVTVAQ-HLTNTVF-------- 76 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceee-eEEEeccCCcceeHHh-hhcccee--------
Confidence 334555566543 6789999999999999988861 123 4999999999999887 4666653
Q ss_pred CCCceEEEe-eccCCcccc--cccCcCCcCC----CCC--CCCCC-CC-ccCcC-CC----ccc--cCCCCCCCCCCcEE
Q 019494 77 MGPCTLRIT-YSAHTDLSV--KFQSHRSRDY----TNP--YLPVA-PS-AIDAS-GQ----LSV--GLDGKKLEPESNVL 138 (340)
Q Consensus 77 ~~~~~l~v~-~s~~~~l~~--~~~~~~~~~~----~~~--~~~~~-~~-~~~~~-~~----~~~--~~~~~~~~~~s~vl 138 (340)
-++.|.|- |.... +.. .++....-.. -.+ .|+.. .. ...+. .+ +.+ ..+....+.-..++
T Consensus 77 -vdraliv~p~~~~~-~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~ 154 (479)
T KOG4676|consen 77 -VDRALIVRPYGDEV-IPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTR 154 (479)
T ss_pred -eeeeEEEEecCCCC-CccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhh
Confidence 25555443 32211 000 0000000000 000 00000 00 00000 00 000 00111111113444
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
. |.+|...+..+++-++|..+|+|....+-.+....+|-|+|....+...|+.. +|..+
T Consensus 155 ~--v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~ 213 (479)
T KOG4676|consen 155 E--VQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRER 213 (479)
T ss_pred h--hhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhh
Confidence 4 88999999999999999999999887765554444678999999999999875 55443
No 170
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.40 E-value=0.02 Score=44.68 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=49.8
Q ss_pred cCCCCCCCHHHHHHhhccc--CceeEEEE----eeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 11 YLQWQLSASGERAHVFSAF--GFVHKITT----FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~f--G~V~~v~~----~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
.||+.-+. ++|.+++... |...=+-+ ..+.+.|||||.|.+.++|.+-.+.++|+... .....|...|
T Consensus 8 NIPn~~t~-~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~-----~~~s~Kvc~i 81 (97)
T PF04059_consen 8 NIPNKYTQ-EMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP-----NFNSKKVCEI 81 (97)
T ss_pred cCCCCCCH-HHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc-----cCCCCcEEEE
Confidence 45555554 6777666554 44322211 12457789999999999999999999998842 2234667788
Q ss_pred eeccCC
Q 019494 85 TYSAHT 90 (340)
Q Consensus 85 ~~s~~~ 90 (340)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888743
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.40 E-value=0.016 Score=47.96 Aligned_cols=75 Identities=23% Similarity=0.398 Sum_probs=52.2
Q ss_pred CCCCcEEEEEe--ecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 132 EPESNVLLASI--ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 132 ~~~s~vl~v~v--~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++-.++.|.= .|+...-+...+..-.+.||.|.+|.+..+. .|.|.|.|..+|.+|+.+.+. ..-|. .++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgt---m~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGT---MFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCc---eEE
Confidence 44545555221 3454333333455567889999999877554 599999999999999999887 44555 788
Q ss_pred EEee
Q 019494 210 ISYS 213 (340)
Q Consensus 210 v~~a 213 (340)
++|.
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 8874
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.37 E-value=0.0097 Score=51.97 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=48.7
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCCccEEEEEeecCCCC
Q 019494 149 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 149 vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~~~~l~v~~ak~~~~ 218 (340)
-..+.|+++|..|+.+.....+++=+ ...|.|.+.++|.+|+..|+ ++.+.+. .|+|-|+.....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence 35688999999999999998887665 59999999999999999999 9999998 999999965544
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0059 Score=60.58 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=54.6
Q ss_pred CcEEEEEeecCCCCCCHH-------HHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLD-------VLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~-------~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.++++ |.|.| -|..+ .|..+|+++|+|+++.++.. ..|+ .|++|++..+|..|++.|||+.|+-+
T Consensus 58 D~vVv--v~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~-lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVV--VDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGY-LFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEE--ECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeE-EEEEecChhhHHHHHHhcccceeccc
Confidence 34555 77886 34333 35678999999999988632 2354 99999999999999999999999876
Q ss_pred CccEEEEEe
Q 019494 204 GFCKLHISY 212 (340)
Q Consensus 204 ~~~~l~v~~ 212 (340)
+++.|..
T Consensus 134 --Htf~v~~ 140 (698)
T KOG2314|consen 134 --HTFFVRL 140 (698)
T ss_pred --ceEEeeh
Confidence 4666653
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.36 E-value=0.0091 Score=49.76 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=44.8
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
++|.+.|+.||+|.=|++.. ..-+|+|.+-++|.+|+ .|+|..| .|+.|+|+.....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaal-s~dg~~v---------~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAAL-SLDGIQV---------NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHH-HGCCSEE---------TTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHH-ccCCcEE---------CCEEEEEEeCCcc
Confidence 47888999999988887764 24999999999999999 6999985 7999999976544
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.15 E-value=0.11 Score=49.03 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=43.6
Q ss_pred ccCCCCC---CCHHHHHHhhcccC--ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 10 KYLQWQL---SASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 10 ~~l~~~~---~~ee~L~~lF~~fG--~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
+||+|+. +| +||.+....-| .|.++++++ +.+|+||+|...+..+.++-++.|--++|
T Consensus 83 ~YvGNL~W~TTD-~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 83 CYVGNLLWYTTD-ADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred EEecceeEEecc-HHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 3666554 55 67777666666 467777776 35788999999999999999988877775
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.00 E-value=0.0052 Score=59.08 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHHHhhcccCceeEEEEeee----------c-------CCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494 20 GERAHVFSAFGFVHKITTFEK----------T-------AGFQALVQFSDTETASSAKNALDGRSIP 69 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~----------~-------~~~~AFVeF~~~e~A~~Ai~~lng~~i~ 69 (340)
|.|.+||+.+|.|..|+|.+- . .+-+|||||...+.|.+|.+.|+...-|
T Consensus 246 enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~w 312 (484)
T KOG1855|consen 246 ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNW 312 (484)
T ss_pred HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhh
Confidence 789999999999999999761 1 1334999999999999999999876666
No 177
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.81 E-value=0.28 Score=50.25 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=53.5
Q ss_pred eecCCCCCCHHHHHHHHcccCCee-EEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 142 IENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~fG~v~-~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+.||+.....-|++.+|+---.-. -|.|+-..-|. |||-|.+-|+|.-|+.+ ++..|.+. .+++-+|...
T Consensus 7 LqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~Ge-aFI~FsTDeDARlaM~k-dr~~i~g~---~VrLlLSSks 77 (944)
T KOG4307|consen 7 LQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGE-AFIGFSTDEDARLAMTK-DRLMIHGA---EVRLLLSSKS 77 (944)
T ss_pred ecCCcccccchHHHHhhcccccCCCceEEecccccc-eEEEecccchhhhhhhh-cccceecc---eEEEEeccHH
Confidence 679999999999999998642111 13455555565 99999999999999976 66678887 8888887544
No 178
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.60 E-value=0.019 Score=50.17 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=46.1
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc--CCCCCccCCCCCCCCceEEEeeccCCcc
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSAHTDL 92 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~~~~~~~~l~v~~s~~~~l 92 (340)
.+.|+++|+.|+.+..+..+++-+ -..|.|.+.++|.+|+..|+ +..+ .|..++|.|++....
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~---------~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSF---------NGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEE---------TTEE-EEE----SS-
T ss_pred HHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhccccccc---------CCCceEEEEcccccc
Confidence 578999999999999998887432 39999999999999999999 7764 688899999865433
No 179
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.55 E-value=0.00074 Score=69.69 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcc--
Q 019494 19 SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDL-- 92 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l-- 92 (340)
.+.++..|..+|.|.+|.+-++ ....++++++....+|+.|... .+.. +.++.+.+..+.....
T Consensus 586 ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~---------~a~~~~av~~ad~~~~~~ 655 (881)
T KOG0128|consen 586 KEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGA---------LANRSAAVGLADAEEKEE 655 (881)
T ss_pred HHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccc---------cCCccccCCCCCchhhhh
Confidence 3466889999999999988762 2333688999999999988853 3333 3566666665553321
Q ss_pred cccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE--
Q 019494 93 SVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-- 170 (340)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-- 170 (340)
..+...+..| .... ++|.||+..+.+++|+..|+.+|.+..|.+.
T Consensus 656 ~~kvs~n~~R-------------------------------~~~~--~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h 702 (881)
T KOG0128|consen 656 NFKVSPNEIR-------------------------------DLIK--IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH 702 (881)
T ss_pred ccCcCchHHH-------------------------------HHHH--HHHhhcchhhcCchhhhhcCccchhhhHHHHHH
Confidence 1000000000 0122 3488999999999999999999987766543
Q ss_pred --cC-CCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494 171 --DK-NGGLQALIQYPDVQTAVVAKEALEGH 198 (340)
Q Consensus 171 --~~-~~g~~afV~F~~~~~A~~A~~~lng~ 198 (340)
++ -+|. |+|+|.+.++|.+|+....+.
T Consensus 703 ~n~~~~rG~-~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 703 KNEKRFRGK-AYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred hhccccccc-eeeEeecCCchhhhhhhhhhh
Confidence 11 2564 999999999999999876554
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.51 E-value=0.016 Score=55.15 Aligned_cols=72 Identities=17% Similarity=0.359 Sum_probs=53.8
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC-------CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~-------g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
||. |.|+....|.|+++.||..-|+|..+.++..-+ ...|||.|.|..++..|-...| +.+-+. ..|.
T Consensus 9 vIq--vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdr--aliv 83 (479)
T KOG4676|consen 9 VIQ--VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDR--ALIV 83 (479)
T ss_pred eee--ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeee--eEEE
Confidence 666 889999999999999999999999999875211 1269999999999999865544 444443 1444
Q ss_pred EEee
Q 019494 210 ISYS 213 (340)
Q Consensus 210 v~~a 213 (340)
+-|.
T Consensus 84 ~p~~ 87 (479)
T KOG4676|consen 84 RPYG 87 (479)
T ss_pred EecC
Confidence 4444
No 181
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.46 E-value=0.0096 Score=61.67 Aligned_cols=62 Identities=29% Similarity=0.367 Sum_probs=55.2
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 89 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~ 89 (340)
..-|..||+.||+|.+++.++. -..|.|+|.+.|.|..|+++|+|+++. ..|-+.+|.|++.
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs-------~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVS-------VTGAPSRVSFAKT 373 (1007)
T ss_pred HHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCccc-------ccCCceeEEeccc
Confidence 5789999999999999998874 346999999999999999999999986 6788899999873
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.21 E-value=0.044 Score=41.23 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 65 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng 65 (340)
..||.+||+.||.|.---+.. ..|||...+.+.|..|++.++-
T Consensus 22 ~~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 589999999999987666533 2499999999999999998874
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.20 E-value=0.084 Score=37.54 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=40.8
Q ss_pred EeecCCCCCCHHHHHHHHccc---CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh
Q 019494 141 SIENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 195 (340)
Q Consensus 141 ~v~nl~~~vt~~~L~~~F~~f---G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l 195 (340)
.|.++ .+++.++++..|..| ....+|.-..+. .|=|.|.|.+.|.+|+.+|
T Consensus 9 hirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 9 HIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 37787 478999999999999 235677756555 4999999999999999875
No 184
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.19 E-value=0.013 Score=60.61 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=60.7
Q ss_pred eecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 142 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+.|..-+.+-..|..+|+.||.|.....++.-. .|.|+|.+.++|..|+++|+|.++.-- .-+.+|.|||.-.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLP 375 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEeccccc
Confidence 455556777888999999999999999887655 699999999999999999999987532 1289999998654
No 185
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.96 E-value=0.06 Score=42.22 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHhhcccCceeEEEEe-e----------ecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 14 WQLSASGERAHVFSAFGFVHKITTF-E----------KTAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 14 ~~~~~ee~L~~lF~~fG~V~~v~~~-~----------~~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
+-+.....+.+.|++||+|.+..-. + -..++.--|+|.+..+|.+||. -||+.|
T Consensus 14 fp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 14 FPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp --GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred cCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 3334457788999999999888500 0 1255679999999999999995 588875
No 186
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.38 E-value=0.04 Score=53.09 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=56.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC-eeCCCCccEEEEEeecCCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH-CIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~-~i~~~~~~~l~v~~ak~~~ 217 (340)
+|++||.+.++.++|+.+|...-.-..-.++-+. | ++||.+.|..-|.+|++.++|. ++.|+ ++.+.++-++.
T Consensus 4 lyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-g-yafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~kk 77 (584)
T KOG2193|consen 4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-G-YAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVPKK 77 (584)
T ss_pred ccccccCCCCChHHHHHHhccccCCCCcceeeec-c-eeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhhHH
Confidence 5589999999999999999875211111233344 4 6999999999999999999998 57787 99999886554
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=0.12 Score=47.88 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 14 WQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 14 ~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
+-+.+-.-|.++|++||+|++++.- .++++-.|.|.+..+|++||. .||+.|
T Consensus 205 Fppg~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii 256 (350)
T KOG4285|consen 205 FPPGQVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTII 256 (350)
T ss_pred cCccchhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeee
Confidence 3344445677899999999999865 467889999999999999996 588765
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.12 E-value=0.21 Score=39.86 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=44.2
Q ss_pred cCCCCCCCHHHHHHhhcccC-ceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494 11 YLQWQLSASGERAHVFSAFG-FVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIP 69 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG-~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~ 69 (340)
.++.-.+.-++|..+.+.+= .|..+++++. .+...+++.|++.++|+.-.+.+||+.+-
T Consensus 19 ~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 19 AVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33333344578888888884 4667777773 35556999999999999999999999863
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.88 E-value=0.23 Score=37.40 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=40.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 197 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng 197 (340)
..|++|+ .|.+.-..||.++|+.||.|. |.-..+. .|||-..+++.|..|+..+..
T Consensus 9 dHVFhlt---FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT---FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE-----TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe---CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 3556633 677888999999999999976 3333332 599999999999999999874
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.62 E-value=0.037 Score=51.95 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=50.7
Q ss_pred CCCHHHHH--HhhcccCceeEEEEeeec-----CCc--eEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEee
Q 019494 16 LSASGERA--HVFSAFGFVHKITTFEKT-----AGF--QALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 16 ~~~ee~L~--~lF~~fG~V~~v~~~~~~-----~~~--~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
..+|+.|+ +.|.+||.|.+|++.++. .++ -++|+|...|+|..||...+|.. ..++.|+..|
T Consensus 89 ~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~---------~dg~~lka~~ 159 (327)
T KOG2068|consen 89 LADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV---------DDGRALKASL 159 (327)
T ss_pred ccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH---------hhhhhhHHhh
Confidence 35677776 589999999999887732 111 29999999999999999999987 3577777777
Q ss_pred ccCC
Q 019494 87 SAHT 90 (340)
Q Consensus 87 s~~~ 90 (340)
...+
T Consensus 160 gttk 163 (327)
T KOG2068|consen 160 GTTK 163 (327)
T ss_pred CCCc
Confidence 5543
No 191
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.59 E-value=0.32 Score=35.11 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=46.9
Q ss_pred ccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494 8 SRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP 69 (340)
Q Consensus 8 ~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~ 69 (340)
+..|++...++-+|++..+..|+- .+|+.- ..| =||.|.|.++|+++.+..+|+.++
T Consensus 3 ~~~~vp~~~~~v~d~K~~Lr~y~~-~~I~~d--~tG--fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 3 SHKFVPVHGVTVEDFKKRLRKYRW-DRIRDD--RTG--FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CcccCCCCCccHHHHHHHHhcCCc-ceEEec--CCE--EEEEECChHHHHHHHHhcCCCEEE
Confidence 456888888888999999999976 555543 245 699999999999999999998764
No 192
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.47 E-value=0.11 Score=54.55 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=59.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
++.|++++.+... .+-|...|..||.|.+|.+-+ ...||+|.|.+...|+.|++.|-|..|. ...+.++
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G-------~P~~r~r 524 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLG-------GPPRRLR 524 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCC-------CCCcccc
Confidence 4567777655543 567889999999999998765 3457999999999999999999999875 3557789
Q ss_pred Eeecc
Q 019494 84 ITYSA 88 (340)
Q Consensus 84 v~~s~ 88 (340)
|.|+.
T Consensus 525 vdla~ 529 (975)
T KOG0112|consen 525 VDLAS 529 (975)
T ss_pred ccccc
Confidence 98876
No 193
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.46 E-value=0.049 Score=50.95 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=54.7
Q ss_pred CCCCC--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 12 LQWQL--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 12 l~~~~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
+++.. .++++|+..|..+|.|++|++.. ...+++|+|+|.+...+..|+.. +... +.++++.+.
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~ 259 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS---------IGGRPLRLE 259 (285)
T ss_pred ecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc---------ccCcccccc
Confidence 44444 34789999999999999998876 23566799999999999999986 6665 468889998
Q ss_pred eccCC
Q 019494 86 YSAHT 90 (340)
Q Consensus 86 ~s~~~ 90 (340)
+....
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 87643
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.05 E-value=0.037 Score=51.92 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=55.5
Q ss_pred EEEeecCCCCCC-HHHHH--HHHcccCCeeEEEEEcCC------C-CeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 139 LASIENMQYAVT-LDVLH--MVFSAFGPVQKIAMFDKN------G-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 139 ~v~v~nl~~~vt-~~~L~--~~F~~fG~v~~v~i~~~~------~-g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+|+|-.|+..+- ++.|+ +.|.+||.|.+|.+.++. . +..++|.|+..|+|..||...+|....++ .|
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~l 155 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---AL 155 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hh
Confidence 355556655554 33444 579999999999987643 1 12489999999999999999999999998 77
Q ss_pred EEEeecC
Q 019494 209 HISYSRH 215 (340)
Q Consensus 209 ~v~~ak~ 215 (340)
+.+|...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7777643
No 195
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.04 E-value=0.051 Score=54.48 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=59.1
Q ss_pred cccccCCCCCC--CHHHHHHhhc-ccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFS-AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~-~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+.-|||.++.. ++..|+.|.. ..|.|.+..|.+-+ ..|||.|.+.++|...+.+|||..-. ..+.+-|.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP------~sNPK~L~ 515 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWP------PSNPKHLI 515 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccC------CCCCceeE
Confidence 34457777763 5899999998 45677777554422 24999999999999999999997632 35678899
Q ss_pred EeeccCCccc
Q 019494 84 ITYSAHTDLS 93 (340)
Q Consensus 84 v~~s~~~~l~ 93 (340)
+.|....++.
T Consensus 516 adf~~~deld 525 (718)
T KOG2416|consen 516 ADFVRADELD 525 (718)
T ss_pred eeecchhHHH
Confidence 9998766554
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.16 E-value=0.64 Score=46.54 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=49.2
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcc--cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 197 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~--fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng 197 (340)
+..+...|.+.-++++..+|+++.||+. +-+++.|.+-..+ .-||.|++.++|++|.+.|.-
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHH
Confidence 3344444557899999999999999965 7788888776544 389999999999999887763
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.03 E-value=0.41 Score=41.54 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=50.2
Q ss_pred EEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEc----CC---CC--eEEEEEcCChHHHHHHHHHhcCCeeCCC-C-cc
Q 019494 139 LASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFD----KN---GG--LQALIQYPDVQTAVVAKEALEGHCIYDG-G-FC 206 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~----~~---~g--~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~ 206 (340)
.|.|.+||+++|++++.+.++. ++.......+. .. .. ..|+|.|.+.++...-.+.++|+.+.+. | ..
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~ 88 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEY 88 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EE
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCc
Confidence 3458999999999999998887 77662222211 11 00 1499999999999999999999876543 2 34
Q ss_pred EEEEEeecCCC
Q 019494 207 KLHISYSRHTD 217 (340)
Q Consensus 207 ~l~v~~ak~~~ 217 (340)
...|.||--..
T Consensus 89 ~~~VE~Apyqk 99 (176)
T PF03467_consen 89 PAVVEFAPYQK 99 (176)
T ss_dssp EEEEEE-SS--
T ss_pred ceeEEEcchhc
Confidence 66788875543
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.39 E-value=0.69 Score=33.34 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 148 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 148 ~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.++.++++..+.+|+- .+| ...+.| =||.|.|.++|.++....+|..++.-
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRTG--FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCCE--EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 6789999999999974 333 334445 38999999999999999999988775
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.13 E-value=1.3 Score=32.56 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred EEEEEeecCCCCCCHHHHHHHHcccCC-----eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 137 VLLASIENMQYAVTLDVLHMVFSAFGP-----VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 137 vl~v~v~nl~~~vt~~~L~~~F~~fG~-----v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
.|+|.++.. ..++..+|..++..-+. |-+|.|..+ ++||+-... .|..+++.|++..+.|+ .|+|+
T Consensus 2 rl~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk---~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGK---KVRVE 72 (74)
T ss_dssp EEEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EE
T ss_pred EEEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCe---eEEEE
Confidence 356555554 58888888888887754 445556543 599987654 89999999999999999 88887
Q ss_pred ee
Q 019494 212 YS 213 (340)
Q Consensus 212 ~a 213 (340)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 200
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=90.98 E-value=0.26 Score=46.73 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=54.3
Q ss_pred cccCCCCC--CCHHHHHHhhcccCceeE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494 9 RKYLQWQL--SASGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 74 (340)
Q Consensus 9 ~~~l~~~~--~~ee~L~~lF~~fG~V~~--------v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~ 74 (340)
-+|+-.++ +++.+|.++|.++|.|.. |.+.+ ...|+-|.|.|.|.-.|+.||+-++++.+
T Consensus 68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf------ 141 (351)
T KOG1995|consen 68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF------ 141 (351)
T ss_pred cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc------
Confidence 44554444 347889999999998842 22222 23455699999999999999999999995
Q ss_pred CCCCCceEEEeeccCC
Q 019494 75 ENMGPCTLRITYSAHT 90 (340)
Q Consensus 75 ~~~~~~~l~v~~s~~~ 90 (340)
.+.+|+|.++..+
T Consensus 142 ---~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 ---CGNTIKVSLAERR 154 (351)
T ss_pred ---cCCCchhhhhhhc
Confidence 5689999887644
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.56 E-value=2.3 Score=33.98 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=47.4
Q ss_pred eecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 142 IENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
+...++-++.++|..+.+.+- .|..++|.++.. .+.++++|.|.++|.+=.+..||..+..
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 567777888888887777765 455667776542 3569999999999999999999997643
No 202
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=89.51 E-value=5.6 Score=35.88 Aligned_cols=7 Identities=43% Similarity=0.766 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 019494 297 GNHPYMP 303 (340)
Q Consensus 297 ~~~~~~p 303 (340)
.++-|||
T Consensus 170 ~pgv~mp 176 (341)
T KOG2893|consen 170 APGVYMP 176 (341)
T ss_pred CCccccC
Confidence 3333443
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.65 E-value=2.2 Score=43.10 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=59.7
Q ss_pred CCcEEEEEeecCCC-CCCHHHHHHHHccc----CCeeEEEEEcC--------------C---------------------
Q 019494 134 ESNVLLASIENMQY-AVTLDVLHMVFSAF----GPVQKIAMFDK--------------N--------------------- 173 (340)
Q Consensus 134 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~f----G~v~~v~i~~~--------------~--------------------- 173 (340)
.++.|. |-||++ .|..++|..+|+.| |.|.+|.|.+. .
T Consensus 173 ~T~RLA--VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 173 ETKRLA--VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccceee--EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 466677 668875 78999999998775 59999998421 0
Q ss_pred ----------------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 174 ----------------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 174 ----------------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+=++|.|+|.+.+.|.+..+.++|..+... +..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeec
Confidence 014799999999999999999999999877 456666663
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.52 E-value=1.8 Score=33.09 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=17.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHH
Q 019494 135 SNVLLASIENMQYAVTLDVLHMV 157 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~ 157 (340)
.++++ |.|++...++|+|++.
T Consensus 52 ~rtVl--vsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 52 KRTVL--VSGIPDVLDEEELRDK 72 (88)
T ss_pred CCEEE--EeCCCCCCChhhheee
Confidence 45566 7899999999999984
No 205
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=87.68 E-value=1.1 Score=44.64 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=43.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CC--eEEEEEcCChHHHHHHHHHhcC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GG--LQALIQYPDVQTAVVAKEALEG 197 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g--~~afV~F~~~~~A~~A~~~lng 197 (340)
++.+| |+.|+..+||++|...|..||.+.- .=..+. .| -|+|+-|+++.+...-+.++.-
T Consensus 259 S~KVF--vGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 259 SRKVF--VGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred cccee--ecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34444 9999999999999999999998642 211110 23 1599999999888877776553
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.17 E-value=1.1 Score=43.83 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=47.7
Q ss_pred cccCCCCCCCHHHHHHhhccc-CceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494 9 RKYLQWQLSASGERAHVFSAF-GFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIP 69 (340)
Q Consensus 9 ~~~l~~~~~~ee~L~~lF~~f-G~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~ 69 (340)
.+.+|.-.+- .||..++..| -.|.+|++++. .+.+.++|.|++.++|....+++||+.|-
T Consensus 79 ilaVP~~mt~-~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 79 ILAVPAYMTS-HDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred EEeccccccH-HHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3566766664 6777777777 56899999883 24556999999999999999999999874
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.92 E-value=0.54 Score=46.20 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 150 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 150 t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|.++|...|.+||+|..|.+-.... .|.|.|.+..+|-+|-. ..+..|.++ .|+|.|-++..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCc---eeEEEEecCCc
Confidence 6788999999999999998755433 59999999999977753 588999999 99999987754
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.46 E-value=0.59 Score=45.93 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 17 SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 17 ~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
.+.++|..-|.+||+|.+|.+--. .- -|.|+|.+..+|-+|.. ..+.. ++++.|+|-|-+..
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~-~~-~a~vTF~t~aeag~a~~-s~~av---------lnnr~iKl~whnps 446 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYS-SL-HAVVTFKTRAEAGEAYA-SHGAV---------LNNRFIKLFWHNPS 446 (526)
T ss_pred chHhhhhhhhhhcCccccccccCc-hh-hheeeeeccccccchhc-cccce---------ecCceeEEEEecCC
Confidence 346899999999999999976432 12 39999999999977763 46665 57999999987754
No 209
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=84.92 E-value=2 Score=30.58 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=35.2
Q ss_pred ccCCCCC-CCHHHHHHhhccc----CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh
Q 019494 10 KYLQWQL-SASGERAHVFSAF----GFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 63 (340)
Q Consensus 10 ~~l~~~~-~~ee~L~~lF~~f----G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l 63 (340)
++|.... .+.+||+.+|..| + ..+|.-+.. . -|=|.|.|.+.|.+|+..|
T Consensus 8 vhirGvd~lsT~dI~~y~~~y~~~~~-~~~IEWIdD--t-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRGVDELSTDDIKAYFSEYFDEEG-PFRIEWIDD--T-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcccCC-CceEEEecC--C-cEEEEECCHHHHHHHHHcC
Confidence 4554433 1248999999999 4 345644432 2 2999999999999999764
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.51 E-value=4.7 Score=39.65 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=54.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC--CeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~--g~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
+..|+ |.-+|..+|..||..+...|= .|..++|+++.. .+..+|.|.+.++|..-.+.+||..+..
T Consensus 74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 66777 778999999999988876654 677888887542 3679999999999999999999997643
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=79.82 E-value=4.8 Score=37.44 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=56.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----------CCeEEEEEcCChHHHHHH----HHHhc--C
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----------GGLQALIQYPDVQTAVVA----KEALE--G 197 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----------~g~~afV~F~~~~~A~~A----~~~ln--g 197 (340)
++-|+ +.|+..+++...+-..|.+||.|+.|.++.+. ......+-|-+++.+..- ++.|. .
T Consensus 15 TRSLL--feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLL--FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHH--HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 34455 78999999999999999999999999998654 112588999998877543 33333 2
Q ss_pred CeeCCCCccEEEEEeecCC
Q 019494 198 HCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 198 ~~i~~~~~~~l~v~~ak~~ 216 (340)
+.+... .|+|+|..-+
T Consensus 93 ~~L~S~---~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVSLN 108 (309)
T ss_pred HhcCCc---ceeEEEEEEe
Confidence 346666 8999987643
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.09 E-value=3.7 Score=30.03 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHhhcccCc-----eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494 19 SGERAHVFSAFGF-----VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 87 (340)
Q Consensus 19 ee~L~~lF~~fG~-----V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s 87 (340)
..+|..++..-+. |-+|.+.. .|+||+-. .+.|.++++.|++..+ +|++++|+.+
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~-~~~a~~v~~~l~~~~~---------~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVP-EEVAEKVLEALNGKKI---------KGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE--TT-HHHHHHHHTT--S---------SS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEEC-HHHHHHHHHHhcCCCC---------CCeeEEEEEC
Confidence 5666666666643 45676654 36999955 5589999999999884 6999998753
No 213
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.05 E-value=1.6 Score=39.82 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=44.0
Q ss_pred ccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCC
Q 019494 8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRS 67 (340)
Q Consensus 8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~ 67 (340)
..||+.|+.. ..|.|++-|+.||+|...+++- ....+-++|+|...-.|.+|++.++-.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCc
Confidence 4567766662 3578999999999998765543 2223349999999999999999885433
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.77 E-value=8 Score=39.23 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=48.8
Q ss_pred ccCCCCCCCHHHHHHhhccc----CceeEEEEee--------------ec------------------------------
Q 019494 10 KYLQWQLSASGERAHVFSAF----GFVHKITTFE--------------KT------------------------------ 41 (340)
Q Consensus 10 ~~l~~~~~~ee~L~~lF~~f----G~V~~v~~~~--------------~~------------------------------ 41 (340)
+++-|....-+||.-+|+.| |.|.+|.|.+ +.
T Consensus 180 vNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~~~~kLR 259 (650)
T KOG2318|consen 180 VNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDVDREKLR 259 (650)
T ss_pred eccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhHHHHHHH
Confidence 37888888888999998888 6899998864 00
Q ss_pred -------CCceEEEEeCCHHHHHHHHHHhcCCCCC
Q 019494 42 -------AGFQALVQFSDTETASSAKNALDGRSIP 69 (340)
Q Consensus 42 -------~~~~AFVeF~~~e~A~~Ai~~lng~~i~ 69 (340)
.-.||-|+|.++++|....+.++|..+-
T Consensus 260 ~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 260 QYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred HHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 1235999999999999999999999864
No 215
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.80 E-value=4.9 Score=40.50 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=39.0
Q ss_pred ccCCCCCCC--HHHHHHhhcc--cCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494 10 KYLQWQLSA--SGERAHVFSA--FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 65 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~--fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng 65 (340)
+-|+.|+.+ +|+++.||.. +=++.+|.+-.. + + =||+|.+.+||++|.++|.-
T Consensus 178 vilREIpettp~e~Vk~lf~~encPk~iscefa~N-~-n-WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGENCPKVISCEFAHN-D-N-WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred EEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-C-c-eEEEeecchhHHHHHHHHHH
Confidence 345555533 8999999976 567778876542 2 2 79999999999999886653
No 216
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.99 E-value=21 Score=35.40 Aligned_cols=13 Identities=46% Similarity=0.956 Sum_probs=8.5
Q ss_pred HHHHHHcccCCee
Q 019494 153 VLHMVFSAFGPVQ 165 (340)
Q Consensus 153 ~L~~~F~~fG~v~ 165 (340)
.|=.||+-||.|.
T Consensus 246 ~lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 246 ALGQIFEIFGPVK 258 (483)
T ss_pred cchhhhhhhcccC
Confidence 3556777777664
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.69 E-value=0.81 Score=42.05 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=46.0
Q ss_pred CCHHHHHHHHcccCCeeEEEEEc----------CCC-----C--------eEEEEEcCChHHHHHHHHHhcCCeeCCCC-
Q 019494 149 VTLDVLHMVFSAFGPVQKIAMFD----------KNG-----G--------LQALIQYPDVQTAVVAKEALEGHCIYDGG- 204 (340)
Q Consensus 149 vt~~~L~~~F~~fG~v~~v~i~~----------~~~-----g--------~~afV~F~~~~~A~~A~~~lng~~i~~~~- 204 (340)
-+++.|+..|+.||.|..|.|+- +.. | |.|||+|....--..|+.+|.|..+.-++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 47899999999999999887641 111 1 24678888877788888888887653221
Q ss_pred ----ccEEEEEeecC
Q 019494 205 ----FCKLHISYSRH 215 (340)
Q Consensus 205 ----~~~l~v~~ak~ 215 (340)
...++|+|.+.
T Consensus 253 ~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRS 267 (445)
T ss_pred Ccccccccccccchh
Confidence 12566666543
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=69.20 E-value=3.3 Score=42.51 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=53.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
..+.| |+|+.+.++.+-+..+...+|.|..++... | ||.+|.+..-+..|+..|+-..+.++
T Consensus 40 ~~~vf--v~~~~~~~s~~~~~~il~~~g~v~s~kr~~----f-gf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 40 RDTVF--VGNISYLVSQEFWKSILAKSGFVPSWKRDK----F-GFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CceeE--ecchhhhhhHHHHHHHHhhCCcchhhhhhh----h-cccchhhHHHHHHHHHHhcccCCCcc
Confidence 44444 889999999999999999999988776543 4 99999999999999999999888887
No 219
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=66.41 E-value=1.3e+02 Score=28.95 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=41.4
Q ss_pred CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC-CCCCceEEEeeccCCcccc
Q 019494 18 ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE-NMGPCTLRITYSAHTDLSV 94 (340)
Q Consensus 18 ~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~-~~~~~~l~v~~s~~~~l~~ 94 (340)
.|..|...|-.-+.|.=|..+..+.-|++|.+|.+.-- .--++-+|.+.-+. ..-|+.++|.|-+..+|.+
T Consensus 100 NE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG------~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpF 171 (441)
T KOG1902|consen 100 NEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIG------HGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPF 171 (441)
T ss_pred cHHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhc------cCCCCccccccCCcccccCceeeEeEEeeccccc
Confidence 38889999999888876666666666778888776532 11222222110000 1235667777766555543
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.65 E-value=9.8 Score=31.42 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=29.2
Q ss_pred EEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcC
Q 019494 137 VLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDK 172 (340)
Q Consensus 137 vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~ 172 (340)
-+.|.+.|||.. .+++.|+.+-+..|++.++..-..
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 456778899865 688999999999999999875543
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.41 E-value=2 Score=39.54 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=34.0
Q ss_pred HHHHHHhhcccCceeEEEEee----------ecCC----ce---------EEEEeCCHHHHHHHHHHhcCCCC
Q 019494 19 SGERAHVFSAFGFVHKITTFE----------KTAG----FQ---------ALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~----------~~~~----~~---------AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
|+.|+..|+.||+|..|.+.- +.+| +| |||+|..-.--..|+..|.|..+
T Consensus 175 e~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 175 EDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 688999999999998886531 1111 11 66777666666667777777653
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.45 E-value=40 Score=25.46 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred cCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCC-eEEEEEcCChHHHHHHHHH
Q 019494 144 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 144 nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g-~~afV~F~~~~~A~~A~~~ 194 (340)
..+...+..++++.++. || +|.+|.......+ --|||.+.+-.+|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 44567888888888877 66 7888875543323 1599999988888776543
No 223
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.23 E-value=1.4e+02 Score=29.74 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=4.9
Q ss_pred EEEcCChH
Q 019494 179 LIQYPDVQ 186 (340)
Q Consensus 179 fV~F~~~~ 186 (340)
.++|.|-|
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 46777643
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=57.12 E-value=41 Score=27.01 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.7
Q ss_pred HHHHHhhcccCceeEEEEee
Q 019494 20 GERAHVFSAFGFVHKITTFE 39 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~ 39 (340)
..|.+.|+.=|+|.+|....
T Consensus 16 nKLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVT 35 (145)
T ss_pred chhhHHhcCCCceEEEEEEe
Confidence 68999999999999998765
No 225
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=43 Score=32.77 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.3
Q ss_pred eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 176 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 176 ~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++|.|+++|.+.+......++|.+.... -..+.+.|.
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfv 295 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFV 295 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccc-cceeeeeec
Confidence 3689999999999999999999987765 335556654
No 226
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.42 E-value=60 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred eecCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChHHHHHHHH
Q 019494 142 IENMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 193 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~A~~ 193 (340)
++..+...|..++++.++. || +|.+|.......+. -|||.+..-++|...-.
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3455668899999988877 66 78888754332221 59999988777776543
No 227
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=52.25 E-value=71 Score=28.98 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=3.0
Q ss_pred CCCCCC
Q 019494 290 SQSMPM 295 (340)
Q Consensus 290 ~~~~p~ 295 (340)
..|||+
T Consensus 172 gv~mp~ 177 (341)
T KOG2893|consen 172 GVYMPP 177 (341)
T ss_pred ccccCC
Confidence 345555
No 228
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=51.95 E-value=5.4 Score=28.75 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=29.9
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 64 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln 64 (340)
++|.+.|..+....+++-+ .||..|.|.++|..+++.+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 5777778877776666433 29999999999999887654
No 229
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.61 E-value=20 Score=33.77 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCC
Q 019494 46 ALVQFSDTETASSAKNALDGRS 67 (340)
Q Consensus 46 AFVeF~~~e~A~~Ai~~lng~~ 67 (340)
|||+|.+.++|..|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999766543
No 230
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=46.94 E-value=93 Score=23.64 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=33.7
Q ss_pred HHHHHHHHcccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC
Q 019494 151 LDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 197 (340)
Q Consensus 151 ~~~L~~~F~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng 197 (340)
.+.++++++..| +++.+......--+...+++.|.+.|.++...+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 455777888877 67766654433335689999999999988877664
No 231
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=46.16 E-value=98 Score=21.44 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcCCC-CeEEEEEcCChHHHHHHHHHhcCCe
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG-GLQALIQYPDVQTAVVAKEALEGHC 199 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~~~-g~~afV~F~~~~~A~~A~~~lng~~ 199 (340)
+.|.+.|- .-...++-++|.+.| .|..+.++.... +. --+.+++.+.|.++++. +|+.
T Consensus 4 i~v~v~d~--pG~La~v~~~l~~~~inI~~i~~~~~~~~~~-~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 4 LSVFLENK--PGRLAAVTEILSEAGINIRALSIADTSEFGI-LRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred EEEEEcCC--CChHHHHHHHHHHCCCCEEEEEEEecCCCCE-EEEEECCHHHHHHHHHH-CCCE
Confidence 34334443 456677888888887 788887665432 22 33445666666666654 4443
No 232
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.35 E-value=24 Score=30.69 Aligned_cols=59 Identities=10% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 154 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 154 L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
..++|..|-+..-..+++..| ..-|.|.+.+.|..|...++.+.+.+++ .+++-|+...
T Consensus 32 ~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~~--~~k~yfaQ~~ 90 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGKN--ELKLYFAQPG 90 (193)
T ss_pred HHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCCc--eEEEEEccCC
Confidence 445566544433333444433 3788999999999999999999999872 5666665543
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.32 E-value=20 Score=31.06 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=43.2
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc-eEEEeeccCC
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHT 90 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~-~l~v~~s~~~ 90 (340)
.+.++||.+|-+..-..+++ +.+.--|.|.+.+.|..|...+++..+ .++ .++.-|++..
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f---------~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSF---------NGKNELKLYFAQPG 90 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhccc---------CCCceEEEEEccCC
Confidence 34567888666655444444 233488999999999999999999985 355 7788777643
No 234
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=41.23 E-value=90 Score=22.53 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=32.6
Q ss_pred CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494 18 ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 64 (340)
Q Consensus 18 ~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln 64 (340)
+-++|++..+.+| +.-..+.-...|...|+-+.+.+.|+++.+.+.
T Consensus 35 ~i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 35 EIDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3567888889999 444443321226778888889999999988764
No 235
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=40.21 E-value=95 Score=22.40 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 196 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln 196 (340)
.+++.+....+| +.-.++-....|-+.|+-+++.+.+.++.+.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356777888999 555556554334468898989999999888774
No 236
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=39.64 E-value=11 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc
Q 019494 152 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 196 (340)
Q Consensus 152 ~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln 196 (340)
+++.+.|..+....++.-+ .+|..|+|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6788888776555543211 49999999999998887654
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=55 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=41.5
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChHHHHHHHHH
Q 019494 136 NVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ 194 (340)
.||- |.+.+...-.++|..+|+.|++ =.+|+-+.+. .||-.|.+...|..|+..
T Consensus 392 HVlE--Iydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLE--IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeE--eccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 5666 6688888888889999999984 2444444443 599999999999999864
No 238
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=38.48 E-value=1.6e+02 Score=29.87 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=6.2
Q ss_pred EEEEEcCCh
Q 019494 177 QALIQYPDV 185 (340)
Q Consensus 177 ~afV~F~~~ 185 (340)
.|.+++.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 478887753
No 239
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=38.10 E-value=1.7e+02 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=24.4
Q ss_pred CHHHHHHhhccc------CceeEEEEeeecCCceEEEEeCCHHHH
Q 019494 18 ASGERAHVFSAF------GFVHKITTFEKTAGFQALVQFSDTETA 56 (340)
Q Consensus 18 ~ee~L~~lF~~f------G~V~~v~~~~~~~~~~AFVeF~~~e~A 56 (340)
+++++.++++.| |.|..-++.+-... .+||.+.....|
T Consensus 14 ~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~~-g~~Vdig~k~~g 57 (318)
T PRK07400 14 THEDFAALLDKYDYHFKPGDIVNGTVFSLEPR-GALIDIGAKTAA 57 (318)
T ss_pred CHHHHHHHHHhhHhhcCCCCEEEEEEEEEECC-EEEEEECCCeEE
Confidence 366777777654 88887777663333 388888654333
No 240
>KOG0877 consensus 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
Probab=37.98 E-value=22 Score=31.38 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=36.0
Q ss_pred cccccccccCCCCCCCHHHHHHhhcccC---ceeEEEEee------ecCCceEEEEeCC
Q 019494 3 YIWPLSRKYLQWQLSASGERAHVFSAFG---FVHKITTFE------KTAGFQALVQFSD 52 (340)
Q Consensus 3 ~~~~~~~~~l~~~~~~ee~L~~lF~~fG---~V~~v~~~~------~~~~~~AFVeF~~ 52 (340)
.|+.+.++|+...+..|.++.++|---+ +|.+|.... ...++-|||.-.|
T Consensus 23 ki~sleeiyl~slpike~eiid~~lg~slkdeVLkImpVqKqtrAGQrtRfKAfVaigD 81 (213)
T KOG0877|consen 23 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 81 (213)
T ss_pred hhhhhhhhhccCccccchhhhhhhhccchHhhhheeeecccccccccccceEEEEEEee
Confidence 5899999999999999999999998554 455554332 1234558887554
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.36 E-value=46 Score=31.01 Aligned_cols=46 Identities=7% Similarity=0.180 Sum_probs=32.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEE-EcCCCCeEEEEEcCChHH
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQALIQYPDVQT 187 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i-~~~~~g~~afV~F~~~~~ 187 (340)
|++.||+.++-..+|+....+-|-+- ..| .....|. ||++|.++..
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k-~flh~~~~~~ 379 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGK-CFLHFGNRKG 379 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcc-eeEecCCccC
Confidence 55889999999999999888776432 222 3334454 9999998643
No 242
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=34.03 E-value=1.5e+02 Score=22.44 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHhhccc-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494 19 SGERAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 65 (340)
Q Consensus 19 ee~L~~lF~~f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng 65 (340)
++.++++++.+ |+|.++-...+.--+...+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 67788999999 578888666554445699999999999988765553
No 243
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=32.60 E-value=28 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=10.1
Q ss_pred CCHHHHHHhhcccCc
Q 019494 17 SASGERAHVFSAFGF 31 (340)
Q Consensus 17 ~~ee~L~~lF~~fG~ 31 (340)
++|++|+++|.+.++
T Consensus 21 td~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 21 TDEDQLKEVFNRIKK 35 (36)
T ss_dssp --HHHHHHHHHCS--
T ss_pred CCHHHHHHHHHHhcc
Confidence 568999999988754
No 244
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.40 E-value=1.7e+02 Score=20.21 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=28.7
Q ss_pred cCCCCCCCHHHHHHhhcccC-ceeEEEEeeecCCceEEEEeC----CHHHHHHHHH
Q 019494 11 YLQWQLSASGERAHVFSAFG-FVHKITTFEKTAGFQALVQFS----DTETASSAKN 61 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG-~V~~v~~~~~~~~~~AFVeF~----~~e~A~~Ai~ 61 (340)
.++..+-.-.+|.++|+..| .|.++........+.+.|.|. +.+++.++++
T Consensus 7 ~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 7 RVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred EECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 34555544567888899996 477776544322334544444 4444444443
No 245
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=32.03 E-value=2.6e+02 Score=22.80 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 149 VTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 149 vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
.+.+.+++....-|- ++++ ...++ ...|.|+|.++..+|.+.|...-=.+- .|.+.++
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi--~~~~~--~~~irf~~~~~Ql~Ak~vL~~~L~~~y---~VAlnl~ 108 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSI--TPEND--SLLIRFDSPEQSAAAKEVLDRTLPHGY---IIAQQDD 108 (127)
T ss_pred chHHHHHHHHHHCCCCcceE--EeeCC--EEEEEECCHHHHHHHHHHHHHHcCCCC---EEEEecC
Confidence 467788888888883 3333 22332 599999999999999999987543332 5555543
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.34 E-value=49 Score=31.12 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=26.7
Q ss_pred EEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 178 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 178 afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|||.|++..+|..|.+.+...+. + .+++..|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~---~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--N---SWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--C---CceEeeCCCcc
Confidence 79999999999999998776543 3 56777665444
No 247
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=31.21 E-value=2.3e+02 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=10.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCC
Q 019494 46 ALVQFSDTETASSAKNALDGR 66 (340)
Q Consensus 46 AFVeF~~~e~A~~Ai~~lng~ 66 (340)
|-+.++|.+.-..-++.|+..
T Consensus 42 a~lk~KDp~qi~~~m~kldem 62 (487)
T KOG4672|consen 42 AVLKYKDPDQITSKMEKLDEM 62 (487)
T ss_pred hhhccCCHHHHHHHHHhhccc
Confidence 444555555555555555543
No 248
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.70 E-value=1.7e+02 Score=24.54 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=32.0
Q ss_pred cCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChHHHHH
Q 019494 144 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVV 190 (340)
Q Consensus 144 nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~ 190 (340)
..+...+..++++.++. |+ +|.+|..+...+|. -|||.+....+|..
T Consensus 88 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aid 137 (145)
T PTZ00191 88 IVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALD 137 (145)
T ss_pred EEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHH
Confidence 34457888898888876 66 77777754433332 59999987666543
No 249
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=29.32 E-value=1.7e+02 Score=19.25 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHcccC-CeeEEEEEcCCCCe-EEEEEcCChHHHHHHH
Q 019494 148 AVTLDVLHMVFSAFG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAK 192 (340)
Q Consensus 148 ~vt~~~L~~~F~~fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~A~ 192 (340)
.-.-.++.+++...| .|..+.+.....+. ..-+.+++.+.|.+++
T Consensus 9 ~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 9 PGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred CChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 445566778888877 78777766543221 3556677877777765
No 250
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.21 E-value=1.1e+02 Score=22.00 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=30.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCCCccCC--CCC-CCCceEEEeecc
Q 019494 45 QALVQFSDTETASSAKNALDGRSIPRYLL--PEN-MGPCTLRITYSA 88 (340)
Q Consensus 45 ~AFVeF~~~e~A~~Ai~~lng~~i~~~~~--~~~-~~~~~l~v~~s~ 88 (340)
+.+|.|.+..+|.+|-+.|....|...++ |.. ..||-+.+.+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~ 49 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFEP 49 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEECh
Confidence 58999999999999999998877654333 222 245555555543
No 251
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=28.11 E-value=39 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=36.9
Q ss_pred ccCCCCCCC--HHHHHHhhcc-cCcee---EEEEee-----e-cCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 10 KYLQWQLSA--SGERAHVFSA-FGFVH---KITTFE-----K-TAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 10 ~~l~~~~~~--ee~L~~lF~~-fG~V~---~v~~~~-----~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
|=|+.+|.+ |+++.+.++. ++... .+.-.. + ..-.-|+|.|.+.+++..-.+.++|..+
T Consensus 10 vVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 10 VVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp EEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred EEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 344555533 7888887777 67652 222111 0 1111299999999999999999999775
No 252
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.48 E-value=98 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHhhcccCceeEEEEe
Q 019494 20 GERAHVFSAFGFVHKITTF 38 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~ 38 (340)
.+||+.|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998765443
No 253
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=26.14 E-value=34 Score=35.37 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=46.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
+..++|++++.-. ++-++.+...+|.|.+....+ |+|.+|.+.+-+.+|+..++-..+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCC
Confidence 3456777777643 577889999999998886543 699999999999999998887664
No 254
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=25.91 E-value=6.6e+02 Score=24.89 Aligned_cols=15 Identities=0% Similarity=-0.011 Sum_probs=7.4
Q ss_pred CHHHHHHhhcccCce
Q 019494 18 ASGERAHVFSAFGFV 32 (340)
Q Consensus 18 ~ee~L~~lF~~fG~V 32 (340)
|.+++....++.+++
T Consensus 48 Dp~qi~~~m~kldem 62 (487)
T KOG4672|consen 48 DPDQITSKMEKLDEM 62 (487)
T ss_pred CHHHHHHHHHhhccc
Confidence 344555555555543
No 255
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=25.41 E-value=2.1e+02 Score=30.61 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=4.4
Q ss_pred CCCCcccCCCCC
Q 019494 309 MGPGMMQMHMPG 320 (340)
Q Consensus 309 ~~pg~~q~~~p~ 320 (340)
++++++++-||+
T Consensus 610 ~~~~s~~~~~pp 621 (756)
T KOG2375|consen 610 QQPGSPPQFMPP 621 (756)
T ss_pred cccccccccCCC
Confidence 333433333333
No 256
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=24.56 E-value=1.5e+02 Score=22.88 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=31.2
Q ss_pred CCCCHHHHHHH-------Hccc-CCeeEEEEEc----------CCCCeEEEEEcCChHHHHHHHHH
Q 019494 147 YAVTLDVLHMV-------FSAF-GPVQKIAMFD----------KNGGLQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 147 ~~vt~~~L~~~-------F~~f-G~v~~v~i~~----------~~~g~~afV~F~~~~~A~~A~~~ 194 (340)
.+++++++..+ +... |+|.++.-.. ...|.+.++.|.-..++.+.++.
T Consensus 16 p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 16 PDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 36677665554 4444 4777776432 23577789999977777777765
No 257
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=24.51 E-value=2e+02 Score=20.54 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHhhcccCc-eeEEEEeee---cCCceEEEEeC-CHHHHHHHHHHhcCC
Q 019494 13 QWQLSASGERAHVFSAFGF-VHKITTFEK---TAGFQALVQFS-DTETASSAKNALDGR 66 (340)
Q Consensus 13 ~~~~~~ee~L~~lF~~fG~-V~~v~~~~~---~~~~~AFVeF~-~~e~A~~Ai~~lng~ 66 (340)
++.+-.--++.+.|+.+|. +++|...+. .....=||++. +.+..++|++.|...
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 4444445677788888874 677755441 22334677777 555667788887753
No 258
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=24.05 E-value=97 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCHHHHHHHHcccCCeeEEEEE-cCC--CCeEEEEEcCChHHH
Q 019494 149 VTLDVLHMVFSAFGPVQKIAMF-DKN--GGLQALIQYPDVQTA 188 (340)
Q Consensus 149 vt~~~L~~~F~~fG~v~~v~i~-~~~--~g~~afV~F~~~~~A 188 (340)
++.++|.+.|+.|..+. |+.+ .+. .|+ ++|+|..--+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~-aiv~F~~~w~G 69 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGF-AIVEFNKDWSG 69 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEE-EEEE--SSHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEE-EEEEECCChHH
Confidence 46678999999999864 5543 332 344 99999964333
No 259
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.87 E-value=2.6e+02 Score=19.18 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=29.6
Q ss_pred cCCCCCCCHHHHHHhhcccC-ceeEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019494 11 YLQWQLSASGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKN 61 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~fG-~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~ 61 (340)
.+++.+-.-.++-++|.+.| .|..+.+.....+..--+.+.+.+.|.++++
T Consensus 7 ~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 7 FLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred EEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 45666655677788888886 4878766553333222333455555555554
No 260
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.45 E-value=6.6e+02 Score=23.69 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=84.4
Q ss_pred HHHhhcccCceeEEEEeeec-----------CCceEEEEeCCHHHHHHHHH----HhcCCCCCccCCCCCCCCceEEEee
Q 019494 22 RAHVFSAFGFVHKITTFEKT-----------AGFQALVQFSDTETASSAKN----ALDGRSIPRYLLPENMGPCTLRITY 86 (340)
Q Consensus 22 L~~lF~~fG~V~~v~~~~~~-----------~~~~AFVeF~~~e~A~~Ai~----~lng~~i~~~~~~~~~~~~~l~v~~ 86 (340)
+-.-|.+||.|.+|-+++.. ...-..+.|-+.+.+..-.+ .|....- .++...|.++|
T Consensus 32 Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~-------~L~S~~L~lsF 104 (309)
T PF10567_consen 32 FLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT-------KLKSESLTLSF 104 (309)
T ss_pred HHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH-------hcCCcceeEEE
Confidence 34568889999999888632 12349999999998876443 2332221 25677888887
Q ss_pred ccCCccc-ccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHH-HHH---ccc
Q 019494 87 SAHTDLS-VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH-MVF---SAF 161 (340)
Q Consensus 87 s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~-~~F---~~f 161 (340)
..-+... ...+.+. .++ ...+... ..... .....++.|.|-+. ..++.++|. +-+ ..=
T Consensus 105 V~l~y~~~~~~~~~~-~~~-~~~~~~~---------L~~~i---~~~gATRSl~IeF~---~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 105 VSLNYQKKTDPNDEE-ADF-SDYLVAS---------LQYNI---INRGATRSLAIEFK---DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred EEEeccccccccccc-cch-hhHHhhh---------hhhee---ecCCcceEEEEEec---CccchhHHHHHhhhhhccC
Confidence 6532111 0001111 111 0000000 00000 00012555664433 344334332 221 222
Q ss_pred C----CeeEEEEEcCC---CC---eEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 162 G----PVQKIAMFDKN---GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 162 G----~v~~v~i~~~~---~g---~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
+ .|+.|.++... +. -+|.++|-+...|.+.++.|.-....-+ .-+|.|..
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~---Iskc~fVs 227 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLG---ISKCFFVS 227 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccC---cceEEEEe
Confidence 2 35666665321 11 1799999999999999998885533322 44555544
No 261
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=22.22 E-value=1.5e+02 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhc
Q 019494 19 SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALD 64 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~ln 64 (340)
-++|.+.-+ |++.+|.+.++ .-++--||+|.+.++|...++.-.
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 344544444 89999987652 223459999999999998776433
No 262
>PRK11901 hypothetical protein; Reviewed
Probab=21.97 E-value=1.9e+02 Score=27.59 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred EeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCC---eEEEEE--cCChHHHHHHHHHh
Q 019494 141 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQ--YPDVQTAVVAKEAL 195 (340)
Q Consensus 141 ~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g---~~afV~--F~~~~~A~~A~~~l 195 (340)
|..-|-..-+++.|..+-.+++ +..+.++...+. .|..|. |.++++|..|++.|
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhC
No 263
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=21.81 E-value=2.5e+02 Score=28.22 Aligned_cols=15 Identities=47% Similarity=0.944 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCc
Q 019494 299 HPYMPPGSMPMGPGM 313 (340)
Q Consensus 299 ~~~~p~g~~~~~pg~ 313 (340)
.+++|+|-|++.||-
T Consensus 583 ~~~vP~~~M~~~PG~ 597 (654)
T COG5180 583 SPHVPAGFMAAGPGA 597 (654)
T ss_pred CCCCCccccccCCCC
Confidence 345577777755443
No 264
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.13 E-value=3.1e+02 Score=19.32 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHhhcccC-ceeEEEEee--e-cCCceEEEEeCC---HHHHHHHHHHhcC
Q 019494 12 LQWQLSASGERAHVFSAFG-FVHKITTFE--K-TAGFQALVQFSD---TETASSAKNALDG 65 (340)
Q Consensus 12 l~~~~~~ee~L~~lF~~fG-~V~~v~~~~--~-~~~~~AFVeF~~---~e~A~~Ai~~lng 65 (340)
|...+-.-.++.++|+.+| .|.+|...+ + .....-||++.. .+..+++++.|..
T Consensus 6 l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 6 LKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred eCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444445677888999996 577775544 2 233447888874 5666778887765
Done!