Query 019494
Match_columns 340
No_of_seqs 263 out of 1514
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.4E-30 8.2E-35 230.2 13.8 161 5-217 13-182 (213)
2 1fxl_A Paraneoplastic encephal 100.0 5.4E-29 1.9E-33 210.9 17.4 155 7-213 2-167 (167)
3 3pgw_A U1-A; protein-RNA compl 100.0 1.5E-28 5.1E-33 227.0 20.7 197 4-215 6-282 (282)
4 1b7f_A Protein (SXL-lethal pro 100.0 5.7E-29 1.9E-33 211.5 16.4 156 6-213 2-168 (168)
5 3tyt_A Heterogeneous nuclear r 100.0 7.7E-29 2.6E-33 219.6 17.3 187 6-213 3-204 (205)
6 2adc_A Polypyrimidine tract-bi 100.0 2.5E-28 8.5E-33 219.5 20.2 187 6-216 33-228 (229)
7 3md3_A Nuclear and cytoplasmic 100.0 1.4E-28 4.8E-33 208.2 16.7 155 9-215 2-166 (166)
8 2qfj_A FBP-interacting repress 100.0 8.4E-29 2.9E-33 219.1 14.8 170 5-217 26-206 (216)
9 3nmr_A Cugbp ELAV-like family 100.0 4.5E-28 1.5E-32 207.1 17.3 161 7-214 3-175 (175)
10 1qm9_A Polypyrimidine tract-bi 100.0 4.3E-28 1.5E-32 212.3 17.4 186 7-216 3-197 (198)
11 2g4b_A Splicing factor U2AF 65 100.0 8.6E-28 3E-32 205.1 15.2 153 4-213 1-171 (172)
12 1l3k_A Heterogeneous nuclear r 99.9 3.1E-27 1.1E-31 205.9 15.8 164 6-219 12-186 (196)
13 2yh0_A Splicing factor U2AF 65 99.9 6.9E-27 2.4E-31 204.0 17.3 175 6-217 3-195 (198)
14 2cjk_A Nuclear polyadenylated 99.9 1.2E-27 4E-32 203.3 11.9 155 5-216 1-166 (167)
15 3zzy_A Polypyrimidine tract-bi 99.9 3.3E-27 1.1E-31 193.2 12.7 108 131-239 22-129 (130)
16 1fje_B Nucleolin RBD12, protei 99.9 1.6E-27 5.6E-32 204.3 10.1 158 6-216 12-174 (175)
17 3smz_A Protein raver-1, ribonu 99.9 6.3E-26 2.2E-30 209.5 16.8 161 7-218 95-266 (284)
18 3sde_A Paraspeckle component 1 99.9 2E-25 6.7E-30 204.5 16.6 151 5-217 20-180 (261)
19 3smz_A Protein raver-1, ribonu 99.9 4.9E-25 1.7E-29 203.6 17.3 151 5-218 20-177 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 2.4E-25 8.2E-30 206.5 14.9 163 6-216 116-291 (292)
21 2e5i_A Heterogeneous nuclear r 99.9 4.3E-25 1.5E-29 179.7 13.1 102 133-236 21-122 (124)
22 2ghp_A U4/U6 snRNA-associated 99.9 7.2E-25 2.5E-29 203.2 15.3 151 5-217 39-198 (292)
23 1sjr_A Polypyrimidine tract-bi 99.9 2.3E-24 7.8E-29 182.8 12.2 111 132-244 41-152 (164)
24 3zzy_A Polypyrimidine tract-bi 99.9 2.3E-21 7.8E-26 158.5 10.1 101 6-113 27-129 (130)
25 2i2y_A Fusion protein consists 99.8 2.3E-20 7.9E-25 156.6 13.4 137 41-216 11-148 (150)
26 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-19 4.5E-24 153.1 14.9 138 40-218 10-152 (158)
27 1sjr_A Polypyrimidine tract-bi 99.8 2E-19 6.7E-24 152.5 10.8 100 7-113 46-147 (164)
28 2e5i_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 144.1 10.7 95 8-110 26-122 (124)
29 3r27_A HnRNP L, heterogeneous 99.7 9.3E-18 3.2E-22 130.9 10.7 80 132-218 18-99 (100)
30 4f25_A Polyadenylate-binding p 99.7 2.9E-18 9.8E-23 137.6 7.6 75 7-90 5-83 (115)
31 1wex_A Hypothetical protein (r 99.7 6.9E-17 2.3E-21 127.3 11.9 81 133-220 13-95 (104)
32 3r27_A HnRNP L, heterogeneous 99.7 1.6E-17 5.6E-22 129.5 8.0 80 4-92 18-99 (100)
33 4fxv_A ELAV-like protein 1; RN 99.7 3.2E-17 1.1E-21 128.0 9.5 76 135-216 19-99 (99)
34 1sjq_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 128.3 8.9 80 134-220 15-96 (105)
35 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.5E-21 128.5 10.8 81 133-220 29-111 (119)
36 2lea_A Serine/arginine-rich sp 99.7 4.6E-17 1.6E-21 134.4 7.2 120 44-218 5-129 (135)
37 2wbr_A GW182, gawky, LD47780P; 99.7 1E-16 3.4E-21 121.3 8.3 71 140-215 10-80 (89)
38 2cq1_A PTB-like protein L; RRM 99.7 3.5E-16 1.2E-20 122.6 11.5 80 133-219 13-94 (101)
39 2diu_A KIAA0430 protein; struc 99.7 3.6E-16 1.2E-20 119.5 10.8 79 133-221 6-89 (96)
40 4f25_A Polyadenylate-binding p 99.7 1.8E-16 6.1E-21 127.0 9.5 79 135-219 5-86 (115)
41 2dgu_A Heterogeneous nuclear r 99.7 6.7E-16 2.3E-20 121.0 12.3 77 134-219 10-86 (103)
42 3s8s_A Histone-lysine N-methyl 99.6 5.7E-16 2E-20 123.3 10.4 80 133-218 4-88 (110)
43 1x4d_A Matrin 3; structural ge 99.6 2.5E-16 8.4E-21 123.6 8.0 76 134-216 14-92 (102)
44 4fxv_A ELAV-like protein 1; RN 99.6 2.7E-16 9.4E-21 122.7 7.5 74 7-89 19-98 (99)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.1E-16 2.1E-20 116.5 9.1 75 134-214 6-85 (85)
46 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.9E-15 6.3E-20 118.3 12.1 80 134-219 14-96 (103)
47 2dnq_A RNA-binding protein 4B; 99.6 1.3E-15 4.4E-20 116.3 10.9 76 134-218 7-82 (90)
48 1whw_A Hypothetical protein ri 99.6 1.4E-15 4.7E-20 118.1 10.9 79 134-218 7-90 (99)
49 1x4c_A Splicing factor, argini 99.6 2.4E-15 8.1E-20 119.0 12.5 76 135-218 15-95 (108)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8.8E-16 3E-20 119.9 9.8 81 133-219 10-95 (102)
51 1rk8_A CG8781-PA, CG8781-PA pr 99.6 7.1E-16 2.4E-20 131.3 9.9 140 48-219 11-155 (165)
52 1sjq_A Polypyrimidine tract-bi 99.6 3.4E-16 1.2E-20 123.2 7.1 78 6-94 15-96 (105)
53 3bs9_A Nucleolysin TIA-1 isofo 99.6 9.7E-16 3.3E-20 115.9 9.4 76 135-216 6-86 (87)
54 2x1f_A MRNA 3'-END-processing 99.6 1E-15 3.6E-20 118.2 9.7 79 135-219 2-85 (96)
55 2cq3_A RNA-binding protein 9; 99.6 3.3E-15 1.1E-19 116.8 12.7 80 134-219 14-96 (103)
56 1x5s_A Cold-inducible RNA-bind 99.6 1.6E-15 5.5E-20 118.4 10.7 80 133-218 10-94 (102)
57 2e5h_A Zinc finger CCHC-type a 99.6 1.9E-15 6.3E-20 116.1 10.8 76 133-214 14-94 (94)
58 1why_A Hypothetical protein ri 99.6 1.5E-15 5.2E-20 117.5 10.4 77 134-217 16-94 (97)
59 1x4f_A Matrin 3; structural ge 99.6 5.4E-16 1.8E-20 123.6 7.9 78 133-217 23-103 (112)
60 2cpj_A Non-POU domain-containi 99.6 1.9E-15 6.4E-20 117.5 10.7 78 133-217 13-90 (99)
61 1wex_A Hypothetical protein (r 99.6 9.8E-16 3.3E-20 120.7 9.2 81 4-93 12-94 (104)
62 1x4d_A Matrin 3; structural ge 99.6 4.6E-16 1.6E-20 122.1 6.9 76 5-89 13-91 (102)
63 3lqv_A PRE-mRNA branch site pr 99.6 3.4E-16 1.2E-20 125.0 6.3 101 5-163 6-109 (115)
64 2ad9_A Polypyrimidine tract-bi 99.6 6.1E-16 2.1E-20 124.6 7.8 82 4-94 28-111 (119)
65 2lxi_A RNA-binding protein 10; 99.6 2.7E-16 9.4E-21 120.7 5.5 77 135-217 1-84 (91)
66 2wbr_A GW182, gawky, LD47780P; 99.6 4.5E-16 1.5E-20 117.8 6.4 75 5-90 5-81 (89)
67 2dnz_A Probable RNA-binding pr 99.6 2.6E-15 8.7E-20 115.6 10.9 78 134-217 4-86 (95)
68 2hvz_A Splicing factor, argini 99.6 1.8E-15 6.1E-20 118.0 10.1 74 140-217 3-76 (101)
69 2dgx_A KIAA0430 protein; RRM d 99.6 1.9E-15 6.6E-20 116.9 9.9 77 135-217 9-91 (96)
70 2dgo_A Cytotoxic granule-assoc 99.6 5E-15 1.7E-19 118.1 12.6 80 134-219 14-98 (115)
71 2dgs_A DAZ-associated protein 99.6 3.7E-15 1.3E-19 115.7 11.4 78 134-218 9-91 (99)
72 3md1_A Nuclear and cytoplasmic 99.6 2.3E-15 7.8E-20 112.8 9.6 74 140-217 4-82 (83)
73 2ytc_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.5E-20 113.9 9.1 74 134-214 11-85 (85)
74 2a3j_A U1 small nuclear ribonu 99.6 2.1E-15 7.1E-20 123.1 9.8 81 134-220 28-114 (127)
75 2cph_A RNA binding motif prote 99.6 3.9E-15 1.3E-19 117.1 11.2 79 134-218 14-99 (107)
76 2do4_A Squamous cell carcinoma 99.6 3.3E-15 1.1E-19 116.2 10.5 78 134-217 16-97 (100)
77 2dnh_A Bruno-like 5, RNA bindi 99.6 4E-15 1.4E-19 116.7 11.0 80 134-219 14-100 (105)
78 2err_A Ataxin-2-binding protei 99.6 2.8E-15 9.5E-20 118.9 10.2 78 134-217 28-108 (109)
79 1x4a_A Splicing factor, argini 99.6 6E-15 2E-19 116.6 12.1 78 134-217 21-100 (109)
80 2fy1_A RNA-binding motif prote 99.6 6.5E-15 2.2E-19 118.1 12.4 78 135-218 7-88 (116)
81 2cq1_A PTB-like protein L; RRM 99.6 1.5E-15 5E-20 119.0 8.4 81 4-93 12-94 (101)
82 2dgv_A HnRNP M, heterogeneous 99.6 2.1E-15 7.3E-20 115.3 9.1 78 134-217 7-87 (92)
83 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 133.1 10.3 79 134-218 3-82 (205)
84 2cqc_A Arginine/serine-rich sp 99.6 2.4E-15 8.1E-20 115.7 9.3 76 134-215 14-94 (95)
85 1x5t_A Splicing factor 3B subu 99.6 2.1E-15 7E-20 116.3 8.9 79 134-218 4-88 (96)
86 2xnq_A Nuclear polyadenylated 99.6 4.3E-15 1.5E-19 115.3 10.7 75 133-216 20-95 (97)
87 2cpf_A RNA binding motif prote 99.6 2.2E-15 7.5E-20 116.7 8.9 78 134-217 4-89 (98)
88 4a8x_A RNA-binding protein wit 99.6 3.1E-15 1.1E-19 113.3 9.4 77 135-217 4-86 (88)
89 2la4_A Nuclear and cytoplasmic 99.6 1.8E-15 6.2E-20 117.9 8.3 75 135-216 27-101 (101)
90 2lkz_A RNA-binding protein 5; 99.6 2E-15 6.8E-20 116.9 8.4 74 136-215 10-94 (95)
91 2cq0_A Eukaryotic translation 99.6 2.9E-15 1E-19 117.2 9.5 79 134-218 14-97 (103)
92 2ywk_A Putative RNA-binding pr 99.6 2.7E-15 9.1E-20 115.5 9.0 76 134-215 15-94 (95)
93 2jvo_A Nucleolar protein 3; nu 99.6 3.5E-15 1.2E-19 118.2 9.9 76 134-218 30-105 (108)
94 2dgt_A RNA-binding protein 30; 99.6 5.7E-15 1.9E-19 113.1 10.8 75 134-217 9-83 (92)
95 1x5u_A Splicing factor 3B subu 99.6 6.4E-15 2.2E-19 115.5 11.1 80 134-219 14-98 (105)
96 2cpz_A CUG triplet repeat RNA- 99.6 4.6E-15 1.6E-19 118.5 10.4 80 133-218 23-107 (115)
97 2d9p_A Polyadenylate-binding p 99.6 4.7E-15 1.6E-19 116.0 10.2 79 134-218 14-95 (103)
98 2jvr_A Nucleolar protein 3; RN 99.6 2.1E-15 7E-20 120.2 8.1 74 139-216 30-105 (111)
99 1x4g_A Nucleolysin TIAR; struc 99.6 5.6E-15 1.9E-19 116.9 10.6 78 134-218 24-101 (109)
100 3pgw_S U1-70K; protein-RNA com 99.6 1.1E-15 3.7E-20 149.7 7.6 78 135-218 102-184 (437)
101 1whx_A Hypothetical protein ri 99.6 3.2E-15 1.1E-19 119.0 8.9 77 135-218 10-86 (111)
102 2dnm_A SRP46 splicing factor; 99.6 6.7E-15 2.3E-19 115.1 10.4 78 134-217 12-94 (103)
103 1nu4_A U1A RNA binding domain; 99.6 2.7E-15 9.2E-20 115.9 8.0 81 133-219 6-92 (97)
104 2kvi_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 114.8 9.2 77 133-218 8-85 (96)
105 1oo0_B CG8781-PA, drosophila Y 99.6 5.9E-15 2E-19 116.8 10.0 78 134-217 25-107 (110)
106 2dnp_A RNA-binding protein 14; 99.6 8.3E-15 2.8E-19 111.7 10.4 75 134-217 8-82 (90)
107 2la6_A RNA-binding protein FUS 99.6 7E-15 2.4E-19 114.2 10.1 75 134-214 12-99 (99)
108 2do0_A HnRNP M, heterogeneous 99.6 1.8E-14 6.2E-19 114.6 12.6 78 134-217 14-95 (114)
109 2cpi_A CCR4-NOT transcription 99.6 2.3E-15 7.9E-20 119.7 7.2 77 135-217 15-102 (111)
110 2khc_A Testis-specific RNP-typ 99.6 2.9E-15 1E-19 120.1 7.9 76 133-214 38-118 (118)
111 1x4f_A Matrin 3; structural ge 99.6 1.8E-15 6E-20 120.6 6.5 78 4-90 22-102 (112)
112 1x4h_A RNA-binding protein 28; 99.6 1.2E-14 4.1E-19 115.0 11.3 79 134-218 14-103 (111)
113 1p27_B RNA-binding protein 8A; 99.6 8E-15 2.7E-19 115.2 10.2 78 134-217 22-104 (106)
114 3ex7_B RNA-binding protein 8A; 99.6 7.1E-15 2.4E-19 119.2 10.0 79 134-218 21-104 (126)
115 2div_A TRNA selenocysteine ass 99.6 6.1E-15 2.1E-19 114.4 9.2 78 134-217 8-95 (99)
116 2dgp_A Bruno-like 4, RNA bindi 99.6 7.3E-15 2.5E-19 115.4 9.7 78 134-217 12-97 (106)
117 2jrs_A RNA-binding protein 39; 99.6 9E-15 3.1E-19 115.8 10.2 78 134-217 25-107 (108)
118 3p5t_L Cleavage and polyadenyl 99.6 1.6E-15 5.4E-20 115.9 5.6 74 140-217 4-84 (90)
119 2cq2_A Hypothetical protein LO 99.6 3.8E-15 1.3E-19 118.9 7.9 79 134-217 24-107 (114)
120 2kxn_B Transformer-2 protein h 99.6 6.6E-15 2.3E-19 120.4 9.5 79 133-217 44-127 (129)
121 2cqd_A RNA-binding region cont 99.6 1.6E-14 5.5E-19 115.4 11.6 78 133-217 15-97 (116)
122 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.2E-19 122.3 11.2 78 134-217 38-120 (156)
123 2cqh_A IGF-II mRNA-binding pro 99.6 4.4E-15 1.5E-19 113.9 7.7 76 134-217 7-84 (93)
124 2e5j_A Methenyltetrahydrofolat 99.6 9.6E-15 3.3E-19 113.1 9.6 76 135-217 19-95 (97)
125 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-14 3.4E-19 120.3 10.1 78 134-217 41-123 (139)
126 3ns6_A Eukaryotic translation 99.6 2.6E-15 9E-20 117.1 6.1 76 135-216 6-93 (100)
127 2kt5_A RNA and export factor-b 99.6 1.8E-14 6E-19 116.7 11.1 79 134-218 34-116 (124)
128 1p1t_A Cleavage stimulation fa 99.6 6E-15 2.1E-19 115.4 8.1 79 135-219 8-91 (104)
129 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.8E-19 112.5 10.0 75 134-217 14-90 (99)
130 3s8s_A Histone-lysine N-methyl 99.6 6.7E-15 2.3E-19 117.0 7.8 76 6-90 5-86 (110)
131 1wf1_A RNA-binding protein RAL 99.6 1.3E-14 4.4E-19 115.0 9.5 74 135-217 27-101 (110)
132 3ucg_A Polyadenylate-binding p 99.6 1E-14 3.6E-19 110.6 8.6 76 135-217 6-86 (89)
133 2hvz_A Splicing factor, argini 99.6 6.4E-15 2.2E-19 114.8 7.4 74 8-91 1-76 (101)
134 1wg1_A KIAA1579 protein, homol 99.6 1.5E-14 5E-19 110.0 9.3 77 135-219 5-81 (88)
135 3ulh_A THO complex subunit 4; 99.6 2.5E-14 8.4E-19 112.5 10.9 75 134-214 28-106 (107)
136 2lkz_A RNA-binding protein 5; 99.6 4E-15 1.4E-19 115.2 6.1 81 4-89 6-94 (95)
137 2dhg_A TRNA selenocysteine ass 99.5 8.9E-15 3E-19 114.5 8.0 79 134-218 8-92 (104)
138 2x1f_A MRNA 3'-END-processing 99.5 8.5E-15 2.9E-19 113.1 7.6 77 6-91 1-83 (96)
139 3lqv_A PRE-mRNA branch site pr 99.5 2E-14 6.9E-19 114.6 10.0 78 134-217 7-86 (115)
140 2dnz_A Probable RNA-binding pr 99.5 1.7E-14 5.7E-19 110.9 9.2 76 6-90 4-85 (95)
141 2cpe_A RNA-binding protein EWS 99.5 1.5E-14 5.3E-19 114.9 9.0 79 134-218 14-105 (113)
142 2e44_A Insulin-like growth fac 99.5 2.1E-14 7E-19 110.7 9.4 77 135-217 15-93 (96)
143 1wi8_A EIF-4B, eukaryotic tran 99.5 1.6E-14 5.6E-19 113.1 8.7 76 135-218 15-96 (104)
144 1x5p_A Negative elongation fac 99.5 4.7E-14 1.6E-18 109.1 11.1 76 134-218 14-89 (97)
145 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.2E-14 4.1E-19 109.8 7.4 76 6-90 5-86 (87)
146 1x5p_A Negative elongation fac 99.5 1.5E-14 5.1E-19 112.0 8.1 75 5-90 13-87 (97)
147 2ek1_A RNA-binding protein 12; 99.5 5.3E-15 1.8E-19 113.8 5.4 76 134-215 14-94 (95)
148 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1E-14 3.4E-19 109.8 6.8 75 5-88 5-85 (85)
149 2dis_A Unnamed protein product 99.5 1.7E-14 5.8E-19 113.9 8.4 79 134-218 7-94 (109)
150 2mss_A Protein (musashi1); RNA 99.5 9.5E-15 3.3E-19 107.4 6.4 69 140-213 2-75 (75)
151 1why_A Hypothetical protein ri 99.5 1.7E-14 5.9E-19 111.5 8.2 74 6-90 16-93 (97)
152 2e5g_A U6 snRNA-specific termi 99.5 3.2E-14 1.1E-18 109.4 9.5 76 135-217 8-83 (94)
153 3md1_A Nuclear and cytoplasmic 99.5 1.8E-14 6.2E-19 107.8 7.9 74 8-90 2-81 (83)
154 2cq4_A RNA binding motif prote 99.5 1.9E-14 6.5E-19 114.6 8.5 76 135-217 25-105 (114)
155 1x4e_A RNA binding motif, sing 99.5 4E-15 1.4E-19 112.1 4.3 74 134-213 4-82 (85)
156 2lxi_A RNA-binding protein 10; 99.5 2.5E-15 8.7E-20 115.3 3.1 75 8-90 2-83 (91)
157 3beg_B Splicing factor, argini 99.5 2.3E-14 8E-19 114.6 8.8 73 135-215 16-93 (115)
158 2cqp_A RNA-binding protein 12; 99.5 9.6E-15 3.3E-19 113.1 6.4 76 135-216 15-95 (98)
159 2e5h_A Zinc finger CCHC-type a 99.5 1.6E-14 5.5E-19 110.8 7.6 74 6-88 15-94 (94)
160 1x4a_A Splicing factor, argini 99.5 1.8E-14 6.1E-19 113.9 8.0 76 6-90 21-99 (109)
161 2cpj_A Non-POU domain-containi 99.5 1.9E-14 6.7E-19 111.7 8.1 75 5-90 13-89 (99)
162 2d9p_A Polyadenylate-binding p 99.5 2.6E-14 8.8E-19 111.7 8.5 76 6-90 14-93 (103)
163 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4.3E-14 1.5E-18 116.3 10.2 75 133-213 61-140 (140)
164 2dng_A Eukaryotic translation 99.5 4.1E-14 1.4E-18 110.6 9.5 76 134-217 14-94 (103)
165 2m2b_A RNA-binding protein 10; 99.5 1.7E-14 5.9E-19 118.0 7.7 78 134-218 22-110 (131)
166 2a3j_A U1 small nuclear ribonu 99.5 2E-14 6.9E-19 117.2 8.0 77 5-90 27-110 (127)
167 2j76_E EIF-4B, EIF4B, eukaryot 99.5 9.2E-15 3.1E-19 113.9 5.7 76 134-217 18-99 (100)
168 2dh8_A DAZ-associated protein 99.5 4.1E-14 1.4E-18 111.0 9.4 78 134-218 15-97 (105)
169 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.8E-14 9.5E-19 111.5 8.4 76 6-90 14-93 (103)
170 1whw_A Hypothetical protein ri 99.5 2.3E-14 7.9E-19 111.1 7.8 77 5-90 6-88 (99)
171 1x5o_A RNA binding motif, sing 99.5 3.6E-14 1.2E-18 112.9 9.1 80 134-216 24-112 (114)
172 2dnq_A RNA-binding protein 4B; 99.5 3.5E-14 1.2E-18 108.3 8.6 73 5-90 6-80 (90)
173 3s7r_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 106.8 9.1 73 134-213 10-87 (87)
174 2jwn_A Embryonic polyadenylate 99.5 2.5E-14 8.6E-19 115.6 8.2 77 135-218 36-117 (124)
175 2cpx_A Hypothetical protein FL 99.5 3E-14 1E-18 113.5 8.5 79 134-218 24-107 (115)
176 1x5s_A Cold-inducible RNA-bind 99.5 2.2E-14 7.6E-19 111.8 7.4 76 6-90 11-92 (102)
177 3d2w_A TAR DNA-binding protein 99.5 4.4E-14 1.5E-18 107.8 9.0 77 134-218 10-86 (89)
178 2fc9_A NCL protein; structure 99.5 5.6E-14 1.9E-18 109.4 9.7 75 134-217 14-92 (101)
179 2err_A Ataxin-2-binding protei 99.5 1.8E-14 6.2E-19 114.1 7.0 76 6-90 28-107 (109)
180 2do4_A Squamous cell carcinoma 99.5 3.2E-14 1.1E-18 110.6 8.2 76 6-90 16-96 (100)
181 2cpf_A RNA binding motif prote 99.5 2.8E-14 9.6E-19 110.4 7.9 77 5-90 3-88 (98)
182 2cq3_A RNA-binding protein 9; 99.5 3.9E-14 1.3E-18 110.6 8.7 77 6-91 14-94 (103)
183 2dgv_A HnRNP M, heterogeneous 99.5 2.5E-14 8.4E-19 109.3 7.4 76 6-90 7-86 (92)
184 1s79_A Lupus LA protein; RRM, 99.5 2.9E-14 9.9E-19 112.0 7.8 74 135-215 11-88 (103)
185 2dnm_A SRP46 splicing factor; 99.5 2.4E-14 8.3E-19 111.9 7.3 77 5-90 11-93 (103)
186 2dgs_A DAZ-associated protein 99.5 4.7E-14 1.6E-18 109.4 8.9 75 6-90 9-89 (99)
187 3q2s_C Cleavage and polyadenyl 99.5 6.1E-15 2.1E-19 132.3 4.4 75 140-218 71-152 (229)
188 2cqc_A Arginine/serine-rich sp 99.5 2.7E-14 9.1E-19 109.7 7.2 75 6-89 14-94 (95)
189 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.4E-19 115.6 5.6 75 7-90 28-105 (111)
190 2kxn_B Transformer-2 protein h 99.5 4.4E-14 1.5E-18 115.5 8.9 76 6-90 45-126 (129)
191 2ywk_A Putative RNA-binding pr 99.5 2.8E-14 9.7E-19 109.6 7.3 75 6-89 15-94 (95)
192 2la6_A RNA-binding protein FUS 99.5 3.7E-14 1.3E-18 110.1 7.9 75 5-88 11-99 (99)
193 1fjc_A Nucleolin RBD2, protein 99.5 2.5E-14 8.6E-19 110.2 6.9 78 134-217 15-92 (96)
194 2rs2_A Musashi-1, RNA-binding 99.5 5.1E-14 1.8E-18 111.6 8.9 78 134-218 24-106 (109)
195 2dnh_A Bruno-like 5, RNA bindi 99.5 4.9E-14 1.7E-18 110.4 8.7 77 6-90 14-97 (105)
196 2cq0_A Eukaryotic translation 99.5 2.9E-14 9.8E-19 111.5 7.2 76 6-90 14-95 (103)
197 3n9u_C Cleavage and polyadenyl 99.5 2.1E-14 7.2E-19 121.3 6.9 78 135-218 55-139 (156)
198 2cpz_A CUG triplet repeat RNA- 99.5 2.7E-14 9.2E-19 114.0 7.2 76 6-90 24-105 (115)
199 2dgx_A KIAA0430 protein; RRM d 99.5 2.8E-14 9.6E-19 110.3 7.1 77 5-90 7-90 (96)
200 4a8x_A RNA-binding protein wit 99.5 3.2E-14 1.1E-18 107.6 7.3 75 7-90 4-85 (88)
201 1whx_A Hypothetical protein ri 99.5 3.1E-14 1.1E-18 113.2 7.4 75 6-91 9-85 (111)
202 1x5u_A Splicing factor 3B subu 99.5 3.9E-14 1.3E-18 111.0 7.8 76 6-90 14-95 (105)
203 2ki2_A SS-DNA binding protein 99.5 8.4E-15 2.9E-19 111.6 3.9 74 140-218 4-82 (90)
204 2bz2_A Negative elongation fac 99.5 4E-14 1.4E-18 114.4 8.1 74 6-90 38-111 (121)
205 2ytc_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.3E-19 107.4 6.5 72 6-88 11-85 (85)
206 1x5t_A Splicing factor 3B subu 99.5 1.9E-14 6.4E-19 110.9 5.7 76 6-90 4-86 (96)
207 2jrs_A RNA-binding protein 39; 99.5 4.1E-14 1.4E-18 111.9 7.8 76 6-90 25-106 (108)
208 1p27_B RNA-binding protein 8A; 99.5 4.5E-14 1.5E-18 110.8 8.0 76 6-90 22-103 (106)
209 2la4_A Nuclear and cytoplasmic 99.5 2.2E-14 7.6E-19 111.7 6.0 72 7-89 27-100 (101)
210 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.3E-14 1.1E-18 104.8 6.6 69 140-213 3-76 (77)
211 2xnq_A Nuclear polyadenylated 99.5 6.1E-14 2.1E-18 108.8 8.3 74 4-90 19-95 (97)
212 2cqb_A Peptidyl-prolyl CIS-tra 99.5 2.4E-14 8.2E-19 111.6 6.0 78 5-91 10-93 (102)
213 2nlw_A Eukaryotic translation 99.5 6.9E-14 2.4E-18 110.0 8.6 77 135-216 15-100 (105)
214 1x4b_A Heterogeneous nuclear r 99.5 9.2E-14 3.1E-18 111.0 9.4 77 135-218 27-108 (116)
215 2e5j_A Methenyltetrahydrofolat 99.5 4.8E-14 1.7E-18 109.1 7.6 74 7-90 19-94 (97)
216 2khc_A Testis-specific RNP-typ 99.5 2.7E-14 9.2E-19 114.4 6.2 74 6-88 39-118 (118)
217 2dgo_A Cytotoxic granule-assoc 99.5 5.5E-14 1.9E-18 112.1 7.8 76 6-90 14-95 (115)
218 2cph_A RNA binding motif prote 99.5 7.5E-14 2.6E-18 109.7 8.3 76 6-90 14-97 (107)
219 2fy1_A RNA-binding motif prote 99.5 8.1E-14 2.8E-18 111.7 8.6 78 5-91 5-87 (116)
220 3p5t_L Cleavage and polyadenyl 99.5 2.4E-14 8.3E-19 109.3 5.2 73 9-90 3-83 (90)
221 2dgp_A Bruno-like 4, RNA bindi 99.5 5.2E-14 1.8E-18 110.5 7.2 79 6-90 12-96 (106)
222 3ulh_A THO complex subunit 4; 99.5 5.9E-14 2E-18 110.3 7.6 75 5-88 27-106 (107)
223 2pe8_A Splicing factor 45; RRM 99.5 1.3E-13 4.5E-18 108.6 9.5 79 133-217 6-95 (105)
224 2dgu_A Heterogeneous nuclear r 99.5 9.1E-14 3.1E-18 108.7 8.6 75 4-91 8-84 (103)
225 3ns6_A Eukaryotic translation 99.5 3.7E-14 1.3E-18 110.6 6.3 75 7-90 6-93 (100)
226 2cpi_A CCR4-NOT transcription 99.5 3.6E-14 1.2E-18 112.8 6.3 78 5-91 13-102 (111)
227 2do0_A HnRNP M, heterogeneous 99.5 7.4E-14 2.5E-18 111.0 8.1 77 5-90 13-94 (114)
228 2dgw_A Probable RNA-binding pr 99.5 3.2E-13 1.1E-17 103.0 11.4 75 135-217 10-88 (91)
229 1x4c_A Splicing factor, argini 99.5 8.9E-14 3.1E-18 109.8 8.3 73 6-90 14-93 (108)
230 2dgt_A RNA-binding protein 30; 99.5 6.2E-14 2.1E-18 107.3 7.2 73 5-90 8-82 (92)
231 1p1t_A Cleavage stimulation fa 99.5 5.1E-14 1.7E-18 110.0 6.8 76 6-90 7-88 (104)
232 2bz2_A Negative elongation fac 99.5 1.6E-13 5.6E-18 110.8 9.9 75 134-217 38-112 (121)
233 2kvi_A Nuclear polyadenylated 99.5 8.2E-14 2.8E-18 107.6 7.7 74 4-90 7-83 (96)
234 1nu4_A U1A RNA binding domain; 99.5 4.4E-14 1.5E-18 109.0 6.1 78 4-90 5-89 (97)
235 2cq2_A Hypothetical protein LO 99.5 2.9E-14 1E-18 113.7 5.2 79 5-90 23-106 (114)
236 2jvo_A Nucleolar protein 3; nu 99.5 8.6E-14 2.9E-18 110.1 7.8 72 6-90 30-103 (108)
237 2div_A TRNA selenocysteine ass 99.5 4E-14 1.4E-18 109.7 5.7 77 5-90 7-94 (99)
238 2cqg_A TDP-43, TAR DNA-binding 99.5 3.1E-13 1.1E-17 105.5 10.8 77 134-218 14-95 (103)
239 1x4g_A Nucleolysin TIAR; struc 99.5 6.9E-14 2.4E-18 110.5 7.1 74 6-90 24-99 (109)
240 1x4h_A RNA-binding protein 28; 99.5 9.6E-14 3.3E-18 109.8 7.9 77 5-90 13-101 (111)
241 1oo0_B CG8781-PA, drosophila Y 99.5 8.2E-14 2.8E-18 110.2 7.2 76 6-90 25-106 (110)
242 1u6f_A Tcubp1, RNA-binding pro 99.5 9.9E-14 3.4E-18 114.3 8.0 76 6-90 41-122 (139)
243 1x4e_A RNA binding motif, sing 99.5 2.9E-14 9.9E-19 107.4 4.2 75 5-88 3-83 (85)
244 2kt5_A RNA and export factor-b 99.5 1.3E-13 4.5E-18 111.5 8.4 78 5-91 33-115 (124)
245 2dnp_A RNA-binding protein 14; 99.5 9.3E-14 3.2E-18 105.9 6.9 72 6-90 8-81 (90)
246 2adc_A Polypyrimidine tract-bi 99.5 2.4E-13 8.2E-18 121.5 10.8 81 133-219 32-113 (229)
247 2mss_A Protein (musashi1); RNA 99.5 5.1E-14 1.7E-18 103.4 5.2 69 9-87 1-75 (75)
248 1wg5_A Heterogeneous nuclear r 99.5 2.4E-13 8.3E-18 106.6 9.3 77 135-218 15-96 (104)
249 3ucg_A Polyadenylate-binding p 99.5 1.2E-13 4.1E-18 104.7 7.2 74 7-90 6-85 (89)
250 3pgw_A U1-A; protein-RNA compl 99.5 4.9E-12 1.7E-16 116.0 19.4 80 133-218 7-92 (282)
251 1wf0_A TDP-43, TAR DNA-binding 99.4 8.3E-14 2.8E-18 105.7 6.1 74 134-217 4-79 (88)
252 2cpy_A RNA-binding protein 12; 99.4 1.4E-13 4.8E-18 109.8 7.6 79 134-219 14-97 (114)
253 2ek1_A RNA-binding protein 12; 99.4 4.8E-14 1.7E-18 108.3 4.6 75 6-89 14-94 (95)
254 2ki2_A SS-DNA binding protein 99.4 2.6E-14 8.8E-19 108.9 3.0 74 7-90 1-80 (90)
255 2db1_A Heterogeneous nuclear r 99.4 2.2E-13 7.5E-18 109.5 8.6 76 135-217 17-99 (118)
256 2cpx_A Hypothetical protein FL 99.4 1.1E-13 3.8E-18 110.2 6.8 76 6-90 24-105 (115)
257 2f3j_A RNA and export factor b 99.4 2.4E-13 8.2E-18 117.1 9.4 79 134-218 87-169 (177)
258 2dhg_A TRNA selenocysteine ass 99.4 1.1E-13 3.8E-18 108.2 6.6 77 5-90 7-90 (104)
259 2krb_A Eukaryotic translation 99.4 1.2E-13 4.2E-18 103.1 6.5 65 136-203 2-75 (81)
260 2e44_A Insulin-like growth fac 99.4 1.8E-13 6.1E-18 105.4 7.6 76 7-91 15-93 (96)
261 2fc8_A NCL protein; structure 99.4 3.4E-13 1.1E-17 105.0 9.1 75 134-217 14-93 (102)
262 2diu_A KIAA0430 protein; struc 99.4 2.7E-13 9.3E-18 103.5 8.3 66 10-90 12-84 (96)
263 3ex7_B RNA-binding protein 8A; 99.4 1.5E-13 5.1E-18 111.3 7.3 76 6-90 21-102 (126)
264 1wf1_A RNA-binding protein RAL 99.4 1.2E-13 4.3E-18 109.2 6.6 71 7-90 27-100 (110)
265 2cpe_A RNA-binding protein EWS 99.4 1.2E-13 4.1E-18 109.7 6.5 76 6-90 14-103 (113)
266 2krb_A Eukaryotic translation 99.4 5.7E-14 2E-18 104.9 4.3 69 8-85 2-81 (81)
267 1wez_A HnRNP H', FTP-3, hetero 99.4 2.9E-13 1E-17 105.9 8.5 75 135-217 15-93 (102)
268 3egn_A RNA-binding protein 40; 99.4 3.7E-13 1.3E-17 111.5 9.6 79 134-218 44-132 (143)
269 2cqh_A IGF-II mRNA-binding pro 99.4 8.5E-14 2.9E-18 106.7 5.2 74 5-90 6-83 (93)
270 2cqp_A RNA-binding protein 12; 99.4 7.9E-14 2.7E-18 107.8 5.1 76 6-90 14-95 (98)
271 1fj7_A Nucleolin RBD1, protein 99.4 6.8E-14 2.3E-18 108.9 4.6 76 135-217 17-96 (101)
272 2dit_A HIV TAT specific factor 99.4 5E-13 1.7E-17 106.3 9.7 79 133-217 13-103 (112)
273 1iqt_A AUF1, heterogeneous nuc 99.4 8.4E-14 2.9E-18 102.2 4.7 69 140-213 2-75 (75)
274 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.2E-13 7.4E-18 114.6 7.9 77 5-90 37-119 (156)
275 1s79_A Lupus LA protein; RRM, 99.4 2.1E-13 7.3E-18 107.0 7.3 74 6-89 10-88 (103)
276 2i2y_A Fusion protein consists 99.4 1.8E-13 6.3E-18 114.3 7.4 75 6-90 72-148 (150)
277 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.6E-13 8.7E-18 106.0 7.7 72 7-90 10-90 (100)
278 2cqd_A RNA-binding region cont 99.4 1.4E-13 4.8E-18 109.9 6.4 75 6-90 16-96 (116)
279 1qm9_A Polypyrimidine tract-bi 99.4 3.7E-13 1.3E-17 117.0 9.5 79 135-219 3-82 (198)
280 1x5o_A RNA binding motif, sing 99.4 3.6E-13 1.2E-17 107.1 8.6 84 6-90 24-112 (114)
281 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-13 4E-18 101.9 5.3 70 8-87 1-76 (77)
282 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.2E-13 4.3E-18 107.4 5.7 75 5-90 17-98 (100)
283 2cpd_A Apobec-1 stimulating pr 99.4 3E-13 1E-17 104.8 7.6 73 5-90 13-89 (99)
284 2nlw_A Eukaryotic translation 99.4 1.7E-13 5.8E-18 107.7 6.2 75 7-90 15-100 (105)
285 2hgl_A HNRPF protein, heteroge 99.4 2.7E-13 9.4E-18 111.8 7.6 77 135-218 44-127 (136)
286 2pe8_A Splicing factor 45; RRM 99.4 4.5E-13 1.6E-17 105.5 8.4 74 8-90 9-94 (105)
287 3n9u_C Cleavage and polyadenyl 99.4 2.1E-13 7.2E-18 115.1 6.9 75 8-91 56-138 (156)
288 2dh8_A DAZ-associated protein 99.4 1.8E-13 6E-18 107.3 6.0 75 6-90 15-95 (105)
289 1wg1_A KIAA1579 protein, homol 99.4 3E-13 1E-17 102.7 7.0 75 5-91 3-79 (88)
290 2cq4_A RNA binding motif prote 99.4 2E-13 6.8E-18 108.7 6.3 74 7-90 25-104 (114)
291 3u1l_A PRE-mRNA-splicing facto 99.4 3.8E-13 1.3E-17 121.0 8.8 78 133-217 132-230 (240)
292 1wel_A RNA-binding protein 12; 99.4 1E-13 3.6E-18 112.2 4.7 76 135-217 25-105 (124)
293 2lea_A Serine/arginine-rich sp 99.4 1.6E-13 5.6E-18 112.9 5.9 76 6-90 46-127 (135)
294 2dng_A Eukaryotic translation 99.4 3.1E-13 1.1E-17 105.6 7.0 74 6-90 14-93 (103)
295 1wi8_A EIF-4B, eukaryotic tran 99.4 3E-13 1E-17 105.9 6.9 74 6-90 14-94 (104)
296 1b7f_A Protein (SXL-lethal pro 99.4 6.1E-13 2.1E-17 112.0 9.3 77 135-217 3-84 (168)
297 1fxl_A Paraneoplastic encephal 99.4 8.9E-13 3E-17 110.7 10.2 77 135-217 2-83 (167)
298 2lcw_A RNA-binding protein FUS 99.1 2.2E-14 7.4E-19 114.8 0.0 78 134-217 6-96 (116)
299 2dis_A Unnamed protein product 99.4 2.5E-13 8.7E-18 107.0 6.2 76 6-90 7-92 (109)
300 2e5g_A U6 snRNA-specific termi 99.4 2.6E-13 8.9E-18 104.3 6.0 74 6-90 7-82 (94)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.5E-13 8.6E-18 111.7 6.3 73 6-87 62-140 (140)
302 2hzc_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 100.7 7.4 69 135-211 6-85 (87)
303 3s7r_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 101.4 6.8 72 6-87 10-87 (87)
304 2fc9_A NCL protein; structure 99.4 2E-13 6.8E-18 106.2 5.1 76 6-90 14-91 (101)
305 2dnn_A RNA-binding protein 12; 99.4 9E-13 3.1E-17 104.5 8.9 75 135-217 16-94 (109)
306 4f02_A Polyadenylate-binding p 99.4 8.4E-13 2.9E-17 116.6 9.7 78 134-217 14-96 (213)
307 2jwn_A Embryonic polyadenylate 99.4 3.1E-13 1.1E-17 109.1 6.3 74 7-90 36-115 (124)
308 2kn4_A Immunoglobulin G-bindin 99.4 3.7E-13 1.3E-17 113.2 6.8 76 6-90 69-150 (158)
309 1fjc_A Nucleolin RBD2, protein 99.4 2.1E-13 7E-18 105.1 4.8 76 5-90 14-91 (96)
310 2lmi_A GRSF-1, G-rich sequence 99.4 3.1E-13 1E-17 106.6 5.9 77 135-218 11-94 (107)
311 2rs2_A Musashi-1, RNA-binding 99.4 5E-13 1.7E-17 105.8 7.1 75 6-90 24-104 (109)
312 3v4m_A Splicing factor U2AF 65 99.4 7.1E-13 2.4E-17 104.4 7.9 78 134-217 4-98 (105)
313 2m2b_A RNA-binding protein 10; 99.4 1.5E-13 5.2E-18 112.4 3.7 75 6-90 22-108 (131)
314 2dit_A HIV TAT specific factor 99.4 6.5E-13 2.2E-17 105.6 7.2 63 19-90 40-102 (112)
315 1x4b_A Heterogeneous nuclear r 99.4 4.5E-13 1.6E-17 106.9 6.0 74 7-90 27-106 (116)
316 1wg5_A Heterogeneous nuclear r 99.4 8.5E-13 2.9E-17 103.5 7.3 77 6-92 14-96 (104)
317 3beg_B Splicing factor, argini 99.4 7E-13 2.4E-17 106.0 6.7 71 6-88 15-92 (115)
318 1fj7_A Nucleolin RBD1, protein 99.4 1.7E-13 6E-18 106.6 3.1 75 6-90 16-95 (101)
319 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.4E-12 1.2E-16 99.5 10.3 65 147-217 27-91 (100)
320 2xs2_A Deleted in azoospermia- 99.4 5.7E-13 2E-17 103.8 5.8 75 135-217 9-87 (102)
321 1rk8_A CG8781-PA, CG8781-PA pr 99.4 8.8E-13 3E-17 112.1 7.3 76 6-90 71-152 (165)
322 2cqg_A TDP-43, TAR DNA-binding 99.4 1.2E-12 4.1E-17 102.1 7.5 75 5-90 13-93 (103)
323 3md3_A Nuclear and cytoplasmic 99.4 1.5E-12 5.1E-17 109.2 8.6 74 140-217 3-80 (166)
324 2dgw_A Probable RNA-binding pr 99.4 9.1E-13 3.1E-17 100.4 6.6 74 6-90 9-87 (91)
325 3egn_A RNA-binding protein 40; 99.4 6.2E-13 2.1E-17 110.2 5.8 77 5-90 43-130 (143)
326 2fc8_A NCL protein; structure 99.3 1E-12 3.5E-17 102.3 6.3 76 6-90 14-92 (102)
327 2hgn_A Heterogeneous nuclear r 99.3 4.3E-13 1.5E-17 111.0 4.3 75 135-217 46-124 (139)
328 3q2s_C Cleavage and polyadenyl 99.3 7.1E-13 2.4E-17 118.8 6.0 75 7-90 68-150 (229)
329 3d2w_A TAR DNA-binding protein 99.3 1.3E-12 4.4E-17 99.6 6.6 73 6-90 10-84 (89)
330 1iqt_A AUF1, heterogeneous nuc 99.3 3.9E-13 1.3E-17 98.5 3.5 69 9-87 1-75 (75)
331 2f3j_A RNA and export factor b 99.3 1.4E-12 4.9E-17 112.3 7.6 77 5-90 86-167 (177)
332 2lcw_A RNA-binding protein FUS 99.0 1E-13 3.5E-18 110.8 0.0 77 5-90 5-95 (116)
333 2qfj_A FBP-interacting repress 99.3 2.9E-12 9.8E-17 112.5 9.0 77 135-217 28-109 (216)
334 2dha_A FLJ20171 protein; RRM d 99.3 7E-13 2.4E-17 107.4 4.6 77 135-218 23-107 (123)
335 3ue2_A Poly(U)-binding-splicin 99.3 3E-12 1E-16 102.9 8.2 78 134-217 19-110 (118)
336 2dnl_A Cytoplasmic polyadenyla 99.3 4.4E-12 1.5E-16 101.0 9.1 71 135-214 8-86 (114)
337 2db1_A Heterogeneous nuclear r 99.3 9E-13 3.1E-17 105.9 5.0 75 7-91 17-99 (118)
338 2hzc_A Splicing factor U2AF 65 99.3 1.6E-12 5.4E-17 98.0 6.0 70 5-86 4-86 (87)
339 3s6e_A RNA-binding protein 39; 99.3 6.1E-12 2.1E-16 100.5 9.7 80 134-219 6-96 (114)
340 1wez_A HnRNP H', FTP-3, hetero 99.3 1.8E-12 6.2E-17 101.4 6.5 73 7-90 15-92 (102)
341 3nmr_A Cugbp ELAV-like family 99.3 3.6E-12 1.2E-16 107.9 8.8 80 135-217 3-89 (175)
342 2cpy_A RNA-binding protein 12; 99.3 9.1E-13 3.1E-17 105.0 4.6 76 6-91 14-95 (114)
343 3u1l_A PRE-mRNA-splicing facto 99.3 2.1E-12 7.1E-17 116.1 7.4 81 5-90 132-229 (240)
344 1wel_A RNA-binding protein 12; 99.3 6.2E-13 2.1E-17 107.6 3.6 75 7-91 25-105 (124)
345 2hgl_A HNRPF protein, heteroge 99.3 1.3E-12 4.4E-17 107.7 5.0 75 7-91 44-126 (136)
346 3tht_A Alkylated DNA repair pr 99.3 3.3E-12 1.1E-16 120.6 8.2 78 133-214 16-97 (345)
347 3s6e_A RNA-binding protein 39; 99.3 2.7E-12 9.3E-17 102.5 6.4 64 19-91 31-94 (114)
348 3sde_A Paraspeckle component 1 99.3 1E-11 3.4E-16 113.2 10.4 77 134-217 21-97 (261)
349 2hgm_A HNRPF protein, heteroge 99.3 1.9E-12 6.6E-17 105.2 4.8 75 135-217 42-122 (126)
350 2lmi_A GRSF-1, G-rich sequence 99.3 1.5E-12 5.2E-17 102.5 4.0 76 6-91 10-93 (107)
351 3v4m_A Splicing factor U2AF 65 99.3 4.9E-12 1.7E-16 99.6 6.8 63 19-90 29-97 (105)
352 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.9E-17 102.4 3.2 68 142-213 20-103 (104)
353 1wf0_A TDP-43, TAR DNA-binding 99.3 3.4E-12 1.1E-16 96.7 5.2 73 6-90 4-78 (88)
354 3ue2_A Poly(U)-binding-splicin 99.3 8.2E-12 2.8E-16 100.3 7.6 63 19-90 39-109 (118)
355 1l3k_A Heterogeneous nuclear r 99.3 1E-11 3.4E-16 107.3 8.6 77 134-217 12-93 (196)
356 1jmt_A Splicing factor U2AF 35 99.3 5.1E-12 1.7E-16 99.3 6.1 59 20-87 41-103 (104)
357 2xs2_A Deleted in azoospermia- 99.3 2.4E-12 8.1E-17 100.2 4.1 74 6-90 8-86 (102)
358 2j8a_A Histone-lysine N-methyl 99.3 6.8E-12 2.3E-16 101.2 6.7 73 140-216 5-96 (136)
359 2dnn_A RNA-binding protein 12; 99.3 7.2E-12 2.5E-16 99.3 6.8 72 8-90 17-93 (109)
360 2hgn_A Heterogeneous nuclear r 99.3 2.9E-12 1E-16 105.9 4.3 74 7-91 46-124 (139)
361 2voo_A Lupus LA protein; RNA-b 99.2 1.7E-11 5.7E-16 107.0 7.4 75 135-216 109-187 (193)
362 1fje_B Nucleolin RBD12, protei 99.2 1.2E-11 4.2E-16 105.0 6.3 75 6-90 98-174 (175)
363 3tht_A Alkylated DNA repair pr 99.2 1.7E-11 5.7E-16 115.9 7.4 77 4-88 15-97 (345)
364 2g4b_A Splicing factor U2AF 65 99.2 2.9E-11 9.8E-16 102.2 8.1 74 135-216 4-88 (172)
365 3pgw_S U1-70K; protein-RNA com 99.2 2E-11 6.7E-16 119.4 7.8 76 6-90 101-182 (437)
366 2dnl_A Cytoplasmic polyadenyla 99.2 2.7E-11 9.2E-16 96.4 6.7 60 5-65 6-74 (114)
367 2dha_A FLJ20171 protein; RRM d 99.2 8.1E-12 2.8E-16 101.1 3.5 76 6-91 22-106 (123)
368 2yh0_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 103.4 8.4 75 135-217 4-89 (198)
369 2hgm_A HNRPF protein, heteroge 99.2 1.2E-11 4.1E-16 100.5 4.0 74 7-91 42-122 (126)
370 2cjk_A Nuclear polyadenylated 99.2 3.7E-11 1.3E-15 101.0 7.2 74 135-216 3-81 (167)
371 2voo_A Lupus LA protein; RNA-b 99.1 1E-10 3.4E-15 102.0 6.7 72 8-89 110-186 (193)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 4.3E-10 1.5E-14 85.0 9.2 76 133-216 5-86 (91)
373 2j8a_A Histone-lysine N-methyl 99.1 4.7E-11 1.6E-15 96.4 4.1 74 9-91 4-97 (136)
374 1owx_A Lupus LA protein, SS-B, 99.0 2E-09 6.8E-14 86.4 9.9 74 133-213 16-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 1.5E-09 5.2E-14 82.1 5.9 57 20-90 30-86 (91)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 4.5E-09 1.5E-13 79.9 7.2 73 132-212 12-91 (95)
377 2l9w_A U4/U6 snRNA-associated- 98.8 1.9E-08 6.4E-13 78.0 8.4 71 135-212 21-96 (117)
378 3dxb_A Thioredoxin N-terminall 98.7 2E-08 7E-13 88.8 8.5 63 19-90 143-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 1.1E-08 3.6E-13 77.8 4.6 54 20-87 39-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.6 3.5E-08 1.2E-12 87.3 6.8 65 149-217 141-214 (222)
381 1owx_A Lupus LA protein, SS-B, 98.5 3E-07 1E-11 73.7 8.1 74 6-88 17-94 (121)
382 2l9w_A U4/U6 snRNA-associated- 97.9 1.5E-05 5.1E-10 61.8 5.3 64 11-86 28-96 (117)
383 1wey_A Calcipressin 1; structu 97.8 3.7E-05 1.3E-09 59.3 6.7 74 137-217 7-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.3 0.0011 3.7E-08 50.9 8.3 67 135-211 8-79 (104)
385 1wwh_A Nucleoporin 35, nucleop 97.3 0.00093 3.2E-08 52.8 7.8 61 139-203 26-86 (119)
386 1wey_A Calcipressin 1; structu 97.1 0.00069 2.4E-08 52.2 5.6 61 20-91 25-85 (104)
387 1uw4_A UPF3X; nonsense mediate 96.7 0.012 4E-07 44.3 9.2 75 140-214 4-86 (91)
388 1whv_A Poly(A)-specific ribonu 96.6 0.0075 2.6E-07 45.7 7.3 55 135-196 16-70 (100)
389 3pq1_A Poly(A) RNA polymerase; 96.4 0.0021 7.3E-08 62.6 4.0 54 136-193 54-107 (464)
390 3ctr_A Poly(A)-specific ribonu 96.3 0.0076 2.6E-07 45.8 6.0 51 144-198 12-62 (101)
391 1whv_A Poly(A)-specific ribonu 96.1 0.0075 2.5E-07 45.7 4.8 42 19-64 29-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 95.8 0.013 4.6E-07 46.1 5.6 53 13-68 31-83 (119)
393 3ctr_A Poly(A)-specific ribonu 95.7 0.0074 2.5E-07 45.9 3.4 42 19-64 19-60 (101)
394 3p3d_A Nucleoporin 53; structu 95.3 0.0093 3.2E-07 47.8 2.8 69 140-214 10-97 (132)
395 3pq1_A Poly(A) RNA polymerase; 95.3 0.0069 2.3E-07 59.0 2.4 42 19-61 66-107 (464)
396 2l08_A Regulator of nonsense t 94.5 0.069 2.3E-06 40.5 5.8 74 140-214 12-94 (97)
397 2dhx_A Poly (ADP-ribose) polym 93.6 0.12 4E-06 39.6 5.4 63 10-86 11-80 (104)
398 3p3d_A Nucleoporin 53; structu 89.6 0.18 6.2E-06 40.3 2.6 66 13-88 14-97 (132)
399 1uw4_A UPF3X; nonsense mediate 88.6 0.84 2.9E-05 34.0 5.5 58 11-68 5-70 (91)
400 3d45_A Poly(A)-specific ribonu 85.3 2.2 7.5E-05 41.9 8.1 57 135-198 440-496 (507)
401 3d45_A Poly(A)-specific ribonu 73.0 6 0.0002 38.8 6.6 44 19-66 453-496 (507)
402 2f06_A Conserved hypothetical 68.0 41 0.0014 26.2 12.5 51 149-201 84-136 (144)
403 2g0c_A ATP-dependent RNA helic 63.9 20 0.00067 24.9 6.2 68 138-214 3-75 (76)
404 2l08_A Regulator of nonsense t 57.2 10 0.00035 28.4 3.7 57 12-68 14-78 (97)
405 4eyt_A Telomerase associated p 31.8 1.5E+02 0.0051 21.7 7.1 68 4-86 9-78 (129)
406 3ts2_A Protein LIN-28 homolog 31.8 11 0.00037 30.5 0.2 30 19-52 1-30 (148)
407 2e5p_A Protein PHF1, PHD finge 30.5 26 0.00088 24.2 1.9 20 162-185 28-47 (68)
408 3j21_T 50S ribosomal protein L 28.6 1.5E+02 0.0051 21.4 6.0 50 144-193 29-81 (86)
409 2eqj_A Metal-response element- 26.8 32 0.0011 23.7 1.9 13 172-185 39-51 (66)
410 2m0o_A PHD finger protein 1; t 25.2 33 0.0011 24.3 1.8 21 30-54 45-65 (79)
411 4bby_A Alkyldihydroxyacetoneph 24.4 61 0.0021 32.5 4.3 46 21-66 359-411 (658)
412 1wvf_A 4-cresol dehydrogenase 22.5 59 0.002 31.6 3.7 41 21-61 217-262 (520)
413 2e5q_A PHD finger protein 19; 22.3 25 0.00085 23.9 0.6 9 177-185 37-45 (63)
414 4hcz_A PHD finger protein 1; p 21.0 51 0.0017 22.1 1.9 9 177-185 33-41 (58)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.4e-30 Score=230.20 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=136.0
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.|++.|||++++.+ |++|+++|++||+|.+|++++ +.+++||||+|.+.++|.+|++.+|+..+ .
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---------~ 83 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---------K 83 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---------C
Confidence 36788999999854 999999999999999999886 23567899999999999999999999884 6
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|+.|++.++........ .....|+ |+||+..+|+++|+++|
T Consensus 84 g~~i~~~~~~~~~~~~~-------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 84 GKPVRIMWSQRDPSLRK-------------------------------------SGVGNIF--IKNLDKSIDNKALYDTF 124 (213)
T ss_dssp TEECEEEECCCCTHHHH-------------------------------------HCTTEEE--EESCCTTCCHHHHHHHH
T ss_pred Ccccccccccccccccc-------------------------------------cccccce--ECCcccccHHHHHHHHH
Confidence 99999998875422110 0134555 89999999999999999
Q ss_pred cccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 159 SAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+.||.|++|+|+.+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++++.
T Consensus 125 ~~~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~~a~~~~ 182 (213)
T 4f02_A 125 SAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSRK 182 (213)
T ss_dssp GGGSCEEEEEEEEETTEEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCCHH
T ss_pred hhcCCeEEEEeeccCCCCceE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEcCCCc
Confidence 999999999987543 455 99999999999999999999999998 99999998754
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=5.4e-29 Score=210.94 Aligned_cols=155 Identities=16% Similarity=0.275 Sum_probs=132.0
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.++|||++++.+ |++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++.|||..+ .|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---------QTK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---------CCc
Confidence 567899999854 9999999999999999988763 2347899999999999999999999885 699
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
+|+|.+++...... .+..|+ |.||+..+|+++|+++|++
T Consensus 73 ~l~v~~~~~~~~~~---------------------------------------~~~~l~--v~nl~~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 73 TIKVSYARPSSASI---------------------------------------RDANLY--VSGLPKTMTQKELEQLFSQ 111 (167)
T ss_dssp ECEEEECCCCCGGG---------------------------------------TTCEEE--EESCCTTCCHHHHHHHHGG
T ss_pred eEEEEecCCCcccC---------------------------------------CCCcEE--ECCCCCcCCHHHHHHHHHh
Confidence 99999987542111 244555 8999999999999999999
Q ss_pred cCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 161 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 161 fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
||.|.++++.... +|+ |||+|.+.++|.+|++.|||..+.|+ ...|+|+||
T Consensus 112 ~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 112 YGRIITSRILVDQVTGVSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp GSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred cCCEeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 9999999987643 455 99999999999999999999999987 446999886
No 3
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.5e-28 Score=227.01 Aligned_cols=197 Identities=19% Similarity=0.301 Sum_probs=141.3
Q ss_pred ccccccccCCCCCCC--HHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 4 IWPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
..+..+|||++++.+ |++|+ ++|++||+|.+|++++ +..++||||+|.+.++|.+|++.|||..|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-------- 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF-------- 77 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee--------
Confidence 467889999999854 88866 8999999999998876 44667899999999999999999999885
Q ss_pred CCCceEEEeeccCCccccc-ccCc---CCc--------CCC----CCCCCCCC-----CccCc-----------------
Q 019494 77 MGPCTLRITYSAHTDLSVK-FQSH---RSR--------DYT----NPYLPVAP-----SAIDA----------------- 118 (340)
Q Consensus 77 ~~~~~l~v~~s~~~~l~~~-~~~~---~~~--------~~~----~~~~~~~~-----~~~~~----------------- 118 (340)
.|+.|+|+|++.+..... .... +.. ... ........ ....+
T Consensus 78 -~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 78 -YDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred -CCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 699999999975432110 0000 000 000 00000000 00000
Q ss_pred ----------------CCCcccc------------------CCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCe
Q 019494 119 ----------------SGQLSVG------------------LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 164 (340)
Q Consensus 119 ----------------~~~~~~~------------------~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v 164 (340)
.+..... .......+++++|+ |.||+..+|+++|+++|++||.|
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF--LTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE--EeCCCCcCCHHHHHHHHHhcCCe
Confidence 0000000 00001223466777 89999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecC
Q 019494 165 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH 215 (340)
Q Consensus 165 ~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~ 215 (340)
++|++..+++|+ |||+|.+.++|.+|++.|||..|. |+ .|+|+|+|.
T Consensus 235 ~~v~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk 282 (282)
T 3pgw_A 235 KEVRLVPGRHDI-AFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK 282 (282)
T ss_pred EEEEEecCCCcE-EEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence 999999877675 999999999999999999999999 77 999999873
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=5.7e-29 Score=211.45 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=132.8
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+.++|||++++.+ |++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++.|+|..+ .|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g 72 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---------RN 72 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---------CC
Confidence 4678999999854 8999999999999999988763 2456899999999999999999999884 69
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
++|+|.+++..... ..+.+|+ |.||+..+|+++|+++|+
T Consensus 73 ~~l~v~~~~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f~ 111 (168)
T 1b7f_A 73 KRLKVSYARPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIFG 111 (168)
T ss_dssp EECEEEECCCCSST---------------------------------------TTTCEEE--EESCCTTCCHHHHHHHHT
T ss_pred cEEEEEecCCCccc---------------------------------------CCCCCEE--EeCCCCCCCHHHHHHhhh
Confidence 99999998754211 1245666 899999999999999999
Q ss_pred ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+||.|++|++...+ +|+ |||+|.+.++|.+|++.|||..+.|+ .+.|+|+||
T Consensus 112 ~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 112 KYGSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp SSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred cCCcEEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence 99999999987644 354 99999999999999999999999883 349999986
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=7.7e-29 Score=219.65 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=136.4
Q ss_pred ccccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 6 PLSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 6 ~~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+.+.|||+|++ .+|++|+++|++||+|.+|++++. ++++|||+|.+.++|++|++.|||..+ .|++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFM---------FGQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEE---------CCceE
Confidence 45678999998 358999999999999999999864 356899999999999999999999985 59999
Q ss_pred EEeeccCCccccccc---Cc---CCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHH
Q 019494 83 RITYSAHTDLSVKFQ---SH---RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 156 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~ 156 (340)
+|.+|+.+....+.. .. ..+++.+..... .... .........+++++|+ |.||++++|+++|++
T Consensus 73 ~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r-------~~~~-~~~~~~~~~~p~~~l~--v~NLp~~~t~~~L~~ 142 (205)
T 3tyt_A 73 NVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNR-------FSTP-EQAAKNRIQHPSNVLH--FFNAPLEVTEENFFE 142 (205)
T ss_dssp EEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCS-------CSSH-HHHTTSCCCCCCSEEE--EEEECTTCCHHHHHH
T ss_pred EEEEccCCccCCCcccccccCCccccccCCCcccc-------ccCc-ccccccccCCCcceEE--EeCCCCCCCHHHHHH
Confidence 999998654311100 00 001111100000 0000 0000011234677877 889999999999999
Q ss_pred HHcccCCe--eEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCC-ccEEEEEee
Q 019494 157 VFSAFGPV--QKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS 213 (340)
Q Consensus 157 ~F~~fG~v--~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~-~~~l~v~~a 213 (340)
+|+.||.| ++|+++..+ +|+ |||+|++.++|.+|++.|||+.|.+.+ ..++.|.|+
T Consensus 143 ~F~~~G~v~~~~v~~~~~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 143 ICDELGVKRPTSVKVFSGKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHTCCCCSEEEECSCCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHhcCCcceEEEEEEcCCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999999 899988653 355 999999999999999999999998873 335666554
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.5e-28 Score=219.53 Aligned_cols=187 Identities=26% Similarity=0.314 Sum_probs=141.5
Q ss_pred ccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 6 PLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 6 ~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++.. ++||||+|.+.++|++|++.|||..| .|++|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g~~l 102 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPI 102 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBC---------SSSBC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence 567899999876 499999999999999999998754 56799999999999999999999884 69999
Q ss_pred EEeeccCCcccccccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 83 RITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
+|.+++.......... ....++........ .... ........+++++|+ |.||+..+|+++|+++|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~--V~nlp~~~t~~~l~~~f 172 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF-------KKPG-SKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLF 172 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCC-------CSTT-SGGGTTCCCSCSEEE--EECCCTTCCHHHHHHHH
T ss_pred EEEEecCccccCccccccccccccccccCccccc-------CCcc-ccccccCCCCCCEEE--EeCCCccCCHHHHHHHH
Confidence 9999985532221100 00111111000000 0000 000011124567777 88999999999999999
Q ss_pred cccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecCC
Q 019494 159 SAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 216 (340)
Q Consensus 159 ~~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~~ 216 (340)
+.|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|++++
T Consensus 173 ~~~G~~i~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~~ 228 (229)
T 2adc_A 173 SSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 228 (229)
T ss_dssp HTTSCCEEEEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSSC
T ss_pred HHcCCCeeEEEEEECCCcE-EEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecCC
Confidence 9999 99999997766786 999999999999999999999998 77 9999999864
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=208.22 Aligned_cols=155 Identities=16% Similarity=0.231 Sum_probs=131.5
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+|||++++.+ |++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++.|||..+ .|+.|+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI---------ENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---------CCCeeE
Confidence 5788888754 8999999999999999998762 3567899999999999999999999985 699999
Q ss_pred EeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCC
Q 019494 84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 163 (340)
Q Consensus 84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~ 163 (340)
|.++....... ..++.+|+ |.||+..+|+++|+++|+.||.
T Consensus 73 v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 73 INWAFQSQQSS-------------------------------------SDDTFNLF--VGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp EEECCCCCCCC-------------------------------------CTTCEEEE--EESCCTTCCHHHHHHHHTTSTT
T ss_pred EEEcCCCCCCC-------------------------------------CCCCceEE--ECCCCCCCCHHHHHHHHhccCC
Confidence 99987542110 11245566 8999999999999999999999
Q ss_pred eeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 164 VQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 164 v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
|.++.+.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||+.
T Consensus 114 i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~ 166 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAAK 166 (166)
T ss_dssp EEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESCC
T ss_pred eeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCc---EEEEEecCC
Confidence 9999987542 354 99999999999999999999999998 999999863
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=8.4e-29 Score=219.08 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=136.1
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||++++.+ |++|+++|+.||+|.+|.+++ +..+++|||+|.+.++|.+|++.|||..| .
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~ 96 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---------G 96 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---------C
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---------C
Confidence 45678999999854 999999999999999999875 23577899999999999999999999884 6
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|+.|+|.++.............. .....+++|+ |.||+..+|+++|+++|
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~l~--v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLA----------------------------EEARAFNRIY--VASVHQDLSDDDIKSVF 146 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHH----------------------------HHHTTSCEEE--EECCCTTCCHHHHHHHH
T ss_pred CeeEEEecCCCccccchhhhhhh----------------------------cccCCCcEEE--EeCCCCcCCHHHHHHHH
Confidence 99999988764421100000000 0001245666 89999999999999999
Q ss_pred cccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 159 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+.||.|++|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++...
T Consensus 147 ~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~---~i~V~~a~~~~ 206 (216)
T 2qfj_A 147 EAFGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQDAVSSMNLFDLGGQ---YLRVGKAVTPP 206 (216)
T ss_dssp TTSSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBCSSS---BCEEEECSSCS
T ss_pred hccCCeeEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHHccCCEeCCc---EEEEEEecCCC
Confidence 999999999987642 455 99999999999999999999999998 99999988764
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=4.5e-28 Score=207.07 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=131.0
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
..+|||++++.+ |++|+++|++||+|.+|.+++. .+++||||+|.+.++|++|++.|||..+.. ..
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~------~~ 76 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP------GM 76 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT------TC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc------CC
Confidence 467899999854 8999999999999999988863 345789999999999999999999988631 23
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
++.+++.+++..... ...+++|+ |.||+..+|+++|+++|
T Consensus 77 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 77 HHPIQMKPADSEKNN--------------------------------------AVEDRKLF--IGMISKKCTENDIRVMF 116 (175)
T ss_dssp SSCCEEEECGGGCCS--------------------------------------CGGGSEEE--EESCCTTCCHHHHHHHH
T ss_pred ccceEEccccccccc--------------------------------------cCCCCeEE--EcCCCCcCCHHHHHHHH
Confidence 577777776643211 01245566 89999999999999999
Q ss_pred cccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 159 SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
++||.|++|++.... +|+ |||+|.+.++|.+|++.|||..+.+++.+.|+|+||.
T Consensus 117 ~~~G~i~~v~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 117 SSFGQIEECRILRGPDGLSRGC-AFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GGGSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HhCCCEEEEEEEECCCCCEEEE-EEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999987653 344 9999999999999999999998876322499999974
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.3e-28 Score=212.32 Aligned_cols=186 Identities=26% Similarity=0.316 Sum_probs=140.7
Q ss_pred cccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
..+|||++++. +|++|+++|+.||+|.+|.+++.. +++|||+|.+.++|.+|++.|||..+ .|++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~l~ 72 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPIR 72 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCC---------SSCCCE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCee---------cCeEEE
Confidence 46789999876 499999999999999999988644 45799999999999999999999884 699999
Q ss_pred EeeccCCcccccccC----cCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 84 ITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 84 v~~s~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
|.+++.......... ....++..... ...... .........+++++|+ |.||+..+|+++|+++|+
T Consensus 73 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~r~~~~-~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~ 142 (198)
T 1qm9_A 73 ITLSKHQNVQLPREGQEDQGLTKDYGNSPL-------HRFKKP-GSKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLFS 142 (198)
T ss_dssp EEECCCCSCCCSSSSSSSSSCEEESSCCCT-------TSSSSC-CCCCCSCCCCCCCEEE--ECCCCTTCCHHHHHHHHH
T ss_pred EEEecCCCcCCCCcCCccccccccccCCch-------hhccCc-cccccccCCCCccEEE--EeCCCCCCCHHHHHHHHH
Confidence 999986532221100 00111111000 000000 0000011234577777 899999999999999999
Q ss_pred ccC-CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC-CCCccEEEEEeecCC
Q 019494 160 AFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 216 (340)
Q Consensus 160 ~fG-~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~-~~~~~~l~v~~ak~~ 216 (340)
+|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|++++
T Consensus 143 ~~G~~v~~v~i~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~ 197 (198)
T 1qm9_A 143 SNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 197 (198)
T ss_dssp HTTSCCCEEEESSTTSSC-EEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred HcCCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence 999 99999998767786 999999999999999999999998 77 9999999864
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=8.6e-28 Score=205.10 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=130.6
Q ss_pred ccccccccCCCCCCC--HHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494 4 IWPLSRKYLQWQLSA--SGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 70 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~ 70 (340)
+++..+|||++++.+ |++|+++|++| | .|.++.+.+ ++++|||+|.+.++|.+|+ .|||..+
T Consensus 1 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~-- 75 (172)
T 2g4b_A 1 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF-- 75 (172)
T ss_dssp CCGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEE--
T ss_pred CCcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEe--
Confidence 578899999999854 99999999999 6 677776654 5678999999999999999 8999884
Q ss_pred cCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCC
Q 019494 71 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVT 150 (340)
Q Consensus 71 ~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt 150 (340)
.|++|+|.+++..... ..+.+|+ |+||+..+|
T Consensus 76 -------~g~~i~v~~~~~~~~~---------------------------------------~~~~~l~--v~nlp~~~t 107 (172)
T 2g4b_A 76 -------QGQSLKIRRPHDYQPL---------------------------------------PGAHKLF--IGGLPNYLN 107 (172)
T ss_dssp -------TTEECEEECCSSCCCC---------------------------------------TTTTCEE--EECCCTTCC
T ss_pred -------cCceeeecCCcccCCC---------------------------------------CCCCEEE--EEcCCCcCC
Confidence 6999999987643210 1144555 899999999
Q ss_pred HHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 151 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 151 ~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+++|+++|++||.|..|++...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||
T Consensus 108 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~A 171 (172)
T 2g4b_A 108 DDQVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRA 171 (172)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEESSTTHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCEECCe---EEEEEeC
Confidence 99999999999999999987653 455 99999999999999999999999998 9999987
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=3.1e-27 Score=205.86 Aligned_cols=164 Identities=10% Similarity=0.137 Sum_probs=129.1
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |++|+++|+.||+|.+|.+++. .+++||||+|.+.++|.+|++. ++.. +.|
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~---------~~g 81 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK---------VDG 81 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE---------ETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE---------ECC
Confidence 4678999999854 9999999999999999988762 2467899999999999999975 7776 469
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHc
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 159 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~ 159 (340)
+.|+|.++......... ......++|+ |.||+..+|+++|+++|+
T Consensus 82 ~~l~v~~~~~~~~~~~~---------------------------------~~~~~~~~l~--V~nLp~~~t~~~l~~~F~ 126 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQRP---------------------------------GAHLTVKKIF--VGGIKEDTEEHHLRDYFE 126 (196)
T ss_dssp EECEEEECCC--------------------------------------------CCSEEE--EECCTTTCCHHHHHHHHT
T ss_pred EEeeeecccCccccccc---------------------------------ccCCCcceEE--EeCCCCCCCHHHHHHHHh
Confidence 99999998754211100 0011245666 899999999999999999
Q ss_pred ccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCCc
Q 019494 160 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 219 (340)
Q Consensus 160 ~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~~ 219 (340)
.||.|++|++.... +|+ |||+|.+.++|.+|++. +|..|.|+ .|+|.|+.++...
T Consensus 127 ~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~-~~~~~~G~---~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 127 QYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVIQ-KYHTVNGH---NCEVRKALSKQEM 186 (196)
T ss_dssp TTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHC-SCCEETTE---ECEEEECC-----
T ss_pred cCCCeEEEEEeecCCCCCccce-EEEEECCHHHHHHHHHh-CCcEECCE---EEEEEecCChhHh
Confidence 99999999987542 455 99999999999999987 89999998 9999999876543
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=6.9e-27 Score=203.97 Aligned_cols=175 Identities=19% Similarity=0.236 Sum_probs=133.1
Q ss_pred ccccccCCCCCCC--HHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 72 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~ 72 (340)
...+|||++++.+ |++|+++|+.| | .|.++.+. .+++||||+|.+.++|++|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~---- 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIF---- 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEE----
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEE----
Confidence 5678999999854 99999999999 4 55666553 35678999999999999999 8999884
Q ss_pred CCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHH
Q 019494 73 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD 152 (340)
Q Consensus 73 ~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~ 152 (340)
.|++|+|.+++............... .+ +.........+++|+ |.||+..+|++
T Consensus 76 -----~g~~i~v~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~l~--v~nl~~~~~~~ 129 (198)
T 2yh0_A 76 -----QGQSLKIRRPHDYQPLPGMSENPSVY--VP-----------------GVVSTVVPDSAHKLF--IGGLPNYLNDD 129 (198)
T ss_dssp -----TTEEEEEECCCCCCCCCCSSSCSSCC--CT-----------------TSSCCCSSCCCCEEE--EECCCTTCCHH
T ss_pred -----cCceEEEeCCCCCCCCCCCcCCCcCC--CC-----------------CCccCCCCCCCCEEE--EeCCCCCCCHH
Confidence 69999999987542211100000000 00 000011112456666 88999999999
Q ss_pred HHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 153 VLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 153 ~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
+|+++|++||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+++..
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEE-EEEEESSSSHHHHHHHHHTTCEETTE---ECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCCC
Confidence 999999999999999987653 455 99999999999999999999999998 99999998754
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.2e-27 Score=203.28 Aligned_cols=155 Identities=9% Similarity=0.122 Sum_probs=129.6
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
++..+|||++++.+ |++|+++|+.||+|.+|.+++ +.+++||||+|.+.++|.+|++. +.. +.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~---------~~ 69 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI---------LD 69 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE---------ET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc---------cC
Confidence 46789999999854 999999999999999999876 23567899999999999999984 444 46
Q ss_pred CceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHH
Q 019494 79 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 158 (340)
Q Consensus 79 ~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F 158 (340)
|+.|+|.++..+.... .+.+|+ |+||+..+|+++|+++|
T Consensus 70 g~~i~v~~~~~~~~~~---------------------------------------~~~~l~--V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 70 GKVIDPKRAIPRDEQD---------------------------------------KTGKIF--VGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp TEECCCEECCCHHHHH---------------------------------------HCEEEE--EEEECTTCCHHHHHHHH
T ss_pred CeEcccccccchhhcc---------------------------------------CCCeEE--ECCCCCCCCHHHHHHHH
Confidence 8888888876432110 134555 89999999999999999
Q ss_pred cccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 159 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+.||.|++|++...+ +|+ |||+|.+.++|.+|++ ++|..|.|+ .|+|.|++++
T Consensus 109 ~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i~V~~a~pk 166 (167)
T 2cjk_A 109 SQWGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAVDRVCQ-NKFIDFKDR---KIEIKRAEPR 166 (167)
T ss_dssp HTTSCCSEEECCCSSSSSTTSEE-EEEEESSHHHHHHHHH-CSEECSSSS---CEEEEECCCC
T ss_pred HhCccEEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHh-CCCEEeCCe---EEEEeecCCC
Confidence 999999999987542 465 9999999999999998 899999999 9999999865
No 15
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.94 E-value=3.3e-27 Score=193.24 Aligned_cols=108 Identities=49% Similarity=0.755 Sum_probs=100.1
Q ss_pred CCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 131 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 131 ~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
...++++|+|+|+||++.+|+++|+++|++||+|.+|+|+.+++|++|||+|.+.++|.+|++.|||..|+++ ||.|+|
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI 100 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 100 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEE
Confidence 3457999999999999999999999999999999999999887888899999999999999999999999996 889999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCCC
Q 019494 211 SYSRHTDLSIKVNNDRSRDYTLPSTPMVN 239 (340)
Q Consensus 211 ~~ak~~~~~~~~~~~~~~d~~~p~~p~~~ 239 (340)
+|||++++++++|++++||||+|.+|.++
T Consensus 101 ~~ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 101 DFSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp EECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred EecCCCceeEEecCCCcccCCCCCCCCCC
Confidence 99999999999999999999999987653
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.6e-27 Score=204.31 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=128.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||++++.+ |++|+++|+.||.|..+.+.. +.+++||||+|.+.++|.+|+ .|||..| .|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---------FGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---------TTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---------CCe
Confidence 4678999999854 899999999999876632222 446779999999999999999 5999885 699
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
+|+|.+++.+.... ...+++|+ |.||+..+|+++|+++|+.
T Consensus 82 ~l~v~~~~~~~~~~-------------------------------------~~~~~~l~--v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRDSKK-------------------------------------VRAARTLL--AKNLSFNITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSSCST-------------------------------------TGGGGEEE--EESCCSSCCHHHHHHHCTT
T ss_pred EEEEecCCCccccc-------------------------------------cccCCEEE--EeCCCCCCCHHHHHHHHHh
Confidence 99999987542110 01255666 8999999999999999999
Q ss_pred cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 161 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 161 fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
||.|..+......+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++++
T Consensus 123 ~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~k 174 (175)
T 1fje_B 123 ALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTGEK 174 (175)
T ss_dssp CSEEEEECSSSSCCSE-EEEECSSHHHHHHHHHHHTEEEETTE---EEEEEECSSC
T ss_pred cCeEEEecCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEecCCC
Confidence 9998877111234575 99999999999999999999999998 9999999864
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=6.3e-26 Score=209.54 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=135.5
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++.+ |++|+++|+.||.|.+|.++.. .++++|||+|.+.++|.+|++.|||..| .|+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~ 165 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---------GPR 165 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CCc
Confidence 356899888854 8999999999999999988752 3467899999999999999999999884 699
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCC-CHHHHHHHHc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV-TLDVLHMVFS 159 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~v-t~~~L~~~F~ 159 (340)
+|+|.++..+..... ...+++|+ |.||+..+ |+++|+++|+
T Consensus 166 ~i~v~~a~~~~~~~~------------------------------------~~~~~~l~--v~nlp~~~~~~~~l~~~f~ 207 (284)
T 3smz_A 166 TLYVHWTDAGQLTPA------------------------------------LLHSRCLC--VDRLPPGFNDVDALCRALS 207 (284)
T ss_dssp ECEEEECCGGGCCTT------------------------------------TTSCSEEE--EECCCTTCCCHHHHHHHTC
T ss_pred EEEEEECCCCCCCcc------------------------------------cCCccEEE--EecCCcccCCHHHHHHHhh
Confidence 999999875532110 11255666 89999996 9999999999
Q ss_pred ccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494 160 AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 160 ~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+++...
T Consensus 208 ~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~~~~~ 266 (284)
T 3smz_A 208 AVHSPTFCQLACGQDGQLKGF-AVLEYETAEMAEEAQQQADGLSLGGS---HLRVSFCAPGPP 266 (284)
T ss_dssp SSSCCSEEEEEECSSCCEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCSSSC
T ss_pred CCCCeEEEEEEECCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCe---EEEEEEecCCCc
Confidence 99999999987642 354 99999999999999999999999998 999999987764
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2e-25 Score=204.52 Aligned_cols=151 Identities=20% Similarity=0.300 Sum_probs=128.7
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+.++|||++++. +|++|+++|+.||+|.+|.+.+ +++||||+|.+.++|.+|+..|||..| .|+.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i---------~g~~l 88 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTIL---------KSRPL 88 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEE---------CCcee
Confidence 3456899999984 4999999999999999999865 467899999999999999999999985 69999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|.++.. +.+|+ |.||+..+|+++|+++|+.||
T Consensus 89 ~v~~a~~---------------------------------------------~~~l~--v~nl~~~~t~~~l~~~F~~~G 121 (261)
T 3sde_A 89 RIRFATH---------------------------------------------GAALT--VKNLSPVVSNELLEQAFSQFG 121 (261)
T ss_dssp EEEECCC---------------------------------------------SSEEE--EESCCTTCCHHHHHHHHGGGS
T ss_pred Eeeeccc---------------------------------------------CCccc--ccCCCCCCCHHHHHHHHHhcC
Confidence 9998763 23455 899999999999999999999
Q ss_pred CeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhc-CCeeC---CCCccEEEEEeecCCC
Q 019494 163 PVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALE-GHCIY---DGGFCKLHISYSRHTD 217 (340)
Q Consensus 163 ~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~ln-g~~i~---~~~~~~l~v~~ak~~~ 217 (340)
.|++|+|..+. +|+ |||+|.+.++|.+|++.|| +..+. ++ .|.|.+++...
T Consensus 122 ~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~r---~i~v~~~~~~~ 180 (261)
T 3sde_A 122 PVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERCGDGAFLLTTTPR---PVIVEPMEQFD 180 (261)
T ss_dssp CEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHHHHSCEESSSSCC---BCEEEECCCEE
T ss_pred CeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHhcCCeEEecCCCc---eEEEeeccccC
Confidence 99999987543 355 9999999999999999995 44544 55 99999987653
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=4.9e-25 Score=203.55 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=130.7
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+..+|||++++.+ |+||+++|+.|| |.++.+ ..++++|||+|.+.++|.+|++.|||..+ .|++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g~~i 87 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRL---------REREL 87 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCee---------CCeEE
Confidence 35678999999854 899999999999 999887 34567899999999999999999999985 69999
Q ss_pred EEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccC
Q 019494 83 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 162 (340)
Q Consensus 83 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG 162 (340)
+|+++.. +.+|+ |+||+..+|+++|+++|+.||
T Consensus 88 ~v~~~~~---------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 88 SVQLQPT---------------------------------------------DALLC--VANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp EEEECCC---------------------------------------------SCEEE--EESCCTTCCHHHHHHHHGGGS
T ss_pred EEEecCC---------------------------------------------CCEEE--EcCCCCcCCHHHHHHHHHhcC
Confidence 9997442 23455 899999999999999999999
Q ss_pred CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCCC
Q 019494 163 PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 163 ~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
.|..|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|++....
T Consensus 121 ~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~a~~~~~ 177 (284)
T 3smz_A 121 SLERCFLVYSERTGQSKGY-GFAEYMKKDSAARAKSDLLGKPLGPR---TLYVHWTDAGQL 177 (284)
T ss_dssp CEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCGGGC
T ss_pred CeeEEEEEeeCCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCCC
Confidence 99999987532 355 99999999999999999999999998 999999977543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=2.4e-25 Score=206.45 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=132.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccC-ceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFG-FVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG-~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
...+|||++++. ++++|+++|+.|| +|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---------EG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 456789998874 4899999999999 999998876 23567899999999999999999999985 69
Q ss_pred ceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCC-CCHHHHHHHH
Q 019494 80 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA-VTLDVLHMVF 158 (340)
Q Consensus 80 ~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~-vt~~~L~~~F 158 (340)
+.|+|.++......... ......+++|+ |.||+.. +|+++|+++|
T Consensus 187 ~~l~v~~a~~~~~~~~~--------------------------------~~~~~~~~~l~--v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 187 YTLVTKVSNPLEKSKRT--------------------------------DSATLEGREIM--IRNLSTELLDENLLRESF 232 (292)
T ss_dssp EECEEEECCCC-----------------------------------------CCTTTEEE--EEEECTTTCCHHHHHHHH
T ss_pred cEEEEEECCCCcccccc--------------------------------cccCCCCceEE--EECCCcccCCHHHHHHHH
Confidence 99999998754221100 00012356777 8899999 9999999999
Q ss_pred cccCCeeEEEEEcCC------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 159 SAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 159 ~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
+.||.|++|+|..+. +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+|+|++++
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~-afV~F~~~~~A~~A~-~l~g~~~~g~---~i~V~~a~~k 291 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCC-AFMVFENKDSAERAL-QMNRSLLGNR---EISVSLADKK 291 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEE-EEEEESSHHHHHHHG-GGTTEEETTE---EEEEEECCCC
T ss_pred hccCCeeEEEEEecCCcCCCCceE-EEEEeCCHHHHHHHH-HhcCCEECCc---EEEEEEecCC
Confidence 999999999987543 465 999999999999999 9999999998 9999999865
No 21
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.92 E-value=4.3e-25 Score=179.69 Aligned_cols=102 Identities=43% Similarity=0.670 Sum_probs=96.1
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+++++|+|+|+||++.+|+++|+++|++||.|++|+|+.++ ||+|||+|+|.++|.+|++.|||..|+++ ||.|+|+|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence 46899999999999999999999999999999999998764 86799999999999999999999999997 77999999
Q ss_pred ecCCCCccccCCCCCCCCCCCCCC
Q 019494 213 SRHTDLSIKVNNDRSRDYTLPSTP 236 (340)
Q Consensus 213 ak~~~~~~~~~~~~~~d~~~p~~p 236 (340)
|+++.+.++.+++++||||+|.+|
T Consensus 99 Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CSCSCCCCSSCSSSEEESSCCCCC
T ss_pred ecCCcceeecCCCCCCCCCCCCCC
Confidence 999999999999999999999876
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=7.2e-25 Score=203.24 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=127.7
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
++..+|||++++.+ |++|+++|+.||+|.+|.+++. .++++|||+|.+.++|.+|++ |||..+ .|+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---------~g~ 108 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---------GQN 108 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---------TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---------CCc
Confidence 35678999998844 8999999999999999998872 246799999999999999995 999874 699
Q ss_pred eEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcc
Q 019494 81 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 160 (340)
Q Consensus 81 ~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~ 160 (340)
+|+|.++. +.+|+ |+||+..+|+++|+++|+.
T Consensus 109 ~i~v~~~~----------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 109 EIIVSHLT----------------------------------------------ECTLW--MTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp ECEEEECC----------------------------------------------SCEEE--EECCCTTCCHHHHHHHHHH
T ss_pred EEEEEECC----------------------------------------------CCEEE--EECCCCCCCHHHHHHHHHH
Confidence 99999753 23455 8999999999999999999
Q ss_pred cC-CeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 161 FG-PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 161 fG-~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|| .|..|.+... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+++..
T Consensus 141 ~G~~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 198 (292)
T 2ghp_A 141 INVVALSIRLPSLRFNTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGY---TLVTKVSNPLE 198 (292)
T ss_dssp TTCCCCEEECC-------CCE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCCC-
T ss_pred hCCCeEEEEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCc
Confidence 99 9999998652 3565 99999999999999999999999998 99999988654
No 23
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.91 E-value=2.3e-24 Score=182.82 Aligned_cols=111 Identities=50% Similarity=0.743 Sum_probs=97.9
Q ss_pred CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
.++++++.|+|+||++.+|+++|+++|++||+|++|+|+.++ +|+ |||+|+|.++|.+|++.|||..|+++ ||.|+|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgf-AFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V 118 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQ-ALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 118 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEE-EEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCE-EEEEECCHHHHHHHHHHhCCCEecCC-CcEEEE
Confidence 457899999999999999999999999999999999998665 455 99999999999999999999999885 569999
Q ss_pred EeecCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 019494 211 SYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 244 (340)
Q Consensus 211 ~~ak~~~~~~~~~~~~~~d~~~p~~p~~~~~~~~ 244 (340)
+|++++++.++.+++++||||+|.+|.+.+++++
T Consensus 119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~ 152 (164)
T 1sjr_A 119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 152 (164)
T ss_dssp EECSSSSCCCCCCSSSEEESSCSCCCCCC-----
T ss_pred EEecCCcccccccCCCCccccCCCCCCCCCCCCc
Confidence 9999999999999999999999998877655443
No 24
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.85 E-value=2.3e-21 Score=158.52 Aligned_cols=101 Identities=43% Similarity=0.631 Sum_probs=88.9
Q ss_pred ccccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
...+|||+|++ .+|++|+++|++||+|.+|++.++.++++|||+|.+.++|++|++.|||+.|+ .++++|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-------g~~~~Lr 99 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLR 99 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-------TTEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-------CCCcEEE
Confidence 34678999985 56899999999999999999888765656999999999999999999999986 2348999
Q ss_pred EeeccCCcccccccCcCCcCCCCCCCCCCC
Q 019494 84 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 113 (340)
Q Consensus 84 v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~ 113 (340)
|+||+.+++.++++++++|||++|.++..+
T Consensus 100 I~~ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 100 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp EEECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred EEecCCCceeEEecCCCcccCCCCCCCCCC
Confidence 999999999999999999999999887643
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=2.3e-20 Score=156.65 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=107.6
Q ss_pred cCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcC
Q 019494 41 TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 119 (340)
Q Consensus 41 ~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (340)
.-+++++|+|.+.++|++|++.| ||..+ .| .+++.+++.+.............
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---------~G-~~~~~~a~~~~~~~~~~~~~~~~---------------- 64 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV---------DG-EWTYDDATKTFTVTEGSHHHHHH---------------- 64 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC---------CC-EEEEETTTTEEEEECSSSSCCCC----------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC---------CC-ceecccccCcccccccccccccc----------------
Confidence 34668999999999999999999 99885 57 99999877542211100000000
Q ss_pred CCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe
Q 019494 120 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 199 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~ 199 (340)
.......++++|+ |+||+.++|+++|+++|+.||.|++|+|..+++|+ |||+|.+.++|.+|++.|||..
T Consensus 65 -------~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 65 -------MHRDSCPLDCKVY--VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGF-AFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp -------SCSSSSTTSCEEE--EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSE-EEEEESSHHHHHHHHHHHSSSC
T ss_pred -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcE-EEEEECCHHHHHHHHHHcCCCE
Confidence 0001112456766 89999999999999999999999999998877786 9999999999999999999999
Q ss_pred eCCCCccEEEEEeecCC
Q 019494 200 IYDGGFCKLHISYSRHT 216 (340)
Q Consensus 200 i~~~~~~~l~v~~ak~~ 216 (340)
|.|+ .|+|+|++++
T Consensus 135 ~~g~---~l~v~~a~~~ 148 (150)
T 2i2y_A 135 LCGC---RVRVELSNGE 148 (150)
T ss_dssp SSSS---CCEEEECCCC
T ss_pred ECCe---EEEEEEcCCC
Confidence 9998 9999998765
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.3e-19 Score=153.05 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=98.7
Q ss_pred ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcC
Q 019494 40 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 119 (340)
Q Consensus 40 ~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (340)
...++||||+|.+.++|++|++.+++... .+..+.+................
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~------------------- 61 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG---------VDGEWTYDDATKTFTVTEGSHHH------------------- 61 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHT---------CCCEEEEETTTTEEEEECCCCCS-------------------
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCC---------CCCcccccCcccccccccccccc-------------------
Confidence 45678999999999999999999887542 12222222211110000000000
Q ss_pred CCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHH
Q 019494 120 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 194 (340)
Q Consensus 120 ~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ 194 (340)
..........+|+ |+||+.++|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.
T Consensus 62 -------~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 62 -------HHHMDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp -------SCCCCCCBCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHHHHH
T ss_pred -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHH
Confidence 0000012345666 8999999999999999999999999998753 3565 99999999999999999
Q ss_pred hcCCeeCCCCccEEEEEeecCCCC
Q 019494 195 LEGHCIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 195 lng~~i~~~~~~~l~v~~ak~~~~ 218 (340)
|||..|.|+ .|+|+|++....
T Consensus 132 l~g~~~~g~---~l~v~~a~~~~~ 152 (158)
T 2kn4_A 132 MDGAVLDGR---ELRVQMARYGRP 152 (158)
T ss_dssp STTEESSSS---EEEEEEECCSSC
T ss_pred hCCCEECCe---EEEEEECCCCCC
Confidence 999999998 999999987643
No 27
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=2e-19 Score=152.49 Aligned_cols=100 Identities=42% Similarity=0.612 Sum_probs=88.0
Q ss_pred cccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
..+|||+|++ ++|++|+++|++||+|.+|+++++.+++||||+|.|.++|++|++.|||+.|+ .++++|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-------g~g~~L~V 118 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLRI 118 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS-------SSCSCEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCcEEEE
Confidence 3567888877 34899999999999999999987666779999999999999999999999975 24599999
Q ss_pred eeccCCcccccccCcCCcCCCCCCCCCCC
Q 019494 85 TYSAHTDLSVKFQSHRSRDYTNPYLPVAP 113 (340)
Q Consensus 85 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~ 113 (340)
+|++.+++.++.+.+++|||+++.++...
T Consensus 119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~ 147 (164)
T 1sjr_A 119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGD 147 (164)
T ss_dssp EECSSSSCCCCCCSSSEEESSCSCCCCCC
T ss_pred EEecCCcccccccCCCCccccCCCCCCCC
Confidence 99999999999999999999999887654
No 28
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=144.10 Aligned_cols=95 Identities=37% Similarity=0.500 Sum_probs=82.2
Q ss_pred ccccCCCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 8 SRKYLQWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 8 ~~~~l~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
.+|||+|++ ++|++|+++|++||+|.+|+++++ .+++|||+|.|.++|.+|++.|||..|+ .++++|+|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~-------g~~~~l~V~ 97 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIY-------AGCCTLKIE 97 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCB-------TTBSEEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCeEEEEE
Confidence 356777775 448999999999999999998775 4546999999999999999999999975 234799999
Q ss_pred eccCCcccccccCcCCcCCCCCCCC
Q 019494 86 YSAHTDLSVKFQSHRSRDYTNPYLP 110 (340)
Q Consensus 86 ~s~~~~l~~~~~~~~~~~~~~~~~~ 110 (340)
|++.+.+.++.+++++|||++|.++
T Consensus 98 ~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 98 YARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred EecCCcceeecCCCCCCCCCCCCCC
Confidence 9999999999999999999998765
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=130.94 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=72.1
Q ss_pred CCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe--eCCCCccEEE
Q 019494 132 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLH 209 (340)
Q Consensus 132 ~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~--i~~~~~~~l~ 209 (340)
.+++++|+ |+||++.+|+++|+++|++||.|++|++.+.+ |+ |||+|++.++|.+|++.||+.. |.|+ .|+
T Consensus 18 ~~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~ 90 (100)
T 3r27_A 18 TPASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQ-ALVEFEDVLGACNAVNYAADNQIYIAGH---PAF 90 (100)
T ss_dssp CCCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCEEETTE---EEE
T ss_pred CCCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhcCCCceeCCc---EEE
Confidence 35688888 89999999999999999999999999998654 65 9999999999999999999986 6788 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|+||+.+.+
T Consensus 91 V~~S~~k~l 99 (100)
T 3r27_A 91 VNYSTSQKI 99 (100)
T ss_dssp EEECSCSCC
T ss_pred EEecccccc
Confidence 999998765
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=2.9e-18 Score=137.56 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.++|||++++. +|++|+++|++||+|.+|++++. .+++||||+|.+.++|++|++.|||..| .|++|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---------~g~~i 75 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRKV 75 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE---------CCEEE
Confidence 46799999985 49999999999999999988763 3467899999999999999999999985 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 76 ~V~~a~~~ 83 (115)
T 4f25_A 76 FVGRFKSR 83 (115)
T ss_dssp EEEESSCC
T ss_pred EEEECCCc
Confidence 99998754
No 31
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.9e-17 Score=127.34 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=71.7
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCe--eCCCCccEEEE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 210 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~--i~~~~~~~l~v 210 (340)
+++++|+ |+||++.+|+++|+++|++||.|++|.|.+.+ |+ |||+|++.++|.+|++.|++.. |.|+ .|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V 85 (104)
T 1wex_A 13 SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQ-ALVEFENIDSAKECVTFAADVPVYIAGQ---QAFF 85 (104)
T ss_dssp CCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 4678888 88999999999999999999999999988754 65 9999999999999999998754 8888 9999
Q ss_pred EeecCCCCcc
Q 019494 211 SYSRHTDLSI 220 (340)
Q Consensus 211 ~~ak~~~~~~ 220 (340)
+|++.+..+.
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9999877653
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=129.54 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..|+..|||+|++. +|+||+++|++||+|.+|++++ +++||||+|.+.++|.+|++.|++..+. +.|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~-------i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEE-------ETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCce-------eCCcE
Confidence 45778899999984 4899999999999999999886 4578999999999999999999998743 57999
Q ss_pred EEEeeccCCcc
Q 019494 82 LRITYSAHTDL 92 (340)
Q Consensus 82 l~v~~s~~~~l 92 (340)
|+|+||++++|
T Consensus 89 i~V~~S~~k~l 99 (100)
T 3r27_A 89 AFVNYSTSQKI 99 (100)
T ss_dssp EEEEECSCSCC
T ss_pred EEEEecccccc
Confidence 99999998865
No 33
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=128.03 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=68.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++.|+ |+|||.++|+++|+++|++||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 19 gt~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l~ 92 (99)
T 4fxv_A 19 GTNLI--VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY-GFVNYVTAKDAERAINTLNGLRLQSK---TIK 92 (99)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccccc-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 45666 99999999999999999999999999987532 355 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|+||+++
T Consensus 93 V~~AkPS 99 (99)
T 4fxv_A 93 VSYARPS 99 (99)
T ss_dssp EEECCBC
T ss_pred EEEeeCC
Confidence 9999863
No 34
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=128.29 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~v~ 211 (340)
++++|+ |+||++++|+++|+++|++||+|++|+|.+.+ |+ |||+|++.++|.+|++.|++ ..|.|+ .|+|+
T Consensus 15 ~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-Gf-aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V~ 87 (105)
T 1sjq_A 15 PSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQ 87 (105)
T ss_dssp CCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTSCCEETTE---ECCBC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEEE
Confidence 467777 89999999999999999999999999998764 65 99999999999999999874 689998 99999
Q ss_pred eecCCCCcc
Q 019494 212 YSRHTDLSI 220 (340)
Q Consensus 212 ~ak~~~~~~ 220 (340)
||+.+.+..
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998877653
No 35
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=128.51 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=72.4
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEEE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI 210 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~v 210 (340)
+++++|+ |+||++++|+++|+++|++||.|++|+|++.+ |+ |||+|++.++|.+|++.|++ ..|.|+ .|+|
T Consensus 29 ~ps~~Lf--VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~-AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~V 101 (119)
T 2ad9_A 29 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 101 (119)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TE-EEEECSCHHHHHHHHHHHHHHCCCBTTB---CCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhccCCceECCe---EEEE
Confidence 4577877 89999999999999999999999999998764 65 99999999999999999984 689998 9999
Q ss_pred EeecCCCCcc
Q 019494 211 SYSRHTDLSI 220 (340)
Q Consensus 211 ~~ak~~~~~~ 220 (340)
+||+.+.++.
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999887653
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=4.6e-17 Score=134.35 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=71.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCcc
Q 019494 44 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 123 (340)
Q Consensus 44 ~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (340)
.++|++|.|+..|..|+..++|... .++. ...++...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~---------~g~~-~~~~~~~~--------------------------------- 41 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQ---------MGRG-SMSYGRPP--------------------------------- 41 (135)
T ss_dssp ----------------------------------------CCSCCSC---------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCC---------CCCC-CCCcCCCC---------------------------------
Confidence 4689999999999999999998652 2221 11111100
Q ss_pred ccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494 124 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH 198 (340)
Q Consensus 124 ~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~ 198 (340)
....++++|+ |+||+.++|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||.
T Consensus 42 ------~~~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 42 ------PDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp ------SSGGGCCCEE--EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC-CEEECSCHHHHHHHHTTTTTC
T ss_pred ------CCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCC
Confidence 0011245566 8999999999999999999999999998643 2566 999999999999999999999
Q ss_pred eeCCCCccEEEEEeecCCCC
Q 019494 199 CIYDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 199 ~i~~~~~~~l~v~~ak~~~~ 218 (340)
.|.++ .|+|+|++....
T Consensus 113 ~i~g~---~l~V~~a~~~~~ 129 (135)
T 2lea_A 113 VLDGR---ELRVQMARYGRP 129 (135)
T ss_dssp CSSSS---CCEEEECCCCCC
T ss_pred EECCE---EEEEEECCCCCC
Confidence 99999 999999987553
No 37
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1e-16 Score=121.34 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=65.9
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
|+|+||++.+|+++|+++|++||+|+++++.. ++|| |||+|.+.++|.+|++.|||.+++++ +|+|++|..
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGf-aFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~e 80 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGI-ALCKYTTREEANKAQMALNNCVLANT---TIFAESPSE 80 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCCH
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcE-EEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECCH
Confidence 44999999999999999999999999999876 4576 99999999999999999999999999 999999853
No 38
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=122.62 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCCccEEEE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHI 210 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~~~~l~v 210 (340)
+++++|+ |+||++.+|+++|+++|++||.|++|.|.+. +|+ |||+|++.++|.+|++.|+ +..|.|+ .|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 85 (101)
T 2cq1_A 13 APSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQ-AFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI 85 (101)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCE-EEEEECCHHHHHHHHHHhccCCceECCc---EEEE
Confidence 4578877 8999999999999999999999999998876 465 9999999999999999875 6779998 9999
Q ss_pred EeecCCCCc
Q 019494 211 SYSRHTDLS 219 (340)
Q Consensus 211 ~~ak~~~~~ 219 (340)
+|++.+.++
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999987765
No 39
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=119.49 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCCcEEEEEeecCCCCCCHHH----HHHHHccc-CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~----L~~~F~~f-G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
+++.++ |||.||++.+++++ |+++|++| |+|.+|. .|+ |||+|.+.++|.+|++.|||..++|+ .
T Consensus 6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~-AfV~F~~~esA~~A~~~l~G~~l~gr---~ 75 (96)
T 2diu_A 6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCS-AILRFINQDSAERAQKRMENEDVFGN---R 75 (96)
T ss_dssp CCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTC-EEEEESSHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCE-EEEEECCHHHHHHHHHHhcCCccCCc---e
Confidence 456663 45999999999998 56899999 5999982 276 99999999999999999999999999 9
Q ss_pred EEEEeecCCCCccc
Q 019494 208 LHISYSRHTDLSIK 221 (340)
Q Consensus 208 l~v~~ak~~~~~~~ 221 (340)
|+|+||+..+..+.
T Consensus 76 i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 76 IIVSFTPKNRELCE 89 (96)
T ss_dssp CEEESSCCSCCCCC
T ss_pred EEEEecCCCcceeE
Confidence 99999998876543
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.8e-16 Score=127.03 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=69.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
+..|+ |+||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.
T Consensus 5 ~~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~-afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~ 78 (115)
T 4f25_A 5 SGNIF--IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVG 78 (115)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCEEE--ECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCce-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 34555 99999999999999999999999999987543 355 99999999999999999999999998 99999
Q ss_pred eecCCCCc
Q 019494 212 YSRHTDLS 219 (340)
Q Consensus 212 ~ak~~~~~ 219 (340)
+++.+..+
T Consensus 79 ~a~~~~~~ 86 (115)
T 4f25_A 79 RFKSRKER 86 (115)
T ss_dssp ESSCCCC-
T ss_pred ECCCcccc
Confidence 99876543
No 41
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=6.7e-16 Score=120.99 Aligned_cols=77 Identities=25% Similarity=0.486 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |.||+.++|+++|+++|++||.|++|++.+ ++ |||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 10 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLF--VRNLANTVTEEILEKAFSQFGKLERVKKLK---DY-AFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFA 80 (103)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CE-EEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEc
Confidence 456666 899999999999999999999999999873 44 99999999999999999999999998 9999999
Q ss_pred cCCCCc
Q 019494 214 RHTDLS 219 (340)
Q Consensus 214 k~~~~~ 219 (340)
+.....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 877654
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=123.25 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++.++|+ |+||++++|+++|+++|++||.|++|+|+.+. +|+ |||+|++.++|.+|++.|||..|.|+ .
T Consensus 4 ~p~~~lf--V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~A~~Ai~~lng~~~~gr---~ 77 (110)
T 3s8s_A 4 IPLKEVT--FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGL-ARVLFTSTRGAKETVKNLHLTSVMGN---I 77 (110)
T ss_dssp SCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3566777 89999999999999999999999999987532 465 99999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.+++....
T Consensus 78 i~V~~a~~~~~ 88 (110)
T 3s8s_A 78 IHAQLDIKGQQ 88 (110)
T ss_dssp CEEEECSTTHH
T ss_pred EEEEECCCCcH
Confidence 99999976643
No 43
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=123.63 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=68.4
Q ss_pred CCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC--eeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~--~i~~~~~~~l~v 210 (340)
++++|+ |+||++ .+|+++|+++|++||+|++|+|.+.+ |+ |||+|++.++|.+|++.||+. .|.|+ .|+|
T Consensus 14 p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 86 (102)
T 1x4d_A 14 TRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NE-AFIEMATTEDAQAAVDYYTTTPALVFGK---PVRV 86 (102)
T ss_dssp CCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SC-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHHcCCCceECCc---EEEE
Confidence 577877 899999 99999999999999999999998755 65 999999999999999999975 48998 9999
Q ss_pred EeecCC
Q 019494 211 SYSRHT 216 (340)
Q Consensus 211 ~~ak~~ 216 (340)
.||+..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999854
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=122.69 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=65.5
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
-++|||+|++.+ |++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|++|++.|||..| .|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---------~gr 89 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---------QSK 89 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence 468999999854 999999999999999998876 23567899999999999999999999985 699
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
+|+|+||+.
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999999874
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=6.1e-16 Score=116.51 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=67.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|++||.|.+|++... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 79 (85)
T 3mdf_A 6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 79 (85)
T ss_dssp CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 466777 8999999999999999999999999998643 2465 99999999999999999999999998 99
Q ss_pred EEEeec
Q 019494 209 HISYSR 214 (340)
Q Consensus 209 ~v~~ak 214 (340)
+|+|||
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=118.29 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=71.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++++|+ |.||+..+|+++|+++|++||.|++|+|... ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2cqi_A 14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVKV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCE-EEEEECCHHHHHHHHHHhCCCCcCCC---eEEE
Confidence 466767 8999999999999999999999999998764 3465 99999999999999999999999998 9999
Q ss_pred EeecCCCCc
Q 019494 211 SYSRHTDLS 219 (340)
Q Consensus 211 ~~ak~~~~~ 219 (340)
.|++....+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999886543
No 47
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=116.29 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+||+.++|+++|+++|++||.|++|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLF--IGNLPREATEQEIRSLFEQYGKVLECDII---KNY-GFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEAS 77 (90)
T ss_dssp CCEEEE--EESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECS
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHhcCCccCCc---EEEEEEC
Confidence 456666 89999999999999999999999999988 354 99999999999999999999999999 9999998
Q ss_pred cCCCC
Q 019494 214 RHTDL 218 (340)
Q Consensus 214 k~~~~ 218 (340)
+....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77553
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=118.10 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 80 (99)
T 1whw_A 7 GSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---ML 80 (99)
T ss_dssp SCEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 466666 89999999999999999999999999986532 465 99999999999999999999999999 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++.+..
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999987654
No 49
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=118.97 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=69.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCC-----CCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~-----~~~~~l~ 209 (340)
...|+ |.||++++|+++|+++|++||+|+.|+|..+ |+ |||+|.+.++|.+|++.|||..|.+ + .|+
T Consensus 15 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i~ 86 (108)
T 1x4c_A 15 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YIR 86 (108)
T ss_dssp CCEEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CE-EEEEECCHHHHHHHHHHHCcCCccCCcCcce---EEE
Confidence 45566 8999999999999999999999999999876 65 9999999999999999999999999 7 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987543
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-16 Score=119.87 Aligned_cols=81 Identities=17% Similarity=0.366 Sum_probs=71.6
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.++++|+ |.||+..+|+++|+++|++||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 10 ~~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 2cqb_A 10 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 83 (102)
T ss_dssp CCCSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence 3466777 8999999999999999999999999998654 3565 99999999999999999999999998 9
Q ss_pred EEEEeecCCCCc
Q 019494 208 LHISYSRHTDLS 219 (340)
Q Consensus 208 l~v~~ak~~~~~ 219 (340)
|+|.|++....+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 51
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=7.1e-16 Score=131.34 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=70.4
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCC
Q 019494 48 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD 127 (340)
Q Consensus 48 VeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (340)
.+|.+.++|..|+..|++.... .+|+.++...+...... .|.........+ ...
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~-------~kgr~~~~~~~~~~~~~---------~~~~~~~s~~~~----------~~~ 64 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH-------RKGRGFGSDSNTREAIH---------SYERVRNEDDDE----------LEP 64 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccchhhcccccc-------ccCCCCCCCcccccccc---------CccccccCCCCC----------CCC
Confidence 7899999999999999987642 34555555543321100 000000000000 000
Q ss_pred CCCCCCCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 128 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 128 ~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
......++++|+ |.||+..+|+++|+++|+.||.|..|.|...+ +|+ |||+|.+.++|.+|++.|||..|.|
T Consensus 65 ~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 65 GPQRSVEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp -CCCCC-CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCEEE--EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 011122356666 89999999999999999999999999987642 455 9999999999999999999999999
Q ss_pred CCccEEEEEeecCCCCc
Q 019494 203 GGFCKLHISYSRHTDLS 219 (340)
Q Consensus 203 ~~~~~l~v~~ak~~~~~ 219 (340)
+ .|+|.|++.....
T Consensus 142 ~---~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 142 Q---TIQVDWCFVKGPK 155 (165)
T ss_dssp E---ECEEEESEECC--
T ss_pred E---EEEEEEecCCCCC
Confidence 8 9999999876543
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=123.19 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=67.2
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC--CCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng--~~i~~~~~~~~~~~~~ 81 (340)
+...|||++++. +|+||+++|++||+|.+|++++ +++||||+|.+.++|++|++.|++ .. +.|++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~---------l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPV---------LRGQP 83 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCE---------ETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCce---------ECCEE
Confidence 457889999885 4899999999999999999886 467899999999999999999975 44 47999
Q ss_pred EEEeeccCCcccc
Q 019494 82 LRITYSAHTDLSV 94 (340)
Q Consensus 82 l~v~~s~~~~l~~ 94 (340)
|+|+|++.+.+..
T Consensus 84 l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 84 IYIQFSNHKELKT 96 (105)
T ss_dssp CCBCCCSSSSCCC
T ss_pred EEEEEcCCCCCCc
Confidence 9999999776543
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=115.92 Aligned_cols=76 Identities=11% Similarity=0.267 Sum_probs=67.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+.+|+ |+||+.++|+++|+++|++||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 6 ~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 79 (87)
T 3bs9_A 6 HFHVF--VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QIR 79 (87)
T ss_dssp CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ceEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---EEE
Confidence 55556 89999999999999999999999999987642 355 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|+|++.+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999764
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=1e-15 Score=118.24 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=70.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+..+|+++|+++|++||.|.+|+|...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 2 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 75 (96)
T 2x1f_A 2 SRVVY--LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY-AFIEFRDLESSASAVRNLNGYQLGSR---FLK 75 (96)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CcEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 56666 88999999999999999999999999987542 465 99999999999999999999999998 999
Q ss_pred EEeecCCCCc
Q 019494 210 ISYSRHTDLS 219 (340)
Q Consensus 210 v~~ak~~~~~ 219 (340)
|.|++.+...
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=116.83 Aligned_cols=80 Identities=16% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++++|+ |.||+..+|+++|+++|++||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 87 (103)
T 2cq3_A 14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 456666 89999999999999999999999999988643 465 99999999999999999999999998 9999
Q ss_pred EeecCCCCc
Q 019494 211 SYSRHTDLS 219 (340)
Q Consensus 211 ~~ak~~~~~ 219 (340)
.|++.+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=118.37 Aligned_cols=80 Identities=14% Similarity=0.391 Sum_probs=71.3
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.++++|+ |.||+.++|+++|+++|++||.|++|+|... .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 10 ~~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 1x5s_A 10 SDEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---Q 83 (102)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---C
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3467777 8999999999999999999999999998763 2465 99999999999999999999999998 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|+|++....
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=116.13 Aligned_cols=76 Identities=21% Similarity=0.439 Sum_probs=68.3
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
+++++|+ |.||+..+|+++|+++|++||.|++|++... .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 14 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 87 (94)
T 2e5h_A 14 PSKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV-AFILFLDKDSAQNCTRAINNKQLFGR---V 87 (94)
T ss_dssp CCTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTC-EEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 3466777 8899999999999999999999999998753 2465 99999999999999999999999998 9
Q ss_pred EEEEeec
Q 019494 208 LHISYSR 214 (340)
Q Consensus 208 l~v~~ak 214 (340)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 58
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=117.52 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeC--CCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~--~~~~~~l~v~ 211 (340)
++++|+ |.||+.++|+++|+++|++||.|++|.+... +|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+
T Consensus 16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V~ 88 (97)
T 1why_A 16 PTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSF-AYIQYESLDAAQAACAKMRGFPLGGPDR---RLRVD 88 (97)
T ss_dssp CCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCC-EEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCE-EEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEEE
Confidence 466777 8999999999999999999999999999876 465 999999999999999999999999 77 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 988754
No 59
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=123.62 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=68.7
Q ss_pred CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC--CeeCCCCccEEE
Q 019494 133 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 209 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng--~~i~~~~~~~l~ 209 (340)
.++++|+ |+||+++ +|+++|+++|++||+|++|+|.+. +|+ |||+|++.++|.+|++.||+ ..|.|+ .|+
T Consensus 23 ~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~ 95 (112)
T 1x4f_A 23 ELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQ-AFIEMETREDAMAMVDHCLKKALWFQGR---CVK 95 (112)
T ss_dssp CCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHHHSCCCSSSS---CCE
T ss_pred CCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 3577877 8999998 999999999999999999999865 465 99999999999999999875 458898 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|+|++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 60
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=117.47 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=70.6
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
.++++|+ |.||+..+|+++|+++|++||.|++|++.+.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|.|
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GF-GFIRLETRTLAEIAKVELDNMPLRGK---QLRVRF 85 (99)
T ss_dssp CCTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TE-EEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEE
Confidence 3467777 89999999999999999999999999998654 65 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 019494 213 SRHTD 217 (340)
Q Consensus 213 ak~~~ 217 (340)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 88754
No 61
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=120.69 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..|...|||++++. +|+||+++|++||+|.+|++++ .++||||+|.+.++|.+|++.|++..+. +.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVY-------IAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCB-------SSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEE
Confidence 34667899999885 4899999999999999999876 4678999999999999999999876532 57999
Q ss_pred EEEeeccCCccc
Q 019494 82 LRITYSAHTDLS 93 (340)
Q Consensus 82 l~v~~s~~~~l~ 93 (340)
|+|+|++.+.+.
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999977543
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=122.09 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=66.0
Q ss_pred cccccccCCCCCC-C--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 5 WPLSRKYLQWQLS-A--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 5 ~~~~~~~l~~~~~-~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
.|...|||+|++. + |+||+++|++||+|.+|++++ +++||||+|.+.++|.+|++.||+.... +.|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPAL-------VFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCE-------ETTEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCce-------ECCcE
Confidence 4667899999998 4 899999999999999999886 3468999999999999999999976421 47999
Q ss_pred EEEeeccC
Q 019494 82 LRITYSAH 89 (340)
Q Consensus 82 l~v~~s~~ 89 (340)
|+|+|++.
T Consensus 84 l~V~~a~~ 91 (102)
T 1x4d_A 84 VRVHLSQK 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99999984
No 63
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=3.4e-16 Score=125.03 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=84.8
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
.+..+|||++++. +|++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 76 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---------SNRY 76 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---------SSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeE
Confidence 3567899999985 4899999999999999998876 34567899999999999999999999984 6999
Q ss_pred EEEeeccCCcccccccCcCCcCCCCCCCCCCCCccCcCCCccccCCCCCCCCCCcEEEEEeecCCCCCCHHHHHHHHccc
Q 019494 82 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 161 (340)
Q Consensus 82 l~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~vl~v~v~nl~~~vt~~~L~~~F~~f 161 (340)
|+|+|++.+.. ..+++...++++|.++|++|
T Consensus 77 l~v~~a~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 77 LVVLYYNANRA-------------------------------------------------FQKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp CEEEECCHHHH-------------------------------------------------TTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCChh-------------------------------------------------hhhhhHhHhHHHHHHHHHHh
Confidence 99999875421 13556678899999999999
Q ss_pred CC
Q 019494 162 GP 163 (340)
Q Consensus 162 G~ 163 (340)
|-
T Consensus 108 g~ 109 (115)
T 3lqv_A 108 GI 109 (115)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 64
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=124.60 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=68.9
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..+...|||++++. +|+||+++|++||+|.+|++++. ++||||+|.+.++|.+|++.|++..+. +.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~-------l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV-------LRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCC-------BTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCce-------ECCeE
Confidence 45677899999884 48999999999999999998863 578999999999999999999853211 57999
Q ss_pred EEEeeccCCcccc
Q 019494 82 LRITYSAHTDLSV 94 (340)
Q Consensus 82 l~v~~s~~~~l~~ 94 (340)
|+|+|++.+.+..
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999999876653
No 65
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=120.70 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=66.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC-CeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhc-CCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ln-g~~i~~~~~~~ 207 (340)
|++|+ |+|||.++|+++|+++|+.|| +|++|+|..+ ++|+ |||+|.+.++|.+|++.|+ +..|.|+ .
T Consensus 1 S~~i~--v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~-aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~ 74 (91)
T 2lxi_A 1 SNIVM--LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGF-AFVEFSHLQDATRWMEANQHSLNILGQ---K 74 (91)
T ss_dssp CCEEE--EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSE-EEEECSSHHHHHHHHHTTTTEEEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHhcCCCeEECCE---E
Confidence 34666 899999999999999999999 8999988643 3576 9999999999999999875 5678888 9
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
|+|+||+++.
T Consensus 75 i~V~~a~~~~ 84 (91)
T 2lxi_A 75 VSMHYSDPKP 84 (91)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 66
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=4.5e-16 Score=117.79 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=67.0
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
|.++.|||+|+.. ||++|+++|++||+|.++.+.. +++||||+|.|.++|++|++.|||..+ .|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l---------~gr~I 73 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVL---------ANTTI 73 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEE---------CCcEE
Confidence 6788899999984 4899999999999999998865 567899999999999999999999884 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++..
T Consensus 74 ~V~~A~e~ 81 (89)
T 2wbr_A 74 FAESPSEN 81 (89)
T ss_dssp EEECCCHH
T ss_pred EEEECCHH
Confidence 99998643
No 67
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-15 Score=115.57 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=70.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|++||.|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (95)
T 2dnz_A 4 GSSGLY--VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY-GFITFSDSECARRALEQLNGFELAGR---PM 77 (95)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence 466777 88999999999999999999999999987642 465 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++.+.
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987654
No 68
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=117.97 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=68.6
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
|+|+||+.++|+++|+++|++||+|++|++..+++|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+|++...
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~~ 76 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGF-AFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGMP 76 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSE-EEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCE-EEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCCC
Confidence 4489999999999999999999999999998765675 99999999999999999999999999 99999998765
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=116.92 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred CcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 135 SNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
.+.|+ |+||+..+|+++|+ ++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 9 ~~~l~--V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~l 82 (96)
T 2dgx_A 9 GADVQ--VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLK-AVVQMENLQDAIGAVNSLHRYKIGSK---KI 82 (96)
T ss_dssp CEEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCC-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 44555 99999999999999 999999999999997543 566 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+++++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999987654
No 70
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=5e-15 Score=118.14 Aligned_cols=80 Identities=10% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (115)
T 2dgo_A 14 NHFHVF--VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QI 87 (115)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 355666 89999999999999999999999999987653 355 99999999999999999999999998 99
Q ss_pred EEEeecCCCCc
Q 019494 209 HISYSRHTDLS 219 (340)
Q Consensus 209 ~v~~ak~~~~~ 219 (340)
+|.|++.....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 71
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=115.68 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..+ .+|+ |||+|.+.++|.+|++ ||+..|.++ .|
T Consensus 9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~l 81 (99)
T 2dgs_A 9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF-GFITFEDEQSVDQAVN-MHFHDIMGK---KV 81 (99)
T ss_dssp SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSE-EEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCce-EEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence 466767 8999999999999999999999999998754 3565 9999999999999998 999999999 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++++..
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999987654
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.3e-15 Score=112.80 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=66.7
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|+|+||+.++|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a~ 79 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAA 79 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccce-EEEEECCHHHHHHHHHHhcCCeeCCc---EEEEEecC
Confidence 4599999999999999999999999999987542 355 99999999999999999999999998 99999998
Q ss_pred CCC
Q 019494 215 HTD 217 (340)
Q Consensus 215 ~~~ 217 (340)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 73
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=113.88 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHh-cCCeeCCCCccEEEEEe
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHISY 212 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~l-ng~~i~~~~~~~l~v~~ 212 (340)
++++|+ |+||+.++|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|.+|++.| ||..+.|+ .|+|+|
T Consensus 11 ~~~~l~--V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~-afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~~ 83 (85)
T 2ytc_A 11 TITTLY--VGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QC-AFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVKW 83 (85)
T ss_dssp SCCCEE--EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHTTTTTCEETTE---ECCEEE
T ss_pred CccEEE--EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CE-EEEEECCHHHHHHHHHHhcCCeeECCC---EEEEEe
Confidence 456666 89999999999999999999999999998754 54 999999999999999999 99999998 999999
Q ss_pred ec
Q 019494 213 SR 214 (340)
Q Consensus 213 ak 214 (340)
+|
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 74
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=123.11 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=71.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++++|+ |+||++.+++++|+ ++|++||.|++|.+.. +.+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 28 p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~-aFV~F~~~~~A~~Ai~~lng~~l~gr---~ 101 (127)
T 2a3j_A 28 PSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGK-AYIVFATQESAQAFVEAFQGYPFQGN---P 101 (127)
T ss_dssp CCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCC-EEEEESSHHHHHHHHHHSTTCCCTTS---C
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCE-EEEEECCHHHHHHHHHHHCCCEeCCC---E
Confidence 467777 89999999999876 7999999999998864 34676 99999999999999999999999999 9
Q ss_pred EEEEeecCCCCcc
Q 019494 208 LHISYSRHTDLSI 220 (340)
Q Consensus 208 l~v~~ak~~~~~~ 220 (340)
|+|+|++.+...+
T Consensus 102 l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 102 LVITFSETPQSQV 114 (127)
T ss_dssp CEEEECCCCCHHH
T ss_pred EEEEEccCcchhc
Confidence 9999999876544
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-15 Score=117.07 Aligned_cols=79 Identities=19% Similarity=0.400 Sum_probs=70.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHh-cCCeeCCCCcc
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFC 206 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~l-ng~~i~~~~~~ 206 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.| ||..|.++
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCce-EEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 456666 8999999999999999999999999998765 2565 999999999999999999 99999998
Q ss_pred EEEEEeecCCCC
Q 019494 207 KLHISYSRHTDL 218 (340)
Q Consensus 207 ~l~v~~ak~~~~ 218 (340)
.|+|.|++....
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999987653
No 76
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=116.21 Aligned_cols=78 Identities=22% Similarity=0.396 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+.++|+++|+++|+.||.|++|+|...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 16 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 89 (100)
T 2do4_A 16 EKHKLF--ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGL-AYVEYENESQASQAVMKMDGMTIKEN---IIK 89 (100)
T ss_dssp CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 356666 89999999999999999999999999987644 354 99999999999999999999999999 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.|++++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998764
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=4e-15 Score=116.71 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=70.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCC---CCcc
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYD---GGFC 206 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~---~~~~ 206 (340)
++++|+ |+||+.++|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..+.+ +
T Consensus 14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~gg~~~--- 87 (105)
T 2dnh_A 14 RDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGC-AFVKFSSHTEAQAAIHALHGSQTMPGASS--- 87 (105)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEE-EEEEESSHHHHHHHHHHHSSCCCCTTCSS---
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcE-EEEEeCCHHHHHHHHHHHcCCccCCCCCc---
Confidence 466777 89999999999999999999999999987653 354 9999999999999999999999998 6
Q ss_pred EEEEEeecCCCCc
Q 019494 207 KLHISYSRHTDLS 219 (340)
Q Consensus 207 ~l~v~~ak~~~~~ 219 (340)
.|+|.|++....+
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876643
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=118.86 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
.+++|+ |+||+.++|+++|+++|++||+|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 28 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V 101 (109)
T 2err_A 28 QPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 101 (109)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTE-EEEECCCSHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 456666 89999999999999999999999999987542 565 99999999999999999999999998 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
+|++.+.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998764
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6e-15 Score=116.64 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
++++|+ |.||+..+|+++|+++|++||.|+.|+|.... +|+ |||+|.+.++|.+|++.||+..|.++ .|+|+
T Consensus 21 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 94 (109)
T 1x4a_A 21 NDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVE 94 (109)
T ss_dssp CSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 466777 89999999999999999999999999986532 466 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 987654
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-15 Score=118.13 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=70.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+++|+ |+||+.++|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 7 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~V 80 (116)
T 2fy1_A 7 PGKLF--IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGF-AFITFENPADAKNAAKDMNGKSLHGK---AIKV 80 (116)
T ss_dssp CCEEE--EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCE-EEEECSSHHHHHHHHHHCSSCBCSSS---BCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 55666 89999999999999999999999999988643 465 99999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 019494 211 SYSRHTDL 218 (340)
Q Consensus 211 ~~ak~~~~ 218 (340)
+|++....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987654
No 81
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=119.04 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=67.4
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..|...|||+|++. +|+||+++|++||+|.+|++++ .++||||+|.+.++|.+|++.|++..+. +.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPH-------LRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCE-------ETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCcE
Confidence 34667899998884 4899999999999999998876 3678999999999999999988643221 57999
Q ss_pred EEEeeccCCccc
Q 019494 82 LRITYSAHTDLS 93 (340)
Q Consensus 82 l~v~~s~~~~l~ 93 (340)
|+|+|++.+.+.
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999977654
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=2.1e-15 Score=115.33 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC---CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~---~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v 80 (92)
T 2dgv_A 7 GACQIF--VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERACRMMNGMKLSGR---EIDV 80 (92)
T ss_dssp SCCEEE--ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEE-EEEEESSHHHHHHHHHHHTTCCBTTB---CCCC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 466666 89999999999999999999999999987632 355 99999999999999999999999998 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
+|++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9988765
No 83
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.1e-15 Score=133.08 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=72.8
Q ss_pred CCcEEEEEeecCC-CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 134 ESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 134 ~s~vl~v~v~nl~-~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
++++|+ |+||+ +.+|+++|+++|+.||.|++|+|+.+++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|
T Consensus 3 ~~~~l~--V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLM--VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGA-AMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCV 76 (205)
T ss_dssp CCSEEE--EECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTC-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---eEEEEE
Confidence 467777 89999 899999999999999999999999877786 99999999999999999999999999 999999
Q ss_pred ecCCCC
Q 019494 213 SRHTDL 218 (340)
Q Consensus 213 ak~~~~ 218 (340)
++....
T Consensus 77 s~~~~~ 82 (205)
T 3tyt_A 77 SKQPAI 82 (205)
T ss_dssp CSCSCC
T ss_pred ccCCcc
Confidence 987653
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=115.68 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=68.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|++||.|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (95)
T 2cqc_A 14 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI 87 (95)
T ss_dssp GGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 467777 88999999999999999999999999987532 355 99999999999999999999999998 99
Q ss_pred EEEeecC
Q 019494 209 HISYSRH 215 (340)
Q Consensus 209 ~v~~ak~ 215 (340)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 85
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=116.34 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEE-EEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v-~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++++|+ |.||+..+|+++|+++|+.||.|.+| +|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 77 (96)
T 1x5t_A 4 GSSGIF--IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---P 77 (96)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 466777 89999999999999999999999999 88754 2465 99999999999999999999999998 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|+|++.+..
T Consensus 78 l~v~~a~~~~~ 88 (96)
T 1x5t_A 78 ITVSYAFKKDS 88 (96)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEEecccCC
Confidence 99999987653
No 86
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=4.3e-15 Score=115.28 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.0
Q ss_pred CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
+++++|+ |+||+. ++|+++|+++|+.||.|.+|++. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+
T Consensus 20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIEXESQEMNFGK---KLILE 90 (97)
T ss_dssp CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHTTSEETTE---ECEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 3577777 899998 99999999999999999999884 465 99999999999999999999999998 99999
Q ss_pred eecCC
Q 019494 212 YSRHT 216 (340)
Q Consensus 212 ~ak~~ 216 (340)
|++..
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=116.71 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=69.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~-- 78 (98)
T 2cpf_A 4 GSSGLF--IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH-- 78 (98)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccE-EEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence 356666 89999999999999999999999999987422 355 99999999999999999999999998
Q ss_pred cEEEEEeecCCC
Q 019494 206 CKLHISYSRHTD 217 (340)
Q Consensus 206 ~~l~v~~ak~~~ 217 (340)
.|+|.|++...
T Consensus 79 -~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 -KLEVRISERAT 89 (98)
T ss_dssp -ECEEECSSCSS
T ss_pred -EEEEEEccCCC
Confidence 99999987755
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=113.26 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=68.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+++|+ |+||+.++|+++|+++|++||.|.+|.+..+ .+|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 4 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (88)
T 4a8x_A 4 PTKVH--IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQ---EI 77 (88)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcE-EEEEEecHHHHHHHHHHcCCCeECCe---EE
Confidence 45566 8999999999999999999999999997542 3565 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+++++..
T Consensus 78 ~v~~a~~~~ 86 (88)
T 4a8x_A 78 TATAVLAPW 86 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 89
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.8e-15 Score=117.93 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
+++|+ |+||+.++|+++|+++|++||.|++|++... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 27 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAY--IGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGC-CFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWGK 99 (101)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBCC
T ss_pred CCEEE--EcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEecc
Confidence 56666 8999999999999999999999999999854 465 99999999999999999999999998 99999987
Q ss_pred CC
Q 019494 215 HT 216 (340)
Q Consensus 215 ~~ 216 (340)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 90
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=116.94 Aligned_cols=74 Identities=16% Similarity=0.352 Sum_probs=64.5
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCC--eeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCC----eeCCCC
Q 019494 136 NVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH----CIYDGG 204 (340)
Q Consensus 136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~--v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~----~i~~~~ 204 (340)
.+|+ |+||+.++|+|+|+++|++||. |.+|++.++ ++|+ |||+|.+.++|.+|++.|||. .|.|+
T Consensus 10 ~tlf--V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr- 85 (95)
T 2lkz_A 10 DTII--LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSAMDASQLLQILQSLHPPLKIDGK- 85 (95)
T ss_dssp CEEE--EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSSHHHHHHHHHHHSSSSCEEETTE-
T ss_pred CEEE--EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCHHHHHHHHHHhcCCCCCceECCE-
Confidence 4566 9999999999999999999995 668887643 3576 999999999999999999997 48898
Q ss_pred ccEEEEEeecC
Q 019494 205 FCKLHISYSRH 215 (340)
Q Consensus 205 ~~~l~v~~ak~ 215 (340)
.|+|+|||.
T Consensus 86 --~i~V~~Aks 94 (95)
T 2lkz_A 86 --TIGVDFAKS 94 (95)
T ss_dssp --EEEEEECCC
T ss_pred --EEEEEEccC
Confidence 999999985
No 91
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=117.16 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|++||.|++|+|...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (103)
T 2cq0_A 14 DNATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---IL 87 (103)
T ss_dssp SSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHcCCCeeCCc---EE
Confidence 466766 89999999999999999999999999987542 355 99999999999999999999999998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++....
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999887653
No 92
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=115.46 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=68.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+..+|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 15 ~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 88 (95)
T 2ywk_A 15 ADRTVF--VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSF-GFVCFKHPESVSYAIALLNGIRLYGR---PIN 88 (95)
T ss_dssp GGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSTHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCC---EEE
Confidence 466777 88999999999999999999999999987643 354 99999999999999999999999998 999
Q ss_pred EEeecC
Q 019494 210 ISYSRH 215 (340)
Q Consensus 210 v~~ak~ 215 (340)
|+|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 93
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=3.5e-15 Score=118.20 Aligned_cols=76 Identities=21% Similarity=0.495 Sum_probs=68.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+||+.++|+++|+++|++||.|++|++. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 30 ~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a 100 (108)
T 2jvo_A 30 SNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKIL---NGF-AFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVYS 100 (108)
T ss_dssp SCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEESC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEe
Confidence 466777 89999999999999999999999999988 465 99999999999999999999999998 9999999
Q ss_pred cCCCC
Q 019494 214 RHTDL 218 (340)
Q Consensus 214 k~~~~ 218 (340)
+....
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87643
No 94
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=113.14 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=68.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+||+.++|+++|+++|++||.|++|++.+ + +|||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 9 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLH--VGNISPTCTNQELRAKFEEYGPVIECDIVK---D-YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLS 79 (92)
T ss_dssp SSEEEE--EESCCSSCCHHHHHHHHHTTSCCCEEEECS---S-EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEc
Confidence 356666 899999999999999999999999999874 3 599999999999999999999999998 9999998
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+.+.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 95
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.4e-15 Score=115.53 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (105)
T 1x5u_A 14 QDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---PI 87 (105)
T ss_dssp TTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 466777 89999999999999999999999999987542 465 99999999999999999999999999 99
Q ss_pred EEEeecCCCCc
Q 019494 209 HISYSRHTDLS 219 (340)
Q Consensus 209 ~v~~ak~~~~~ 219 (340)
+|.|++....+
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 96
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=4.6e-15 Score=118.46 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
+++++|+ |.||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 23 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 96 (115)
T 2cpz_A 23 PEGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---R 96 (115)
T ss_dssp STTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCcc-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3456677 89999999999999999999999999987543 355 99999999999999999999999998 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|+|++++..
T Consensus 97 l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 LKVQLKRSKND 107 (115)
T ss_dssp CEEECCCCSCC
T ss_pred EEEEEcCCCCc
Confidence 99999987654
No 97
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=115.96 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
++++|+ |.||+..+|+++|+++|++||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2d9p_A 14 QVVNLY--VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEATKAVTEMNGRIVATK---PLYV 87 (103)
T ss_dssp SCCCEE--EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 356666 8999999999999999999999999998854 2354 99999999999999999999999998 9999
Q ss_pred EeecCCCC
Q 019494 211 SYSRHTDL 218 (340)
Q Consensus 211 ~~ak~~~~ 218 (340)
.|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987654
No 98
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=2.1e-15 Score=120.21 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=66.4
Q ss_pred EEEeecCCCCCCHHHHHHHHcccC-CeeEEEEE-cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCC
Q 019494 139 LASIENMQYAVTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 216 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~fG-~v~~v~i~-~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~ 216 (340)
.|+|+||++++|+++|+++|++|| +|..+.|. .+++|+ |||+|++.++|.+|++.|||..|.|+ .|+|.+++..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGf-aFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~a~~~ 105 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERLNNIEFRGS---VITVERDDNP 105 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCC-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEESCC-
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECCCC
Confidence 345999999999999999999999 99999986 345686 99999999999999999999999999 9999998643
No 99
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-15 Score=116.89 Aligned_cols=78 Identities=15% Similarity=0.335 Sum_probs=70.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
.+++|+ |+||+..+|+++|+++|++||.|.+|+|...+ |+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+
T Consensus 24 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GY-SFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWG 96 (109)
T ss_dssp SCCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CE-EEEEECCHHHHHHHHHHcCCCEECCc---EEEEEec
Confidence 356666 89999999999999999999999999998774 65 99999999999999999999999998 9999999
Q ss_pred cCCCC
Q 019494 214 RHTDL 218 (340)
Q Consensus 214 k~~~~ 218 (340)
+....
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87653
No 100
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=1.1e-15 Score=149.65 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=69.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|| |+||+..+|+++|.++|+.||.|+.|.|+.. .+|| |||+|.+.++|.+||+.|||..|.|. .|+
T Consensus 102 ~~~lf--V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~i~gr---~i~ 175 (437)
T 3pgw_S 102 FKTLF--VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGY-AFIEYEHERDMHSAYKHADGKKIDGR---RVL 175 (437)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccce-EEEeeccHHHHHHHHHHcCCCEECCE---EEE
Confidence 55666 8999999999999999999999999998743 2565 99999999999999999999999998 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|.|++....
T Consensus 176 V~~a~~~~~ 184 (437)
T 3pgw_S 176 VDVERGRTV 184 (437)
T ss_pred EEEeCCCCC
Confidence 999986543
No 101
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=119.02 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=69.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
+++|+ |+||+..+|+++|+++|++||.|.+|.|... +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 10 ~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 82 (111)
T 1whx_A 10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GIT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP 82 (111)
T ss_dssp EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCE-EEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECC
Confidence 45666 8999999999999999999999999988764 465 99999999999999999999999999 99999998
Q ss_pred CCCC
Q 019494 215 HTDL 218 (340)
Q Consensus 215 ~~~~ 218 (340)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7543
No 102
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=115.08 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=69.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|+.||.|++|.|... .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 85 (103)
T 2dnm_A 12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGF-AFVRFHDRRDAQDAEAAMDGAELDGR---EL 85 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSC-EEEEESSSSHHHHHHHHHSSCCBTTB---CC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 456766 8999999999999999999999999998753 2465 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|.|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998754
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=2.7e-15 Score=115.90 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=71.6
Q ss_pred CCCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 133 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
+++++|+ |+||+.++|+++|+ ++|++||.|.+|++.. +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 6 ~~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (97)
T 1nu4_A 6 RPNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--- 79 (97)
T ss_dssp CCCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcE-EEEEeCCHHHHHHHHHHhCCCEECCc---
Confidence 3577777 88999999999999 9999999999999874 23465 99999999999999999999999998
Q ss_pred EEEEEeecCCCCc
Q 019494 207 KLHISYSRHTDLS 219 (340)
Q Consensus 207 ~l~v~~ak~~~~~ 219 (340)
.|+|+|++.....
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999887644
No 104
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.5e-15 Score=114.79 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=68.7
Q ss_pred CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
+++++|+ |+||+. .+|+++|+++|++||.|.+|.|. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|.
T Consensus 8 ~~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIECESQEMNFGK---KLILE 78 (96)
T ss_dssp -CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTE-EEEEESCHHHHHHHHHHHTCSSCBTT---TBCEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCeeCCc---EEEEE
Confidence 3466777 899998 99999999999999999999985 365 99999999999999999999999998 99999
Q ss_pred eecCCCC
Q 019494 212 YSRHTDL 218 (340)
Q Consensus 212 ~ak~~~~ 218 (340)
|++....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987653
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=5.9e-15 Score=116.80 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+..+|+++|+++|+.||.|++|+|...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 25 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 98 (110)
T 1oo0_B 25 EGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---TI 98 (110)
T ss_dssp TBEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 456666 89999999999999999999999999987542 465 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++.+.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999998654
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=111.75 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+||+.++|+++|+++|++||.|++|++.+ + +|||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 8 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIF--VGNVSAACTSQELRSLFERRGRVIECDVVK---D-YAFVHMEKEADAKAAIAQLNGKEVKGK---RINVELS 78 (90)
T ss_dssp CSCCEE--EESCCTTCCHHHHHHHHHHHSCEEEEEECS---S-CEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 356666 899999999999999999999999999874 3 499999999999999999999999998 9999998
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 107
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=114.21 Aligned_cols=75 Identities=17% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
+..+|+ |+||+.++|+++|+++|++||.|.+ |+|..++ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 12 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCSEEE--EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEE-EEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEe
Confidence 456666 8999999999999999999999999 8887542 355 99999999999999999999999
Q ss_pred CCCCccEEEEEeec
Q 019494 201 YDGGFCKLHISYSR 214 (340)
Q Consensus 201 ~~~~~~~l~v~~ak 214 (340)
.|+ .|+|+||+
T Consensus 89 ~g~---~l~V~~A~ 99 (99)
T 2la6_A 89 SGN---PIKVSFAT 99 (99)
T ss_dssp SSS---BCEEEECC
T ss_pred CCc---EEEEEecC
Confidence 998 99999975
No 108
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=114.64 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=69.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 14 ~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 87 (114)
T 2do0_A 14 LGSTVF--VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGI-GTVTFEQSIEAVQAISMFNGQLLFDR---PMH 87 (114)
T ss_dssp CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEeCCC---EEE
Confidence 466777 89999999999999999999999999987643 344 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|+|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987644
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=119.68 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=68.8
Q ss_pred CcEEEEEeecCCCCCCHHHHH---HHHcccCCeeEEEEEcCC--------CCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~---~~F~~fG~v~~v~i~~~~--------~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
.++|+ |.||+..+|+++|+ ++|++||+|++|+|..+. +|+ |||+|++.++|.+|++.|||..|.|+
T Consensus 15 ~~~l~--V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 15 KNLVF--VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS-AYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp SSCEE--EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE-EEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE-EEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45566 89999999999999 999999999999987543 255 99999999999999999999999998
Q ss_pred CccEEEEEeecCCC
Q 019494 204 GFCKLHISYSRHTD 217 (340)
Q Consensus 204 ~~~~l~v~~ak~~~ 217 (340)
.|+|+|++.+.
T Consensus 92 ---~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 ---TLKASLGTTKY 102 (111)
T ss_dssp ---EEEEESCCCCS
T ss_pred ---EEEEEeccccc
Confidence 99999988764
No 110
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.9e-15 Score=120.07 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=67.5
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.++++|+ |+||+.++|+++|+++|++||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 38 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 111 (118)
T 2khc_A 38 PEGCNLF--IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF-GFVSFDNPDSAQVAIKAMNGFQVGTK---R 111 (118)
T ss_dssp CCSEEEE--EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCE-EEEEEESSHHHHHHHHHCCCCEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3466666 89999999999999999999999999987532 565 99999999999999999999999998 9
Q ss_pred EEEEeec
Q 019494 208 LHISYSR 214 (340)
Q Consensus 208 l~v~~ak 214 (340)
|+|+|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999975
No 111
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=120.61 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=65.6
Q ss_pred ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..|...|||+|++. +|+||+++|++||+|.+|++++ +++||||+|.+.++|.+|++.|++.... +.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALW-------FQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCC-------SSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCE
Confidence 35677889888774 3799999999999999999875 4678999999999999999999764421 5799
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|+|++.+
T Consensus 93 ~l~V~~a~~~ 102 (112)
T 1x4f_A 93 CVKVDLSEKY 102 (112)
T ss_dssp CCEEEEECSC
T ss_pred EEEEEECccc
Confidence 9999999854
No 112
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=115.05 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=70.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhc------CCeeCC
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIYD 202 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~ln------g~~i~~ 202 (340)
++++|+ |.||+.++|+++|+++|+.||.|..|+|..+ .+|+ |||+|.+.++|.+|++.|| |..|.|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccE-EEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 466666 8999999999999999999999999998743 3565 9999999999999999999 999999
Q ss_pred CCccEEEEEeecCCCC
Q 019494 203 GGFCKLHISYSRHTDL 218 (340)
Q Consensus 203 ~~~~~l~v~~ak~~~~ 218 (340)
+ .|+|.|++.+..
T Consensus 91 ~---~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 R---QLKVDLAVTRDE 103 (111)
T ss_dssp C---EEEEECCCCCCC
T ss_pred E---EEEEEECCCCcc
Confidence 9 999999987653
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8e-15 Score=115.16 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=69.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+..+|+++|+++|+.||.|.+|.|...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 95 (106)
T 1p27_B 22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 95 (106)
T ss_dssp TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESCHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeE-EEEEECCHHHHHHHHHHhcCCEECCc---EE
Confidence 356666 89999999999999999999999999987542 355 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++.+.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999987653
No 114
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=7.1e-15 Score=119.21 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=70.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|+.||.|+.|.|...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 21 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 94 (126)
T 3ex7_B 21 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 94 (126)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSC-EEEEESSHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 456666 89999999999999999999999999987542 566 99999999999999999999999998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|+|++....
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986553
No 115
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=114.38 Aligned_cols=78 Identities=12% Similarity=0.329 Sum_probs=69.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCee-EEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~-~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
++++|+ |+||+.++|+++|+++|++||.|+ +|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (99)
T 2div_A 8 MAASLW--MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGY-CFVEFADLATAEKCLHKINGKPLPGA---T 81 (99)
T ss_dssp SSSEEE--ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEE-EEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCE-EEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence 467777 899999999999999999999999 99987543 355 99999999999999999999999998 7
Q ss_pred ----EEEEeecCCC
Q 019494 208 ----LHISYSRHTD 217 (340)
Q Consensus 208 ----l~v~~ak~~~ 217 (340)
|+|+|++...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999987654
No 116
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=7.3e-15 Score=115.41 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCee---CCCCc
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGF 205 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i---~~~~~ 205 (340)
++++|+ |.||+.++|+++|+++|++||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..+ .++
T Consensus 12 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g~-- 86 (106)
T 2dgp_A 12 DAIKLF--IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC-AFLTYCERESALKAQSALHEQKTLPGMNR-- 86 (106)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSE-EEEEESSHHHHHHHHHHHTTTCCCTTCSS--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhcCCcccCCCCc--
Confidence 456666 8999999999999999999999999998753 3465 99999999999999999999987 677
Q ss_pred cEEEEEeecCCC
Q 019494 206 CKLHISYSRHTD 217 (340)
Q Consensus 206 ~~l~v~~ak~~~ 217 (340)
.|+|.|++...
T Consensus 87 -~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 -PIQVKPADSES 97 (106)
T ss_dssp -CCEEEECCCCS
T ss_pred -eEEEEECCccc
Confidence 99999988755
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=115.79 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=69.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+..+|+++|+++|++||.|.+|+|...+ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 25 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~i~g~---~l 98 (108)
T 2jrs_A 25 GPMRLY--VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY-GFITFSDSECAKKALEQLNGFELAGR---PM 98 (108)
T ss_dssp SCEEEE--EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 456666 89999999999999999999999999987542 355 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++.+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998754
No 118
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.6e-15 Score=115.91 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=63.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
|+|+||+.++|+++|+++|+.|| .|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.+
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V~~ 79 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP 79 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEE-EEECC-CHHHHHHHHHHGGGSCSSSC---CCEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcE-EEEEECCHHHHHHHHHHcCCCeeCCE---EEEEEE
Confidence 55999999999999999999999 99999987542 455 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 019494 213 SRHTD 217 (340)
Q Consensus 213 ak~~~ 217 (340)
+++..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 119
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.8e-15 Score=118.92 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee-----CCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI-----YDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i-----~~~~~~~l 208 (340)
+++.|+|..+||++++|+++|+++|++||+|++|+|... +|| |||+|++.++|.+|++.|||..| .+. .|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~---~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKI---TL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSC-EEEEESSHHHHHHHHHHTTTCEEECTTSCEE---EC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCEEccccCCCc---EE
Confidence 467777222679999999999999999999999988764 576 99999999999999999999988 344 89
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
.|.|++...
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999987543
No 120
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=6.6e-15 Score=120.39 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=70.4
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.++++|+ |.||+.++|+++|+++|++||+|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 44 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~lng~~i~g~---~ 117 (129)
T 2kxn_B 44 DPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---R 117 (129)
T ss_dssp CCSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCE-EEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3466777 8999999999999999999999999998753 3565 99999999999999999999999999 9
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
|+|+|++.+.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999988754
No 121
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=115.44 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.+.++|+ |.||+.++|+++|+++|++||.|++|+|... .+|+ |||+|.+.++|.+|++.||+ .|.++ .
T Consensus 15 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~~~~-~~~g~---~ 87 (116)
T 2cqd_A 15 TTFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR---K 87 (116)
T ss_dssp CSSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhCCC-cCCCE---E
Confidence 3466777 8999999999999999999999999998754 2465 99999999999999999999 89988 9
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
|+|+|++...
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999987654
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=1.2e-14 Score=122.33 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=69.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|++||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 38 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 111 (156)
T 1h2v_Z 38 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II 111 (156)
T ss_dssp TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 466777 89999999999999999999999999987543 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 123
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=113.93 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=65.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcC-CeeCCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng-~~i~~~~~~~l~v~ 211 (340)
+++.|+ |+||+.++|+++|+++|++||. |..+.+.. +|+ |||+|.+.++|.+|++.||| ..|.++ .|+|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~--~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~ 78 (93)
T 2cqh_A 7 GMNKLY--IGNLSPAVTADDLRQLFGDRKLPLAGQVLLK--SGY-AFVDYPDQNWAIRAIETLSGKVELHGK---IMEVD 78 (93)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHTTCCCSSCEEEE--TTE-EEECCSCHHHHHHHHHHHTTTCEETTE---ECEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEEcC--CCE-EEEEECCHHHHHHHHHHccCCeeECCE---EEEEE
Confidence 355666 8999999999999999999999 55555533 465 99999999999999999999 999998 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|++.+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998754
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=113.05 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=66.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE-cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~-~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+++|+ |+||+..+|+++|+++|+.||.|. +++. .+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+++
T Consensus 19 ~~~l~--V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 91 (97)
T 2e5j_A 19 AADVY--VGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRR-AFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVALA 91 (97)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTE-EEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEEC
T ss_pred CCEEE--EeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEc
Confidence 56666 899999999999999999999996 4543 445676 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 125
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=120.34 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=69.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
..++|+ |+||+.++|+++|+++|+.||+|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 41 ~~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 114 (139)
T 1u6f_A 41 VLRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---RL 114 (139)
T ss_dssp TTSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 356777 89999999999999999999999999987542 455 99999999999999999999999999 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|+|++...
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999988754
No 126
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=2.6e-15 Score=117.13 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=68.3
Q ss_pred CcEEEEEeecCCC------CCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCC-
Q 019494 135 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYD- 202 (340)
Q Consensus 135 s~vl~v~v~nl~~------~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~- 202 (340)
+++|+ |+|||. ++++++|+++|++||.|.+|+|... ++|+ |||+|.+.++|.+|++.|||..|.+
T Consensus 6 ~~~vf--V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIV--VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGF-LFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEE--EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEE--EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHhCCcccCCC
Confidence 56766 899999 9999999999999999999998643 3576 9999999999999999999999999
Q ss_pred CCccEEEEEeecCC
Q 019494 203 GGFCKLHISYSRHT 216 (340)
Q Consensus 203 ~~~~~l~v~~ak~~ 216 (340)
+ .|+|.++++.
T Consensus 83 r---~l~V~~a~~~ 93 (100)
T 3ns6_A 83 H---RLFLYTMKDV 93 (100)
T ss_dssp C---BCEEEESHHH
T ss_pred e---EEEEEECchh
Confidence 8 9999998764
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1.8e-14 Score=116.66 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |+||+..+|+++|+++|++||+|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 34 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 107 (124)
T 2kt5_A 34 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD 107 (124)
T ss_dssp SCEEEE--EESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHcCCCEECCc---EEE
Confidence 356666 8999999999999999999999999998764 3565 99999999999999999999999998 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|+||+....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987554
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6e-15 Score=115.40 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=70.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+..+|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 8 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 81 (104)
T 1p1t_A 8 LRSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALR 81 (104)
T ss_dssp HSCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred ccEEE--EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence 45566 89999999999999999999999999987542 455 99999999999999999999999998 999
Q ss_pred EEeecCCCCc
Q 019494 210 ISYSRHTDLS 219 (340)
Q Consensus 210 v~~ak~~~~~ 219 (340)
|+|++.....
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9999876543
No 129
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=112.49 Aligned_cols=75 Identities=17% Similarity=0.431 Sum_probs=67.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHccc--CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~f--G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
++++|+ |+||+..+|+++|+++|++| |.|.+|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|.
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 84 (99)
T 2cpd_A 14 SVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEVT 84 (99)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred CcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCe-EEEEeCCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence 466777 89999999999999999999 999998875 354 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|+++..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
No 130
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=117.04 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=66.6
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
|...|||++++. +|++|+++|++||+|.+|.++. +.+++||||+|.+.++|++|++.|||..| .|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---------~g 75 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---------MG 75 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 556789999884 4899999999999999998876 33567899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|+++...
T Consensus 76 r~i~V~~a~~~ 86 (110)
T 3s8s_A 76 NIIHAQLDIKG 86 (110)
T ss_dssp EECEEEECSTT
T ss_pred eEEEEEECCCC
Confidence 99999998754
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=1.3e-14 Score=114.98 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=67.2
Q ss_pred CcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 135 SNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 135 s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+++|+ |.||+.. +|+++|+++|++||.|++|.| .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 27 ~~~l~--V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~a 97 (110)
T 1wf1_A 27 NSRVF--IGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGY-AFVQYSNERHARAAVLGENGRVLAGQ---TLDINMA 97 (110)
T ss_dssp SSEEE--ECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTE-EEEECSSSHHHHHHHHHHTTCEETTE---ECCEEES
T ss_pred CcEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEC
Confidence 56666 8999999 999999999999999999999 3465 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+...
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 132
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1e-14 Score=110.63 Aligned_cols=76 Identities=18% Similarity=0.386 Sum_probs=67.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|+.||.|.+|++.... +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 6 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~g~~~~g~---~l~ 78 (89)
T 3ucg_A 6 ARSIY--VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF-AYIEFSDKESVRTSL-ALDESLFRGR---QIK 78 (89)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEE-EEEEESSTHHHHHHG-GGTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHH-hcCCCEECCc---EEE
Confidence 45566 89999999999999999999999999987542 465 999999999999999 9999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.+++...
T Consensus 79 V~~a~~~~ 86 (89)
T 3ucg_A 79 VIPKRTNR 86 (89)
T ss_dssp EEETTTTS
T ss_pred EEEccCCC
Confidence 99987643
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=114.79 Aligned_cols=74 Identities=24% Similarity=0.312 Sum_probs=65.2
Q ss_pred ccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
++|||++++. +|++|+++|++||+|.+|.+.+. ++++|||+|.+.++|++|++.|||..+ .|++|+|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVI---------CGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCS---------SSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeE---------CCcEEEEE
Confidence 3688888874 48999999999999999998875 567899999999999999999999984 69999999
Q ss_pred eccCCc
Q 019494 86 YSAHTD 91 (340)
Q Consensus 86 ~s~~~~ 91 (340)
+++.+.
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 998653
No 134
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=1.5e-14 Score=110.01 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=68.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
++.|+ |+||+..+|+++|+++|++| .|.+|++. +++|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+|++
T Consensus 5 ~~~l~--V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGIL--VKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRT-AFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP 76 (88)
T ss_dssp CCCEE--EESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTE-EEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcE-EEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcC
Confidence 45566 89999999999999999999 99999986 45575 99999999999999999999999998 99999998
Q ss_pred CCCCc
Q 019494 215 HTDLS 219 (340)
Q Consensus 215 ~~~~~ 219 (340)
...+.
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 76654
No 135
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=2.5e-14 Score=112.55 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=67.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|+|.... +| +|||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 28 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 101 (107)
T 3ulh_A 28 TGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG-TADVHFERKADALKAMKQYNGVPLDGR---PMN 101 (107)
T ss_dssp CSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEE-EEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcce-EEEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence 466666 89999999999999999999999999987543 34 499999999999999999999999998 999
Q ss_pred EEeec
Q 019494 210 ISYSR 214 (340)
Q Consensus 210 v~~ak 214 (340)
|+|++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 136
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=4e-15 Score=115.23 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCc--eeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGF--VHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 75 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~--V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 75 (340)
.+.|.-|||+|++. +||+|+++|++||. |.+|++++ +.+++||||+|.+.++|++|++.|||... +-
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~-----~~ 80 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHP-----PL 80 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSS-----CE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCC-----Cc
Confidence 36788899999984 49999999999995 67888776 34677999999999999999999999751 11
Q ss_pred CCCCceEEEeeccC
Q 019494 76 NMGPCTLRITYSAH 89 (340)
Q Consensus 76 ~~~~~~l~v~~s~~ 89 (340)
.+.|++|+|+||+.
T Consensus 81 ~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDGKTIGVDFAKS 94 (95)
T ss_dssp EETTEEEEEEECCC
T ss_pred eECCEEEEEEEccC
Confidence 15799999999875
No 137
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=114.51 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=69.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcc-cCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCe-eCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~-fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~-i~~~~~~~ 207 (340)
++.+|+ |+||+.++|+++|+++|+. ||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||.. |.|+ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~g~---~ 81 (104)
T 2dhg_A 8 PEYSLF--VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGY-GFVKFTDELEQKRALTECQGAVGLGSK---P 81 (104)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHHHTTTCCSSSSS---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHHHccCCcccCCE---e
Confidence 355666 8999999999999999999 9999999987642 455 9999999999999999999999 9998 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.|++.+..
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999876653
No 138
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.55 E-value=8.5e-15 Score=113.07 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=67.6
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
|..+|||++++. +|++|+++|++||+|.+|.+.+. .+++||||+|.+.++|.+|++.|||..| .|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 71 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---------GS 71 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence 567899999984 48999999999999999988762 3467899999999999999999999885 69
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
+.|+|++++.+.
T Consensus 72 ~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 RFLKCGYSSNSD 83 (96)
T ss_dssp EECEEEECSCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999998764
No 139
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=2e-14 Score=114.62 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=69.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC--CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~--~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
++++|+ |+||+..+|+++|+++|+.||.|.+|.|... .+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 80 (115)
T 3lqv_A 7 VNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT-AYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVL 80 (115)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTC-EEEEESSHHHHHHHHHHHTTCBSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 366766 8999999999999999999999999998753 3566 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|+++..
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 997643
No 140
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=110.94 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 74 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---------AG 74 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence 467899999884 48999999999999999998762 3467899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 75 ~~l~V~~a~~~ 85 (95)
T 2dnz_A 75 RPMRVGHVTER 85 (95)
T ss_dssp SCCEEEESSCC
T ss_pred cEEEEEEcccc
Confidence 99999998865
No 141
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=114.92 Aligned_cols=79 Identities=28% Similarity=0.397 Sum_probs=69.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCee--------EEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--------~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
++++|+ |.||+..+|+++|+++|++||.|. +|+|+..+ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeE-EEEEECCHHHHHHHHHHcCCCcc
Confidence 466766 899999999999999999999999 68876542 465 99999999999999999999999
Q ss_pred CCCCccEEEEEeecCCCC
Q 019494 201 YDGGFCKLHISYSRHTDL 218 (340)
Q Consensus 201 ~~~~~~~l~v~~ak~~~~ 218 (340)
.++ .|+|.|++....
T Consensus 91 ~g~---~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGS---KLKVSLARKKPP 105 (113)
T ss_dssp TTE---ECEEECSSCCCC
T ss_pred CCC---EEEEEECCCCCC
Confidence 998 999999887653
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=110.74 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=68.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
+++|+ |+||++++|+++|+++|++||.|++|+ |..++ .|. |||+|.+.++|.+|++.|||..|.|+ .|+|+|
T Consensus 15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~ 88 (96)
T 2e44_A 15 IRKLQ--IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-VNVTYSSKDQARQALDKLNGFQLENF---TLKVAY 88 (96)
T ss_dssp CCCEE--EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCEEE--EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 45566 899999999999999999999999994 66543 344 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 019494 213 SRHTD 217 (340)
Q Consensus 213 ak~~~ 217 (340)
+++++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 143
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=113.12 Aligned_cols=76 Identities=12% Similarity=0.309 Sum_probs=67.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
.++|+ |.||+..+|+++|+++|+.|| |++|.|... .+|+ |||+|.+.++|.+|+ .|||..|.++ .|
T Consensus 15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l 86 (104)
T 1wi8_A 15 PYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---RI 86 (104)
T ss_dssp CEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---EC
T ss_pred CCEEE--EeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeE-EEEEECCHHHHHHHH-hcCCCEeCCc---EE
Confidence 45555 899999999999999999999 999998743 2566 999999999999999 9999999998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++.+..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.7e-14 Score=109.12 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=67.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+|+ ++|+++|+++|++||.|++|.|.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 14 ~~~~l~--V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 84 (97)
T ss_dssp CCSEEE--EECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEECC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEEC
Confidence 466777 7886 899999999999999999999964 4465 99999999999999999999999998 9999999
Q ss_pred cCCCC
Q 019494 214 RHTDL 218 (340)
Q Consensus 214 k~~~~ 218 (340)
+....
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 145
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=109.85 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=64.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..+ .|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 75 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GG 75 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 456789999884 48999999999999999988762 2456899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999998753
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=111.98 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=67.0
Q ss_pred cccccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 5 WPLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 5 ~~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
.+..+|||+++.++|++|+++|++||+|.+|.+.+ .+++|||+|.+.++|.+|++.|||..| .|++|+|
T Consensus 13 ~~~~~l~V~n~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~v 81 (97)
T 1x5p_A 13 RKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKV 81 (97)
T ss_dssp CCCSEEEEECSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEE---------TTEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence 35678999998888999999999999999998853 567899999999999999999999984 6999999
Q ss_pred eeccCC
Q 019494 85 TYSAHT 90 (340)
Q Consensus 85 ~~s~~~ 90 (340)
++++.+
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999865
No 147
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=5.3e-15 Score=113.80 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+.++|+ |.||+..+|+++|+++|++||.|.+++++.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~l 87 (95)
T 2ek1_A 14 GPTVIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (95)
T ss_dssp -CEEEE--EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeE-EEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence 356666 8999999999999999999999987776542 2355 99999999999999999999999998 99
Q ss_pred EEEeecC
Q 019494 209 HISYSRH 215 (340)
Q Consensus 209 ~v~~ak~ 215 (340)
+|++++.
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9998753
No 148
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1e-14 Score=109.76 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=65.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..+ .
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 75 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F 75 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------T
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 3567889999985 48999999999999999988652 3466899999999999999999999985 6
Q ss_pred CceEEEeecc
Q 019494 79 PCTLRITYSA 88 (340)
Q Consensus 79 ~~~l~v~~s~ 88 (340)
|++|+|++++
T Consensus 76 g~~l~v~~ak 85 (85)
T 3mdf_A 76 GRTIRVNLAK 85 (85)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 149
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=113.88 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=68.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCC-eeEEEEEc------CCCCeEEEEEcCChHHHHHHHHHhc--CCeeCCCC
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGG 204 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~-v~~v~i~~------~~~g~~afV~F~~~~~A~~A~~~ln--g~~i~~~~ 204 (340)
+++.|+ |+||+.++|+++|+++|+.||. |+.|.+.. +.+|+ |||+|.+.++|.+|++.|| +..|.|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLF--IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 456666 8999999999999999999998 99999872 34576 9999999999999999996 5899998
Q ss_pred ccEEEEEeecCCCC
Q 019494 205 FCKLHISYSRHTDL 218 (340)
Q Consensus 205 ~~~l~v~~ak~~~~ 218 (340)
.|+|.|+++...
T Consensus 83 --~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 --QIAVDWAEPEID 94 (109)
T ss_dssp --CCEEEESCSSCS
T ss_pred --eEEEEEcCCCCC
Confidence 999999987653
No 150
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=9.5e-15 Score=107.39 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=62.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
|+|+||+.++|+++|+++|++||.|.+|.+...+ +|+ |||+|.+.++|.+|++ |||..|.|+ .|+|.+|
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBE-EEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 5599999999999999999999999999986543 465 9999999999999998 999999999 9999875
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=111.52 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=65.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC--Cce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG--PCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~--~~~ 81 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+. ++||||+|.+.++|++|++.|||..| . +++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~---------~~~g~~ 84 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPL---------GGPDRR 84 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBC---------SSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEe---------CCCCcE
Confidence 567899999884 48999999999999999988763 56899999999999999999999985 5 899
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|+|++.+
T Consensus 85 l~V~~a~~~ 93 (97)
T 1why_A 85 LRVDFAKSG 93 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999865
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=109.44 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=64.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
++.|+ |+||+.++|+++|+++|+.||.|.+| +..+..|.+|||+|.+.++|.+|++ |||..|.|+ .|+|.+++
T Consensus 8 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVF--VSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPRE 80 (94)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSC
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECC
Confidence 45666 89999999999999999999999998 4443333259999999999999999 999999998 99999876
Q ss_pred CCC
Q 019494 215 HTD 217 (340)
Q Consensus 215 ~~~ 217 (340)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 544
No 153
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=1.8e-14 Score=107.84 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=64.6
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
.+|||++++.+ |++|+++|++||+|.+|.+++. .++++|||+|.+.++|++|++.|||..+ .|++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~ 72 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---------NGRP 72 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---------CCcE
Confidence 46888888854 8999999999999999988752 3467899999999999999999999985 6999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|++++.+
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 999999865
No 154
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=114.64 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=68.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|+.||.|++|+|... .+|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 25 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 97 (114)
T 2cq4_A 25 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAI-GLTGQRLLGV---PII 97 (114)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHH-HHTTEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcE-EEEEeCcHHHHHHHH-HcCCCEeCCe---EEE
Confidence 45666 8999999999999999999999999998742 3566 999999999999999 9999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.|++...
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99998654
No 155
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4e-15 Score=112.13 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=64.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+.++|+++|+++|++||.|.+|+|...+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~~ 77 (85)
T 1x4e_A 4 GSSGLY--IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ---MA 77 (85)
T ss_dssp CCCEEE--EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE---SC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhcCCeEeeE---EE
Confidence 466766 89999999999999999999999999987542 565 99999999999999999999999988 77
Q ss_pred EEEee
Q 019494 209 HISYS 213 (340)
Q Consensus 209 ~v~~a 213 (340)
+++++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 66653
No 156
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-15 Score=115.26 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=63.0
Q ss_pred ccccCCCCCCC--HHHHHHhhcccC-ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFG-FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG-~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..|||++++.+ |+||+++|++|| +|.+|++++ +.+++||||+|.+.++|++|++.|++... +.|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~--------~~gr 73 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLN--------ILGQ 73 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEE--------ETTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeE--------ECCE
Confidence 56889888854 999999999999 899998875 34677899999999999999998855332 4799
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|+||+.+
T Consensus 74 ~i~V~~a~~~ 83 (91)
T 2lxi_A 74 KVSMHYSDPK 83 (91)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999865
No 157
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=2.3e-14 Score=114.64 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=63.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE-----EE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----LH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~-----l~ 209 (340)
...|+ |.||++++|+++|+++|++||+|+.|.|..+ |+ |||+|++.++|.+|++.|||..|.++ . |+
T Consensus 16 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIR 87 (115)
T ss_dssp -CCEE--EEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CE-EEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEE
Confidence 34555 8999999999999999999999999999866 65 99999999999999999999999998 6 55
Q ss_pred EEeecC
Q 019494 210 ISYSRH 215 (340)
Q Consensus 210 v~~ak~ 215 (340)
|..+++
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 555444
No 158
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.6e-15 Score=113.06 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=65.9
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.++|+ |.||+..+|+++|+++|+.||.|.+++++.. .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 15 ~~~l~--v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~ 88 (98)
T 2cqp_A 15 PTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KVK 88 (98)
T ss_dssp SEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCeeCCe---EEE
Confidence 45666 8999999999999999999999987665432 2355 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|+|++..
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 159
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=110.82 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=64.9
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++.+ |++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 85 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---------FG 85 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---------TT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---------CC
Confidence 4568899999854 8999999999999999998762 3466899999999999999999999885 69
Q ss_pred ceEEEeecc
Q 019494 80 CTLRITYSA 88 (340)
Q Consensus 80 ~~l~v~~s~ 88 (340)
++|+|+|++
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 160
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=113.88 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=66.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+.+ +..++||||+|.+.++|++|++.||+..| .+++|
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 91 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---------DGYRL 91 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEE
Confidence 456789999884 4899999999999999998876 33567899999999999999999999984 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 92 ~V~~a~~~ 99 (109)
T 1x4a_A 92 RVEFPRSG 99 (109)
T ss_dssp EEECCCCC
T ss_pred EEEEcccC
Confidence 99998865
No 161
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=111.66 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=66.6
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+ +++||||+|.+.++|++|++.|||..| .|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~---------~g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPL---------RGKQL 81 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCB---------TTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEe---------CCceE
Confidence 4567899999984 4899999999999999999875 457899999999999999999999985 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99999865
No 162
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=111.73 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=66.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+.+. ..++||||+|.+.++|++|++.|||..| .|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~ 84 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV---------ATKP 84 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe---------CCcE
Confidence 467899999884 48999999999999999988863 4567899999999999999999999984 6999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|++++.+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2d9p_A 85 LYVALAQRK 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEEeccc
Confidence 999999865
No 163
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-14 Score=116.35 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=66.6
Q ss_pred CCCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 133 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.++++|+ |+||+..+|+++|+++|++||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 61 ~~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 134 (140)
T 2ku7_A 61 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 134 (140)
T ss_dssp SSCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSE-EEEEESCHHHHHHHHHHSTEEEETTE---E
T ss_pred CCCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3466766 8999999999999999999999999998654 3565 99999999999999999999999998 9
Q ss_pred EEEEee
Q 019494 208 LHISYS 213 (340)
Q Consensus 208 l~v~~a 213 (340)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 164
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=4.1e-14 Score=110.62 Aligned_cols=76 Identities=11% Similarity=0.316 Sum_probs=67.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+.++|+++|+++|+.|| |++|+|...+ +|+ |||+|.+.++|.+|+ .|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l 85 (103)
T 2dng_A 14 PPYTAY--VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGF-CYVEFDEVDSLKEAL-TYDGALLGDR---SL 85 (103)
T ss_dssp SCEEEE--EESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHG-GGTTCEETTE---EC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceE-EEEEECCHHHHHHHH-hhCCCeECCe---EE
Confidence 355666 899999999999999999997 9999987543 355 999999999999999 8999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|.|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999988754
No 165
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=117.99 Aligned_cols=78 Identities=13% Similarity=0.328 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--EEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCC----eeCC
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIYD 202 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~----~i~~ 202 (340)
++++|+ |+||++++|+++|+++|++||.|.. |+|+.++ +|| |||+|.+. +|.+|++.|||. .|.|
T Consensus 22 ~~~~lf--V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~-aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTII--LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF-AFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEE--ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC-EEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE-EEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 466766 9999999999999999999999966 8876533 576 99999999 999999999999 9999
Q ss_pred CCccEEEEEeecCCCC
Q 019494 203 GGFCKLHISYSRHTDL 218 (340)
Q Consensus 203 ~~~~~l~v~~ak~~~~ 218 (340)
+ .|+|+|++....
T Consensus 98 r---~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 K---TINVEFAKGSKR 110 (131)
T ss_dssp C---CCCCEECCCSCC
T ss_pred E---EEEEEECCCCCC
Confidence 9 999999987643
No 166
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=117.23 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=65.9
Q ss_pred cccccccCCCCCC--CHHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
.+..+|||++++. +|++|+ ++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--------- 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF--------- 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---------
Confidence 4667899999984 366655 7999999999998865 34677899999999999999999999985
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.|++|+|+|++.+
T Consensus 98 ~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 98 QGNPLVITFSETP 110 (127)
T ss_dssp TTSCCEEEECCCC
T ss_pred CCCEEEEEEccCc
Confidence 5999999999865
No 167
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=9.2e-15 Score=113.92 Aligned_cols=76 Identities=12% Similarity=0.333 Sum_probs=66.4
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC------CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~------~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
..++|+ |+||+.++|+++|+++|+.|| |.+|+|...+ +|+ |||+|.+.++|.+|+ .|||..|.|+ .
T Consensus 18 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~Ai-~l~g~~~~g~---~ 89 (100)
T 2j76_E 18 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNR---R 89 (100)
T ss_dssp --CEEE--ESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSC-EEEEECCHHHHHHHH-HTTTCCBTTB---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeE-EEEEECCHHHHHHHH-hcCCCEECCe---E
Confidence 356666 999999999999999999999 9999987543 576 999999999999999 8999999998 9
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
|+|++++.+.
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999987653
No 168
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=110.96 Aligned_cols=78 Identities=14% Similarity=0.313 Sum_probs=69.0
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+.++|+ |.||+..+|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|++. |+..|.++ .|
T Consensus 15 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g~---~l 87 (105)
T 2dh8_A 15 EIGKLF--VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGF-GFVKFKDPNCVGTVLAS-RPHTLDGR---NI 87 (105)
T ss_dssp SSSEEC--CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSTTHHHHHHHH-CSEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceE-EEEEECCHHHHHHHHHh-CCCeECCE---EE
Confidence 456666 99999999999999999999999999987642 355 99999999999999999 99999998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.+++++..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999887653
No 169
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=111.54 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=66.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++ ..+++||||+|.+.++|++|++.|||..| .|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~ 84 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI---------LGKE 84 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc---------CCCe
Confidence 457889999885 4899999999999999998877 23567899999999999999999999985 6999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|++++.+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2cqi_A 85 VKVNWATTP 93 (103)
T ss_dssp EEEEECCCT
T ss_pred EEEEECCCC
Confidence 999999865
No 170
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-14 Score=111.09 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=67.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||.+++. +|++|+++|+.||+|.+|.+.+ +..++||||+|.+.++|++|++.|||..| .
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 76 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---------Q 76 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---------S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 3567899999884 4899999999999999998876 23567899999999999999999999884 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|++|+|++++.+
T Consensus 77 g~~l~V~~a~~~ 88 (99)
T 1whw_A 77 GRMLHVLPSTIK 88 (99)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEEcCCC
Confidence 999999999865
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=112.95 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=67.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCC-----
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG----- 204 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~----- 204 (340)
+.+.|+ |.||+..+|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.+..
T Consensus 24 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 24 DPTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CTTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356666 89999999999999999999999999987643 355 999999999999999999999994320
Q ss_pred ccEEEEEeecCC
Q 019494 205 FCKLHISYSRHT 216 (340)
Q Consensus 205 ~~~l~v~~ak~~ 216 (340)
...|+|.|+++.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 128999998854
No 172
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=108.26 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+..+|||++++.+ |++|+++|++||+|.+|.+. ++||||+|.+.++|++|++.|||..| .|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKL---------HGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBC---------SSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCcc---------CCcEE
Confidence 35678999998854 89999999999999999887 35899999999999999999999884 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 73 ~v~~a~~~ 80 (90)
T 2dnq_A 73 NVEASKNK 80 (90)
T ss_dssp EEECSSCC
T ss_pred EEEECCCC
Confidence 99998865
No 173
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=4.5e-14 Score=106.80 Aligned_cols=73 Identities=12% Similarity=0.245 Sum_probs=63.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+.++|+ |+||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++ +++..|.|+ .|
T Consensus 10 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i 82 (87)
T 3s7r_A 10 DAGKMF--VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF-GFILFKDAASVEKVLD-QKEHRLDGR---VI 82 (87)
T ss_dssp CTTEEE--EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSTHHHHHHHH-SSCEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccE-EEEEECCHHHHHHHHH-hCCCEECCE---EE
Confidence 466766 89999999999999999999999999987542 355 9999999999999996 488889998 99
Q ss_pred EEEee
Q 019494 209 HISYS 213 (340)
Q Consensus 209 ~v~~a 213 (340)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 174
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=2.5e-14 Score=115.59 Aligned_cols=77 Identities=18% Similarity=0.323 Sum_probs=67.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 36 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 108 (124)
T 2jwn_A 36 KRSVY--VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY-AYIEFAERNSVDAAV-AMDETVFRGR---TIK 108 (124)
T ss_dssp HTEEE--EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE-EEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE-EEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence 45666 89999999999999999999999999987532 455 999999999999999 8999999998 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|+|++....
T Consensus 109 V~~a~~~~~ 117 (124)
T 2jwn_A 109 VLPKRTNMP 117 (124)
T ss_dssp EEESSCCCS
T ss_pred EEECCCCCC
Confidence 999886543
No 175
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=113.53 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEc-CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~-~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+.++|+++|+++|+.||.| ..+.+.. +.+|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 24 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 97 (115)
T 2cpx_A 24 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL 97 (115)
T ss_dssp CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 467777 89999999999999999999998 5555553 33576 99999999999999999999999998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 176
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=111.81 Aligned_cols=76 Identities=16% Similarity=0.280 Sum_probs=66.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++.+ |++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 81 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---------DG 81 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---------TS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 4578999998854 8999999999999999998762 3566899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 82 ~~l~v~~a~~~ 92 (102)
T 1x5s_A 82 RQIRVDQAGKS 92 (102)
T ss_dssp CCCEEEEEECC
T ss_pred eEEEEEECCCC
Confidence 99999999865
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=4.4e-14 Score=107.83 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+..+|+ |+||++++|+++|+++|++||.|++|+|..+++|+ |||+|++.++|. .|++..+.++ ...|+|.++
T Consensus 10 ~~~~l~--V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGf-aFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVF--VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF-AFVTFADDKVAQ----SLCGEDLIIK-GISVHISNA 81 (89)
T ss_dssp -CCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSE-EEEEESCHHHHH----HHTTCEEEET-TEEEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCE-EEEEECCHHHHH----HHcCCCcccC-CEEEEEEEc
Confidence 356666 89999999999999999999999999998888887 999999999998 3677766532 239999998
Q ss_pred cCCCC
Q 019494 214 RHTDL 218 (340)
Q Consensus 214 k~~~~ 218 (340)
+++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87543
No 178
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.6e-14 Score=109.38 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=64.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+.++|+++|+++|++||.| ++..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 84 (101)
T 2fc9_A 14 ESKTLV--LSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREIEGR---AIR 84 (101)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSE-EEEECSSHHHHHHHHHHTSSEEETTE---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeE-EEEEECCHHHHHHHHHHhCCCEeCCe---EEE
Confidence 467777 89999999999999999999987 33322 3565 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|+|++...
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99988764
No 179
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=114.15 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=66.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+. .+++||||+|.+.++|++|++.|||..| .|++
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~ 98 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRK 98 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE---------TTEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE---------CCEE
Confidence 456789999885 48999999999999999988762 3567899999999999999999999985 6999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|++++.+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998865
No 180
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=110.58 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=66.1
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||++++. +|+||+++|++||+|.+|.+... ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~ 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---------KEN 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---------SSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---------CCE
Confidence 456889999984 48999999999999999988762 3457899999999999999999999884 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 87 ~l~v~~a~~~ 96 (100)
T 2do4_A 87 IIKVAISNSG 96 (100)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998865
No 181
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=110.39 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=66.9
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 75 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 75 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+. ..++||||+|.+.++|++|++.|||..|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~------- 75 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV------- 75 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee-------
Confidence 3567899999984 48999999999999999988752 2357899999999999999999999985
Q ss_pred CCCCceEEEeeccCC
Q 019494 76 NMGPCTLRITYSAHT 90 (340)
Q Consensus 76 ~~~~~~l~v~~s~~~ 90 (340)
.|++|+|++++.+
T Consensus 76 --~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 76 --DGHKLEVRISERA 88 (98)
T ss_dssp --TTEECEEECSSCS
T ss_pred --CCeEEEEEEccCC
Confidence 6999999998865
No 182
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.9e-14 Score=110.65 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=67.2
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++. ..+++|||+|.+.++|++|++.|||..| .|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~ 84 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRK 84 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE---------TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEE
Confidence 457889999884 48999999999999999998863 3467899999999999999999999985 6999
Q ss_pred EEEeeccCCc
Q 019494 82 LRITYSAHTD 91 (340)
Q Consensus 82 l~v~~s~~~~ 91 (340)
|+|++++.+.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cq3_A 85 IEVNNATARV 94 (103)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEcccCC
Confidence 9999998653
No 183
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=2.5e-14 Score=109.33 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=66.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee--cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~--~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~ 77 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL---------SGRE 77 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---------TTBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCcE
Confidence 457899999985 48999999999999999988762 3467899999999999999999999985 6999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|++++..
T Consensus 78 l~v~~a~~~ 86 (92)
T 2dgv_A 78 IDVRIDRNA 86 (92)
T ss_dssp CCCEECSCC
T ss_pred EEEEEcCCC
Confidence 999998865
No 184
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=111.99 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+++|+ |+||+.++|+++|+++|+.||.|..|.|... .+|+ |||+|.+.++|.+|++ +||..|.|+ .|+|
T Consensus 11 ~~~lf--V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~-aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V 83 (103)
T 1s79_A 11 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI 83 (103)
T ss_dssp GGCEE--EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCE-EEEEESSHHHHHHHHT-SSCCCCTTT---TCEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence 55666 8999999999999999999999999998753 3576 9999999999999999 899999999 9999
Q ss_pred EeecC
Q 019494 211 SYSRH 215 (340)
Q Consensus 211 ~~ak~ 215 (340)
.+++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98765
No 185
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=111.87 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=67.4
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+ +..+++|||+|.+.++|++|++.|||..| .
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---------D 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---------T
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 4567899999985 4899999999999999998876 23467899999999999999999999985 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|++|+|++++..
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2dnm_A 82 GRELRVQVARYG 93 (103)
T ss_dssp TBCCEEEECSSC
T ss_pred CcEEEEEECCcC
Confidence 999999999865
No 186
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=109.43 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=65.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++ +..++||||+|.+.++|++|++ ||+..| .|
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g 78 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---------MG 78 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---------CC
Confidence 457889999884 4899999999999999999876 2356789999999999999998 999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 79 ~~l~V~~a~~~ 89 (99)
T 2dgs_A 79 KKVEVKRAEPR 89 (99)
T ss_dssp CBCEEEECCCC
T ss_pred eEEEEEECCCC
Confidence 99999999865
No 187
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=6.1e-15 Score=132.34 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=67.5
Q ss_pred EEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
|+|+||++++|+++|+++|++|| +|++|+|+..+ +|| |||+|.+.++|.+||+.|||..|.++ .|+|.|
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr---~l~V~~ 146 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP 146 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTB---CCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCE---EeEEEE
Confidence 44999999999999999999999 99999987542 455 99999999999999999999999999 999999
Q ss_pred ecCCCC
Q 019494 213 SRHTDL 218 (340)
Q Consensus 213 ak~~~~ 218 (340)
++...+
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 986643
No 188
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=109.72 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=65.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 84 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DG 84 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 567889999884 48999999999999999988762 3456899999999999999999999885 69
Q ss_pred ceEEEeeccC
Q 019494 80 CTLRITYSAH 89 (340)
Q Consensus 80 ~~l~v~~s~~ 89 (340)
++|+|++++.
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999874
No 189
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=1.3e-14 Score=115.58 Aligned_cols=75 Identities=7% Similarity=-0.032 Sum_probs=65.1
Q ss_pred cccccCCCCCC--CHHHHHHhhcccC-ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG-~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
-.+|||+|++. +|+||+++|++|| +|..+.+..+.+++||||+|.+.++|++|++.|||..| .|++|+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---------~Gr~i~ 98 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF---------RGSVIT 98 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE---------TTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence 35889999884 4899999999999 99999886545667899999999999999999999985 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|++++..
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998743
No 190
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=4.4e-14 Score=115.46 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=66.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++ +..++||||+|.+.++|++|++.|||..| .|
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---------~g 115 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DG 115 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 567899999885 4899999999999999998875 24567899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|+|++.+
T Consensus 116 ~~l~V~~a~~~ 126 (129)
T 2kxn_B 116 RRIRVDFSITK 126 (129)
T ss_dssp SCCEESCCSSS
T ss_pred EEEEEEEecCC
Confidence 99999998865
No 191
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=109.64 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---------YGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---------TTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCC
Confidence 456889999884 48999999999999999988763 2456899999999999999999999985 699
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
+|+|++++.
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999864
No 192
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=110.10 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=64.7
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeE--------EEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHK--------ITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPR 70 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~--------v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~ 70 (340)
.+..+|||++++.+ |+||+++|++||.|.+ |.+... ..+++|||+|.+.++|++|++.|||..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 34567899999854 8999999999999999 877752 3467899999999999999999999984
Q ss_pred cCCCCCCCCceEEEeecc
Q 019494 71 YLLPENMGPCTLRITYSA 88 (340)
Q Consensus 71 ~~~~~~~~~~~l~v~~s~ 88 (340)
.|++|+|++++
T Consensus 89 -------~g~~l~V~~A~ 99 (99)
T 2la6_A 89 -------SGNPIKVSFAT 99 (99)
T ss_dssp -------SSSBCEEEECC
T ss_pred -------CCcEEEEEecC
Confidence 69999999975
No 193
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=110.24 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+||+..+|+++|+++|+.||.|..+..-.+.+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+
T Consensus 15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 88 (96)
T 1fjc_A 15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT 88 (96)
T ss_dssp GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEc
Confidence 466777 89999999999999999999998877211223465 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+...
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 194
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=5.1e-14 Score=111.55 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=66.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+.++|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.+ +..|.|+ .|
T Consensus 24 ~~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-afV~f~~~~~A~~Ai~~~-~~~l~g~---~l 96 (109)
T 2rs2_A 24 SGCKMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQS-RHELDSK---TI 96 (109)
T ss_dssp --CCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTC-EEEEESSHHHHHHHHHSS-CEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcE-EEEEECCHHHHHHHHHHC-CCcCCCE---EE
Confidence 355666 89999999999999999999999999987542 566 999999999999999986 5889998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.+++....
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999887653
No 195
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=4.9e-14 Score=110.44 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=65.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC-
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP- 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~- 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+. ..++||||+|.+.++|++|++.|||..+. ++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------gg~ 85 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--------PGA 85 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC--------TTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC--------CCC
Confidence 457899999885 48999999999999999988863 23578999999999999999999999862 23
Q ss_pred -ceEEEeeccCC
Q 019494 80 -CTLRITYSAHT 90 (340)
Q Consensus 80 -~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 86 ~~~l~V~~a~~~ 97 (105)
T 2dnh_A 86 SSSLVVKFADTD 97 (105)
T ss_dssp SSCCEEEESCSS
T ss_pred CccEEEEECccC
Confidence 99999999865
No 196
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=111.46 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=66.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 84 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---------DH 84 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---------CC
Confidence 457789999884 48999999999999999988762 3456899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 85 ~~l~v~~a~~~ 95 (103)
T 2cq0_A 85 LILNVEWAKPS 95 (103)
T ss_dssp EECEEEESSCC
T ss_pred cEEEEEECCCC
Confidence 99999998865
No 197
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=121.27 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=68.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccC--CeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG--~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
.+.|+ |+||++++|+++|+++|+.|| .|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 55 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr---~ 128 (156)
T 3n9u_C 55 RAAVY--VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGE---K 128 (156)
T ss_dssp -CEEE--EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence 45555 999999999999999999999 99999987542 455 99999999999999999999999999 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.+++.+.+
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999976543
No 198
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=2.7e-14 Score=113.96 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=66.1
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++.+ |++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 94 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---------GM 94 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 4468899998854 8999999999999999988762 3456899999999999999999999885 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 95 ~~l~V~~a~~~ 105 (115)
T 2cpz_A 95 KRLKVQLKRSK 105 (115)
T ss_dssp EECEEECCCCS
T ss_pred EEEEEEEcCCC
Confidence 99999999865
No 199
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.8e-14 Score=110.29 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=66.4
Q ss_pred cccccccCCCCCCC--HHHHH----HhhcccCceeEEEEeee-cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~~-~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
....+|||++++.+ |++|+ ++|++||+|.+|.+... ..++||||+|.+.++|++|++.|||..|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~--------- 77 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI--------- 77 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE---------
Confidence 34578999999854 89999 99999999999998852 2266899999999999999999999985
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.|++|+|++++..
T Consensus 78 ~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 78 GSKKILVSLATGA 90 (96)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEEcCCC
Confidence 6999999998754
No 200
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=107.56 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeeec-----CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~-----~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
..+|||++++.+ |++|+++|++||+|.+|.+.... .+++|||+|.+.++|++|++.|||..| .|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 74 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---------DG 74 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---------CC
Confidence 467899998854 89999999999999999886522 567899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|+++...
T Consensus 75 ~~l~v~~a~~~ 85 (88)
T 4a8x_A 75 QEITATAVLAP 85 (88)
T ss_dssp EECEEEEECCC
T ss_pred eEEEEEECCCC
Confidence 99999998753
No 201
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=113.21 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=65.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
....|||+|++. +|++|+++|++||.|.+|.+.+ ++++|||+|.+.++|++|++.|||..| .|++|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKF---------HHVPLY 77 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBS---------SSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEE---------CCeEEE
Confidence 456789999884 4899999999999999998875 456899999999999999999999985 699999
Q ss_pred EeeccCCc
Q 019494 84 ITYSAHTD 91 (340)
Q Consensus 84 v~~s~~~~ 91 (340)
|+|++...
T Consensus 78 V~~a~~~~ 85 (111)
T 1whx_A 78 LEWAPIGV 85 (111)
T ss_dssp EEEEETTT
T ss_pred EEECCCCc
Confidence 99998653
No 202
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=111.02 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=66.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 84 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---------YG 84 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence 457889999884 48999999999999999988762 3566899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 85 ~~l~v~~a~~~ 95 (105)
T 1x5u_A 85 KPIRVNKASAH 95 (105)
T ss_dssp CBCEEEETTTT
T ss_pred eEEEEEECCCC
Confidence 99999999865
No 203
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=8.4e-15 Score=111.59 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=63.3
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeec
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 214 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak 214 (340)
|+|+||+.++|+++|+++|++||.|++|++..+ ++|+ |||+|.+.+ |.+|++.|||..|.|+ .|+|++|+
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~~a~ 78 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGF-GFVEMQEES-VSEAIAKLDNTDFMGR---TIRVTEAN 78 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEE-EEEEECTTH-HHHHHHTSCSSCCSSS---SCSEEEC-
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceE-EEEEECCHH-HHHHHHHhCCCEECCe---EEEEEEcC
Confidence 459999999999999999999999999998753 2565 999999999 9999999999999999 99999987
Q ss_pred CCCC
Q 019494 215 HTDL 218 (340)
Q Consensus 215 ~~~~ 218 (340)
....
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 204
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4e-14 Score=114.42 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=66.8
Q ss_pred ccccccCCCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 6 PLSRKYLQWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 6 ~~~~~~l~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
+..+|||+++.++|++|+++|++||+|.+|.+.+ +++||||+|.+.++|.+|++.|||..| .|++|+|+
T Consensus 38 ~~~~lfVgnl~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~---------~g~~l~V~ 106 (121)
T 2bz2_A 38 KGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKVN 106 (121)
T ss_dssp CCCEEEEECSSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBC---------SSCBCEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEE
Confidence 5678999998888999999999999999998863 567899999999999999999999984 69999999
Q ss_pred eccCC
Q 019494 86 YSAHT 90 (340)
Q Consensus 86 ~s~~~ 90 (340)
+++.+
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99865
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=107.45 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=63.3
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCCCCceE
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~~~~~l 82 (340)
+..+|||++++.+ |++|+++|++||+|.+|.+.+ ++++|||+|.+.++|.+|++.| +|..+ .|++|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~---------~g~~l 79 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIV---------NGRRL 79 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEE---------TTEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeE---------CCCEE
Confidence 4568899998854 899999999999999999886 4568999999999999999999 88774 69999
Q ss_pred EEeecc
Q 019494 83 RITYSA 88 (340)
Q Consensus 83 ~v~~s~ 88 (340)
+|+|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999975
No 206
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=110.91 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=66.5
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEE-EEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v-~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
+..+|||++++. +|++|+++|++||+|.+| .+++ +..++||||+|.+.++|++|++.|||..| .
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 74 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---------C 74 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---------T
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------C
Confidence 567899999985 489999999999999999 7765 23567899999999999999999999985 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|++|+|++++.+
T Consensus 75 g~~l~v~~a~~~ 86 (96)
T 1x5t_A 75 NRPITVSYAFKK 86 (96)
T ss_dssp TEECEEEESCCC
T ss_pred CEEEEEEEeccc
Confidence 999999999865
No 207
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=111.94 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=66.1
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+. ..++||||+|.+.++|.+|++.|||..| .|
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---------~g 95 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---------AG 95 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 456789999884 48999999999999999988763 2456899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 99999998854
No 208
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.5e-14 Score=110.83 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=65.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||+|.+|.+.+. .++++|||+|.+.++|++|++.|||..| .|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 92 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MG 92 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---------CC
Confidence 446799999984 48999999999999999988762 3467899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 93 ~~l~V~~a~~~ 103 (106)
T 1p27_B 93 QPISVDWCFVR 103 (106)
T ss_dssp SBCEEEESEES
T ss_pred cEEEEEeecCC
Confidence 99999998754
No 209
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.2e-14 Score=111.68 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=64.1
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
..+|||++++. +|++|+++|++||+|.+|.+.+ +++||||+|.+.++|.+|++.|||..| .|++|+|
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V 95 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPF---------QGRNLRT 95 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEE
Confidence 46789999885 4899999999999999999874 567899999999999999999999984 6999999
Q ss_pred eeccC
Q 019494 85 TYSAH 89 (340)
Q Consensus 85 ~~s~~ 89 (340)
+|++.
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 210
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.3e-14 Score=104.82 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=62.5
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
|+|+||+.++|+++|+++|++||.|.+|.+..++ +|+ |||+|.+.++|.+|++.++ ..+.|+ .|+|++|
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCce-EEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEec
Confidence 4599999999999999999999999999987643 465 9999999999999999999 999998 9999876
No 211
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=6.1e-14 Score=108.76 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=65.5
Q ss_pred ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+..+|||++++. +|++|+++|++||+|.+|.+. ++||||+|.+.++|.+|++.|||..+ .|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMN---------FGK 85 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEE---------TTE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCE
Confidence 45678899999885 499999999999999999883 46899999999999999999999884 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 212
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=111.61 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=67.4
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||.+++. +|++|+++|++||+|.+|.+++ +..++||||+|.+.++|++|++.|||..| .
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~ 80 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------F 80 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---------T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 3567889999884 4899999999999999998865 23567899999999999999999999885 6
Q ss_pred CceEEEeeccCCc
Q 019494 79 PCTLRITYSAHTD 91 (340)
Q Consensus 79 ~~~l~v~~s~~~~ 91 (340)
|++|+|++++.+.
T Consensus 81 g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 81 GRTIRVNLAKPMR 93 (102)
T ss_dssp TEEEEEEECCCCC
T ss_pred CcEEEEEeCCCCC
Confidence 9999999998653
No 213
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=109.95 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=66.7
Q ss_pred CcEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEc---CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 135 SNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFD---KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 135 s~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~---~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
+++|+ |+||+..+ |+++|+++|++||.|.+|.|.+ +++|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 15 ~~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~~~g~-- 89 (105)
T 2nlw_A 15 DSVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ-- 89 (105)
T ss_dssp CSEEE--EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCE-EEEEECSSSHHHHHHHHCSSEECSTT--
T ss_pred CCEEE--EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeE-EEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 56666 89999999 7899999999999999999874 23576 99999999999999999999999884
Q ss_pred cEEEEEeecCC
Q 019494 206 CKLHISYSRHT 216 (340)
Q Consensus 206 ~~l~v~~ak~~ 216 (340)
+.|+|++++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 38999998643
No 214
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.2e-14 Score=110.99 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=68.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.++|+ |.||+.++|+++|+++|+.||.|++|.|...+ +|+ |||+|.+.++|.+|++. |+..|.++ .|+
T Consensus 27 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~ 99 (116)
T 1x4b_A 27 FRKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMAA-RPHSIDGR---VVE 99 (116)
T ss_dssp HTEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCce-EEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence 45666 89999999999999999999999999987642 465 99999999999999998 99999998 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|.+++.+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999887653
No 215
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=109.05 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=64.2
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 84 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v 84 (340)
..+|||++++. +|++|+++|++||.|. +.++....++||||+|.+.++|++|++.|||..| .|++|+|
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V 88 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---------GTDTLRV 88 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS---------SSSCCEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEE
Confidence 56889999884 4899999999999996 5555556677999999999999999999999985 6999999
Q ss_pred eeccCC
Q 019494 85 TYSAHT 90 (340)
Q Consensus 85 ~~s~~~ 90 (340)
++++.+
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998864
No 216
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=2.7e-14 Score=114.39 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=64.1
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |+||+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g 109 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---------GT 109 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 3567899998854 8999999999999999998752 3467899999999999999999999885 69
Q ss_pred ceEEEeecc
Q 019494 80 CTLRITYSA 88 (340)
Q Consensus 80 ~~l~v~~s~ 88 (340)
++|+|+|++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999975
No 217
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.48 E-value=5.5e-14 Score=112.07 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=66.2
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||.|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 84 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GG 84 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---------TT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 456789999884 48999999999999999988763 2356899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|.|++.+
T Consensus 85 ~~l~V~~a~~~ 95 (115)
T 2dgo_A 85 RQIRTNWATRK 95 (115)
T ss_dssp EECEEEESSCC
T ss_pred EEEEEEEccCC
Confidence 99999999865
No 218
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=109.65 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=66.2
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHh-cCCCCCccCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENM 77 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~l-ng~~i~~~~~~~~~ 77 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.| ||..|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--------- 84 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--------- 84 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---------
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---------
Confidence 457889999885 48999999999999999988753 24678999999999999999999 89884
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.|++|+|++++.+
T Consensus 85 ~g~~l~v~~a~~~ 97 (107)
T 2cph_A 85 YGRRLVLEWADSE 97 (107)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCCEEEEEeCCCC
Confidence 6999999999865
No 219
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=111.69 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=67.6
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---------HG 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---------SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 3457899999984 48999999999999999988862 3557899999999999999999999984 69
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
++|+|++++...
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 999999998653
No 220
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.4e-14 Score=109.25 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred cccCCCCCC--CHHHHHHhhcccC--ceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 9 RKYLQWQLS--ASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 9 ~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.|||++++. +|++|+++|++|| +|.+|.++.. .+++||||+|.+.++|++|++.|||..| .|+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---------~gr 73 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------HGQ 73 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---------SSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---------CCE
Confidence 478888874 4899999999999 9999988762 3567899999999999999999999984 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|.+++..
T Consensus 74 ~i~V~~~~~~ 83 (90)
T 3p5t_L 74 NPVVTPSNKL 83 (90)
T ss_dssp CCEECCC---
T ss_pred EEEEEECCCC
Confidence 9999998754
No 221
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=5.2e-14 Score=110.47 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=66.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++ +..++||||+|.+.++|++|++.|||..+.. ..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~------~~g 85 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP------GMN 85 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT------TCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC------CCC
Confidence 456789999985 4899999999999999998876 2356789999999999999999999987520 268
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999998865
No 222
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=5.9e-14 Score=110.34 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=65.7
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+..+|||.+++. +|++|+++|+.||+|.+|.++.. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---------DG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 4567899999985 48999999999999999988762 3456899999999999999999999985 69
Q ss_pred ceEEEeecc
Q 019494 80 CTLRITYSA 88 (340)
Q Consensus 80 ~~l~v~~s~ 88 (340)
+.|+|++++
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999975
No 223
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.3e-13 Score=108.63 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCcEEEEEeecCCC-----CCCHHHHHHHHcccCCeeEEEEEcC------CCCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494 133 PESNVLLASIENMQY-----AVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIY 201 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~-----~vt~~~L~~~F~~fG~v~~v~i~~~------~~g~~afV~F~~~~~A~~A~~~lng~~i~ 201 (340)
.++++|+ +.||.. +-++++|+++|++||+|++|+|... .+|+ |||+|.+.++|.+|++.|||..+.
T Consensus 6 ~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~-~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR-IFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE-EEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE-EEEEECCHHHHHHHHHHHCCCEEC
Confidence 4588888 778852 2378999999999999999998753 3576 999999999999999999999999
Q ss_pred CCCccEEEEEeecCCC
Q 019494 202 DGGFCKLHISYSRHTD 217 (340)
Q Consensus 202 ~~~~~~l~v~~ak~~~ 217 (340)
|+ .|+|.|++...
T Consensus 83 Gr---~i~v~~a~~~~ 95 (105)
T 2pe8_A 83 GR---VVKACFYNLDK 95 (105)
T ss_dssp TE---ECEEEECCHHH
T ss_pred Cc---EEEEEEcCHHH
Confidence 99 99999997644
No 224
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=9.1e-14 Score=108.69 Aligned_cols=75 Identities=15% Similarity=0.323 Sum_probs=66.1
Q ss_pred ccccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..+..+|||.+++. +|++|+++|++||+|.+|.+++ +||||+|.+.++|++|++.|||..| .+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~ 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDL---------EGEN 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCcc---------CCCE
Confidence 45678899999984 4899999999999999998864 3799999999999999999999984 6999
Q ss_pred EEEeeccCCc
Q 019494 82 LRITYSAHTD 91 (340)
Q Consensus 82 l~v~~s~~~~ 91 (340)
|+|++++.+.
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999998653
No 225
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=3.7e-14 Score=110.55 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=65.2
Q ss_pred cccccCCCCCC------C--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494 7 LSRKYLQWQLS------A--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 74 (340)
Q Consensus 7 ~~~~~l~~~~~------~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~ 74 (340)
.+.|||++++. + |++|+++|++||+|.+|.++. +.+++||||+|.+.++|.+|++.|||..|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~------ 79 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL------ 79 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS------
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc------
Confidence 45689999988 5 899999999999999998875 23567899999999999999999999985
Q ss_pred CCCCC-ceEEEeeccCC
Q 019494 75 ENMGP-CTLRITYSAHT 90 (340)
Q Consensus 75 ~~~~~-~~l~v~~s~~~ 90 (340)
.| ++|+|++++..
T Consensus 80 ---~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 ---DLKHRLFLYTMKDV 93 (100)
T ss_dssp ---SSSCBCEEEESHHH
T ss_pred ---CCCeEEEEEECchh
Confidence 57 99999998743
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=112.75 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=66.3
Q ss_pred cccccccCCCCCCC--HHHHH---HhhcccCceeEEEEeee-------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccC
Q 019494 5 WPLSRKYLQWQLSA--SGERA---HVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYL 72 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~---~lF~~fG~V~~v~~~~~-------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~ 72 (340)
.+..+|||++++.+ |+||+ ++|++||+|.+|.+.+. ..++||||+|.+.++|++|++.|||..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---- 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---- 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE----
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE----
Confidence 35568899888743 79999 99999999999998762 2336899999999999999999999985
Q ss_pred CCCCCCCceEEEeeccCCc
Q 019494 73 LPENMGPCTLRITYSAHTD 91 (340)
Q Consensus 73 ~~~~~~~~~l~v~~s~~~~ 91 (340)
.|++|+|++++.+.
T Consensus 89 -----~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 -----DGRTLKASLGTTKY 102 (111)
T ss_dssp -----TTEEEEEESCCCCS
T ss_pred -----CCEEEEEEeccccc
Confidence 69999999998663
No 227
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.4e-14 Score=111.04 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=66.7
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+..+|||.+++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|||..| .|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---------FD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 4567899999985 48999999999999999988763 2356899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++..
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99999998754
No 228
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-13 Score=102.95 Aligned_cols=75 Identities=7% Similarity=0.130 Sum_probs=66.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
..+|+ |+||+.++|+++|+++|+.| .|.+|+|..+. +|+ |||+|.+.++|.+|++ |||..|.|+ .|+|
T Consensus 10 ~~~l~--v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~g~~~~gr---~i~v 81 (91)
T 2dgw_A 10 CHTVK--LRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGY-IFVDFSNEEEVKQALK-CNREYMGGR---YIEV 81 (91)
T ss_dssp CCEEE--EECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEE-EEEECSSHHHHHHHHH-SCSEEETTE---EEEE
T ss_pred ccEEE--EECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-hCCceeCCc---EEEE
Confidence 55666 89999999999999999999 99999987643 355 9999999999999999 999999999 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
.+++.+.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987653
No 229
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.9e-14 Score=109.82 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=64.4
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC----
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP---- 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~---- 79 (340)
...+|||.+++.+ |+||+++|++||+|.+|.+++. +||||+|.+.++|++||+.|||..| .+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGE 81 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEE---------ECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCc---------cCCcCc
Confidence 4568899998844 8999999999999999998764 5899999999999999999999985 46
Q ss_pred -ceEEEeeccCC
Q 019494 80 -CTLRITYSAHT 90 (340)
Q Consensus 80 -~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 82 ~~~i~V~~a~~~ 93 (108)
T 1x4c_A 82 TAYIRVKVDGPR 93 (108)
T ss_dssp EEEEEEEESSCC
T ss_pred ceEEEEEeCCCC
Confidence 99999999865
No 230
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.2e-14 Score=107.29 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=64.8
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+ .+|||+|.+.++|++|++.|||..| .|++|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 74 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEF---------QGKRM 74 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCee---------CCcEE
Confidence 3567899999884 4899999999999999999874 3899999999999999999999985 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999865
No 231
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.1e-14 Score=110.05 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=66.2
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||+|.+|.+++. .++++|||+|.+.++|++|++.|||..| .|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---------SG 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---------SS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence 456889999885 48999999999999999988763 2367899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|++++.+
T Consensus 78 ~~l~v~~a~~~ 88 (104)
T 1p1t_A 78 RALRVDNAASE 88 (104)
T ss_dssp SCBEEEETTCT
T ss_pred cEEEEEeCCCc
Confidence 99999999865
No 232
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.6e-13 Score=110.80 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=66.9
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
++++|+ |+|+ ++|+++|+++|++||.|++|.|.. ++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+
T Consensus 38 ~~~~lf--Vgnl--~~te~~L~~~F~~~G~I~~v~i~~-~kg~-aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 108 (121)
T ss_dssp CCCEEE--EECS--SCCHHHHHHHHSTTCCCSCEEEET-TTTE-EEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEEC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHHccCCEEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEe
Confidence 466777 7886 799999999999999999999874 4465 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
+...
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 233
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.2e-14 Score=107.59 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=64.7
Q ss_pred ccccccccCCCCCC---CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 4 IWPLSRKYLQWQLS---ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 4 ~~~~~~~~l~~~~~---~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+..+|||++++. +|++|+++|++||+|.+|.+. ++||||+|.+.++|++|++.|||..+ .|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMN---------FGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSC---------BTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCee---------CCc
Confidence 45778999999885 499999999999999999884 35899999999999999999999984 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 9999999754
No 234
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=4.4e-14 Score=109.01 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCC--HHHHH----HhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 4 IWPLSRKYLQWQLSA--SGERA----HVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~----~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
..+..+|||++++.+ |++|+ ++|++||.|.+|.+.+ +..+++|||+|.+.++|.+|++.|||..|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-------- 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF-------- 76 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--------
Confidence 356788999999854 88999 9999999999998875 23456899999999999999999999885
Q ss_pred CCCceEEEeeccCC
Q 019494 77 MGPCTLRITYSAHT 90 (340)
Q Consensus 77 ~~~~~l~v~~s~~~ 90 (340)
.|++|+|+|++.+
T Consensus 77 -~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 77 -YDKPMRIQYAKTD 89 (97)
T ss_dssp -TTEECEEEECSSC
T ss_pred -CCcEEEEEEccCC
Confidence 6999999999865
No 235
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-14 Score=113.74 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=64.7
Q ss_pred cccccccC--CCCC--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC-CccCCCCCCCC
Q 019494 5 WPLSRKYL--QWQL--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI-PRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l--~~~~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i-~~~~~~~~~~~ 79 (340)
.|...||| ++++ ++|++|+++|++||+|.+|.+.. +++||||+|.+.++|++|++.|||+.+ . ....+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~-----~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD-----DLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEEC-----TTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEcc-----ccCCC
Confidence 35667899 6675 45899999999999999998765 456899999999999999999999975 1 00258
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|.|++..
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 89999998743
No 236
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.47 E-value=8.6e-14 Score=110.13 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=64.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||++++. +|++|+++|++||+|.+|.+. ++||||+|.+.++|++|++.|||..| .|++|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~ 96 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSF---------ANQPLE 96 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence 456889999984 489999999999999999887 46899999999999999999999985 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|+|++.+
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9998864
No 237
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=109.74 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=66.0
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCcee-EEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVH-KITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~-~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
.+..+|||++++.+ |++|+++|++||+|. +|.+++. ..++||||+|.+.++|++|++.|||..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--------- 77 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--------- 77 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---------
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---------
Confidence 35678999999854 999999999999999 9988762 3457899999999999999999999885
Q ss_pred CCce----EEEeeccCC
Q 019494 78 GPCT----LRITYSAHT 90 (340)
Q Consensus 78 ~~~~----l~v~~s~~~ 90 (340)
.|+. |+|+|++..
T Consensus 78 ~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 78 PGATPAKRFKLNYATYS 94 (99)
T ss_dssp SSCSSCEECCEEETTCC
T ss_pred CCCCcceeEEEeecCCC
Confidence 5777 999998855
No 238
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.1e-13 Score=105.49 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=66.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++ ++..|.|+ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~--~~~~~~g~---~l 85 (103)
T 2cqg_A 14 KTSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMS--QRHMIDGR---WC 85 (103)
T ss_dssp CCCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHH--SCEEETTE---EE
T ss_pred CCCEEE--EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccce-EEEEECCHHHHHHHHH--cCCeeCCe---EE
Confidence 356666 89999999999999999999999999987643 355 9999999999999998 57789998 99
Q ss_pred EEEeecCCCC
Q 019494 209 HISYSRHTDL 218 (340)
Q Consensus 209 ~v~~ak~~~~ 218 (340)
+|.|++.+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999887643
No 239
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.9e-14 Score=110.54 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=65.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||++++. +|++|+++|++||+|.+|.+++. ++||||+|.+.++|.+|++.|||..| .|++|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~ 92 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTI---------EGHVVK 92 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEE
Confidence 456899999984 48999999999999999998863 57899999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|.|++.+
T Consensus 93 v~~a~~~ 99 (109)
T 1x4g_A 93 CYWGKES 99 (109)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999865
No 240
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.6e-14 Score=109.77 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=66.9
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhc------CCCCCccC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALD------GRSIPRYL 72 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~ln------g~~i~~~~ 72 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|.+|++.|| |..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~----- 87 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK----- 87 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-----
Confidence 4567899999884 48999999999999999988752 356789999999999999999999 877
Q ss_pred CCCCCCCceEEEeeccCC
Q 019494 73 LPENMGPCTLRITYSAHT 90 (340)
Q Consensus 73 ~~~~~~~~~l~v~~s~~~ 90 (340)
+.|++|+|++++.+
T Consensus 88 ----~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 88 ----LDGRQLKVDLAVTR 101 (111)
T ss_dssp ----SSSCEEEEECCCCC
T ss_pred ----EcCEEEEEEECCCC
Confidence 46999999998865
No 241
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=8.2e-14 Score=110.16 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=65.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||+|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..| .|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 95 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MG 95 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 456789999984 48999999999999999988752 3467899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 96 ~~l~V~~a~~~ 106 (110)
T 1oo0_B 96 QTIQVDWCFVK 106 (110)
T ss_dssp EECEEEESEES
T ss_pred cEEEEEEcccC
Confidence 99999998754
No 242
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.46 E-value=9.9e-14 Score=114.32 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=66.3
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |+||+++|+.||+|.+|.+++. .+++||||+|.+.++|.+|++.|||..| .|
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 111 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---------LN 111 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 3567999998854 8999999999999999988763 2467899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 112 ~~l~v~~a~~~ 122 (139)
T 1u6f_A 112 KRLKVALAASG 122 (139)
T ss_dssp CEEEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999999865
No 243
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.9e-14 Score=107.37 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=63.7
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||++++.+ |++|+++|++||+|.+|.+... ..++||||+|.+.++|++|++.|||..| .
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---------Q 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---------C
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---------e
Confidence 35678999999854 8999999999999999988762 3467899999999999999999999984 6
Q ss_pred CceEEEeecc
Q 019494 79 PCTLRITYSA 88 (340)
Q Consensus 79 ~~~l~v~~s~ 88 (340)
|+.|++++++
T Consensus 74 g~~~~~~~~~ 83 (85)
T 1x4e_A 74 AQMAKQSGPS 83 (85)
T ss_dssp EESCCSSCCC
T ss_pred eEEEeecCCC
Confidence 8888777654
No 244
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=111.48 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=67.7
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+..+|||++++. +|++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|++|++.|||..| .|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---------SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 4567899999984 48999999999999999988763 3567899999999999999999999884 69
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
++|+|+++....
T Consensus 104 ~~l~V~~a~~~~ 115 (124)
T 2kt5_A 104 RPMDIQLVASQI 115 (124)
T ss_dssp CEEEEEEECCTT
T ss_pred cEEEEEEeCCCC
Confidence 999999998653
No 245
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=105.86 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=64.0
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+ ++|||+|.+.++|++|++.|||..| .|++|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~ 74 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEV---------KGKRIN 74 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEE---------TTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEE
Confidence 457889999884 4899999999999999999874 3799999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|++++..
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999865
No 246
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=2.4e-13 Score=121.52 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=73.8
Q ss_pred CCCcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 133 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
+++++|+ |+||+. ++|+++|+++|+.||.|++|+|..+++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.
T Consensus 32 ~~~~~l~--V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v~ 105 (229)
T 2adc_A 32 AGNSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRIT 105 (229)
T ss_dssp CCCSEEE--EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCC-EEEEESCHHHHHHHHHHHTTCBCSSS---BCEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEE
Confidence 4577877 889999 99999999999999999999998877786 99999999999999999999999998 99999
Q ss_pred eecCCCCc
Q 019494 212 YSRHTDLS 219 (340)
Q Consensus 212 ~ak~~~~~ 219 (340)
|++.....
T Consensus 106 ~a~~~~~~ 113 (229)
T 2adc_A 106 LSKHQNVQ 113 (229)
T ss_dssp CCSCCCCC
T ss_pred EecCcccc
Confidence 99876543
No 247
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.46 E-value=5.1e-14 Score=103.45 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=59.4
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+|||++++.+ |++|+++|++||+|.+|.+.+. .++++|||+|.+.++|++|++ |||..| .|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---------~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---------NNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---------SSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---------CCEEE
Confidence 5788888744 8999999999999999988752 346789999999999999997 999884 69999
Q ss_pred EEeec
Q 019494 83 RITYS 87 (340)
Q Consensus 83 ~v~~s 87 (340)
+|+++
T Consensus 71 ~v~~A 75 (75)
T 2mss_A 71 ECKKA 75 (75)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99875
No 248
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.4e-13 Score=106.59 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=66.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeE-EEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~-v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
..+|+ |+||++++|+++|+++|+.||.|.+ |+|..+ .+|+ |||+|.+.++|.+|++. |+..|.++ .|+
T Consensus 15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~-afV~F~~~~~a~~A~~~-~~~~~~gr---~i~ 87 (104)
T 1wg5_A 15 DGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALKK-HKERIGHR---YIE 87 (104)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHTT-TTCCSSSS---CCE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CcchhCCc---EEE
Confidence 55666 8999999999999999999999988 776532 2576 99999999999999998 99999999 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|.++.....
T Consensus 88 v~~~~~~~~ 96 (104)
T 1wg5_A 88 IFKSSRAEV 96 (104)
T ss_dssp EEEECTTTS
T ss_pred EEECCHHHH
Confidence 998876554
No 249
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=1.2e-13 Score=104.72 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=64.4
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++. +|++|+++|+.||+|.+|.+... .++++|||+|.+.++|++|+ .|||..| .|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---------~g~ 75 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---------RGR 75 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---------TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---------CCc
Confidence 46789999885 48999999999999999988752 34678999999999999999 9999985 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|++++.+
T Consensus 76 ~l~V~~a~~~ 85 (89)
T 3ucg_A 76 QIKVIPKRTN 85 (89)
T ss_dssp ECEEEETTTT
T ss_pred EEEEEEccCC
Confidence 9999998754
No 250
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=4.9e-12 Score=116.02 Aligned_cols=80 Identities=25% Similarity=0.456 Sum_probs=70.7
Q ss_pred CCCcEEEEEeecCCCCCCHHHHH----HHHcccCCeeEEEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 133 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt~~~L~----~~F~~fG~v~~v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
.++++|+ |+||+.++|+++|+ ++|++||.|++|++.+ +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 7 ~~~~~l~--V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~--- 80 (282)
T 3pgw_A 7 RPNHTIY--INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--- 80 (282)
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCc---
Confidence 3477777 89999999999966 8999999999999875 33565 99999999999999999999999998
Q ss_pred EEEEEeecCCCC
Q 019494 207 KLHISYSRHTDL 218 (340)
Q Consensus 207 ~l~v~~ak~~~~ 218 (340)
.|+|.|++....
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999987654
No 251
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.3e-14 Score=105.68 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=62.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee--CCCCccEEEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHIS 211 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i--~~~~~~~l~v~ 211 (340)
+++.|+ |+||+.++|+++|+++|++||.|++|+|..+++|+ |||+|++.++|.+| ++..+ .+. .|+|.
T Consensus 4 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~~----~~~~~~~~g~---~l~v~ 73 (88)
T 1wf0_A 4 GSSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQSL----CGEDLIIKGI---SVHIS 73 (88)
T ss_dssp CCCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHHT----TTCEEEETTE---EEEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCE-EEEEECCHHHHHHH----hcCCceeCCE---EEEEE
Confidence 356666 89999999999999999999999999998777786 99999999999754 55544 565 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
+++++.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=109.80 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCe-eEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v-~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
+..+|+ |+||++++|+++|+++|+.||.| ..|+|+.+ .+|+ |||+|.+.++|.+|++. |+..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~~-~~~~~~gr---~i 86 (114)
T 2cpy_A 14 AKVCAH--ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSERL-HRKKLNGR---EA 86 (114)
T ss_dssp CCCEEE--EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGGG-CSEEETTE---EE
T ss_pred CccEEE--EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CCCccCCe---EE
Confidence 356666 89999999999999999999999 78888643 3566 99999999999999987 99999998 99
Q ss_pred EEEeecCCCCc
Q 019494 209 HISYSRHTDLS 219 (340)
Q Consensus 209 ~v~~ak~~~~~ 219 (340)
+|.+++.+...
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2cpy_A 87 FVHVVTLEDMR 97 (114)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999876543
No 253
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=4.8e-14 Score=108.33 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|+||+++|++||.|.++.++. +..+++|||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g 84 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GS 84 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---------CC
Confidence 346889999884 4899999999999998776654 23457899999999999999999999985 69
Q ss_pred ceEEEeeccC
Q 019494 80 CTLRITYSAH 89 (340)
Q Consensus 80 ~~l~v~~s~~ 89 (340)
++|+|++++.
T Consensus 85 r~l~v~~a~s 94 (95)
T 2ek1_A 85 RKVKLSGPSS 94 (95)
T ss_dssp EECEEECCC-
T ss_pred cEEEEEeccC
Confidence 9999998763
No 254
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=2.6e-14 Score=108.85 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=62.5
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+.+|||++++.+ |++|+++|++||+|.+|.+.+ +.++++|||+|.+.+ |.+|++.|||..+ .|+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---------~g~ 70 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---------MGR 70 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---------SSS
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---------CCe
Confidence 467899888744 899999999999999998876 235778999999999 9999999999984 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++|...
T Consensus 71 ~l~V~~a~~~ 80 (90)
T 2ki2_A 71 TIRVTEANPK 80 (90)
T ss_dssp SCSEEEC---
T ss_pred EEEEEEcCCC
Confidence 9999998865
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=2.2e-13 Score=109.46 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=67.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
..+|+ |+||++++|+++|+++|+.||. |+.|+|..++ +|+ |||+|.+.++|.+|++ |||..|.++ .
T Consensus 17 ~~~l~--V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~ 89 (118)
T 2db1_A 17 GYVVK--LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGE-AFVELESEDDVKLALK-KDRESMGHR---Y 89 (118)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEE-EEEEBSSHHHHHHHGG-GTTEEETTE---E
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCeECCe---E
Confidence 55666 8999999999999999999999 8999987543 355 9999999999999999 999999998 9
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
|+|.+++.++
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999997665
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=110.21 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCce----eEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFV----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V----~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||.| ..+.+..+..++||||+|.+.++|++|++.|||..| .|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g 94 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---------YG 94 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CC
Confidence 457899999984 489999999999999 566555556677999999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|+|++.+
T Consensus 95 ~~l~v~~a~~~ 105 (115)
T 2cpx_A 95 KILVIEFGKNK 105 (115)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEccCC
Confidence 99999999865
No 257
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=2.4e-13 Score=117.15 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
++++|+ |.||+..+|+++|+++|+.||.|++|.|... .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 87 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~-afV~F~~~~~A~~Ai~~lng~~l~Gr---~l~ 160 (177)
T 2f3j_A 87 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD 160 (177)
T ss_dssp TCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC-EEEEESCHHHHHHHHHHSTTCBCSSS---BCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEE
Confidence 456666 8999999999999999999999999998753 3465 99999999999999999999999998 999
Q ss_pred EEeecCCCC
Q 019494 210 ISYSRHTDL 218 (340)
Q Consensus 210 v~~ak~~~~ 218 (340)
|.|+.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999987543
No 258
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=108.17 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=66.7
Q ss_pred cccccccCCCCCC--CHHHHHHhhcc-cCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCC-CCccCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSA-FGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRS-IPRYLLPENM 77 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~-fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~-i~~~~~~~~~ 77 (340)
.+..+|||++++. +|++|+++|++ ||+|.+|.+++. .+++||||+|.+.++|.+|++.|||.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL--------- 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---------
Confidence 3567899999885 48999999999 999999988762 346789999999999999999999988 5
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.|++|+|++++.+
T Consensus 78 ~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 78 GSKPVRLSVAIPK 90 (104)
T ss_dssp SSSCCCCCBCCCC
T ss_pred CCEeEEEEEccCC
Confidence 5999999998755
No 259
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=103.14 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.2
Q ss_pred cEEEEEeecCCCCC------CHHHHHHHHcccCCeeEEEEEcC---CCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 136 NVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 136 ~vl~v~v~nl~~~v------t~~~L~~~F~~fG~v~~v~i~~~---~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
++|+ |+|||..+ |+++|+++|++||.|.+|+|.+. ++|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 2 ~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEE--EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCE-EEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEE--EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEE-EEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3455 89999999 77999999999999999998742 3575 99999999999999999999999875
No 260
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=105.40 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=64.3
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEE-EeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKIT-TFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~-~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
..+|||++++. +|++|+++|++||+|.+|+ ++.....+.|||+|.+.++|.+|++.|||..| .|++|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~ 85 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL---------ENFTLK 85 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---------SSCBCE
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEE
Confidence 46789988884 4899999999999999994 66543334599999999999999999999984 699999
Q ss_pred EeeccCCc
Q 019494 84 ITYSAHTD 91 (340)
Q Consensus 84 v~~s~~~~ 91 (340)
|++++.++
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998663
No 261
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=105.04 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=63.2
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |.||+..+|+++|+++|+.|+. |+++..+ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 84 (102)
T 2fc8_A 14 PSKTLF--VKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF-GFVDFNSEEDAKAAKEAMEDGEIDGN---KV 84 (102)
T ss_dssp CCSSEE--EECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 466677 8999999999999999998854 4443321 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|.|++++.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999998755
No 262
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=103.55 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=57.3
Q ss_pred ccCCCCCCC--HHH----HHHhhccc-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 10 KYLQWQLSA--SGE----RAHVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 10 ~~l~~~~~~--ee~----L~~lF~~f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+||.|++-+ +++ |+++|++| |+|.+|. ++||||+|.+.|+|++|++.|||..+ .||+|
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l---------~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDV---------FGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCS---------SSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCcc---------CCceE
Confidence 788888854 565 66899999 5999992 36899999999999999999999996 49999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|+|++.+
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 99999865
No 263
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.44 E-value=1.5e-13 Score=111.29 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=65.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+...|||.+++. +|++|+++|+.||+|.+|.++. +..+++|||+|.+.++|++|++.|||..| .|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 91 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MG 91 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence 456799999985 4899999999999999998875 23466899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|+|++.+
T Consensus 92 ~~l~v~~a~~~ 102 (126)
T 3ex7_B 92 QPISVDWCFVR 102 (126)
T ss_dssp SBCEEEESEES
T ss_pred eEEEEEEecCC
Confidence 99999999754
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=1.2e-13 Score=109.22 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=62.9
Q ss_pred cccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 7 LSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 7 ~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
..+|||++++ ++|+||+++|++||+|.+|.+ .++||||+|.+.++|++|++.|||..| .|++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~ 93 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVL---------AGQTLD 93 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEE---------TTEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence 3688999887 458999999999999999988 346899999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|++++..
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998754
No 265
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=109.74 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=65.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCcee--------EEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCcc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVH--------KITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRY 71 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~--------~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~ 71 (340)
+..+|||.+++. +|++|+++|++||.|. +|.++. +..++||||+|.+.++|++|++.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--- 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF--- 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE---
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc---
Confidence 457899999984 4899999999999998 587765 23467899999999999999999999985
Q ss_pred CCCCCCCCceEEEeeccCC
Q 019494 72 LLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 72 ~~~~~~~~~~l~v~~s~~~ 90 (340)
.|++|+|++++.+
T Consensus 91 ------~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 ------QGSKLKVSLARKK 103 (113)
T ss_dssp ------TTEECEEECSSCC
T ss_pred ------CCCEEEEEECCCC
Confidence 6999999998865
No 266
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=5.7e-14 Score=104.94 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred ccccCCCCCCC--------HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 8 SRKYLQWQLSA--------SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 8 ~~~~l~~~~~~--------ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
++|||++++.+ |++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--------- 72 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--------- 72 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---------
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---------
Confidence 56888888743 489999999999999998875 24567899999999999999999999985
Q ss_pred CCc-eEEEe
Q 019494 78 GPC-TLRIT 85 (340)
Q Consensus 78 ~~~-~l~v~ 85 (340)
.|+ +|+|+
T Consensus 73 ~g~~~l~V~ 81 (81)
T 2krb_A 73 DKQHTFRVN 81 (81)
T ss_dssp SSSSCCCCC
T ss_pred CCceeEEeC
Confidence 577 77663
No 267
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=105.93 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=63.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
..+|+ |.||++++|+++|+++|+.||. ++|+|..++ +|+ |||+|++.++|.+|++ +|+..|.++ .|+|
T Consensus 15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~i~V 86 (102)
T 1wez_A 15 GHCVH--MRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVEL 86 (102)
T ss_dssp SCEEE--EESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEEE
Confidence 55666 8999999999999999999994 588887543 355 9999999999999995 799999999 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
..+....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 8876543
No 268
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=111.51 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=67.5
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEc--CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~--~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
++++|+ |+||+..+|+++|+++|+.||.|.. |++.. +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 44 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIY--VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEE--EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 466766 8999999999999999999999876 33332 34565 99999999999999999999999998
Q ss_pred CccEEEEEeecCCCC
Q 019494 204 GFCKLHISYSRHTDL 218 (340)
Q Consensus 204 ~~~~l~v~~ak~~~~ 218 (340)
.|+|.|++....
T Consensus 121 ---~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 ---PMVVQFARSARP 132 (143)
T ss_dssp ---ECEEEECCCSCC
T ss_pred ---EEEEEECCCCCC
Confidence 999999987643
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.5e-14 Score=106.68 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=62.8
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCc-eeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcC-CCCCccCCCCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDG-RSIPRYLLPENMGPC 80 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~-V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng-~~i~~~~~~~~~~~~ 80 (340)
.+..+|||++++.+ |++|+++|++||+ |..+.+. +++||||+|.+.++|++|++.||| ..| .|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~---------~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVEL---------HGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEE---------TTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeE---------CCE
Confidence 35678999999854 8999999999999 6666553 346899999999999999999999 774 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 74 ~l~v~~a~~~ 83 (93)
T 2cqh_A 74 IMEVDYSVSK 83 (93)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999865
No 270
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=7.9e-14 Score=107.83 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=64.0
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
...+|||.+++.+ |+||+++|++||.|.+++++. +..+++|||+|.+.++|++|++.|||..| .|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g 84 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GS 84 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---------CC
Confidence 4567999998844 899999999999998765554 23467899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++..
T Consensus 85 ~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 RKVKLVLGSGP 95 (98)
T ss_dssp EECEEEESSCS
T ss_pred eEEEEEEcCCC
Confidence 99999998743
No 271
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=6.8e-14 Score=108.89 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=64.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEE----cCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~----~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+..|+ |+||+.++|+++|+++|+.||.|..+.+. .+++|+ |||+|.+.++|.+|++ |||..|.++ .|+|
T Consensus 17 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~-l~g~~~~g~---~l~V 89 (101)
T 1fj7_A 17 PFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIKL 89 (101)
T ss_dssp SEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGCCBTTB---CCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcE-EEEEECCHHHHHHHHh-cCCcEECCc---EEEE
Confidence 45555 99999999999999999999988772221 234676 9999999999999999 999999998 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
.+++.+.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9987654
No 272
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5e-13 Score=106.26 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=66.5
Q ss_pred CCCcEEEEEeecCCCCCC-----------HHHHHHHHcccCCeeEEEEEcC-CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 133 PESNVLLASIENMQYAVT-----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~vt-----------~~~L~~~F~~fG~v~~v~i~~~-~~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
.++++|+ |.||....+ +++|+++|++||.|++|.|..+ .+|+ |||+|.+.++|.+|++.|||..|
T Consensus 13 ~~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEE-EEEEECCHHHHHHHHHHcCCCEE
Confidence 3578877 789843332 5899999999999999987643 3676 99999999999999999999999
Q ss_pred CCCCccEEEEEeecCCC
Q 019494 201 YDGGFCKLHISYSRHTD 217 (340)
Q Consensus 201 ~~~~~~~l~v~~ak~~~ 217 (340)
.++ .|+|.|+++..
T Consensus 90 ~gr---~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGR---QITAQAWDGTT 103 (112)
T ss_dssp TTE---ECEEEECCSCC
T ss_pred CCc---EEEEEEeCCCC
Confidence 998 99999987754
No 273
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=8.4e-14 Score=102.19 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
|+|+||+.++|+++|+++|++||.|.+|.+..+ ++|+ |||+|.+.++|.+|++. ++..|.|+ .|+|.+|
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCC-EEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCE-EEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence 459999999999999999999999999988643 2565 99999999999999985 89999998 8888764
No 274
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.43 E-value=2.2e-13 Score=114.62 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=67.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+...|||.+++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++||+.|||..| .
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---------D 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---------T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------C
Confidence 4567899999984 48999999999999999988762 2456899999999999999999999885 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
+++|+|++++..
T Consensus 108 g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 108 DRIIRTDWDAGF 119 (156)
T ss_dssp TEECEEEEESCC
T ss_pred CeEEEEEECCCC
Confidence 999999999854
No 275
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-13 Score=107.00 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
....|||++++. +|++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++ ++|.. +.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~---------~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK---------YKET 79 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC---------CTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE---------ECCE
Confidence 346789999884 4899999999999999999886 3456789999999999999998 89987 4699
Q ss_pred eEEEeeccC
Q 019494 81 TLRITYSAH 89 (340)
Q Consensus 81 ~l~v~~s~~ 89 (340)
.|+|.+++.
T Consensus 80 ~l~V~~~~~ 88 (103)
T 1s79_A 80 DLLILFKDD 88 (103)
T ss_dssp TCEEEEHHH
T ss_pred EEEEEEchH
Confidence 999998763
No 276
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=1.8e-13 Score=114.29 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=66.0
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||++++. +|++|+++|++||+|.+|++.+. +++||||+|.+.++|.+|++.|||..| .|++|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTL---------CGCRVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCS---------SSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEE
Confidence 457889998884 37999999999999999998875 466899999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|++++.+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 277
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=105.96 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=60.3
Q ss_pred cccccCCCCC---------CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 7 LSRKYLQWQL---------SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 7 ~~~~~l~~~~---------~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
..|+.|.|.+ ++|++|+++|++||+|.+|.+++ .+++||||+|.+.++|++|++.+++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~~----------- 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVGL----------- 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCBC-----------
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCCC-----------
Confidence 4577777766 35899999999999999999885 45668999999999999999986652
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.+++|+|+|++.+
T Consensus 78 ~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 78 VDNPLKISWLEGQ 90 (100)
T ss_dssp SSSBCEEECSSCC
T ss_pred CCCeEEEEEccCC
Confidence 4899999998754
No 278
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=109.91 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=64.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++.|++ . +.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~---------~~g 85 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I---------IDG 85 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E---------ETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c---------CCC
Confidence 457899999885 48999999999999999998762 3567899999999999999999998 5 469
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++..
T Consensus 86 ~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 RKANVNLAYLG 96 (116)
T ss_dssp EECEEEESTTT
T ss_pred EEEEEEEcccC
Confidence 99999998754
No 279
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=3.7e-13 Score=117.02 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=72.0
Q ss_pred CcEEEEEeecCCC-CCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 135 SNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 135 s~vl~v~v~nl~~-~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
+++|+ |+||+. .+|+++|+++|+.||.|.+|++..+++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|.|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a 76 (198)
T 1qm9_A 3 NSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS 76 (198)
T ss_dssp CCEEE--EECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSC-CEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEEC
T ss_pred CcEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCE-EEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEe
Confidence 45666 899999 99999999999999999999998877786 99999999999999999999999998 9999999
Q ss_pred cCCCCc
Q 019494 214 RHTDLS 219 (340)
Q Consensus 214 k~~~~~ 219 (340)
+.....
T Consensus 77 ~~~~~~ 82 (198)
T 1qm9_A 77 KHQNVQ 82 (198)
T ss_dssp CCCSCC
T ss_pred cCCCcC
Confidence 876543
No 280
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.6e-13 Score=107.12 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=66.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||.+++. +|++|+++|+.||+|.+|.+++. ..++||||+|.+.++|++|++.|||..|....+ ....++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~-~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG-VSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT-SCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc-ccCCCC
Confidence 456889999885 48999999999999999988763 345789999999999999999999998631100 001478
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|.|++..
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998743
No 281
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=101.86 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred ccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 8 SRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 8 ~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
++|||++++.+ |++|+++|++||+|.+|.+.+. .++++|||+|.+.++|++|++.++ .. +.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~---------~~g~~ 70 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE---------LDSKT 70 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC---------CSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc---------cCCEE
Confidence 46888888743 7999999999999999988762 346789999999999999999998 66 47999
Q ss_pred EEEeec
Q 019494 82 LRITYS 87 (340)
Q Consensus 82 l~v~~s 87 (340)
|+|+++
T Consensus 71 l~v~~a 76 (77)
T 1uaw_A 71 IDPKVA 76 (77)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999876
No 282
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=107.43 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=62.8
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
.+..+|||++++.+ |++|+++|+.|| |.+|.+++. ..++||||+|.+.++|.+|+ .|||..|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--------- 85 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--------- 85 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---------
Confidence 35678899998843 899999999999 999988753 24678999999999999999 8999984
Q ss_pred CCceEEEeeccCC
Q 019494 78 GPCTLRITYSAHT 90 (340)
Q Consensus 78 ~~~~l~v~~s~~~ 90 (340)
.|+.|+|++++.+
T Consensus 86 ~g~~l~V~~a~~~ 98 (100)
T 2j76_E 86 GNRRIRVDVADQA 98 (100)
T ss_dssp TTBCCCCEECCCS
T ss_pred CCeEEEEEeccCC
Confidence 6999999998754
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=104.85 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=64.3
Q ss_pred cccccccCCCCCC--CHHHHHHhhccc--CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAF--GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~f--G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
.+..+|||++++. +|++|+++|++| |+|.+|.+. ++||||+|.+.++|++|++.|||..| .|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVL---------DGS 79 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEE---------TTE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEe---------CCc
Confidence 4567899999984 489999999999 999999765 35899999999999999999999985 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
+|+|++++.+
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpd_A 80 PIEVTLAKPV 89 (99)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999999865
No 284
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=107.67 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=64.1
Q ss_pred cccccCCCCCCC--------HHHHHHhhcccCceeEEEEee--ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 7 LSRKYLQWQLSA--------SGERAHVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 7 ~~~~~l~~~~~~--------ee~L~~lF~~fG~V~~v~~~~--~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
.++|||++++.+ |++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-------- 86 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-------- 86 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--------
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--------
Confidence 467899888843 488999999999999998875 24567899999999999999999999885
Q ss_pred CCCc-eEEEeeccCC
Q 019494 77 MGPC-TLRITYSAHT 90 (340)
Q Consensus 77 ~~~~-~l~v~~s~~~ 90 (340)
.|+ +|+|+++...
T Consensus 87 -~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 -DKQHTFRVNLFTDF 100 (105)
T ss_dssp -STTCEEEEECSCCC
T ss_pred -CCCceEEEEEcchH
Confidence 688 9999998743
No 285
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=2.7e-13 Score=111.76 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=67.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
..+|+ |+||++++|+++|+++|+.||. |++|+|..++ +|+ |||+|++.++|.+|++ |||..|.++ .
T Consensus 44 ~~~lf--VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~-aFV~F~~~e~a~~Al~-~~g~~l~gr---~ 116 (136)
T 2hgl_A 44 GFVVK--LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGE-AFVELGSEDDVKMALK-KDRESMGHR---Y 116 (136)
T ss_dssp TCEEE--EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEE-EEEECSSHHHHHHHHT-TTEEESSSS---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCEECCE---E
Confidence 55666 8999999999999999999999 8889887543 455 9999999999999999 999999999 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.+++..+.
T Consensus 117 i~V~~a~~~e~ 127 (136)
T 2hgl_A 117 IEVFKSHRTEM 127 (136)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEECChHHH
Confidence 99999876543
No 286
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.41 E-value=4.5e-13 Score=105.51 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=62.0
Q ss_pred ccccCCCCCC-------CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCC
Q 019494 8 SRKYLQWQLS-------ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 75 (340)
Q Consensus 8 ~~~~l~~~~~-------~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~ 75 (340)
.-|+|.|..+ .|+||+++|++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||+.+
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~------- 81 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF------- 81 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-------
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-------
Confidence 3445655542 38999999999999999988762 3477899999999999999999999985
Q ss_pred CCCCceEEEeeccCC
Q 019494 76 NMGPCTLRITYSAHT 90 (340)
Q Consensus 76 ~~~~~~l~v~~s~~~ 90 (340)
.|++|+|+|+...
T Consensus 82 --~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 82 --GGRVVKACFYNLD 94 (105)
T ss_dssp --TTEECEEEECCHH
T ss_pred --CCcEEEEEEcCHH
Confidence 6999999998754
No 287
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=115.09 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=65.7
Q ss_pred ccccCCCCCC--CHHHHHHhhcccC--ceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 8 SRKYLQWQLS--ASGERAHVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 8 ~~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+|||++++. +|++|+++|+.|| +|.+|.++. +.+++||||+|.+.++|++||+.|||..| .|
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---------~G 126 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---------NG 126 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---------TT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 5789999984 4899999999999 999998875 23567899999999999999999999985 69
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
+.|+|++++.+.
T Consensus 127 r~l~V~~a~~~~ 138 (156)
T 3n9u_C 127 EKVDVRPATRQN 138 (156)
T ss_dssp EECEEEECCHHH
T ss_pred eEeEEEEcCCCc
Confidence 999999997553
No 288
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=107.30 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=64.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. +|++|+++|++||+|.+|.+++. ..++||||+|.+.++|++|++. |+..| .|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---------~g 84 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---------DG 84 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---------CC
Confidence 456899999884 48999999999999999988763 3456899999999999999998 98874 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 85 ~~l~V~~a~~~ 95 (105)
T 2dh8_A 85 RNIDPKPCTPR 95 (105)
T ss_dssp EEEBCCCSCCS
T ss_pred EEEEEEEccCC
Confidence 99999998865
No 289
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=3e-13 Score=102.72 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=65.0
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+...+|||++++. +|+||+++|++| +|.+|.+. .++++|||+|.+.++|++|++.|||..+ .|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l 70 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSF---------RGKDL 70 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEE---------TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeE---------CCcEE
Confidence 3456889999884 489999999999 99999885 3566899999999999999999999984 69999
Q ss_pred EEeeccCCc
Q 019494 83 RITYSAHTD 91 (340)
Q Consensus 83 ~v~~s~~~~ 91 (340)
+|+++..+.
T Consensus 71 ~V~~a~~~~ 79 (88)
T 1wg1_A 71 IVQLQPTDA 79 (88)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999998654
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2e-13 Score=108.67 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++. +|++|+++|+.||+|.+|.++. +..++||||+|.+.++|++|+ .|||..| .|+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~ 94 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---------LGV 94 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---------TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---------CCe
Confidence 35789999885 4899999999999999999875 235678999999999999999 9999884 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|++++.+
T Consensus 95 ~l~V~~a~~~ 104 (114)
T 2cq4_A 95 PIIVQASQAE 104 (114)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEecCCC
Confidence 9999998754
No 291
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.8e-13 Score=120.95 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCCcEEEEEeecCCCCC---------CHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCee---
Q 019494 133 PESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--- 200 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~v---------t~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i--- 200 (340)
..+++|+ |+||+..+ ++++|+++|++||+|++|+|+..+ |+ |||+|.++++|..|+++|||..|
T Consensus 132 ~~~rtLf--VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~-AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLY--VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NC-GFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEE--EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceee--cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CE-EEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 3467777 89999988 799999999999999999998754 65 99999999999999999999999
Q ss_pred ---------CCCCccEEEEEeecCCC
Q 019494 201 ---------YDGGFCKLHISYSRHTD 217 (340)
Q Consensus 201 ---------~~~~~~~l~v~~ak~~~ 217 (340)
.|+ .|+|.||+...
T Consensus 208 ~~~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSC---CCEEEECC---
T ss_pred ccccccccCCCC---EEEEEEccCCC
Confidence 677 99999998653
No 292
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-13 Score=112.16 Aligned_cols=76 Identities=5% Similarity=0.060 Sum_probs=65.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEE-EEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
..+|+ |+||++++|+++|+++|+.||.|..++ +..+ .+|+ |||+|.+.++|.+|++ |||..|.++ .|+
T Consensus 25 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~i~ 97 (124)
T 1wel_A 25 GFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FIQ 97 (124)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CBE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 45666 899999999999999999999998743 4322 2465 9999999999999999 999999999 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.+++.+.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997765
No 293
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.41 E-value=1.6e-13 Score=112.92 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=66.7
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |++|+++|++||+|.+|.+++ +..++||||+|.+.++|++|++.|||..| .|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---------~g 116 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DG 116 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CC
Confidence 4567999999854 899999999999999998875 23567899999999999999999999985 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 117 ~~l~V~~a~~~ 127 (135)
T 2lea_A 117 RELRVQMARYG 127 (135)
T ss_dssp SCCEEEECCCC
T ss_pred EEEEEEECCCC
Confidence 99999999865
No 294
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=3.1e-13 Score=105.57 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=63.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.|| |.+|.+++. ..++||||+|.+.++|++|+ .|||..| .|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g 82 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---------GD 82 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---------TT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---------CC
Confidence 456889999884 4899999999997 999988762 24668999999999999999 8999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 83 ~~l~V~~a~~~ 93 (103)
T 2dng_A 83 RSLRVDIAEGR 93 (103)
T ss_dssp EECEEEECCCC
T ss_pred eEEEEEEecCC
Confidence 99999998865
No 295
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3e-13 Score=105.88 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=64.0
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee-----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~-----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
+..+|||.+++. +|++|+++|+.|| |.+|.+++. ..++||||+|.+.++|++|+ .|||..| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~ 82 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------G 82 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---------T
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---------C
Confidence 456889999884 4899999999999 999988752 23668999999999999999 9999884 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|+.|+|++++.+
T Consensus 83 g~~l~V~~a~~~ 94 (104)
T 1wi8_A 83 NKRIRVDVADQA 94 (104)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999999865
No 296
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=6.1e-13 Score=112.03 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=68.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+|||.++|+++|+++|+.||.|.+|++...+ +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 76 (168)
T 1b7f_A 3 NTNLI--VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNK---RLK 76 (168)
T ss_dssp CSEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceE-EEEEECCHHHHHHHHHhcCCCEeCCc---EEE
Confidence 56666 89999999999999999999999999986542 365 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.|+++..
T Consensus 77 v~~~~~~~ 84 (168)
T 1b7f_A 77 VSYARPGG 84 (168)
T ss_dssp EEECCCCS
T ss_pred EEecCCCc
Confidence 99998654
No 297
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=8.9e-13 Score=110.66 Aligned_cols=77 Identities=18% Similarity=0.378 Sum_probs=68.7
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 2 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 75 (167)
T 1fxl_A 2 KTNLI--VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTK---TIK 75 (167)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred cceEE--EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeE-EEEEECCHHHHHHHHHHcCCCccCCc---eEE
Confidence 45666 89999999999999999999999999987654 254 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.++++..
T Consensus 76 v~~~~~~~ 83 (167)
T 1fxl_A 76 VSYARPSS 83 (167)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99998654
No 298
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-14 Score=114.75 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=68.1
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeE--------EEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~--------v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
++++|+ |+||+..+|+++|+++|++||.|.. |+|... .+|+ |||+|.+.++|.+|++.|||..|
T Consensus 6 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 355666 8999999999999999999999998 777643 2465 99999999999999999999999
Q ss_pred CCCCccEEEEEeecCCC
Q 019494 201 YDGGFCKLHISYSRHTD 217 (340)
Q Consensus 201 ~~~~~~~l~v~~ak~~~ 217 (340)
.++ .|+|+|++.+.
T Consensus 83 ~g~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGN---PIKVSFATRRA 96 (116)
Confidence 998 99999987654
No 299
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.5e-13 Score=107.03 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=64.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCc-eeEEEEee-----ecCCceEEEEeCCHHHHHHHHHHhc--CCCCCccCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPE 75 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~-V~~v~~~~-----~~~~~~AFVeF~~~e~A~~Ai~~ln--g~~i~~~~~~~ 75 (340)
+..+|||++++. +|++|+++|+.||+ |.+|.+++ +.+++||||+|.+.++|.+|++.|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~-------- 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------- 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC--------
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce--------
Confidence 456899999984 48999999999999 99998872 2456789999999999999999996 465
Q ss_pred CCCCceEEEeeccCC
Q 019494 76 NMGPCTLRITYSAHT 90 (340)
Q Consensus 76 ~~~~~~l~v~~s~~~ 90 (340)
+.|++|+|+|++.+
T Consensus 79 -~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 -LWGHQIAVDWAEPE 92 (109)
T ss_dssp -BTTBCCEEEESCSS
T ss_pred -ecCCeEEEEEcCCC
Confidence 46999999999865
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=104.27 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=61.8
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
...+|||++++. +|++|+++|++||+|.+|.+.+...+ ||||+|.+.++|++|++ |||..| .|+.|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~---------~g~~l~ 75 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSL---------GGHRLR 75 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEE---------TTEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEE---------CCEEEE
Confidence 456899999884 48999999999999999843333333 89999999999999999 999885 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|+++..+
T Consensus 76 V~~a~~~ 82 (94)
T 2e5g_A 76 VRPREQK 82 (94)
T ss_dssp CBCSCCS
T ss_pred EEECCcC
Confidence 9987654
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=111.69 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|++||+|.+|.+.+ +..++||||+|.+.++|++|++.|||..| .|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 132 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FG 132 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---------TT
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 456889999984 4899999999999999998875 23567899999999999999999999884 69
Q ss_pred ceEEEeec
Q 019494 80 CTLRITYS 87 (340)
Q Consensus 80 ~~l~v~~s 87 (340)
++|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999985
No 302
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5.2e-13 Score=100.72 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=62.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
+++|+ |+||+.++|+++|+++|++| | .|.++.+...+ |+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus 6 ~~~l~--V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~-afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 6 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cE-EEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 56666 89999999999999999999 8 99999988664 65 999999999999999 9999999998
Q ss_pred CccEEEEE
Q 019494 204 GFCKLHIS 211 (340)
Q Consensus 204 ~~~~l~v~ 211 (340)
.|+|+
T Consensus 81 ---~l~V~ 85 (87)
T 2hzc_A 81 ---SLKIR 85 (87)
T ss_dssp ---ECEEE
T ss_pred ---EEEEe
Confidence 88886
No 303
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.40 E-value=4.1e-13 Score=101.42 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=60.9
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |++|+++|++||+|.+|.++.. .++++|||+|.+.++|++|++ +++.. +.|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~---------~~g 79 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHR---------LDG 79 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEE---------ETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCE---------ECC
Confidence 5678999999854 8999999999999999988762 346789999999999999995 57766 469
Q ss_pred ceEEEeec
Q 019494 80 CTLRITYS 87 (340)
Q Consensus 80 ~~l~v~~s 87 (340)
+.|+|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 304
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=106.22 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=62.1
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||.+++. +|+||+++|++||.|.-+....+..++||||+|.+.++|++|++.|||..| .++.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~ 84 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---------EGRAIR 84 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---------TTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---------CCeEEE
Confidence 457889999885 489999999999998322111134567899999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|++++.+
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999865
No 305
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9e-13 Score=104.51 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=65.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
..+|+ |+||++++|+++|+++|+.| .|++|+|..+ .+|+ |||+|.+.++|.+|+ .||+..|.++ .|+|
T Consensus 16 ~~~v~--V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V 87 (109)
T 2dnn_A 16 DLYVS--VHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGN-GLVKFLSPQDTFEAL-KRNRMLMIQR---YVEV 87 (109)
T ss_dssp HHEEE--EECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSE-EEEECSSHHHHHHHH-HTTTEEETTE---EEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeE-EEEEECCHHHHHHHH-hcCCCeECCe---EEEE
Confidence 34555 99999999999999999999 8999998743 3576 999999999999999 6999999998 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
..+....
T Consensus 88 ~~a~~~~ 94 (109)
T 2dnn_A 88 SPATERQ 94 (109)
T ss_dssp EECCHHH
T ss_pred EECCccc
Confidence 8876543
No 306
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.39 E-value=8.4e-13 Score=116.64 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
++++|+ |+||+.++|+++|+++|++||+|++|+|..++ +|+ |||+|.+.++|.+|++.||+..+.++ .|
T Consensus 14 p~~tlf--VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~~~~~~~~g~---~i 87 (213)
T 4f02_A 14 PMASLY--VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGY-AYVNFQQPADAERALDTMNFDVIKGK---PV 87 (213)
T ss_dssp -CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcccc-ccceeCCHHHHHHHHHHhhhhhcCCc---cc
Confidence 466777 89999999999999999999999999987532 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
++.++....
T Consensus 88 ~~~~~~~~~ 96 (213)
T 4f02_A 88 RIMWSQRDP 96 (213)
T ss_dssp EEEECCCCT
T ss_pred ccccccccc
Confidence 999986553
No 307
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.39 E-value=3.1e-13 Score=109.09 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=64.1
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||++++. +|+||+++|++||+|.+|.+++. .+++||||+|.+.++|++|+ .|||..| .|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~ 105 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---------RGR 105 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---------TTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---------CCe
Confidence 45789988874 48999999999999999988762 35678999999999999999 8999884 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|++++..
T Consensus 106 ~l~V~~a~~~ 115 (124)
T 2jwn_A 106 TIKVLPKRTN 115 (124)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9999998854
No 308
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.39 E-value=3.7e-13 Score=113.22 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=66.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++. +|++|+++|+.||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g 139 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DG 139 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---------SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 356889999985 4899999999999999998876 23667899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|++++.+
T Consensus 140 ~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 RELRVQMARYG 150 (158)
T ss_dssp SEEEEEEECCS
T ss_pred eEEEEEECCCC
Confidence 99999999865
No 309
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-13 Score=105.06 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=64.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
.+..+|||++++. +|++|+++|+.||+|..+ ...+.++++|||+|.+.++|.+|++.|||..| .|++|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSV 83 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---------TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEE
Confidence 3567899999884 489999999999999887 22234567899999999999999999999884 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998754
No 310
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=106.58 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=67.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCC---eeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~---v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
..+|+ |+||++++|+++|+++|+.||. |..|+|..+ .+|+ |||+|.+.++|.+|++ ||+..|.++ .
T Consensus 11 ~~~l~--V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~ 83 (107)
T 2lmi_A 11 VFLIR--AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGD-ALIEMESEQDVQKALE-KHRMYMGQR---Y 83 (107)
T ss_dssp CCEEE--EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSE-EEEEBSSHHHHHHHHT-TTTCCSSSS---C
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCcceeCCe---E
Confidence 45555 8999999999999999999998 899988643 3566 9999999999999999 999999998 9
Q ss_pred EEEEeecCCCC
Q 019494 208 LHISYSRHTDL 218 (340)
Q Consensus 208 l~v~~ak~~~~ 218 (340)
|+|.+++..+.
T Consensus 84 i~V~~a~~~~~ 94 (107)
T 2lmi_A 84 VEVYEINNEDV 94 (107)
T ss_dssp CCCEECCHHHH
T ss_pred EEEEECCHHHH
Confidence 99999876553
No 311
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.39 E-value=5e-13 Score=105.77 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=62.6
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||++++.+ |++|+++|+.||+|.+|.+++ +.+++||||+|.+.++|.+|++.+ |.. +.|
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~---------l~g 93 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE---------LDS 93 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE---------ETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc---------CCC
Confidence 4567899998844 899999999999999999876 235678999999999999999876 455 579
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|+|.++..+
T Consensus 94 ~~l~V~~a~~~ 104 (109)
T 2rs2_A 94 KTIDPKVAFPR 104 (109)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEccCC
Confidence 99999998855
No 312
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=7.1e-13 Score=104.37 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCcEEEEEeecCC--CCCC--------HHHHHHHHcccCCeeEEEEEcC-------CCCeEEEEEcCChHHHHHHHHHhc
Q 019494 134 ESNVLLASIENMQ--YAVT--------LDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALE 196 (340)
Q Consensus 134 ~s~vl~v~v~nl~--~~vt--------~~~L~~~F~~fG~v~~v~i~~~-------~~g~~afV~F~~~~~A~~A~~~ln 196 (340)
++++|. +.|+- ..+. +++|+++|++||+|++|+|.+. .+|+ |||+|++.++|.+|++.||
T Consensus 4 ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE-EEEEESSHHHHHHHHHHHT
T ss_pred CCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE-EEEEECCHHHHHHHHHHhC
Confidence 588888 77873 2333 3689999999999999998753 3576 9999999999999999999
Q ss_pred CCeeCCCCccEEEEEeecCCC
Q 019494 197 GHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 197 g~~i~~~~~~~l~v~~ak~~~ 217 (340)
|..+.|+ .|+|+|+....
T Consensus 81 G~~f~GR---~i~v~~~~~~~ 98 (105)
T 3v4m_A 81 GRKFANR---VVVTKYCDPDS 98 (105)
T ss_dssp TCEETTE---ECEEEEECHHH
T ss_pred CCEeCCC---EEEEEEeCHHH
Confidence 9999999 99999987654
No 313
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=112.35 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=64.0
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeE--EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCC----CCCccCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHK--ITTFE----KTAGFQALVQFSDTETASSAKNALDGR----SIPRYLL 73 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~--v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~----~i~~~~~ 73 (340)
+..+|||++++. +|++|+++|++||+|.+ |++++ +.+++||||+|.+. +|.+|++.|||. .
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~------ 94 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT------ 94 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc------
Confidence 456799999884 38999999999999966 87775 23567899999999 999999999998 6
Q ss_pred CCCCCCceEEEeeccCC
Q 019494 74 PENMGPCTLRITYSAHT 90 (340)
Q Consensus 74 ~~~~~~~~l~v~~s~~~ 90 (340)
+.|++|+|++++.+
T Consensus 95 ---~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 ---IDGKTINVEFAKGS 108 (131)
T ss_dssp ---GGGCCCCCEECCCS
T ss_pred ---CCCEEEEEEECCCC
Confidence 46999999999865
No 314
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.5e-13 Score=105.60 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=56.3
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
|++|+++|++||+|.+|.+..+..+++|||+|.+.++|.+|++.|||..| .|++|+|+|+..+
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---------~gr~l~v~~a~~~ 102 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF---------GGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE---------TTEECEEEECCSC
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEEeCCC
Confidence 47999999999999999776555678999999999999999999999985 6999999998754
No 315
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.5e-13 Score=106.91 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=63.9
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
..+|||.+++. +|++|+++|+.||+|.+|.+++. ..++||||+|.+.++|.+|++. ++.. +.|+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~---------~~g~ 96 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS---------IDGR 96 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE---------ETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE---------ECCE
Confidence 46789998884 48999999999999999988762 3467899999999999999987 8877 4699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|.+++.+
T Consensus 97 ~l~V~~a~~~ 106 (116)
T 1x4b_A 97 VVEPKRAVAR 106 (116)
T ss_dssp EEEEECCSSC
T ss_pred EEEEEECCCC
Confidence 9999998865
No 316
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.5e-13 Score=103.45 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=63.6
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeE-EEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~-v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
...+|||++++.+ |+||+++|+.||.|.+ |.+.. +..++||||+|.+.++|++|++. |+.. +.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~---------~~g 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER---------IGH 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC---------SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch---------hCC
Confidence 3567899888844 8999999999999987 76654 34567899999999999999987 8877 479
Q ss_pred ceEEEeeccCCcc
Q 019494 80 CTLRITYSAHTDL 92 (340)
Q Consensus 80 ~~l~v~~s~~~~l 92 (340)
+.|+|.+++.+++
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999999876543
No 317
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=7e-13 Score=105.97 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce--
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT-- 81 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~-- 81 (340)
...+|||.+++. +|+||+++|++||+|.+|.+++. +||||+|.+.++|++||+.|||..| .|++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBC---------CCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEee
Confidence 456789988874 38999999999999999998753 6899999999999999999999985 5777
Q ss_pred ---EEEeecc
Q 019494 82 ---LRITYSA 88 (340)
Q Consensus 82 ---l~v~~s~ 88 (340)
|+|..+.
T Consensus 83 ~~~i~v~~~~ 92 (115)
T 3beg_B 83 TAYIRVKVDG 92 (115)
T ss_dssp CCBCEEEECC
T ss_pred eEEEEeccCC
Confidence 5555544
No 318
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-13 Score=106.55 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=62.5
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||++++.+ |++|+++|+.||.|.++++.. +.+++||||+|.+.++|++|++ |||..| .|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---------~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---------FGN 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---------TTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---------CCc
Confidence 4568899998854 899999999999988732222 3467789999999999999998 999985 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|++++.+
T Consensus 86 ~l~V~~a~~~ 95 (101)
T 1fj7_A 86 EIKLEKPKGR 95 (101)
T ss_dssp CCEEECCSCC
T ss_pred EEEEEEcCCC
Confidence 9999998865
No 319
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=99.51 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 147 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 147 ~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
..+|+++|+++|++||+|++|.|..+.+|+ |||+|++.++|.+|++.+++ +.++ .|+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGf-aFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGT-AVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSE-EEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCE-EEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence 468999999999999999999998777886 99999999999999998655 5677 99999987654
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.36 E-value=5.7e-13 Score=103.78 Aligned_cols=75 Identities=11% Similarity=0.243 Sum_probs=65.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+++|+ |+||+.++|+++|+++|+.||.|.+|+|..++ +|+ |||+|.+.++|.+|++ ++..+.|+ .|+|
T Consensus 9 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v 80 (102)
T 2xs2_A 9 PNTVF--VGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGY-GFVSFYNDVDVQKIVE--SQINFHGK---KLKL 80 (102)
T ss_dssp EEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence 45555 89999999999999999999999999987643 355 9999999999999999 99999998 9999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
.++....
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9987544
No 321
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.36 E-value=8.8e-13 Score=112.06 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=65.4
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+..+|||.+++. ++++|+++|++||+|.+|.++.. ..++||||+|.+.++|.+||+.|||..| .|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g 141 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MG 141 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---------CC
Confidence 445799999884 48999999999999999988762 2467899999999999999999999884 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|.|++.+
T Consensus 142 ~~l~V~~a~~~ 152 (165)
T 1rk8_A 142 QTIQVDWCFVK 152 (165)
T ss_dssp EECEEEESEEC
T ss_pred EEEEEEEecCC
Confidence 99999998754
No 322
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=102.14 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=63.0
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
.+..+|||.+++. +|++|+++|++||+|.+|.+++. .+++||||+|.+.++|++|++ ++.. +.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~---------~~ 81 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHM---------ID 81 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEE---------ET
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCe---------eC
Confidence 3567899999884 48999999999999999988762 346789999999999999998 4544 47
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|+.|+|.+++.+
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 GRWCDCKLPNSK 93 (103)
T ss_dssp TEEEEEECCCTT
T ss_pred CeEEEEEecCCC
Confidence 999999998865
No 323
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.5e-12 Score=109.17 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=66.5
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecC
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 215 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~ 215 (340)
|+|+|||.++|+++|+++|+.||.|.+|++...+ +|+ |||+|.+.++|.+|++.|||..+.++ .|+|.+++.
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~~~~ 78 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNY-AFVEYHQSHDANIALQTLNGKQIENN---IVKINWAFQ 78 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCE-EEEEeCCHHHHHHHHHHcCCCccCCC---eeEEEEcCC
Confidence 4499999999999999999999999999987543 354 99999999999999999999999998 999999876
Q ss_pred CC
Q 019494 216 TD 217 (340)
Q Consensus 216 ~~ 217 (340)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 324
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.1e-13 Score=100.45 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=63.4
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...+|||++++.+ |+||+++|+.| .|.+|.+++. ..+++|||+|.+.++|++|++ |||..| .|+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---------~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---------GGR 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---------TTE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---------CCc
Confidence 3467899888843 89999999999 9999988763 346689999999999999999 999884 699
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|+|.+++.+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 9999998765
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=6.2e-13 Score=110.16 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=65.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeE--------EEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHK--------ITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 73 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~--------v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~ 73 (340)
.+..+|||+|++. +|++|+++|+.||.|.+ |++.+ +.+++||||+|.+.++|.+|++.|||..|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~----- 117 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL----- 117 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-----
Confidence 4667899999884 48999999999999876 44433 45677999999999999999999999985
Q ss_pred CCCCCCceEEEeeccCC
Q 019494 74 PENMGPCTLRITYSAHT 90 (340)
Q Consensus 74 ~~~~~~~~l~v~~s~~~ 90 (340)
.|++|+|+|++..
T Consensus 118 ----~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 ----FGKPMVVQFARSA 130 (143)
T ss_dssp ----TTEECEEEECCCS
T ss_pred ----CCcEEEEEECCCC
Confidence 6999999999754
No 326
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1e-12 Score=102.28 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+..+|||.+++. +|+||+++|+.|+.|.-+.... +..++||||+|.+.++|++|++.|||..| .|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l 84 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---------DGNKV 84 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---------CCeEE
Confidence 567889999884 4899999999886443322111 23457899999999999999999999985 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|++++.+
T Consensus 85 ~V~~a~~~ 92 (102)
T 2fc8_A 85 TLDWAKPK 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999865
No 327
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.34 E-value=4.3e-13 Score=110.97 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=64.5
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
..+|+ |.||++++|+++|+++|+.|| |++|+|..+ ++|+ |||+|++.++|.+|+ .+|+..|.++ .|+|
T Consensus 46 ~~~lf--V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGf-aFV~F~~~e~A~~Al-~~~g~~l~gR---~i~V 117 (139)
T 2hgn_A 46 GHCVH--MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGE-ADVEFATHEEAVAAM-SKDRANMQHR---YIEL 117 (139)
T ss_dssp CCCEE--CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCC-CEEECSHHHHHHHHT-TCCSCSSSSC---CCCC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceE-EEEEeCCHHHHHHHH-hhCCCEECCE---EEEE
Confidence 44555 999999999999999999999 779988643 3566 999999999999999 7899999999 8999
Q ss_pred EeecCCC
Q 019494 211 SYSRHTD 217 (340)
Q Consensus 211 ~~ak~~~ 217 (340)
..+....
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876544
No 328
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.34 E-value=7.1e-13 Score=118.83 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=65.1
Q ss_pred cccccCCCCCC--CHHHHHHhhcccC--ceeEEEEeee----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFG--FVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG--~V~~v~~~~~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
..+|||++++. +|++|+++|++|| +|.+|+|++. .+++||||+|.+.++|++||+.|||..| .
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---------~ 138 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------H 138 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---------T
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---------C
Confidence 45699999884 4899999999999 9999988762 3567899999999999999999999985 6
Q ss_pred CceEEEeeccCC
Q 019494 79 PCTLRITYSAHT 90 (340)
Q Consensus 79 ~~~l~v~~s~~~ 90 (340)
|++|+|.+++..
T Consensus 139 Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 139 GQNPVVTPVNKQ 150 (229)
T ss_dssp TBCCEEEECCHH
T ss_pred CEEeEEEECCCC
Confidence 999999998754
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.34 E-value=1.3e-12 Score=99.61 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=58.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+...|||++++. +|++|+++|++||+|.+|.++++ +++||||+|.+.++|++ |+|..+. +.+++|+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~-------~~g~~v~ 77 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI-------IKGISVH 77 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE-------ETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc-------cCCEEEE
Confidence 346789988884 48999999999999999998865 56789999999999983 5776653 5799999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|.+++.+
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9998754
No 330
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=3.9e-13 Score=98.54 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=57.9
Q ss_pred cccCCCCCCC--HHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 9 RKYLQWQLSA--SGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 9 ~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
+|||++++.+ |++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|++|++. ++.. +.|+.|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~---------~~g~~l 70 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN---------VGLSKC 70 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC---------BTTBCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe---------ECCEEE
Confidence 4788888743 899999999999999998865 23567899999999999999984 7776 469999
Q ss_pred EEeec
Q 019494 83 RITYS 87 (340)
Q Consensus 83 ~v~~s 87 (340)
+|+++
T Consensus 71 ~v~~a 75 (75)
T 1iqt_A 71 EIKVA 75 (75)
T ss_dssp CEEEC
T ss_pred EEEEC
Confidence 98874
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.4e-12 Score=112.28 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=67.1
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
.+..+|||.+++. +|+||+++|+.||+|.+|.+.. +.++++|||+|.+.++|.+|++.|||..| .|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---------~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---------SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---------CC
Confidence 3457899999984 4899999999999999998876 33567899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
++|+|+++...
T Consensus 157 r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 RPMDIQLVASQ 167 (177)
T ss_dssp SBCEEEEESSG
T ss_pred EEEEEEEecCC
Confidence 99999998865
No 332
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=1e-13 Score=110.77 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=66.0
Q ss_pred cccccccCCCCCCC--HHHHHHhhcccCceeE--------EEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCc
Q 019494 5 WPLSRKYLQWQLSA--SGERAHVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPR 70 (340)
Q Consensus 5 ~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~--------v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~ 70 (340)
.+..+|||++++.+ |++|+++|++||.|.+ |.++. +..++||||+|.+.++|++|++.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 45678999999843 8999999999999998 76654 23567899999999999999999999884
Q ss_pred cCCCCCCCCceEEEeeccCC
Q 019494 71 YLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 71 ~~~~~~~~~~~l~v~~s~~~ 90 (340)
.|++|+|++++.+
T Consensus 83 -------~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 -------SGNPIKVSFATRR 95 (116)
Confidence 6999999998865
No 333
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.33 E-value=2.9e-12 Score=112.46 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=67.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 28 ~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g~---~l~ 101 (216)
T 2qfj_A 28 MSRVY--VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF-AFVEYEVPEAAQLALEQMNSVMLGGR---NIK 101 (216)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSE-EEEEESSHHHHHHHHHHHSSCCCC-C---CCE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCce-EEEEeCCHHHHHHHHHHccCCeeCCe---eEE
Confidence 45666 8999999999999999999999999998653 3565 99999999999999999999999999 999
Q ss_pred EEeecCCC
Q 019494 210 ISYSRHTD 217 (340)
Q Consensus 210 v~~ak~~~ 217 (340)
|.++....
T Consensus 102 v~~~~~~~ 109 (216)
T 2qfj_A 102 VGRPSNIG 109 (216)
T ss_dssp EECCSCCG
T ss_pred EecCCCcc
Confidence 99876543
No 334
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=7e-13 Score=107.41 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=65.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCe----eEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v----~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
..+|+ |.||++++|+++|+++|+.||.| ..|.|..+. +|+ |||+|++.++|.+|++. |+..|.++
T Consensus 23 ~~~v~--V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~-aFV~F~~~~~A~~Al~~-~~~~l~gR--- 95 (123)
T 2dha_A 23 QVIVR--MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGD-AFVLFACEEYAQNALRK-HKDLLGKR--- 95 (123)
T ss_dssp CCEEE--ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEE-EEECCSSHHHHHHHHTT-TTEESSSC---
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHHh-CCCeeCCe---
Confidence 45666 99999999999999999999986 578876532 465 99999999999999996 99999998
Q ss_pred EEEEEeecCCCC
Q 019494 207 KLHISYSRHTDL 218 (340)
Q Consensus 207 ~l~v~~ak~~~~ 218 (340)
.|+|..+..++.
T Consensus 96 ~i~V~~a~~~e~ 107 (123)
T 2dha_A 96 YIELFRSTAAEV 107 (123)
T ss_dssp EECCEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999998876543
No 335
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3e-12 Score=102.95 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCcEEEEEeecCCC--CC---CHHHHHHHHcccCCeeEEEEEcCC---------CCeEEEEEcCChHHHHHHHHHhcCCe
Q 019494 134 ESNVLLASIENMQY--AV---TLDVLHMVFSAFGPVQKIAMFDKN---------GGLQALIQYPDVQTAVVAKEALEGHC 199 (340)
Q Consensus 134 ~s~vl~v~v~nl~~--~v---t~~~L~~~F~~fG~v~~v~i~~~~---------~g~~afV~F~~~~~A~~A~~~lng~~ 199 (340)
+++||+ +.|+-. ++ -+++|++.|++||+|++|+|...+ +|+ +||+|.+.++|.+|++.|||..
T Consensus 19 ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~-~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE-EEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE-EEEEECCHHHHHHHHHHHCCCE
Confidence 588888 778742 22 368899999999999999987542 265 9999999999999999999999
Q ss_pred eCCCCccEEEEEeecCCC
Q 019494 200 IYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 200 i~~~~~~~l~v~~ak~~~ 217 (340)
+.|+ .|+|+|+....
T Consensus 96 f~GR---~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGR---KVVAEVYDQER 110 (118)
T ss_dssp ETTE---ECEEEEECHHH
T ss_pred ECCc---EEEEEEcChHh
Confidence 9999 99999987644
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.4e-12 Score=101.05 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=58.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEc--------CCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~--------~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
++.|+ |+||+.++|+++|+++|++||.|. +++.. +.+|+ |||+|++.++|.+|++.|++ +.|+
T Consensus 8 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~-aFV~f~~~~~a~~Ai~~~~~--~~G~--- 78 (114)
T 2dnl_A 8 SRKVF--VGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGY-AFLLFQEESSVQALIDACLE--EDGK--- 78 (114)
T ss_dssp CCCEE--EECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSE-EEECCSSHHHHHHHHHHSEE--ETTE---
T ss_pred CCEEE--EcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccE-EEEEECCHHHHHHHHHhhhh--cCCc---
Confidence 55666 899999999999999999999999 76643 23576 99999999999999999953 6666
Q ss_pred EEEEEeec
Q 019494 207 KLHISYSR 214 (340)
Q Consensus 207 ~l~v~~ak 214 (340)
.|.+..+.
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 67766554
No 337
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=9e-13 Score=105.86 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=63.5
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
...|||++++. +|+||+++|+.||. |.+|+++. +..+++|||+|.+.++|++|++ ||+..| .
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~ 86 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM---------G 86 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---------T
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---------C
Confidence 45689988884 48999999999999 88998875 2346789999999999999999 999874 7
Q ss_pred CceEEEeeccCCc
Q 019494 79 PCTLRITYSAHTD 91 (340)
Q Consensus 79 ~~~l~v~~s~~~~ 91 (340)
++.|+|.+++.++
T Consensus 87 gr~i~V~~a~~~~ 99 (118)
T 2db1_A 87 HRYIEVFKSHRTE 99 (118)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999987554
No 338
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=1.6e-12 Score=98.01 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=61.3
Q ss_pred cccccccCCCCCC--CHHHHHHhhccc----C-------ceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCcc
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY 71 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~f----G-------~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~ 71 (340)
++..+|||++++. +|++|+++|++| | +|.++.+.+ +++||||+|.+.++|.+|+ .|||..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~--- 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF--- 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEE---
Confidence 4667899999985 489999999999 8 999998875 4678999999999999999 9999984
Q ss_pred CCCCCCCCceEEEee
Q 019494 72 LLPENMGPCTLRITY 86 (340)
Q Consensus 72 ~~~~~~~~~~l~v~~ 86 (340)
.|++|+|+.
T Consensus 78 ------~g~~l~V~r 86 (87)
T 2hzc_A 78 ------QGQSLKIRR 86 (87)
T ss_dssp ------TTEECEEEC
T ss_pred ------CCeEEEEeC
Confidence 699999874
No 339
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=6.1e-12 Score=100.48 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCcEEEEEeecCCCCCC----------HHHHHHHHcccCCeeEEEEEcCC-CCeEEEEEcCChHHHHHHHHHhcCCeeCC
Q 019494 134 ESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYD 202 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt----------~~~L~~~F~~fG~v~~v~i~~~~-~g~~afV~F~~~~~A~~A~~~lng~~i~~ 202 (340)
++++|. +.|+-..-. +++|+++|++||.|++|+|.+.. +|+ |||+|.+.++|.+|++.|||..+.|
T Consensus 6 ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~-~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGN-VYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCC-EEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 477877 677743221 45789999999999999997653 687 9999999999999999999999999
Q ss_pred CCccEEEEEeecCCCCc
Q 019494 203 GGFCKLHISYSRHTDLS 219 (340)
Q Consensus 203 ~~~~~l~v~~ak~~~~~ 219 (340)
+ .|+|+|+......
T Consensus 83 R---~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 K---MITAAYVPLPTYH 96 (114)
T ss_dssp E---ECEEEEECHHHHH
T ss_pred E---EEEEEEEcHHHHH
Confidence 9 9999999766543
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=101.38 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=60.1
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
..+|||.+++.+ |+||+++|+.||.| +|.++.. .++++|||+|.+.++|++|| .+|+.. +.++.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~---------~~gr~ 83 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKAN---------MQHRY 83 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCC---------SSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCe---------ECCcE
Confidence 457888888844 89999999999955 8877652 34668999999999999999 579887 46999
Q ss_pred EEEeeccCC
Q 019494 82 LRITYSAHT 90 (340)
Q Consensus 82 l~v~~s~~~ 90 (340)
|+|..+...
T Consensus 84 i~V~~~~~~ 92 (102)
T 1wez_A 84 VELFLNSTA 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999987754
No 341
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.32 E-value=3.6e-12 Score=107.86 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=66.8
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 207 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~ 207 (340)
+++|+ |+||+.++|+++|+++|++||.|.+|++... ++|+ |||+|.+.++|.+|++.|||..+.++....
T Consensus 3 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 3 AIKMF--VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC-CFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEE-EEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred ceEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 45566 9999999999999999999999999998753 2354 999999999999999999999887433448
Q ss_pred EEEEeecCCC
Q 019494 208 LHISYSRHTD 217 (340)
Q Consensus 208 l~v~~ak~~~ 217 (340)
+++.+++...
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888876544
No 342
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.1e-13 Score=105.03 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=63.9
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCce-eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFV-HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V-~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+...|||++++. +|+||+++|+.||.| .+|.++. +..++||||+|.+.++|++||+. |+.. +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~---------~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK---------LNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE---------ETT
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc---------cCC
Confidence 346789988884 489999999999999 7888765 33567899999999999999986 8877 479
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
+.|+|.+++.+.
T Consensus 84 r~i~v~~a~~~~ 95 (114)
T 2cpy_A 84 REAFVHVVTLED 95 (114)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999998653
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=2.1e-12 Score=116.14 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=65.5
Q ss_pred cccccccCCCCCC-----------CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCC
Q 019494 5 WPLSRKYLQWQLS-----------ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 73 (340)
Q Consensus 5 ~~~~~~~l~~~~~-----------~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~ 73 (340)
.....|||++++. +|++|+++|++||+|.+|++++ ++++|||+|.+.++|+.|++.|+|+.|. +
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~---~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLL---L 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCC---C
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEe---c
Confidence 3456789999874 3899999999999999999886 4578999999999999999999999861 0
Q ss_pred CCC------CCCceEEEeeccCC
Q 019494 74 PEN------MGPCTLRITYSAHT 90 (340)
Q Consensus 74 ~~~------~~~~~l~v~~s~~~ 90 (340)
+.. ..|+.|.|.|++.+
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 000 06899999999854
No 344
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.2e-13 Score=107.58 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=62.0
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCceeEE-EEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v-~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
...|||++++. +|+||+++|+.||.|.++ ++.. +..++||||+|.+.++|++||+ |||..| .|+
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~gr 94 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---------GNR 94 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---------TTS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---------CCc
Confidence 45789988884 489999999999999874 3332 2346789999999999999999 999884 799
Q ss_pred eEEEeeccCCc
Q 019494 81 TLRITYSAHTD 91 (340)
Q Consensus 81 ~l~v~~s~~~~ 91 (340)
.|+|.+++.++
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999988654
No 345
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.30 E-value=1.3e-12 Score=107.70 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=63.4
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCC
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 78 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~ 78 (340)
..+|||++++. +|+||+++|+.||+ |.+|++++ +.+++||||+|.+.++|++|++ |||.. +.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~---------l~ 113 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES---------MG 113 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE---------SS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE---------EC
Confidence 45689988884 48999999999999 88888875 2346789999999999999999 99988 47
Q ss_pred CceEEEeeccCCc
Q 019494 79 PCTLRITYSAHTD 91 (340)
Q Consensus 79 ~~~l~v~~s~~~~ 91 (340)
++.|+|.+++.++
T Consensus 114 gr~i~V~~a~~~e 126 (136)
T 2hgl_A 114 HRYIEVFKSHRTE 126 (136)
T ss_dssp SSEEEEEECCHHH
T ss_pred CEEEEEEECChHH
Confidence 9999999987553
No 346
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=3.3e-12 Score=120.63 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.2
Q ss_pred CCCcEEEEEeec--CCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEE
Q 019494 133 PESNVLLASIEN--MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKL 208 (340)
Q Consensus 133 ~~s~vl~v~v~n--l~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l 208 (340)
.+++.|+ |+| |+..+|+|+|+++|++||+|++|+|.+ ++|| |||+|++.++|++|++.|||.++.+. | ...|
T Consensus 16 ~ps~~l~--VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLV--VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEE--EETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSE-EEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEE--EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 4577888 666 688999999999999999999998876 4576 99999999999999999999998422 1 2268
Q ss_pred EEEeec
Q 019494 209 HISYSR 214 (340)
Q Consensus 209 ~v~~ak 214 (340)
.|+|++
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 889985
No 347
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=2.7e-12 Score=102.51 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=57.2
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 91 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~ 91 (340)
++||++.|++||+|.+|.+.+...+++|||+|.+.++|.+|++.|||+.+ .|+.|+|+|+....
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f---------~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF---------AGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEEECHHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEEcHHH
Confidence 67899999999999999998755567899999999999999999999984 69999999987543
No 348
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=1e-11 Score=113.16 Aligned_cols=77 Identities=19% Similarity=0.376 Sum_probs=69.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEee
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 213 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~a 213 (340)
.+++|+ |+||+.++|+++|+++|+.||.|..|+|.+.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 21 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~-afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~a 93 (261)
T 3sde_A 21 QRCRLF--VGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GF-GFIRLESRTLAEIAKAELDGTILKSR---PLRIRFA 93 (261)
T ss_dssp GGGEEE--EESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cE-EEEEECCHHHHHHHHHHcCCcEECCc---eeEeeec
Confidence 356666 89999999999999999999999999997654 65 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 019494 214 RHTD 217 (340)
Q Consensus 214 k~~~ 217 (340)
++..
T Consensus 94 ~~~~ 97 (261)
T 3sde_A 94 THGA 97 (261)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7653
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.28 E-value=1.9e-12 Score=105.22 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=63.2
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCee--EEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~--~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
..+|+ |+||++++|+++|+++|+.| .|+ .|+|..+ .+|+ |||+|++.++|.+|++. ++..|.++ .|
T Consensus 42 ~~~lf--VgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf-aFV~F~~~e~A~~Al~~-~~~~l~gR---~I 113 (126)
T 2hgm_A 42 DGFVR--LRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE-AFVQFASQELAEKALGK-HKERIGHR---YI 113 (126)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSE-EEEEESSTTHHHHHHTT-TTCCBTTB---CC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceE-EEEEECCHHHHHHHHHH-CCCEECCE---EE
Confidence 45555 99999999999999999999 677 8887643 3576 99999999999999985 77999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|..+..++
T Consensus 114 ~V~~a~~~e 122 (126)
T 2hgm_A 114 EVFKSSQEE 122 (126)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 998876543
No 350
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=102.54 Aligned_cols=76 Identities=13% Similarity=0.017 Sum_probs=63.3
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCc---eeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 77 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~---V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~ 77 (340)
...+|||++++. +|+||+++|+.||. |.+|.++. +.++++|||+|.+.++|++|++ ||+.. +
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~---------~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY---------M 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC---------S
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce---------e
Confidence 345688888873 37999999999998 89998875 3456789999999999999999 99987 4
Q ss_pred CCceEEEeeccCCc
Q 019494 78 GPCTLRITYSAHTD 91 (340)
Q Consensus 78 ~~~~l~v~~s~~~~ 91 (340)
.|+.|+|.+++.++
T Consensus 80 ~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 80 GQRYVEVYEINNED 93 (107)
T ss_dssp SSSCCCCEECCHHH
T ss_pred CCeEEEEEECCHHH
Confidence 79999999987553
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=4.9e-12 Score=99.56 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
++||++.|++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||+.+ .|++|+|+|+...
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f---------~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF---------ANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECHH
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe---------CCCEEEEEEeCHH
Confidence 4799999999999999998762 2467899999999999999999999985 6999999998754
No 352
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.4e-12 Score=102.43 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=57.5
Q ss_pred eecCCCCCCHHHHHHHH------------cccCCeeEEEEEcCC----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCc
Q 019494 142 IENMQYAVTLDVLHMVF------------SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 205 (340)
Q Consensus 142 v~nl~~~vt~~~L~~~F------------~~fG~v~~v~i~~~~----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~ 205 (340)
+.+|+..+|+++|+++| ++||+|++|+|.+.. +|+ |||+|.+.++|.+|++.|||..+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~-~fV~f~~~~~A~~A~~~lng~~~~Gr-- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ-- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEE-EEEEECCHHHHHHHHHHHCCCEECCE--
Confidence 34565667777776666 999999999998643 576 99999999999999999999999999
Q ss_pred cEEEEEee
Q 019494 206 CKLHISYS 213 (340)
Q Consensus 206 ~~l~v~~a 213 (340)
.|+|+|+
T Consensus 97 -~i~v~~s 103 (104)
T 1jmt_A 97 -PIHAELS 103 (104)
T ss_dssp -ECCEEEC
T ss_pred -EEEEEEc
Confidence 9999986
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=3.4e-12 Score=96.69 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred ccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||++++.+ |++|+++|++||+|.+|.++++ +++||||+|.+.++|++| ++..+. +.+++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~-------~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI-------IKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE-------ETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce-------eCCEEEE
Confidence 5678999998854 8999999999999999998765 566899999999999754 555432 5799999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|.+++.+
T Consensus 72 v~~a~~~ 78 (88)
T 1wf0_A 72 ISNAEPK 78 (88)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998765
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=8.2e-12 Score=100.33 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=55.6
Q ss_pred HHHHHHhhcccCceeEEEEeeec--------CCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKT--------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~--------~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
|+||++.|++||+|.+|++.+.. ++++|||+|.+.++|.+|++.|||+.+ .|++|+|+|+...
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f---------~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQE 109 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECHH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE---------CCcEEEEEEcChH
Confidence 78999999999999999887732 236899999999999999999999984 6999999998753
No 355
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.26 E-value=1e-11 Score=107.29 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=66.3
Q ss_pred CCcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEE
Q 019494 134 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 208 (340)
Q Consensus 134 ~s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l 208 (340)
.+++|+ |+||+.++|+++|+++|+.||.|.+|+|.... +|+ |||+|.+.++|.+|++. ++..|.|+ .|
T Consensus 12 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~-~~~~~~g~---~l 84 (196)
T 1l3k_A 12 QLRKLF--IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF-GFVTYATVEEVDAAMNA-RPHKVDGR---VV 84 (196)
T ss_dssp GGGEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHT-CSCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccce-EEEEeCCHHHHHHHHhc-CCCEECCE---Ee
Confidence 356766 89999999999999999999999999987542 355 99999999999999976 99999998 99
Q ss_pred EEEeecCCC
Q 019494 209 HISYSRHTD 217 (340)
Q Consensus 209 ~v~~ak~~~ 217 (340)
+|.++....
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999987653
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=5.1e-12 Score=99.25 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHhh-cccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494 20 GERAHVF-SAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 87 (340)
Q Consensus 20 e~L~~lF-~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s 87 (340)
+||++.| ++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||+.+ .|++|+|+|+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---------~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---------NGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---------CCEEEEEEEc
Confidence 5566666 99999999999863 3577899999999999999999999984 6999999986
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.26 E-value=2.4e-12 Score=100.24 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=62.7
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeee---cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCc
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 80 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~---~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~ 80 (340)
+..+|||++++. +|++|+++|+.||.|.+|.+++. ..++||||+|.+.++|++|++ ++.. +.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~---------~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN---------FHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE---------ETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe---------ECCE
Confidence 456889999884 48999999999999999988762 345789999999999999998 7776 4799
Q ss_pred eEEEeeccCC
Q 019494 81 TLRITYSAHT 90 (340)
Q Consensus 81 ~l~v~~s~~~ 90 (340)
.|.|.++..+
T Consensus 77 ~l~v~~a~~~ 86 (102)
T 2xs2_A 77 KLKLGPAIRK 86 (102)
T ss_dssp ECEEEEEEEC
T ss_pred EEEEEECCcC
Confidence 9999988744
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.26 E-value=6.8e-12 Score=101.24 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=61.4
Q ss_pred EEeecC----CCCCCHHHHHHHHcccCCeeEEEEEcCC-----CCeEEEEEcCC----hHH----HHHHHH--HhcCCee
Q 019494 140 ASIENM----QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPD----VQT----AVVAKE--ALEGHCI 200 (340)
Q Consensus 140 v~v~nl----~~~vt~~~L~~~F~~fG~v~~v~i~~~~-----~g~~afV~F~~----~~~----A~~A~~--~lng~~i 200 (340)
|+|+|| ++.+++++|+++|+.||+|.+++++.+. +|| |||+|.| .++ |.+|++ .|||..|
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf-gfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV-YLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE-EEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE-EEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 448999 9999999999999999999999987543 466 9999996 333 889988 7899999
Q ss_pred CCCCccEEEEEeecCC
Q 019494 201 YDGGFCKLHISYSRHT 216 (340)
Q Consensus 201 ~~~~~~~l~v~~ak~~ 216 (340)
.|+ .|+|.+-+..
T Consensus 84 ~Gr---~irV~ln~~g 96 (136)
T 2j8a_A 84 MGF---KFEVILNKHS 96 (136)
T ss_dssp TTE---EEEEEECCTT
T ss_pred cCc---EEEEEECccc
Confidence 999 9999986544
No 359
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.2e-12 Score=99.26 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=61.0
Q ss_pred ccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
..|||++++- +|+||+++|+.| .|.+|.++. +.++++|||+|.+.++|++|+ .||+..| .++.|
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---------~gr~i 85 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---------IQRYV 85 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---------TTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---------CCeEE
Confidence 4688888874 489999999999 899998875 345678999999999999999 7999874 69999
Q ss_pred EEeeccCC
Q 019494 83 RITYSAHT 90 (340)
Q Consensus 83 ~v~~s~~~ 90 (340)
+|..++.+
T Consensus 86 ~V~~a~~~ 93 (109)
T 2dnn_A 86 EVSPATER 93 (109)
T ss_dssp EEEECCHH
T ss_pred EEEECCcc
Confidence 99887654
No 360
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.25 E-value=2.9e-12 Score=105.95 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred cccccCCCCCCC--HHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 7 LSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 7 ~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
...|||.+++.+ |+||+++|+.|| |.+|.++. +.+++||||+|.+.++|++|| .+|+.. +.++.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~---------l~gR~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN---------MQHRY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS---------SSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE---------ECCEE
Confidence 346899988854 899999999999 66888875 235678999999999999999 789987 46999
Q ss_pred EEEeeccCCc
Q 019494 82 LRITYSAHTD 91 (340)
Q Consensus 82 l~v~~s~~~~ 91 (340)
|+|..++..+
T Consensus 115 i~V~~a~~~~ 124 (139)
T 2hgn_A 115 IELFLNSTTG 124 (139)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999887653
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.21 E-value=1.7e-11 Score=107.02 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=64.1
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 210 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v 210 (340)
+++|+ |+||+.++|+++|+++|+.||.|..|+|... .+|+ |||+|++.++|.+|++.++ ..+.|+ .|+|
T Consensus 109 ~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~-aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V 181 (193)
T 2voo_A 109 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVETPG-QKYKET---DLLI 181 (193)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESSHHHHHHHHHCTT-CEETTE---ECEE
T ss_pred cCEEE--ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHhCC-CeECCE---EEEE
Confidence 45666 8999999999999999999999999998753 2465 9999999999999998765 489998 9999
Q ss_pred EeecCC
Q 019494 211 SYSRHT 216 (340)
Q Consensus 211 ~~ak~~ 216 (340)
.+++.-
T Consensus 182 ~~~~~y 187 (193)
T 2voo_A 182 LFKDDY 187 (193)
T ss_dssp EETTTC
T ss_pred EEhHHH
Confidence 986643
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.21 E-value=1.2e-11 Score=104.96 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=63.6
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEE
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 83 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~ 83 (340)
+..+|||.+++. +|++|+++|++||+|..+ ...+.++++|||+|.+.++|.+|++.|||..| .|++|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---------TTEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEE
Confidence 456789998884 489999999999999887 22245677899999999999999999999884 699999
Q ss_pred EeeccCC
Q 019494 84 ITYSAHT 90 (340)
Q Consensus 84 v~~s~~~ 90 (340)
|+|++.+
T Consensus 168 v~~a~~k 174 (175)
T 1fje_B 168 LYYTGEK 174 (175)
T ss_dssp EEECSSC
T ss_pred EEecCCC
Confidence 9998754
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=1.7e-11 Score=115.86 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred ccccccccCCCC--C--CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 4 IWPLSRKYLQWQ--L--SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 4 ~~~~~~~~l~~~--~--~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
-.|+..|||+|. . ++|++|+++|++||+|.+|++.+ +++||||+|.+.++|++|++.|||+.+.. ..|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~------~~g 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD------DLG 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEEC------TTS
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccc------ccC
Confidence 467888999884 2 56899999999999999998765 56789999999999999999999998621 223
Q ss_pred c--eEEEeecc
Q 019494 80 C--TLRITYSA 88 (340)
Q Consensus 80 ~--~l~v~~s~ 88 (340)
+ +|++.|.+
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 78899975
No 364
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.20 E-value=2.9e-11 Score=102.17 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
+++|+ |+|||.++|+++|+++|+.| | .|.++.+...+ |+ |||+|.+.++|.+|+ .|||..+.|+
T Consensus 4 ~~~l~--V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-g~-afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-TE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred ccEEE--EcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-CE-EEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 56666 89999999999999999999 7 78888887654 65 999999999999999 8999999998
Q ss_pred CccEEEEEeecCC
Q 019494 204 GFCKLHISYSRHT 216 (340)
Q Consensus 204 ~~~~l~v~~ak~~ 216 (340)
.|+|.+++..
T Consensus 79 ---~i~v~~~~~~ 88 (172)
T 2g4b_A 79 ---SLKIRRPHDY 88 (172)
T ss_dssp ---ECEEECCSSC
T ss_pred ---eeeecCCccc
Confidence 9999987654
No 365
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.20 E-value=2e-11 Score=119.45 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=66.3
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
+...|||+|++. +|++|+++|+.||+|.+|.|+. +..++||||+|.+.++|.+||+.|||..| .|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---------~g 171 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---------DG 171 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---------CC
Confidence 346899999984 4899999999999999998875 23567899999999999999999999984 69
Q ss_pred ceEEEeeccCC
Q 019494 80 CTLRITYSAHT 90 (340)
Q Consensus 80 ~~l~v~~s~~~ 90 (340)
+.|.|.|++..
T Consensus 172 r~i~V~~a~~~ 182 (437)
T 3pgw_S 172 RRVLVDVERGR 182 (437)
T ss_pred EEEEEEEeCCC
Confidence 99999999854
No 366
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.7e-11 Score=96.43 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=50.0
Q ss_pred cccccccCCCCCC--CHHHHHHhhcccCceeEEEEee-------ecCCceEEEEeCCHHHHHHHHHHhcC
Q 019494 5 WPLSRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDG 65 (340)
Q Consensus 5 ~~~~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~-------~~~~~~AFVeF~~~e~A~~Ai~~lng 65 (340)
....+|||++++. +|++|+++|++||+|. ++++. +.+++||||+|.+.++|++|++.|++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence 3567899999984 4899999999999999 65554 14577999999999999999999943
No 367
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=8.1e-12 Score=101.11 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=61.3
Q ss_pred ccccccCCCCCC--CHHHHHHhhcccCce----eEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCC
Q 019494 6 PLSRKYLQWQLS--ASGERAHVFSAFGFV----HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 76 (340)
Q Consensus 6 ~~~~~~l~~~~~--~ee~L~~lF~~fG~V----~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~ 76 (340)
....|||.+++- +|+||+++|+.||+| .+|.+++ +.++++|||+|.+.++|++|++. |+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~--------- 91 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL--------- 91 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE---------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe---------
Confidence 345788888884 489999999999986 5787765 23467899999999999999985 8876
Q ss_pred CCCceEEEeeccCCc
Q 019494 77 MGPCTLRITYSAHTD 91 (340)
Q Consensus 77 ~~~~~l~v~~s~~~~ 91 (340)
+.++.|+|..++.++
T Consensus 92 l~gR~i~V~~a~~~e 106 (123)
T 2dha_A 92 LGKRYIELFRSTAAE 106 (123)
T ss_dssp SSSCEECCEEECHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 469999998887553
No 368
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=4.3e-11 Score=103.40 Aligned_cols=75 Identities=20% Similarity=0.373 Sum_probs=65.3
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc----C-------CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~f----G-------~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
+++|+ |+||+.++|+++|+++|+.| | .|.++.+... +|+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus 4 ~~~l~--V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~-afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNF-AFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTE-EEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred eeEEE--EcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCE-EEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 56666 89999999999999999999 5 6777777654 465 999999999999999 8999999998
Q ss_pred CccEEEEEeecCCC
Q 019494 204 GFCKLHISYSRHTD 217 (340)
Q Consensus 204 ~~~~l~v~~ak~~~ 217 (340)
.|+|.+++...
T Consensus 79 ---~i~v~~~~~~~ 89 (198)
T 2yh0_A 79 ---SLKIRRPHDYQ 89 (198)
T ss_dssp ---EEEEECCCCCC
T ss_pred ---eEEEeCCCCCC
Confidence 99999887653
No 369
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.17 E-value=1.2e-11 Score=100.51 Aligned_cols=74 Identities=20% Similarity=0.106 Sum_probs=59.9
Q ss_pred cccccCCCCCC--CHHHHHHhhcccCcee--EEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Q 019494 7 LSRKYLQWQLS--ASGERAHVFSAFGFVH--KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 79 (340)
Q Consensus 7 ~~~~~l~~~~~--~ee~L~~lF~~fG~V~--~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~ 79 (340)
...|||++++. +|+||+++|+.| .|. +|+++. +.+++||||+|.+.++|++|++ +++.. +.|
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~---------l~g 110 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKER---------IGH 110 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCC---------BTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCE---------ECC
Confidence 45688888884 389999999999 566 887765 3456789999999999999998 47766 479
Q ss_pred ceEEEeeccCCc
Q 019494 80 CTLRITYSAHTD 91 (340)
Q Consensus 80 ~~l~v~~s~~~~ 91 (340)
+.|+|..++.++
T Consensus 111 R~I~V~~a~~~e 122 (126)
T 2hgm_A 111 RYIEVFKSSQEE 122 (126)
T ss_dssp BCCCCEEECHHH
T ss_pred EEEEEEECCHHH
Confidence 999999886543
No 370
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.17 E-value=3.7e-11 Score=101.00 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=63.4
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcC-----CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~-----~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
+++|+ |+||+.++|+++|+++|+.||.|.+|++... ++|+ |||+|.+.++|.+|++. +..+.|+ .|+
T Consensus 3 ~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~--~~~~~g~---~i~ 74 (167)
T 2cjk_A 3 SCKMF--IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF-GFLSFEKPSSVDEVVKT--QHILDGK---VID 74 (167)
T ss_dssp GGEEE--ECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSC-EEEEESSTHHHHHHHHS--CCEETTE---ECC
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccce-EEEEEccHHHHHHHHhc--ccccCCe---Ecc
Confidence 55666 8999999999999999999999999998754 2466 99999999999999984 6678887 888
Q ss_pred EEeecCC
Q 019494 210 ISYSRHT 216 (340)
Q Consensus 210 v~~ak~~ 216 (340)
|.++...
T Consensus 75 v~~~~~~ 81 (167)
T 2cjk_A 75 PKRAIPR 81 (167)
T ss_dssp CEECCCH
T ss_pred cccccch
Confidence 8887643
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.09 E-value=1e-10 Score=102.02 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=60.3
Q ss_pred ccccCCCCCC--CHHHHHHhhcccCceeEEEEee---ecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 8 SRKYLQWQLS--ASGERAHVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 8 ~~~~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~---~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
..|||++++. ++++|+++|++||+|.+|++.+ +..+++|||+|.+.++|.+|++.++ .. +.|++|
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~---------~~Gr~l 179 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QK---------YKETDL 179 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CE---------ETTEEC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-Ce---------ECCEEE
Confidence 4689988884 4899999999999999998876 3356789999999999999997654 45 479999
Q ss_pred EEeeccC
Q 019494 83 RITYSAH 89 (340)
Q Consensus 83 ~v~~s~~ 89 (340)
+|.+++.
T Consensus 180 ~V~~~~~ 186 (193)
T 2voo_A 180 LILFKDD 186 (193)
T ss_dssp EEEETTT
T ss_pred EEEEhHH
Confidence 9998663
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.3e-10 Score=85.04 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCCcEEEEEeecC-C-CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCcc
Q 019494 133 PESNVLLASIENM-Q-YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 206 (340)
Q Consensus 133 ~~s~vl~v~v~nl-~-~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~ 206 (340)
|+.-+++|.+.+- + .+.-+ .+|.+.|++||+|..+++...+ +||+|.|.++|.+|++ |||..+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr--- 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR--- 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE---
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe---
Confidence 4566777766542 1 12333 5789999999999999998743 9999999999999998 999999999
Q ss_pred EEEEEeecCC
Q 019494 207 KLHISYSRHT 216 (340)
Q Consensus 207 ~l~v~~ak~~ 216 (340)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999986643
No 373
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.09 E-value=4.7e-11 Score=96.36 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=58.7
Q ss_pred cccCCCC----C--CCHHHHHHhhcccCceeEEEEee----ecCCceEEEEeCC----HHH----HHHHHH--HhcCCCC
Q 019494 9 RKYLQWQ----L--SASGERAHVFSAFGFVHKITTFE----KTAGFQALVQFSD----TET----ASSAKN--ALDGRSI 68 (340)
Q Consensus 9 ~~~l~~~----~--~~ee~L~~lF~~fG~V~~v~~~~----~~~~~~AFVeF~~----~e~----A~~Ai~--~lng~~i 68 (340)
.||++++ + ++|++|+++|+.||+|.++.++. +.+++||||+|.| .++ |.+|+. .|||..|
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 5677666 4 34899999999999999998876 3467889999996 433 889988 7899885
Q ss_pred CccCCCCCCCCceEEEeeccCCc
Q 019494 69 PRYLLPENMGPCTLRITYSAHTD 91 (340)
Q Consensus 69 ~~~~~~~~~~~~~l~v~~s~~~~ 91 (340)
.|++|+|.+-+...
T Consensus 84 ---------~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 84 ---------MGFKFEVILNKHSI 97 (136)
T ss_dssp ---------TTEEEEEEECCTTH
T ss_pred ---------cCcEEEEEECcccH
Confidence 69999999877553
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2e-09 Score=86.37 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCcEEEEEeecCCCC-CCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCC-hHHHHHHHHHhc--CCeeCCCCccEE
Q 019494 133 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFCKL 208 (340)
Q Consensus 133 ~~s~vl~v~v~nl~~~-vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~-~~~A~~A~~~ln--g~~i~~~~~~~l 208 (340)
+.+.+|+ |.||++. +|+++|+++|+.||+|..|.+..... .|||+|.+ .++|.+|++.|| |..|.+. .+
T Consensus 16 ~~G~il~--v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~ 88 (121)
T 1owx_A 16 KIGCLLK--FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK---EV 88 (121)
T ss_dssp CCCCEEE--EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred cCCeEEE--EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence 3466766 8899999 99999999999999999999987765 69999999 899999999995 6677776 67
Q ss_pred EEEee
Q 019494 209 HISYS 213 (340)
Q Consensus 209 ~v~~a 213 (340)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=82.06 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=50.7
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
.+|.+.|++||+|..+++... .+||+|.+.++|.+|++ |||..+ .|+.|+|++++..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v---------~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKEL---------LNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEE---------TTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEe---------CCeEEEEEeCCCC
Confidence 679999999999999998863 29999999999999998 999984 7999999987643
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=4.5e-09 Score=79.85 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=57.9
Q ss_pred CCCCcEEEEEeecCC---CCCCH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCC
Q 019494 132 EPESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 204 (340)
Q Consensus 132 ~~~s~vl~v~v~nl~---~~vt~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~ 204 (340)
.|+.-+++|.+.+-. .+.-+ .+|.+.|+.||+|+.|++... .+||+|.|.++|.+|++ |||.++.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~Gr- 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGR- 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCCe-
Confidence 356667776654311 11222 468899999999999999865 39999999999999998 999999999
Q ss_pred ccEEEEEe
Q 019494 205 FCKLHISY 212 (340)
Q Consensus 205 ~~~l~v~~ 212 (340)
.|+|++
T Consensus 86 --~L~V~~ 91 (95)
T 1ufw_A 86 --AVKISG 91 (95)
T ss_dssp --EEEEEC
T ss_pred --EEEEec
Confidence 999986
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.9e-08 Score=78.03 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=64.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHccc-----CCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~f-----G~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.+++. +.|+|+.|++..++.+.+.+ |.|++|.+.++..| |+|+|.|...|.+|...|||.+|.|+ +|+
T Consensus 21 ~rtia--L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G--Aivef~d~~~AgKasLaL~G~ef~gr---~Lr 93 (117)
T 2l9w_A 21 ETLIC--LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG--AIIIFRDSKFAAKMLMILNGSQFQGK---VIR 93 (117)
T ss_dssp TSCEE--EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE--EEEECSCHHHHHHHHHHHSSEEETTE---EEE
T ss_pred CcEEE--EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc--eEEEEccchhhHHHHhhcCCeeecCe---EEE
Confidence 34555 77999999999999999999 99999999988863 99999999999999999999999998 999
Q ss_pred EEe
Q 019494 210 ISY 212 (340)
Q Consensus 210 v~~ 212 (340)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 873
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=2e-08 Score=88.81 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=55.6
Q ss_pred HHHHHHhhcccCceeEEEEeee--------cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 90 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~--------~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~ 90 (340)
++||++.|++||+|.+|.+.+. ..++++||+|.+.++|.+|++.|||+.+ .||+|+++|+...
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---------~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQE 213 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEECCHH
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---------CCeEEEEEEcCHH
Confidence 7899999999999999988752 3457899999999999999999999984 7999999998744
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.1e-08 Score=77.80 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=48.3
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeec
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 87 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s 87 (340)
.+|.+.|+.||+|..|++.... +||+|.+.++|.+||+ |||..| .|+.|+|++.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v---------~Gr~L~V~~k 92 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV---------KGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE---------TTEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee---------CCeEEEEecc
Confidence 5699999999999999987632 9999999999999998 999995 7999999874
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=3.5e-08 Score=87.32 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=56.6
Q ss_pred CCHHHHHHHHcccCCeeEEEEEcC---------CCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEeecCCC
Q 019494 149 VTLDVLHMVFSAFGPVQKIAMFDK---------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 217 (340)
Q Consensus 149 vt~~~L~~~F~~fG~v~~v~i~~~---------~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ak~~~ 217 (340)
-.+++|++.|++||+|.+|+|.+. .+|+ +||+|.+.++|.+|++.|||..+.|+ .|+++|+...+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~-~fv~f~~~~~a~~a~~~l~gr~~~gr---~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRWFAGR---KVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeE-EEEEECCHHHHHHHHHHhcCceECCe---EEEEEEcCHHH
Confidence 346789999999999999998632 2365 99999999999999999999999999 99999987554
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=3e-07 Score=73.66 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=55.9
Q ss_pred ccccccCCCCC---CCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCC-HHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 6 PLSRKYLQWQL---SASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSD-TETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 6 ~~~~~~l~~~~---~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~-~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
+-+.||++++. +++++|+++|+.||+|..|.+.+... .|||+|.+ .++|.+|++.||.-.+- +.+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~-------i~g~~ 87 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQ-------LRNKE 87 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBC-------TTSSS
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcE-------EeCcE
Confidence 34456665443 44899999999999999999877432 49999999 89999999999633321 56777
Q ss_pred EEEeecc
Q 019494 82 LRITYSA 88 (340)
Q Consensus 82 l~v~~s~ 88 (340)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7777654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.5e-05 Score=61.83 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=54.1
Q ss_pred cCCCCCCCHHHHHHhhccc-----CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEe
Q 019494 11 YLQWQLSASGERAHVFSAF-----GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 85 (340)
Q Consensus 11 ~l~~~~~~ee~L~~lF~~f-----G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~ 85 (340)
.|+-..+ .+.|+.|.+++ |.|.+|.+.... ++ |+|+|.|...|-+|.-.|+|.+| .|++|+|.
T Consensus 28 ~ipDtvn-darIr~lve~~~~i~~g~i~KI~L~pDH-~G-Aivef~d~~~AgKasLaL~G~ef---------~gr~Lr~g 95 (117)
T 2l9w_A 28 PLSDKVS-PSLICQFLQEEIHINEKDIRKILLVSDF-NG-AIIIFRDSKFAAKMLMILNGSQF---------QGKVIRSG 95 (117)
T ss_dssp CCCTTCC-HHHHHHHHHHHTCCCTTTCSEEEEETTT-TE-EEEECSCHHHHHHHHHHHSSEEE---------TTEEEEEE
T ss_pred cCCCCCC-HHHHHHHHhhhhccCccceeEEEEecCC-Cc-eEEEEccchhhHHHHhhcCCeee---------cCeEEEec
Confidence 4454445 48999999999 999999987754 34 99999999999999999999996 59999997
Q ss_pred e
Q 019494 86 Y 86 (340)
Q Consensus 86 ~ 86 (340)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=3.7e-05 Score=59.29 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=62.4
Q ss_pred EEEEEeecCCCCC-CH----HHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEE
Q 019494 137 VLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 211 (340)
Q Consensus 137 vl~v~v~nl~~~v-t~----~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~ 211 (340)
.|+ |.||+.+| +. +.++++|..|+++.....++.=+ ..-|.|.+.++|.+|...|+++.+.|+ .|+|-
T Consensus 7 tLi--itnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~Y 79 (104)
T 1wey_A 7 GLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKLY 79 (104)
T ss_dssp EEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEEE
T ss_pred eEE--EecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEEE
Confidence 455 66887655 32 56789999999999988887665 599999999999999999999999999 99999
Q ss_pred eecCCC
Q 019494 212 YSRHTD 217 (340)
Q Consensus 212 ~ak~~~ 217 (340)
|+.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 998554
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.0011 Score=50.87 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=53.6
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcc-----cCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEE
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSA-----FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 209 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~-----fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~ 209 (340)
.+++. |.|+|..+++|.|.-.|++ =|+|+.|..+. . .|+|+|.|.+.|++.++. ..+.|.+. .|.
T Consensus 8 ~~~I~--V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls 77 (104)
T 2dhx_A 8 GVAVE--VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHGA---QLS 77 (104)
T ss_dssp CCEEE--EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred ccEEE--EECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence 44555 8899999999999999988 35999998877 2 599999999999998864 24566665 677
Q ss_pred EE
Q 019494 210 IS 211 (340)
Q Consensus 210 v~ 211 (340)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.00093 Score=52.81 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=48.7
Q ss_pred EEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCC
Q 019494 139 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 203 (340)
Q Consensus 139 ~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~ 203 (340)
+|+|.+.+... .+.+.+.|++||+|++..... ... .-.|.|+++.+|++||.. ||..|.+.
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~N-WihI~Y~s~~~A~rAL~k-NG~ii~g~ 86 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGN-WMHIRYQSKLQARKALSK-DGRIFGES 86 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSS-EEEEEESSHHHHHHHHTT-TTCEETTT
T ss_pred EEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCC-eEEEEeCCHHHHHHHHHh-CCeEecCC
Confidence 46688887664 567788899999999987733 223 599999999999999975 99988764
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.00069 Score=52.15 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceEEEeeccCCc
Q 019494 20 GERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 91 (340)
Q Consensus 20 e~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l~v~~s~~~~ 91 (340)
+.++++|..|+++.....++.-+ -..|.|.+.|+|.+|...|++..+ .|+.++|-|++...
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f---------~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEF---------LGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEE---------TTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhcccee---------cCceeEEEecCCCC
Confidence 67899999999999988887322 399999999999999999999985 69999999998553
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.70 E-value=0.012 Score=44.31 Aligned_cols=75 Identities=12% Similarity=0.260 Sum_probs=56.2
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCC------CeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEEEEE
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG------GLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHIS 211 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~------g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l~v~ 211 (340)
|.|.+||+++|+|++.+.++...++.-......+. -..|+|.|.+.+++..-.+.++|+.+.+. | ...-.|+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE 83 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVE 83 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEE
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEE
Confidence 44899999999999999999998876655543221 12499999999999999999999977543 2 2233456
Q ss_pred eec
Q 019494 212 YSR 214 (340)
Q Consensus 212 ~ak 214 (340)
||-
T Consensus 84 ~AP 86 (91)
T 1uw4_A 84 FAP 86 (91)
T ss_dssp ECS
T ss_pred EcC
Confidence 553
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.57 E-value=0.0075 Score=45.73 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=44.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhc
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 196 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~ln 196 (340)
..|++ + +.|.+....||.++|+.||.|. |+-..+. .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~--l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLH--V-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEE--E-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEE--E-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45555 5 8999999999999999999543 4433332 59999999999999999875
No 389
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.36 E-value=0.0021 Score=62.55 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=38.8
Q ss_pred cEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHH
Q 019494 136 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 193 (340)
Q Consensus 136 ~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~ 193 (340)
+.++|. .+..+++.+|.+.|++||.|.++.+...+ |.+|.|||.+.+++..++.
T Consensus 54 rsv~v~---~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH---CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE---ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE---cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 345543 46789999999999999999999888755 5679999999999997754
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.31 E-value=0.0076 Score=45.80 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=41.6
Q ss_pred cCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494 144 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 198 (340)
Q Consensus 144 nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~ 198 (340)
+.|.+....||.++|+.||.| .|+-..+. .|||.|.+++.|..|+..+...
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~~~ 62 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSKYA 62 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHTTC
T ss_pred eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcccC
Confidence 899999999999999999943 34433332 5999999999999999988643
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.08 E-value=0.0075 Score=45.73 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 64 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln 64 (340)
-+||.++|+.||-|.---+. +. .|||.|.+.+.|..|++.++
T Consensus 29 t~DI~~lFs~fggv~I~Wid---DT-sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWID---DT-SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEE---TT-EEEEECSCHHHHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEc---CC-eEEEEecCHHHHHHHHHhcc
Confidence 58999999999965433332 22 49999999999999999775
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.83 E-value=0.013 Score=46.13 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 13 QWQLSASGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 13 ~~~~~~ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
++-+.+-+.+.+.|++||+|.+.... ..++.-.|+|.+..+|++||. .||+.|
T Consensus 31 GFp~~~~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii 83 (119)
T 1wwh_A 31 GFPQASASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALS-KDGRIF 83 (119)
T ss_dssp CCCGGGHHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred CCCHHHHHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence 34444456788999999999999863 356789999999999999996 588775
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.69 E-value=0.0074 Score=45.89 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=32.8
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhc
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 64 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~ln 64 (340)
-.||.++|+.||-|.---+. +. .|||.|.+.+.|..|+..+.
T Consensus 19 t~Di~~lFs~fggv~I~Wid---DT-sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWID---DT-SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEE---TT-EEEEEEEEECHHHHHHHHHT
T ss_pred hHHHHHHHhccCCEEEEEEc---CC-eEEEEecCHHHHHHHHHhcc
Confidence 58999999999943322222 23 49999999999999999876
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.28 E-value=0.0093 Score=47.76 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEE-EEc------------C------CCCeEEEEEcCChHHHHHHHHHhcCCee
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD------------K------NGGLQALIQYPDVQTAVVAKEALEGHCI 200 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~-i~~------------~------~~g~~afV~F~~~~~A~~A~~~lng~~i 200 (340)
|+|.+.|...+ ..+.+.|++||.|++-. +.+ + ..+ ...|.|+++.+|.+||.. ||..|
T Consensus 10 VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~N-WikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 10 ILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNS-WTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETT-EEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCc-EEEEEcCCHHHHHHHHHh-CCeEe
Confidence 55778765555 55677899999998721 111 0 112 478999999999999975 99888
Q ss_pred CCCCccEEEEEeec
Q 019494 201 YDGGFCKLHISYSR 214 (340)
Q Consensus 201 ~~~~~~~l~v~~ak 214 (340)
.|. -|=|..-+
T Consensus 87 ~G~---mIGV~Py~ 97 (132)
T 3p3d_A 87 NGV---LLGVIPYT 97 (132)
T ss_dssp TTE---ECEEEECC
T ss_pred CcE---EEEEEECC
Confidence 663 66666543
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.26 E-value=0.0069 Score=59.00 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=33.8
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHH
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 61 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~ 61 (340)
|++|.+.|++||.|.++.+.+ ..|.||.|||.++++|..++.
T Consensus 66 ~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 66 ENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp -CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHS
T ss_pred HHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHh
Confidence 799999999999999999886 456789999999999997764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.55 E-value=0.069 Score=40.48 Aligned_cols=74 Identities=12% Similarity=0.253 Sum_probs=52.1
Q ss_pred EEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCC-------CCeEEEEEcCChHHHHHHHHHhcCCeeCCC-C-ccEEEE
Q 019494 140 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHI 210 (340)
Q Consensus 140 v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~-------~g~~afV~F~~~~~A~~A~~~lng~~i~~~-~-~~~l~v 210 (340)
|.|..||+.+|++++.+.++..=++........+ -. .|+|.|.+.++...-.+..+|+.+.+. | ...-.|
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~S-RAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~V 90 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYS-RAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVV 90 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCC-CCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcce-EEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEE
Confidence 4589999999999999888876544322222111 12 499999999999999999999977543 2 334456
Q ss_pred Eeec
Q 019494 211 SYSR 214 (340)
Q Consensus 211 ~~ak 214 (340)
+||-
T Consensus 91 E~AP 94 (97)
T 2l08_A 91 EFAP 94 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 6653
No 397
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.61 E-value=0.12 Score=39.57 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=44.4
Q ss_pred ccCCCCCC--CHHHHHHhhcc----c-CceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCceE
Q 019494 10 KYLQWQLS--ASGERAHVFSA----F-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 82 (340)
Q Consensus 10 ~~l~~~~~--~ee~L~~lF~~----f-G~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~l 82 (340)
|.+.+++. ++|.|+-+|+. - |+|.+|.... .-|+|+|.+.+.|++.+.. .... +.+.+|
T Consensus 11 I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~---------L~~~~L 76 (104)
T 2dhx_A 11 VEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHE---------LHGAQL 76 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCB---------SSSSBC
T ss_pred EEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccce---------ecCeEE
Confidence 34555553 37889999998 2 7899998765 3499999999999998852 1222 456667
Q ss_pred EEee
Q 019494 83 RITY 86 (340)
Q Consensus 83 ~v~~ 86 (340)
.|.-
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7653
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.62 E-value=0.18 Score=40.27 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHhhcccCceeEE-EEee-------------e----cCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCC
Q 019494 13 QWQLSASGERAHVFSAFGFVHKI-TTFE-------------K----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 74 (340)
Q Consensus 13 ~~~~~~ee~L~~lF~~fG~V~~v-~~~~-------------~----~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~ 74 (340)
++-......+.+.|++||.|.+- ...+ + ..+..-.|+|.+..+|.+|+. .||+.|
T Consensus 14 GFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii------ 86 (132)
T 3p3d_A 14 GYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF------ 86 (132)
T ss_dssp CCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE------
T ss_pred ecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe------
Confidence 34333467788999999999872 1110 0 134567999999999999995 688875
Q ss_pred CCCCCceEEEeecc
Q 019494 75 ENMGPCTLRITYSA 88 (340)
Q Consensus 75 ~~~~~~~l~v~~s~ 88 (340)
.|.-|-|....
T Consensus 87 ---~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 ---NGVLLGVIPYT 97 (132)
T ss_dssp ---TTEECEEEECC
T ss_pred ---CcEEEEEEECC
Confidence 56655565443
No 399
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.60 E-value=0.84 Score=34.03 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=44.0
Q ss_pred cCCCCCC--CHHHHHHhhcccCceeEEEEeeec------CCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 11 YLQWQLS--ASGERAHVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 11 ~l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~~------~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
=|+.+|. +|+++.+..+...++.-....+++ .-.-|+|.|.+.|++....+.++|..+
T Consensus 5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 3445553 389999999999887766665521 112299999999999999999999876
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.32 E-value=2.2 Score=41.89 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=44.0
Q ss_pred CcEEEEEeecCCCCCCHHHHHHHHcccCCeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCC
Q 019494 135 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 198 (340)
Q Consensus 135 s~vl~v~v~nl~~~vt~~~L~~~F~~fG~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~ 198 (340)
..+++ +. .+..+...+|.++|+.||.| .|+-+.+. +|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 45665 44 66678889999999999954 45544433 5999999999999999998643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.03 E-value=6 Score=38.76 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=34.7
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 66 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~ 66 (340)
..+|.++|+.||.| +|+-+. ...|||.|.+.+.|..+++.++..
T Consensus 453 ~~~i~~~fs~fg~v-~V~wid---dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 453 TSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp HHHHHHHGGGGCCC-EEEECS---SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCE-EEEEEc---CCeEEEEECCHHHHHHHHHHHHhC
Confidence 57999999999964 443332 235999999999999999998743
No 402
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=67.95 E-value=41 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=32.8
Q ss_pred CCHHHHHHHHcccC-CeeEEEEE-cCCCCeEEEEEcCChHHHHHHHHHhcCCeeC
Q 019494 149 VTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIY 201 (340)
Q Consensus 149 vt~~~L~~~F~~fG-~v~~v~i~-~~~~g~~afV~F~~~~~A~~A~~~lng~~i~ 201 (340)
-....+.+++...| .|..+... ...+. ...|+++|.+.|.++++. .|+++.
T Consensus 84 Gvla~i~~~L~~~~InI~~~~~~~~~~~~-~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 84 GALAKVLGFLSAEGVFIEYMYSFANNNVA-NVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEEETTEE-EEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred cHHHHHHHHHHHCCCCEEEEEEEccCCcE-EEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 34455666666666 66565554 32222 366789999999999887 677654
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.94 E-value=20 Score=24.92 Aligned_cols=68 Identities=6% Similarity=0.069 Sum_probs=39.9
Q ss_pred EEEEeecCCCCCCHHHHHHHHcccC-----CeeEEEEEcCCCCeEEEEEcCChHHHHHHHHHhcCCeeCCCCccEEEEEe
Q 019494 138 LLASIENMQYAVTLDVLHMVFSAFG-----PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 212 (340)
Q Consensus 138 l~v~v~nl~~~vt~~~L~~~F~~fG-----~v~~v~i~~~~~g~~afV~F~~~~~A~~A~~~lng~~i~~~~~~~l~v~~ 212 (340)
|++.++-. ..++.-+|...+..-+ .|-+|.|+.. +.||+-... .|..+++.|++..+.++ .++|+.
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g~---~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKGK---QLKVNK 73 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcCc---eEEEEE
Confidence 45444443 4556566666655544 4555666542 488887654 68889999999999998 777775
Q ss_pred ec
Q 019494 213 SR 214 (340)
Q Consensus 213 ak 214 (340)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 404
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=57.24 E-value=10 Score=28.39 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=36.0
Q ss_pred CCCCCC--CHHHHHHhhcccCceeEEEEeee------cCCceEEEEeCCHHHHHHHHHHhcCCCC
Q 019494 12 LQWQLS--ASGERAHVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSI 68 (340)
Q Consensus 12 l~~~~~--~ee~L~~lF~~fG~V~~v~~~~~------~~~~~AFVeF~~~e~A~~Ai~~lng~~i 68 (340)
|+.+|. +|+++.+.++.+=++.-.....+ ..-.-|+|.|.+.|+.....+.++|..+
T Consensus 14 IRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 14 IRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp EECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred EeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 455553 36776666665533322222221 1111299999999999999999999876
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.80 E-value=1.5e+02 Score=21.67 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=44.5
Q ss_pred ccccccccCCCCCCC--HHHHHHhhcccCceeEEEEeeecCCceEEEEeCCHHHHHHHHHHhcCCCCCccCCCCCCCCce
Q 019494 4 IWPLSRKYLQWQLSA--SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 81 (340)
Q Consensus 4 ~~~~~~~~l~~~~~~--ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~~e~A~~Ai~~lng~~i~~~~~~~~~~~~~ 81 (340)
|+.++-+-|-+++.- ..++--.....|.-.-+..+. ++|.|.|.+.++...|+..|-+.. ..+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkllnhn-----------nnk 73 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLNHN-----------NNK 73 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEETT-----------TTE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHhcC-----------CCE
Confidence 444444444444421 456555677778766666553 469999999999999999876643 566
Q ss_pred EEEee
Q 019494 82 LRITY 86 (340)
Q Consensus 82 l~v~~ 86 (340)
|.|+.
T Consensus 74 lqiei 78 (129)
T 4eyt_A 74 LQIEI 78 (129)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66663
No 406
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.78 E-value=11 Score=30.49 Aligned_cols=30 Identities=3% Similarity=0.109 Sum_probs=19.2
Q ss_pred HHHHHHhhcccCceeEEEEeeecCCceEEEEeCC
Q 019494 19 SGERAHVFSAFGFVHKITTFEKTAGFQALVQFSD 52 (340)
Q Consensus 19 ee~L~~lF~~fG~V~~v~~~~~~~~~~AFVeF~~ 52 (340)
|+|+.+||...|.|..... .++|+||+..+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~----~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV----RMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEEEEET----TTTEEEEEEEE
T ss_pred CCcccccccceeEEEEEEC----CCCeeEEeeCc
Confidence 4678889999998876642 56789999753
No 407
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.49 E-value=26 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=11.9
Q ss_pred CCeeEEEEEcCCCCeEEEEEcCCh
Q 019494 162 GPVQKIAMFDKNGGLQALIQYPDV 185 (340)
Q Consensus 162 G~v~~v~i~~~~~g~~afV~F~~~ 185 (340)
|+|++|. +.++ .+||+|+|-
T Consensus 28 GtV~kV~---~~~~-~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD---SARE-VCLVQFEDD 47 (68)
T ss_dssp EEEEEEE---TTTT-EEEEEETTT
T ss_pred eEEEEEe---cCCc-EEEEEEccC
Confidence 4555542 2234 499999874
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.62 E-value=1.5e+02 Score=21.41 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred cCCCCCCHHHHHHHHcc-cC-CeeEEEEEcCCCCe-EEEEEcCChHHHHHHHH
Q 019494 144 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 193 (340)
Q Consensus 144 nl~~~vt~~~L~~~F~~-fG-~v~~v~i~~~~~g~-~afV~F~~~~~A~~A~~ 193 (340)
..+...+..++++.++. |+ +|.+|......+|. -|+|....-.+|...-.
T Consensus 29 ~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 29 IVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 44557899999888766 66 78888755433332 59999988777765433
No 409
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=26.79 E-value=32 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=8.8
Q ss_pred CCCCeEEEEEcCCh
Q 019494 172 KNGGLQALIQYPDV 185 (340)
Q Consensus 172 ~~~g~~afV~F~~~ 185 (340)
+.+|. ++|+|+|-
T Consensus 39 ~~~gt-C~V~F~D~ 51 (66)
T 2eqj_A 39 ILKQS-CFIIFEDS 51 (66)
T ss_dssp TTTTE-EEEEETTT
T ss_pred cCCcE-EEEEEccC
Confidence 33454 99999874
No 410
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.19 E-value=33 Score=24.30 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=13.8
Q ss_pred CceeEEEEeeecCCceEEEEeCCHH
Q 019494 30 GFVHKITTFEKTAGFQALVQFSDTE 54 (340)
Q Consensus 30 G~V~~v~~~~~~~~~~AFVeF~~~e 54 (340)
|.|.+|.. .+..|||.|.|..
T Consensus 45 GTI~kV~~----~~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDS----AREVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEET----TTTEEEEEETTSC
T ss_pred EEEEEecc----CCCEEEEEEcCCC
Confidence 66666642 3456999998743
No 411
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.38 E-value=61 Score=32.55 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHhh--c--ccCceeEEEEe--ee-cCCceEEEEeCCHHHHHHHHHHhcCC
Q 019494 21 ERAHVF--S--AFGFVHKITTF--EK-TAGFQALVQFSDTETASSAKNALDGR 66 (340)
Q Consensus 21 ~L~~lF--~--~fG~V~~v~~~--~~-~~~~~AFVeF~~~e~A~~Ai~~lng~ 66 (340)
||..+| + .+|.|+++.+. +. .....++|.|.|.++|.+|+..+-..
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~ 411 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQ 411 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHc
Confidence 677777 3 78999998663 21 12235899999999999999877543
No 412
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.46 E-value=59 Score=31.55 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHhh--cccCceeEEEEee--ec-CCceEEEEeCCHHHHHHHHH
Q 019494 21 ERAHVF--SAFGFVHKITTFE--KT-AGFQALVQFSDTETASSAKN 61 (340)
Q Consensus 21 ~L~~lF--~~fG~V~~v~~~~--~~-~~~~AFVeF~~~e~A~~Ai~ 61 (340)
+|+.|| +.+|.|+++.+.- .. ....+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 456777 4799999986532 21 12237899999888776443
No 413
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.27 E-value=25 Score=23.89 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=6.6
Q ss_pred EEEEEcCCh
Q 019494 177 QALIQYPDV 185 (340)
Q Consensus 177 ~afV~F~~~ 185 (340)
.+||+|+|-
T Consensus 37 ~ClV~FeD~ 45 (63)
T 2e5q_A 37 SCLVTFEDN 45 (63)
T ss_dssp EEEEEETTS
T ss_pred EEEEEEccC
Confidence 488888764
No 414
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.99 E-value=51 Score=22.07 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=7.1
Q ss_pred EEEEEcCCh
Q 019494 177 QALIQYPDV 185 (340)
Q Consensus 177 ~afV~F~~~ 185 (340)
.++|+|+|.
T Consensus 33 ~clV~F~D~ 41 (58)
T 4hcz_A 33 VCLVQFEDD 41 (58)
T ss_dssp EEEEEETTS
T ss_pred EEEEEEcCC
Confidence 489999875
Done!