BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019497
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 26/196 (13%)

Query: 138 SKQSASIIKDAIYIVGSGSGDFLQNYYVNPLLNKVYTPEQYSSMLVNIFSSFIKNMYGLG 197
           ++Q      +A+Y +  G  DFLQ      +LN V   +Q +  LV+     ++ +   G
Sbjct: 138 ARQGLGADPNALYYITGGGNDFLQGR----ILNDVQA-QQAAGRLVDS----VQALQQAG 188

Query: 198 ARKFGVTSLPPLGCLPAARTLFGYHESGCVSRIN-TDAQQFNKKVSSAATNLQKQLPDLK 256
           AR   V  LP LG  PA    FG       S+++ T   +   ++S A  N         
Sbjct: 189 ARYIVVWLLPDLGLTPAT---FGGPLQPFASQLSGTFNAELTAQLSQAGAN--------- 236

Query: 257 IVIFDIFKPIYDLVQSPSKSGFVEAXXXXXXXXXXXXXXFLCNPKSP--GTCSNASQYVF 314
           ++  +I   + + + +P+  G   A                 NP     G+  + S+ +F
Sbjct: 237 VIPLNIPLLLKEGMANPASFGL--AADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLF 294

Query: 315 WDSVHPSQAANQVIAD 330
            DSVHP+    ++IAD
Sbjct: 295 NDSVHPTITGQRLIAD 310


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,327,054
Number of Sequences: 62578
Number of extensions: 368434
Number of successful extensions: 727
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)