BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019498
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 224/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YRPVDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 357 bits (916), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 223/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 357 bits (915), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHNTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 356 bits (914), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHXTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 356 bits (914), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 223/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 356 bits (914), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHQTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHETSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 164/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHDTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 353 bits (907), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 162/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 351 bits (900), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 162/335 (48%), Positives = 221/335 (65%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TY +GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 YRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 351 bits (900), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 222/335 (66%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V Q+RE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 350 bits (898), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 221/335 (65%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V RE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 221/335 (65%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V YRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 221/335 (65%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V QYRE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TS DS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSADSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 221/335 (65%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+Y M L TMD I YE+QRQGRISFY+T GEE N D V Q RE GVL
Sbjct: 60 LYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVL 119
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K
Sbjct: 120 MYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q+R DG
Sbjct: 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGI 239
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+
Sbjct: 240 AARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSA 299
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
+R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE+ KP
Sbjct: 300 FRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPN 359
Query: 301 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 335
+ LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 360 PNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 188/329 (57%), Gaps = 4/329 (1%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKND-DFVVPQYREPGV 59
+Y DM+ + +D + R G+ SF +G E + D+V P YR+ G+
Sbjct: 41 LYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGL 100
Query: 60 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 119
L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA ++
Sbjct: 101 ALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISM 160
Query: 120 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDG 179
K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q S
Sbjct: 161 KLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPT 220
Query: 180 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDDS 238
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 221 IADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADDD 279
Query: 239 TKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEK 298
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 280 SRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGP 338
Query: 299 PPISDLFTDVYDVSPSNLREQEHSLRETI 327
P +F DV+ P +L QE L+E +
Sbjct: 339 VPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+ MV + +D RQGR+ FY T+G+E + +DF++P YR+ +
Sbjct: 49 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQI 108
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
+W G + Q F + G Q+P N I Q A G A LK
Sbjct: 109 IWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLK 159
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
M K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP+ Q +
Sbjct: 160 MRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTL 219
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDS 238
K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R G HT S DD
Sbjct: 220 AQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRYGPHTMSGDDP 278
Query: 239 TKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 297
T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I A+++A++
Sbjct: 279 TRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETP 336
Query: 298 KPPISDLFTDVYDVSPSNLREQEHSLRE 325
K ++DL + +++ P NL+EQ +E
Sbjct: 337 KQKVTDLISIMFEELPFNLKEQYEIYKE 364
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+ MV + +D RQGR+ FY T+G+E + +DF++P YR+ +
Sbjct: 50 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQI 109
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
+W G + Q F + G Q+P N I Q A G A LK
Sbjct: 110 IWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLK 160
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
M K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP+ Q +
Sbjct: 161 MRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTL 220
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDS 238
K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R G HT S DD
Sbjct: 221 AQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRYGPHTMSGDDP 279
Query: 239 TKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 297
T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I A+++A++
Sbjct: 280 TRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETP 337
Query: 298 KPPISDLFTDVYDVSPSNLREQEHSLRE 325
K ++DL + +++ P NL+EQ +E
Sbjct: 338 KQKVTDLISIMFEELPFNLKEQYEIYKE 365
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+ MV + +D RQGR+ FY T+G+E + +DF++P YR+ +
Sbjct: 49 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQI 108
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
+W G + Q F + G Q+P N I Q A G A LK
Sbjct: 109 IWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLK 159
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
M K A A+TY GDGGTS+G+F+ +NF+ +AP IF+ +NN +AISTP+ Q +
Sbjct: 160 MRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTL 219
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDS 238
K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R G HT S DD
Sbjct: 220 AQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRYGPHTMSGDDP 278
Query: 239 TKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 297
T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I A+++A++
Sbjct: 279 TRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETP 336
Query: 298 KPPISDLFTDVYDVSPSNLREQEHSLRE 325
K ++DL + +++ P NL+EQ +E
Sbjct: 337 KQKVTDLISIMFEELPFNLKEQYEIYKE 364
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 182/328 (55%), Gaps = 15/328 (4%)
Query: 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
+ MV + +D RQGR+ FY T+G+E + +DF++P YR+ +
Sbjct: 50 LMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQI 109
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
+W G + Q F + G Q+P N I Q A G A LK
Sbjct: 110 IWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLK 160
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
M K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +A STP+ Q +
Sbjct: 161 MRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTPVEKQTVAKTL 220
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDS 238
K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R G HT S DD
Sbjct: 221 AQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRYGPHTMSGDDP 279
Query: 239 TKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 297
T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I A+++A++
Sbjct: 280 TRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETP 337
Query: 298 KPPISDLFTDVYDVSPSNLREQEHSLRE 325
K ++DL + +++ P NL+EQ +E
Sbjct: 338 KQKVTDLISIMFEELPFNLKEQYEIYKE 365
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 166/327 (50%), Gaps = 10/327 (3%)
Query: 5 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRG 64
M+ + D+ AQRQ ++SFY+ + GEE D P YR+ +L+ R
Sbjct: 84 MLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARD 143
Query: 65 FSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK 124
S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ AVG A A +
Sbjct: 144 VSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGD 203
Query: 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--PISDQFRSDGAVV 182
A + GDG T+E DFH AL F+ V APVI NN WAIST I+ S
Sbjct: 204 TKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG-ESTTFAG 262
Query: 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 242
+G G+ S+RVDGND +A+Y+A A E A P LIE +TYR G H+TSDD +KYR
Sbjct: 263 RGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR 322
Query: 243 PVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK------A 296
P D+ + DP+ R ++ + G W+ + + ++ A +EAE+
Sbjct: 323 PADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANG 381
Query: 297 EKPPISDLFTDVYDVSPSNLREQEHSL 323
P + +F DVY P +LR Q L
Sbjct: 382 HIPSAASMFEDVYKEMPDHLRRQRQEL 408
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 164/325 (50%), Gaps = 14/325 (4%)
Query: 9 QTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQ 68
+ D+ AQRQ + SFY + GEE D P YR+ +L R S+
Sbjct: 87 RIFDSRXVVAQRQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLV 146
Query: 69 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG--AAYALKMDRKDA 126
E Q N+ D KGRQ+PI Y + +FT+S +ATQ AVG A A+K D K A
Sbjct: 147 EXICQLLSNERDPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDTKIA 206
Query: 127 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--PISDQFRSDGAVVKG 184
A + GDG T+E DFH AL F+ V APVI NN WAIST I+ S +G
Sbjct: 207 SA--WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG-ESTTFAGRG 263
Query: 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPV 244
G+ S+RVDGND +A+Y+A A E A P LIE +TYR G H+TSDD +KYRP
Sbjct: 264 VGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPA 323
Query: 245 DEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK------AEK 298
D+ + DP+ R ++ + G W+ + + ++ A +EAE+
Sbjct: 324 DDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHI 382
Query: 299 PPISDLFTDVYDVSPSNLREQEHSL 323
P + F DVY P +LR Q L
Sbjct: 383 PSAASXFEDVYKEXPDHLRRQRQEL 407
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 139/313 (44%), Gaps = 5/313 (1%)
Query: 2 YNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
Y M T++ M+ + +Q I F G+E D ++ YR G
Sbjct: 57 YRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFT 116
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
RG S++E + G K KG+ +H + N++ + + Q+P G A A K
Sbjct: 117 FTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACK 174
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ KD +T +GDG ++G A N +A+ + P IFIC NN + + T + S
Sbjct: 175 YNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 234
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 235 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVS 292
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A +PP
Sbjct: 293 YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP 352
Query: 301 ISDLFTDVYDVSP 313
+ +L +Y P
Sbjct: 353 LEELGYHIYSSDP 365
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 139/313 (44%), Gaps = 5/313 (1%)
Query: 2 YNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
Y M T++ M+ + +Q I F G+E D ++ YR G
Sbjct: 57 YRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFT 116
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
RG S++E + G K KG+ +H + N++ + + Q+P G A A K
Sbjct: 117 FTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACK 174
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ KD +T +GDG ++G A N +A+ + P IFIC NN + + T + S
Sbjct: 175 YNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVERAAASTDY 234
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 235 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVA 292
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A +PP
Sbjct: 293 YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP 352
Query: 301 ISDLFTDVYDVSP 313
+ +L +Y P
Sbjct: 353 LEELGYHIYSSDP 365
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 5/313 (1%)
Query: 2 YNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
Y M T++ M+ + +Q I F G+E D ++ YR G
Sbjct: 57 YRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFT 116
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
RG S++E + G K KG+ +H + N++ + + Q+P G A A K
Sbjct: 117 FTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACK 174
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ KD +T +GDG ++G A N +A+ + P IFIC NN + + T + S
Sbjct: 175 YNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVERAAASTDY 234
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G + +RVDG D L + A A PIL+E TYR H SD
Sbjct: 235 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHXMSDPGVA 292
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A +PP
Sbjct: 293 YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP 352
Query: 301 ISDLFTDVYDVSP 313
+ +L +Y P
Sbjct: 353 LEELGYHIYSSDP 365
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 5/313 (1%)
Query: 2 YNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
Y M T++ M+ + +Q I F G+E D ++ YR G
Sbjct: 40 YRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFT 99
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
RG S++E + G K KG+ +H + N++ + + Q+P G A A K
Sbjct: 100 FTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACK 157
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ KD +T +GDG ++G A N +A+ + P IFIC NN + + T + S
Sbjct: 158 YNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 217
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G + +RVDG D L + A A PIL+E TYR H SD
Sbjct: 218 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVS 275
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A +PP
Sbjct: 276 YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP 335
Query: 301 ISDLFTDVYDVSP 313
+ +L +Y P
Sbjct: 336 LEELGYHIYSSDP 348
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 139/313 (44%), Gaps = 5/313 (1%)
Query: 2 YNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVL 60
Y M T++ M+ + +Q I F G+E D ++ +R G
Sbjct: 57 YRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAFRAHGFT 116
Query: 61 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 120
RG S++E + G K KG+ +H + N++ + + Q+P G A A K
Sbjct: 117 FTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACK 174
Query: 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 180
+ KD +T +GDG ++G A N +A+ + P IFIC NN + + T + S
Sbjct: 175 YNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 234
Query: 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240
+G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 235 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVS 292
Query: 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 300
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A +PP
Sbjct: 293 YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP 352
Query: 301 ISDLFTDVYDVSP 313
+ +L +Y P
Sbjct: 353 LEELGYHIYSSDP 365
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 4/288 (1%)
Query: 26 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 85
F G+E D ++ YR G RG S++E + G K KG+
Sbjct: 65 FCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGK 124
Query: 86 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 145
H + N++ + + Q+P G A A K + KD +T +GDG ++G A
Sbjct: 125 GGSXHXYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 182
Query: 146 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 205
N +A+ + P IFIC NN + T + S +G + +RVDG D L + A
Sbjct: 183 YNXAALWKLPCIFICENNRYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREA 240
Query: 206 VHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIE 265
A PIL E TYR H+ SD YR +EI+ R+ DP+ +
Sbjct: 241 TRFAAAYCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXV 300
Query: 266 SNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 313
++ + + E+ VRK+I A Q A +PP+ +L +Y P
Sbjct: 301 NSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 100 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 149
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 170
Query: 150 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 207
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 171 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 229
Query: 208 AAR 210
AR
Sbjct: 230 EAR 232
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 100 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 149
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 110 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 169
Query: 150 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 207
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 170 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 228
Query: 208 AAR 210
AR
Sbjct: 229 EAR 231
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 94 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 153
++H+ TV +T L +A+G A A KD GDG + G AALN
Sbjct: 115 SEHDAITVGHA-STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMG 173
Query: 154 APVIFICRNNGWAIS 168
++ + +N +IS
Sbjct: 174 RKMLIVLNDNEMSIS 188
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 102 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 159
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 120 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 179
Query: 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 219
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 180 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 233
Query: 220 ILIEALTYR 228
I A T++
Sbjct: 234 TAIIAKTFK 242
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 102 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 159
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 118 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 177
Query: 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 219
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 178 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 231
Query: 220 ILIEALTYR 228
I A T++
Sbjct: 232 TAIIAKTFK 240
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 162 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 214
N+GWA +Q + DG +++ R +G + I +DG+D A+ AR+ I
Sbjct: 24 NDGWAAVEKRFNQLQVDGVLLRSR-FG-KCIGMDGSDEFAVQMFDSLARKRGI 74
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 118 ALKMDRKDACAVTYFGDGGTS-----EGDFHAALNFSAVTEAPVIFICRNNGWAISTP 170
A +D K A AV+ G G S GD HA L+FS+ T+ P + + A +TP
Sbjct: 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ-PATVLALDPATAKTTP 446
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 105 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 150
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 151 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 182
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 105 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 150
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 151 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 182
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 157 IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 216
I I NN +T +D S+ + G V+G+D A A +
Sbjct: 313 IHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAF 372
Query: 217 GRPILIEALTYRVGHHTTSDDSTKYRP 243
+ ++I+ L YR H DD + +P
Sbjct: 373 KKDVVIDMLCYRRRGHNEGDDPSMTQP 399
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 157 IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 216
I I NN +T +D S+ + G V+G+D A A +
Sbjct: 558 IHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAF 617
Query: 217 GRPILIEALTYRVGHHTTSDDSTKYRP 243
+ ++I+ L YR H DD + +P
Sbjct: 618 KKDVVIDMLCYRRRGHNEGDDPSMTQP 644
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,500,710
Number of Sequences: 62578
Number of extensions: 436666
Number of successful extensions: 1165
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 44
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)