Query 019498
Match_columns 340
No_of_seqs 286 out of 2435
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.5E-88 3.2E-93 642.6 33.1 323 1-324 32-357 (358)
2 PLN02269 Pyruvate dehydrogenas 100.0 3.8E-79 8.2E-84 588.0 33.6 309 1-312 35-344 (362)
3 CHL00149 odpA pyruvate dehydro 100.0 2.4E-78 5.2E-83 580.4 34.6 309 1-311 25-341 (341)
4 TIGR03182 PDH_E1_alph_y pyruva 100.0 4.8E-78 1E-82 573.8 33.2 308 1-310 7-315 (315)
5 TIGR03181 PDH_E1_alph_x pyruva 100.0 5.7E-76 1.2E-80 564.9 34.0 313 1-323 29-341 (341)
6 KOG0225 Pyruvate dehydrogenase 100.0 8E-77 1.7E-81 544.5 25.2 310 1-314 64-374 (394)
7 PLN02374 pyruvate dehydrogenas 100.0 1.1E-75 2.4E-80 574.2 34.6 310 1-312 91-408 (433)
8 PF00676 E1_dh: Dehydrogenase 100.0 9.8E-74 2.1E-78 540.6 31.5 300 2-302 1-300 (300)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 5.9E-73 1.3E-77 534.7 34.1 292 1-293 1-293 (293)
10 KOG1182 Branched chain alpha-k 100.0 1.4E-73 3E-78 519.0 21.1 339 1-339 91-430 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 6E-58 1.3E-62 480.1 35.1 331 1-338 194-565 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5.6E-51 1.2E-55 425.9 33.0 333 2-338 195-566 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 7.3E-48 1.6E-52 354.2 19.8 216 28-244 15-262 (265)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.6E-33 3.5E-38 287.9 21.2 204 16-233 30-249 (581)
15 PRK12270 kgd alpha-ketoglutara 100.0 5.9E-32 1.3E-36 277.1 32.1 327 7-338 504-869 (1228)
16 COG3959 Transketolase, N-termi 100.0 1.4E-31 3E-36 235.5 21.2 173 47-228 63-242 (243)
17 cd02012 TPP_TK Thiamine pyroph 100.0 7.2E-29 1.6E-33 230.0 20.9 182 47-237 49-237 (255)
18 PRK12754 transketolase; Review 100.0 2.4E-27 5.2E-32 244.3 29.2 166 60-235 75-254 (663)
19 TIGR00232 tktlase_bact transke 100.0 2.8E-27 6E-32 244.9 29.1 167 59-235 70-250 (653)
20 PF00456 Transketolase_N: Tran 100.0 4E-28 8.6E-33 231.6 20.7 167 60-236 72-252 (332)
21 cd02007 TPP_DXS Thiamine pyrop 100.0 2.5E-28 5.5E-33 217.5 17.6 167 46-231 24-194 (195)
22 PRK05899 transketolase; Review 100.0 5E-27 1.1E-31 242.8 29.0 186 47-243 61-264 (624)
23 PTZ00089 transketolase; Provis 100.0 2.3E-27 5E-32 245.8 25.4 195 47-251 59-276 (661)
24 PRK12753 transketolase; Review 100.0 2.3E-27 5E-32 245.5 23.7 179 48-236 58-255 (663)
25 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.5E-26 3.3E-31 221.9 25.7 178 47-233 60-323 (386)
26 KOG0450 2-oxoglutarate dehydro 100.0 2.3E-26 5.1E-31 227.6 24.0 331 3-338 256-631 (1017)
27 PLN02790 transketolase 99.9 1.1E-26 2.3E-31 240.6 22.0 184 46-239 46-250 (654)
28 KOG0451 Predicted 2-oxoglutara 99.9 7.3E-26 1.6E-30 219.8 19.7 292 4-300 165-497 (913)
29 PRK05444 1-deoxy-D-xylulose-5- 99.9 1.7E-25 3.7E-30 229.5 22.2 177 46-235 66-250 (580)
30 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 2.1E-25 4.5E-30 229.6 21.2 181 42-235 55-282 (617)
31 COG0567 SucA 2-oxoglutarate de 99.9 9.6E-25 2.1E-29 224.5 25.4 307 28-338 204-547 (906)
32 cd02011 TPP_PK Thiamine pyroph 99.9 9.6E-26 2.1E-30 203.0 14.5 168 30-214 1-174 (227)
33 COG0021 TktA Transketolase [Ca 99.9 1.5E-24 3.3E-29 215.9 18.7 163 62-234 79-255 (663)
34 TIGR00759 aceE pyruvate dehydr 99.9 1.1E-23 2.4E-28 217.8 25.1 178 47-233 131-394 (885)
35 TIGR03186 AKGDH_not_PDH alpha- 99.9 2.5E-23 5.4E-28 217.5 25.7 182 47-235 131-396 (889)
36 PLN02234 1-deoxy-D-xylulose-5- 99.9 2E-23 4.3E-28 213.5 22.1 181 46-237 126-331 (641)
37 PRK12571 1-deoxy-D-xylulose-5- 99.9 4.1E-23 8.8E-28 213.4 22.4 178 46-235 68-291 (641)
38 KOG0523 Transketolase [Carbohy 99.9 1.1E-22 2.3E-27 200.7 20.6 218 4-233 13-247 (632)
39 PRK13012 2-oxoacid dehydrogena 99.9 3.5E-22 7.6E-27 209.7 24.4 179 46-233 144-408 (896)
40 PLN02582 1-deoxy-D-xylulose-5- 99.9 2.1E-22 4.5E-27 207.6 21.8 179 46-235 93-328 (677)
41 PRK09405 aceE pyruvate dehydro 99.9 1.9E-21 4E-26 203.6 23.8 177 47-232 137-399 (891)
42 PRK05261 putative phosphoketol 99.8 6.6E-20 1.4E-24 189.9 17.6 202 24-232 49-288 (785)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 7.7E-20 1.7E-24 159.6 12.9 113 102-226 47-171 (172)
44 cd02013 TPP_Xsc_like Thiamine 99.8 6.1E-20 1.3E-24 163.8 11.4 119 102-229 52-181 (196)
45 cd02006 TPP_Gcl Thiamine pyrop 99.8 1.4E-19 3E-24 162.2 11.6 120 102-229 56-196 (202)
46 cd02002 TPP_BFDC Thiamine pyro 99.8 3.4E-19 7.4E-24 156.2 13.6 113 102-226 48-178 (178)
47 cd00568 TPP_enzymes Thiamine p 99.8 2.3E-19 5.1E-24 155.1 11.7 116 99-226 42-168 (168)
48 PRK06163 hypothetical protein; 99.8 1.8E-18 3.8E-23 154.8 16.1 131 101-248 55-189 (202)
49 PRK11864 2-ketoisovalerate fer 99.8 3.7E-18 8.1E-23 160.1 18.3 172 53-231 14-211 (300)
50 cd03371 TPP_PpyrDC Thiamine py 99.8 2.5E-18 5.5E-23 152.4 15.3 118 101-230 46-166 (188)
51 cd02015 TPP_AHAS Thiamine pyro 99.8 2.1E-18 4.4E-23 152.6 12.4 115 102-228 49-175 (186)
52 cd02008 TPP_IOR_alpha Thiamine 99.8 5.2E-18 1.1E-22 149.1 14.3 118 100-226 48-176 (178)
53 COG1154 Dxs Deoxyxylulose-5-ph 99.8 1.3E-17 2.7E-22 165.9 18.7 197 26-235 43-287 (627)
54 PF13292 DXP_synthase_N: 1-deo 99.8 3.5E-18 7.6E-23 155.7 13.4 189 25-226 38-270 (270)
55 cd02003 TPP_IolD Thiamine pyro 99.8 2.4E-18 5.1E-23 154.6 12.0 117 101-229 46-186 (205)
56 cd02010 TPP_ALS Thiamine pyrop 99.8 3.3E-18 7.2E-23 150.2 12.5 115 102-228 47-171 (177)
57 cd02014 TPP_POX Thiamine pyrop 99.8 4.9E-18 1.1E-22 149.2 13.0 115 102-228 50-174 (178)
58 cd02001 TPP_ComE_PpyrDC Thiami 99.8 2.8E-18 6E-23 147.9 10.9 114 101-227 40-155 (157)
59 cd03372 TPP_ComE Thiamine pyro 99.8 1.2E-17 2.7E-22 146.9 13.7 116 101-230 40-158 (179)
60 TIGR03846 sulfopy_beta sulfopy 99.7 1E-17 2.3E-22 147.5 12.4 114 101-228 40-157 (181)
61 cd02005 TPP_PDC_IPDC Thiamine 99.7 2.3E-17 4.9E-22 145.7 12.2 116 102-228 49-175 (183)
62 PF02775 TPP_enzyme_C: Thiamin 99.7 1.5E-17 3.3E-22 142.4 10.6 114 101-224 26-153 (153)
63 PRK07524 hypothetical protein; 99.7 2.4E-17 5.2E-22 168.1 12.7 118 102-231 406-533 (535)
64 cd02009 TPP_SHCHC_synthase Thi 99.7 2.2E-17 4.7E-22 144.8 10.6 111 103-226 51-174 (175)
65 COG0028 IlvB Thiamine pyrophos 99.7 5.5E-17 1.2E-21 165.1 13.3 116 102-229 407-533 (550)
66 TIGR01504 glyox_carbo_lig glyo 99.7 3.4E-17 7.3E-22 168.7 10.7 119 102-228 417-556 (588)
67 PRK07586 hypothetical protein; 99.7 1E-16 2.2E-21 162.7 13.7 113 102-226 384-514 (514)
68 PRK12474 hypothetical protein; 99.7 6.1E-17 1.3E-21 164.5 11.7 113 102-226 388-518 (518)
69 PRK06725 acetolactate synthase 99.7 1.4E-16 3.1E-21 163.5 13.8 152 65-228 373-546 (570)
70 cd03375 TPP_OGFOR Thiamine pyr 99.7 1.6E-16 3.4E-21 141.5 12.1 114 102-227 50-184 (193)
71 PRK08327 acetolactate synthase 99.7 1.6E-16 3.5E-21 163.1 13.8 156 65-226 385-566 (569)
72 PRK06154 hypothetical protein; 99.7 1.5E-16 3.2E-21 163.3 12.9 118 102-228 430-556 (565)
73 PRK07092 benzoylformate decarb 99.7 4E-16 8.6E-21 159.0 15.6 113 102-226 406-529 (530)
74 PLN02225 1-deoxy-D-xylulose-5- 99.7 7.5E-16 1.6E-20 158.5 17.0 194 25-230 117-367 (701)
75 PRK11269 glyoxylate carboligas 99.7 1.3E-16 2.8E-21 164.6 10.9 119 102-228 418-557 (591)
76 PRK09107 acetolactate synthase 99.7 2.4E-16 5.2E-21 162.6 12.8 115 102-228 429-555 (595)
77 cd03376 TPP_PFOR_porB_like Thi 99.7 3.8E-16 8.2E-21 143.1 12.4 123 98-230 57-203 (235)
78 PRK08266 hypothetical protein; 99.7 2.2E-16 4.8E-21 161.2 12.1 118 102-231 401-529 (542)
79 PRK06546 pyruvate dehydrogenas 99.7 3.5E-16 7.6E-21 160.9 13.6 116 102-229 407-532 (578)
80 PRK08199 thiamine pyrophosphat 99.7 5.3E-16 1.1E-20 159.0 14.6 116 101-228 413-539 (557)
81 PRK05858 hypothetical protein; 99.7 2.6E-16 5.6E-21 160.8 11.7 115 102-228 406-531 (542)
82 PRK07418 acetolactate synthase 99.7 2.8E-16 6.1E-21 162.8 11.7 115 102-228 433-560 (616)
83 TIGR02418 acolac_catab acetola 99.7 3.9E-16 8.4E-21 159.4 12.2 115 102-228 407-531 (539)
84 TIGR03297 Ppyr-DeCO2ase phosph 99.7 1.4E-15 3E-20 147.3 15.3 120 99-230 217-339 (361)
85 PRK07979 acetolactate synthase 99.7 5.4E-16 1.2E-20 159.5 13.2 118 102-228 420-549 (574)
86 PRK09124 pyruvate dehydrogenas 99.7 6.3E-16 1.4E-20 159.0 13.4 116 101-228 406-531 (574)
87 PRK07064 hypothetical protein; 99.7 4.5E-16 9.8E-21 159.0 12.2 115 101-227 403-528 (544)
88 TIGR03457 sulphoacet_xsc sulfo 99.7 1.3E-15 2.9E-20 156.7 15.2 155 65-228 381-558 (579)
89 PRK06112 acetolactate synthase 99.7 8.7E-16 1.9E-20 158.0 13.4 115 102-228 436-561 (578)
90 PRK07710 acetolactate synthase 99.6 1.2E-15 2.6E-20 156.8 14.1 115 102-228 423-549 (571)
91 PRK06965 acetolactate synthase 99.6 9.4E-16 2E-20 158.0 13.2 116 102-228 436-563 (587)
92 PRK08979 acetolactate synthase 99.6 9.6E-16 2.1E-20 157.5 13.2 116 102-228 420-547 (572)
93 PLN02573 pyruvate decarboxylas 99.6 7E-16 1.5E-20 158.6 12.2 116 102-227 427-552 (578)
94 PRK06882 acetolactate synthase 99.6 1.1E-15 2.3E-20 157.3 13.2 116 102-228 420-547 (574)
95 PRK06466 acetolactate synthase 99.6 1.3E-15 2.7E-20 156.7 13.5 116 102-228 422-549 (574)
96 PRK08611 pyruvate oxidase; Pro 99.6 1.1E-15 2.4E-20 157.1 12.9 115 102-228 407-531 (576)
97 PRK06457 pyruvate dehydrogenas 99.6 1.2E-15 2.6E-20 156.1 13.0 115 102-228 395-520 (549)
98 PRK08617 acetolactate synthase 99.6 8E-16 1.7E-20 157.5 11.5 115 102-228 413-537 (552)
99 TIGR03254 oxalate_oxc oxalyl-C 99.6 1.7E-15 3.7E-20 155.1 13.5 114 102-228 416-539 (554)
100 TIGR03393 indolpyr_decarb indo 99.6 7.7E-16 1.7E-20 157.2 10.9 114 102-227 403-527 (539)
101 CHL00099 ilvB acetohydroxyacid 99.6 1.9E-15 4.2E-20 155.7 13.6 115 102-228 429-556 (585)
102 TIGR02720 pyruv_oxi_spxB pyruv 99.6 1.8E-15 3.8E-20 155.7 13.1 117 102-228 407-533 (575)
103 PRK08322 acetolactate synthase 99.6 1.8E-15 3.9E-20 154.7 12.8 115 102-228 405-529 (547)
104 PRK08527 acetolactate synthase 99.6 2.4E-15 5.2E-20 154.3 13.7 116 102-229 413-540 (563)
105 cd02018 TPP_PFOR Thiamine pyro 99.6 1.1E-15 2.3E-20 140.3 9.9 120 101-227 62-203 (237)
106 PRK08273 thiamine pyrophosphat 99.6 2.1E-15 4.6E-20 155.7 13.3 116 102-228 414-547 (597)
107 PRK06048 acetolactate synthase 99.6 3E-15 6.4E-20 153.6 14.1 115 102-228 413-539 (561)
108 PRK08155 acetolactate synthase 99.6 2.4E-15 5.1E-20 154.4 13.3 115 102-228 418-544 (564)
109 PRK07525 sulfoacetaldehyde ace 99.6 1.9E-15 4E-20 155.9 12.3 120 102-230 434-565 (588)
110 PLN02470 acetolactate synthase 99.6 3.3E-15 7.1E-20 154.0 14.0 115 102-228 425-558 (585)
111 PRK06456 acetolactate synthase 99.6 2.8E-15 6.1E-20 154.1 13.2 115 102-228 420-546 (572)
112 PRK09628 oorB 2-oxoglutarate-a 99.6 2.3E-15 5.1E-20 140.6 11.3 114 103-227 68-201 (277)
113 PRK08978 acetolactate synthase 99.6 3.2E-15 6.9E-20 152.9 13.2 115 102-228 400-526 (548)
114 TIGR00118 acolac_lg acetolacta 99.6 2.9E-15 6.3E-20 153.5 12.1 115 102-228 411-537 (558)
115 PRK05778 2-oxoglutarate ferred 99.6 6.9E-15 1.5E-19 138.9 13.5 136 103-251 70-224 (301)
116 PRK09259 putative oxalyl-CoA d 99.6 5E-15 1.1E-19 152.1 13.5 114 102-228 423-547 (569)
117 TIGR03394 indol_phenyl_DC indo 99.6 3.3E-15 7.1E-20 152.4 11.5 113 102-226 402-520 (535)
118 PRK07282 acetolactate synthase 99.6 4.3E-15 9.4E-20 152.5 11.3 114 102-228 417-542 (566)
119 PRK06276 acetolactate synthase 99.6 9.2E-15 2E-19 150.7 12.8 115 102-228 418-544 (586)
120 PRK07789 acetolactate synthase 99.6 4.6E-15 1E-19 153.7 10.3 116 102-228 446-577 (612)
121 PRK11869 2-oxoacid ferredoxin 99.6 2E-14 4.4E-19 134.3 11.6 116 103-227 60-193 (280)
122 TIGR02177 PorB_KorB 2-oxoacid: 99.6 8.3E-14 1.8E-18 130.6 15.7 113 103-226 53-185 (287)
123 PRK07449 2-succinyl-5-enolpyru 99.5 1.4E-14 3E-19 148.9 9.5 112 102-226 424-548 (568)
124 PRK11866 2-oxoacid ferredoxin 99.5 9.1E-14 2E-18 129.9 12.6 115 102-226 58-191 (279)
125 PRK11867 2-oxoglutarate ferred 99.5 8.8E-14 1.9E-18 130.7 12.2 115 102-226 68-201 (286)
126 COG2609 AceE Pyruvate dehydrog 99.5 1.6E-12 3.4E-17 130.7 18.0 218 47-277 134-435 (887)
127 TIGR03336 IOR_alpha indolepyru 99.5 6.9E-13 1.5E-17 137.0 13.7 120 98-226 398-529 (595)
128 COG3961 Pyruvate decarboxylase 99.4 1.5E-12 3.2E-17 127.8 9.4 118 102-228 410-536 (557)
129 PLN02980 2-oxoglutarate decarb 99.4 1.5E-12 3.4E-17 147.3 10.3 115 101-228 757-890 (1655)
130 PRK11865 pyruvate ferredoxin o 99.3 6.9E-11 1.5E-15 111.3 18.3 128 97-230 63-214 (299)
131 KOG1185 Thiamine pyrophosphate 99.3 1.3E-11 2.7E-16 120.1 12.6 118 100-228 427-561 (571)
132 KOG4166 Thiamine pyrophosphate 99.3 4.3E-12 9.3E-17 121.5 7.5 153 65-229 472-649 (675)
133 PF09364 XFP_N: XFP N-terminal 99.3 1.2E-11 2.7E-16 117.0 8.4 199 25-231 48-285 (379)
134 COG3960 Glyoxylate carboligase 99.2 1E-10 2.2E-15 109.4 8.5 127 101-235 417-564 (592)
135 KOG1184 Thiamine pyrophosphate 99.1 7.6E-10 1.6E-14 108.6 11.7 119 100-226 412-538 (561)
136 COG3962 Acetolactate synthase 99.1 1.3E-09 2.9E-14 105.7 12.2 117 100-228 441-576 (617)
137 COG3957 Phosphoketolase [Carbo 98.7 9.1E-08 2E-12 97.2 9.8 172 24-206 60-257 (793)
138 COG1013 PorB Pyruvate:ferredox 98.6 9.3E-07 2E-11 83.5 13.5 150 102-265 69-239 (294)
139 COG1165 MenD 2-succinyl-6-hydr 98.1 1.2E-05 2.6E-10 80.5 8.4 108 108-228 427-547 (566)
140 COG4231 Indolepyruvate ferredo 98.1 1.8E-05 3.9E-10 80.3 9.6 113 102-225 427-552 (640)
141 cd03377 TPP_PFOR_PNO Thiamine 97.6 0.0005 1.1E-08 66.5 10.8 97 126-228 152-268 (365)
142 PRK13030 2-oxoacid ferredoxin 97.2 0.0016 3.4E-08 71.8 10.2 117 102-224 467-600 (1159)
143 cd06586 TPP_enzyme_PYR Pyrimid 97.2 0.0064 1.4E-07 51.2 11.7 106 107-224 46-152 (154)
144 cd07035 TPP_PYR_POX_like Pyrim 97.1 0.0081 1.8E-07 51.0 11.4 108 106-224 44-153 (155)
145 PRK09193 indolepyruvate ferred 97.0 0.0031 6.6E-08 69.5 10.0 117 102-224 480-614 (1165)
146 cd07039 TPP_PYR_POX Pyrimidine 97.0 0.013 2.7E-07 50.8 11.7 106 109-224 51-156 (164)
147 TIGR02176 pyruv_ox_red pyruvat 97.0 0.0081 1.8E-07 66.9 12.7 97 126-228 952-1068(1165)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 96.9 0.009 2E-07 51.0 10.3 108 106-224 51-158 (160)
149 TIGR03845 sulfopyru_alph sulfo 96.9 0.022 4.7E-07 49.0 12.3 107 106-225 44-153 (157)
150 cd07038 TPP_PYR_PDC_IPDC_like 96.8 0.019 4.2E-07 49.5 11.0 110 106-224 45-160 (162)
151 PF02776 TPP_enzyme_N: Thiamin 96.7 0.013 2.9E-07 50.8 9.6 111 106-225 49-160 (172)
152 PRK13029 2-oxoacid ferredoxin 96.6 0.011 2.3E-07 65.3 10.0 117 102-224 494-628 (1186)
153 cd07037 TPP_PYR_MenD Pyrimidin 95.8 0.071 1.5E-06 46.1 9.0 107 108-224 47-160 (162)
154 PRK07119 2-ketoisovalerate fer 95.5 0.12 2.6E-06 50.3 10.5 115 107-235 59-178 (352)
155 PRK08659 2-oxoglutarate ferred 95.4 0.15 3.2E-06 50.2 10.9 116 107-235 59-178 (376)
156 TIGR03297 Ppyr-DeCO2ase phosph 95.4 0.08 1.7E-06 51.7 8.9 115 104-225 34-151 (361)
157 PRK08611 pyruvate oxidase; Pro 95.2 0.2 4.3E-06 52.0 11.6 108 109-226 56-163 (576)
158 COG0028 IlvB Thiamine pyrophos 95.0 0.2 4.3E-06 51.7 10.9 110 106-225 49-159 (550)
159 PF01855 POR_N: Pyruvate flavo 95.0 0.1 2.2E-06 47.7 7.9 112 109-234 49-161 (230)
160 TIGR03254 oxalate_oxc oxalyl-C 95.0 0.22 4.8E-06 51.3 11.1 110 109-226 53-163 (554)
161 PRK08366 vorA 2-ketoisovalerat 94.9 0.29 6.2E-06 48.4 11.2 114 108-235 61-174 (390)
162 PRK07524 hypothetical protein; 94.8 0.32 6.8E-06 49.9 11.7 112 106-225 49-162 (535)
163 PRK07525 sulfoacetaldehyde ace 94.5 0.36 7.7E-06 50.2 11.5 108 109-226 56-163 (588)
164 PRK06457 pyruvate dehydrogenas 94.5 0.38 8.2E-06 49.6 11.6 108 109-226 52-159 (549)
165 PRK09259 putative oxalyl-CoA d 94.5 0.36 7.9E-06 49.9 11.4 109 109-225 60-169 (569)
166 PRK07064 hypothetical protein; 94.4 0.4 8.7E-06 49.2 11.5 110 109-226 54-165 (544)
167 cd07033 TPP_PYR_DXS_TK_like Py 94.3 0.45 9.8E-06 40.6 9.9 101 107-224 50-154 (156)
168 PRK07979 acetolactate synthase 94.3 0.36 7.7E-06 50.0 10.9 108 109-226 55-163 (574)
169 PRK11269 glyoxylate carboligas 94.3 0.42 9.2E-06 49.7 11.4 109 109-226 55-164 (591)
170 TIGR01504 glyox_carbo_lig glyo 94.3 0.55 1.2E-05 48.9 12.2 109 109-226 54-163 (588)
171 TIGR03457 sulphoacet_xsc sulfo 94.3 0.38 8.3E-06 49.9 11.0 107 109-225 52-158 (579)
172 PRK07418 acetolactate synthase 94.2 0.4 8.6E-06 50.2 11.1 109 107-225 71-180 (616)
173 PRK06456 acetolactate synthase 94.2 0.41 8.8E-06 49.6 11.1 108 109-226 56-164 (572)
174 PRK08266 hypothetical protein; 94.1 0.47 1E-05 48.7 11.2 110 109-226 56-167 (542)
175 PRK06725 acetolactate synthase 94.1 0.42 9.1E-06 49.5 10.8 108 109-226 65-173 (570)
176 PRK06112 acetolactate synthase 94.0 0.48 1E-05 49.1 11.2 108 109-226 62-170 (578)
177 PRK06466 acetolactate synthase 93.9 0.46 1E-05 49.2 10.8 108 109-226 55-163 (574)
178 PRK07789 acetolactate synthase 93.9 0.49 1.1E-05 49.4 11.1 110 107-226 80-190 (612)
179 PRK08978 acetolactate synthase 93.9 0.46 1E-05 48.8 10.6 109 108-226 50-159 (548)
180 PRK07586 hypothetical protein; 93.8 0.48 1E-05 48.3 10.6 109 108-226 51-160 (514)
181 PRK08322 acetolactate synthase 93.7 0.56 1.2E-05 48.2 10.9 108 109-226 51-159 (547)
182 PRK07710 acetolactate synthase 93.7 0.55 1.2E-05 48.6 10.9 111 106-226 63-174 (571)
183 PLN02470 acetolactate synthase 93.7 0.52 1.1E-05 49.0 10.7 109 108-226 63-172 (585)
184 TIGR00118 acolac_lg acetolacta 93.7 0.59 1.3E-05 48.2 11.0 108 109-226 52-160 (558)
185 TIGR03394 indol_phenyl_DC indo 93.6 0.5 1.1E-05 48.6 10.2 109 110-226 52-164 (535)
186 PRK08155 acetolactate synthase 93.5 0.63 1.4E-05 48.1 10.9 107 109-225 64-171 (564)
187 PRK12474 hypothetical protein; 93.5 0.67 1.5E-05 47.4 11.0 108 109-226 56-164 (518)
188 PRK08273 thiamine pyrophosphat 93.5 0.57 1.2E-05 48.8 10.6 108 109-226 55-163 (597)
189 PRK09107 acetolactate synthase 93.4 0.59 1.3E-05 48.7 10.5 110 107-226 60-170 (595)
190 PRK08199 thiamine pyrophosphat 93.4 0.72 1.6E-05 47.6 11.1 107 109-225 59-166 (557)
191 PRK09622 porA pyruvate flavodo 93.3 0.71 1.5E-05 45.9 10.5 112 108-233 68-181 (407)
192 PRK08979 acetolactate synthase 93.3 0.68 1.5E-05 48.0 10.8 108 109-226 55-163 (572)
193 PRK06276 acetolactate synthase 93.3 0.76 1.7E-05 47.7 11.1 109 108-226 50-159 (586)
194 PRK06882 acetolactate synthase 93.1 0.81 1.8E-05 47.4 11.0 108 109-226 55-163 (574)
195 PRK08367 porA pyruvate ferredo 93.1 0.96 2.1E-05 44.8 10.9 114 107-234 61-176 (394)
196 TIGR03710 OAFO_sf 2-oxoacid:ac 93.0 0.6 1.3E-05 48.4 9.7 114 108-234 249-366 (562)
197 PRK09627 oorA 2-oxoglutarate-a 92.9 0.74 1.6E-05 45.2 9.8 114 108-235 59-177 (375)
198 PRK07282 acetolactate synthase 92.8 0.86 1.9E-05 47.2 10.6 109 108-226 60-169 (566)
199 PRK05858 hypothetical protein; 92.8 0.97 2.1E-05 46.5 10.9 108 109-226 55-163 (542)
200 TIGR02418 acolac_catab acetola 92.7 1.1 2.4E-05 46.0 11.1 107 110-226 50-157 (539)
201 TIGR02720 pyruv_oxi_spxB pyruv 92.6 1.1 2.4E-05 46.4 11.2 108 109-226 51-158 (575)
202 PRK06965 acetolactate synthase 92.6 1.1 2.5E-05 46.5 11.3 108 109-226 72-180 (587)
203 PRK08327 acetolactate synthase 92.6 0.65 1.4E-05 48.1 9.4 109 109-225 63-179 (569)
204 PF02779 Transket_pyr: Transke 92.5 1.9 4.2E-05 37.5 11.0 108 107-224 59-170 (178)
205 PRK08617 acetolactate synthase 92.4 0.96 2.1E-05 46.6 10.3 108 109-226 55-163 (552)
206 PRK08527 acetolactate synthase 92.3 1.1 2.3E-05 46.4 10.5 108 109-226 54-162 (563)
207 PRK06048 acetolactate synthase 92.3 1.3 2.8E-05 45.8 11.1 108 108-225 57-165 (561)
208 CHL00099 ilvB acetohydroxyacid 92.2 1.1 2.5E-05 46.4 10.7 108 109-226 64-172 (585)
209 TIGR03336 IOR_alpha indolepyru 92.2 1.1 2.3E-05 46.8 10.4 110 109-235 59-170 (595)
210 PRK09124 pyruvate dehydrogenas 92.1 1.4 3E-05 45.7 11.1 105 109-225 54-160 (574)
211 cd01460 vWA_midasin VWA_Midasi 92.1 2.3 4.9E-05 39.8 11.5 83 127-211 166-257 (266)
212 PLN02573 pyruvate decarboxylas 92.1 1.2 2.5E-05 46.4 10.5 109 109-226 67-181 (578)
213 PRK06154 hypothetical protein; 91.8 1.5 3.2E-05 45.5 10.9 91 127-226 84-175 (565)
214 cd07036 TPP_PYR_E1-PDHc-beta_l 91.7 1.5 3.3E-05 38.0 9.3 100 107-223 55-164 (167)
215 TIGR00204 dxs 1-deoxy-D-xylulo 91.7 1.2 2.6E-05 46.7 10.2 104 107-224 363-467 (617)
216 PRK11892 pyruvate dehydrogenas 91.2 1.6 3.4E-05 44.2 10.1 101 106-223 199-309 (464)
217 PRK07092 benzoylformate decarb 91.1 1.7 3.8E-05 44.5 10.6 109 109-226 61-170 (530)
218 TIGR00173 menD 2-succinyl-5-en 90.7 0.98 2.1E-05 45.1 8.1 108 109-226 51-165 (432)
219 PRK06546 pyruvate dehydrogenas 90.5 2.5 5.4E-05 43.9 11.1 108 109-226 54-161 (578)
220 TIGR00232 tktlase_bact transke 90.3 1.9 4.2E-05 45.5 10.1 101 109-224 409-512 (653)
221 PRK05444 1-deoxy-D-xylulose-5- 89.4 2.4 5.1E-05 44.1 9.9 101 109-224 334-436 (580)
222 PTZ00089 transketolase; Provis 89.3 2.4 5.2E-05 44.8 10.0 101 109-224 416-519 (661)
223 PRK12571 1-deoxy-D-xylulose-5- 89.1 2.5 5.5E-05 44.5 9.9 103 108-225 373-477 (641)
224 PRK12315 1-deoxy-D-xylulose-5- 88.9 2.3 5E-05 44.3 9.4 103 108-224 332-434 (581)
225 PLN02234 1-deoxy-D-xylulose-5- 88.3 3 6.4E-05 43.9 9.7 100 109-222 412-512 (641)
226 PLN02225 1-deoxy-D-xylulose-5- 88.2 3.4 7.4E-05 43.8 10.0 104 107-224 434-538 (701)
227 KOG4166 Thiamine pyrophosphate 88.0 4.4 9.6E-05 40.2 9.9 103 111-224 144-248 (675)
228 COG0674 PorA Pyruvate:ferredox 87.9 5 0.00011 39.3 10.5 111 107-229 58-168 (365)
229 PLN02582 1-deoxy-D-xylulose-5- 87.8 3.7 8E-05 43.5 10.0 104 107-224 409-513 (677)
230 PRK05899 transketolase; Review 87.2 4.8 0.0001 42.3 10.6 102 109-224 380-483 (624)
231 PLN02683 pyruvate dehydrogenas 86.6 6.4 0.00014 38.4 10.4 100 106-223 84-194 (356)
232 PLN02790 transketolase 86.6 4.4 9.5E-05 42.9 9.8 103 108-224 404-509 (654)
233 PLN02980 2-oxoglutarate decarb 85.2 3.1 6.8E-05 48.6 8.6 107 109-225 352-465 (1655)
234 PRK09212 pyruvate dehydrogenas 85.0 6.7 0.00014 37.8 9.5 103 106-225 61-173 (327)
235 COG0021 TktA Transketolase [Ca 84.4 4 8.7E-05 42.4 8.0 78 141-225 440-519 (663)
236 COG4032 Predicted thiamine-pyr 84.2 5.2 0.00011 33.8 7.1 107 107-224 53-161 (172)
237 PRK12753 transketolase; Review 84.1 7.2 0.00016 41.3 10.1 102 109-225 415-519 (663)
238 PTZ00182 3-methyl-2-oxobutanat 82.7 9.4 0.0002 37.2 9.6 100 107-223 93-202 (355)
239 TIGR03393 indolpyr_decarb indo 82.1 9.8 0.00021 39.1 10.0 110 106-226 49-165 (539)
240 PRK12754 transketolase; Review 81.4 10 0.00022 40.2 9.9 104 109-224 415-518 (663)
241 CHL00144 odpB pyruvate dehydro 79.8 16 0.00034 35.2 9.9 101 106-223 61-171 (327)
242 smart00861 Transket_pyr Transk 78.4 23 0.0005 30.2 9.7 101 109-224 62-164 (168)
243 PF09851 SHOCT: Short C-termin 76.4 5.3 0.00011 24.5 3.6 28 255-283 3-30 (31)
244 COG3958 Transketolase, C-termi 74.3 18 0.00038 34.3 8.1 112 99-224 51-165 (312)
245 PRK11032 hypothetical protein; 73.9 11 0.00023 32.6 6.2 81 257-338 30-118 (160)
246 PF13519 VWA_2: von Willebrand 72.2 17 0.00036 30.1 7.1 73 125-208 99-171 (172)
247 COG1154 Dxs Deoxyxylulose-5-ph 71.7 26 0.00057 36.4 9.3 90 124-223 381-472 (627)
248 PF04273 DUF442: Putative phos 71.7 12 0.00026 30.1 5.7 47 177-226 46-95 (110)
249 COG1240 ChlD Mg-chelatase subu 70.2 41 0.0009 31.3 9.5 97 104-207 155-257 (261)
250 COG1107 Archaea-specific RecJ- 66.8 8.5 0.00018 39.7 4.6 54 141-203 403-458 (715)
251 PRK13683 hypothetical protein; 64.7 9.3 0.0002 29.2 3.4 40 186-229 12-51 (87)
252 cd01453 vWA_transcription_fact 64.5 70 0.0015 27.8 9.6 71 125-209 107-178 (183)
253 TIGR02176 pyruv_ox_red pyruvat 63.9 55 0.0012 37.2 10.7 112 109-233 64-175 (1165)
254 PRK13685 hypothetical protein; 63.5 90 0.0019 29.8 11.0 82 126-209 194-286 (326)
255 PF07295 DUF1451: Protein of u 62.3 18 0.00038 30.8 5.1 81 255-338 18-106 (146)
256 PF01380 SIS: SIS domain SIS d 60.7 29 0.00063 27.6 6.1 37 124-162 53-89 (131)
257 PRK07449 2-succinyl-5-enolpyru 59.5 37 0.00081 35.0 8.0 48 109-162 60-107 (568)
258 COG1303 Uncharacterized protei 59.0 26 0.00057 30.1 5.5 45 179-226 22-66 (179)
259 KOG1145 Mitochondrial translat 56.5 55 0.0012 33.9 8.2 102 124-232 225-343 (683)
260 cd05014 SIS_Kpsf KpsF-like pro 52.2 68 0.0015 25.5 7.0 37 124-162 47-83 (128)
261 cd01451 vWA_Magnesium_chelatas 52.0 1.5E+02 0.0033 25.2 10.1 70 126-204 99-174 (178)
262 COG2205 KdpD Osmosensitive K+ 51.7 40 0.00086 36.5 6.6 75 125-200 249-323 (890)
263 PRK10490 sensor protein KdpD; 50.1 55 0.0012 36.0 7.8 93 125-225 251-344 (895)
264 smart00115 CASc Caspase, inter 47.7 78 0.0017 28.9 7.3 70 155-224 9-79 (241)
265 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.5 87 0.0019 24.8 6.7 37 124-162 46-82 (126)
266 PRK13010 purU formyltetrahydro 42.8 99 0.0021 29.3 7.3 54 124-196 93-149 (289)
267 PRK13406 bchD magnesium chelat 42.6 2.2E+02 0.0047 29.9 10.4 94 105-209 472-582 (584)
268 TIGR03590 PseG pseudaminic aci 42.4 1.3E+02 0.0028 27.9 8.1 35 129-163 2-41 (279)
269 COG0532 InfB Translation initi 42.2 95 0.0021 31.8 7.4 123 98-233 59-198 (509)
270 PRK06027 purU formyltetrahydro 41.4 1.5E+02 0.0032 28.0 8.3 53 124-195 89-144 (286)
271 cd00032 CASc Caspase, interleu 41.2 93 0.002 28.3 6.8 69 155-224 10-80 (243)
272 KOG1184 Thiamine pyrophosphate 40.8 83 0.0018 32.3 6.6 96 126-226 68-169 (561)
273 cd01467 vWA_BatA_type VWA BatA 40.7 1.9E+02 0.0041 24.3 8.3 38 125-162 102-141 (180)
274 TIGR03186 AKGDH_not_PDH alpha- 40.7 2.4E+02 0.0052 31.2 10.6 122 97-224 560-688 (889)
275 PF06707 DUF1194: Protein of u 40.5 2.4E+02 0.0052 25.4 9.0 96 107-210 95-198 (205)
276 PF06945 DUF1289: Protein of u 40.3 47 0.001 22.7 3.5 12 241-252 21-32 (51)
277 cd05710 SIS_1 A subgroup of th 39.9 71 0.0015 25.5 5.2 40 123-164 46-85 (120)
278 PRK00945 acetyl-CoA decarbonyl 39.6 2.4E+02 0.0053 24.5 8.7 37 125-161 34-71 (171)
279 PF14399 Transpep_BrtH: NlpC/p 39.4 1.7E+02 0.0037 27.3 8.5 46 180-229 55-100 (317)
280 COG0108 RibB 3,4-dihydroxy-2-b 39.2 1.1E+02 0.0024 27.4 6.5 70 121-195 120-192 (203)
281 PF08312 cwf21: cwf21 domain; 38.9 80 0.0017 21.3 4.4 31 257-288 13-43 (46)
282 PRK06988 putative formyltransf 38.6 1.2E+02 0.0026 28.9 7.3 59 128-195 4-62 (312)
283 PRK05647 purN phosphoribosylgl 38.5 85 0.0018 27.9 5.9 55 126-196 3-59 (200)
284 KOG1201 Hydroxysteroid 17-beta 38.4 3.6E+02 0.0078 25.7 10.3 94 112-223 24-118 (300)
285 cd05009 SIS_GlmS_GlmD_2 SIS (S 38.2 84 0.0018 25.7 5.6 39 124-163 61-99 (153)
286 PF02979 NHase_alpha: Nitrile 37.5 74 0.0016 28.1 5.1 28 258-285 10-37 (188)
287 cd08325 CARD_CASP1-like Caspas 36.7 62 0.0014 24.5 4.1 37 254-290 15-51 (83)
288 PRK05772 translation initiatio 36.3 1.9E+02 0.0042 28.4 8.3 113 102-231 176-294 (363)
289 cd08323 CARD_APAF1 Caspase act 35.8 42 0.00092 25.7 3.0 26 257-282 16-41 (86)
290 TIGR00239 2oxo_dh_E1 2-oxoglut 35.5 3.5E+02 0.0075 30.1 10.8 108 106-223 657-771 (929)
291 PF10925 DUF2680: Protein of u 35.2 1.4E+02 0.0029 21.2 5.3 30 260-289 23-52 (59)
292 COG3960 Glyoxylate carboligase 35.1 1.3E+02 0.0028 29.3 6.6 46 178-225 117-163 (592)
293 PRK00414 gmhA phosphoheptose i 34.9 1.2E+02 0.0025 26.7 6.1 41 122-164 109-149 (192)
294 cd05017 SIS_PGI_PMI_1 The memb 34.6 86 0.0019 24.9 4.9 37 123-161 42-78 (119)
295 TIGR00655 PurU formyltetrahydr 33.9 1.8E+02 0.0038 27.4 7.5 54 124-196 84-140 (280)
296 PF10415 FumaraseC_C: Fumarase 33.6 48 0.001 23.1 2.8 19 260-278 28-46 (55)
297 PRK13938 phosphoheptose isomer 33.5 1.2E+02 0.0025 27.0 5.9 43 120-164 109-151 (196)
298 PRK06381 threonine synthase; V 33.4 3.2E+02 0.007 25.7 9.4 38 148-197 81-118 (319)
299 PRK13936 phosphoheptose isomer 33.3 86 0.0019 27.6 5.1 41 122-164 109-149 (197)
300 TIGR03127 RuMP_HxlB 6-phospho 33.0 1.7E+02 0.0038 24.9 6.9 16 180-195 91-106 (179)
301 PRK10886 DnaA initiator-associ 32.6 85 0.0019 27.9 4.9 39 123-163 108-146 (196)
302 PLN02331 phosphoribosylglycina 32.5 2.1E+02 0.0046 25.6 7.5 53 127-196 2-57 (207)
303 TIGR00441 gmhA phosphoheptose 32.4 86 0.0019 26.4 4.7 39 123-163 78-116 (154)
304 cd08326 CARD_CASP9 Caspase act 32.2 51 0.0011 25.1 2.9 24 258-281 19-42 (84)
305 PRK09404 sucA 2-oxoglutarate d 32.0 4.2E+02 0.009 29.5 10.8 106 107-224 656-770 (924)
306 cd05007 SIS_Etherase N-acetylm 32.0 87 0.0019 29.0 5.1 40 123-164 117-156 (257)
307 PRK00278 trpC indole-3-glycero 31.8 3.3E+02 0.0072 25.1 8.9 96 116-227 74-170 (260)
308 COG3707 AmiR Response regulato 31.6 2.6E+02 0.0057 24.9 7.6 60 140-212 63-123 (194)
309 PLN02522 ATP citrate (pro-S)-l 31.2 2.8E+02 0.0061 29.2 9.0 87 123-215 220-319 (608)
310 PF01738 DLH: Dienelactone hyd 30.8 2.8E+02 0.0061 24.1 8.1 16 222-237 178-193 (218)
311 cd01452 VWA_26S_proteasome_sub 30.7 2.2E+02 0.0047 25.1 7.1 34 127-160 109-143 (187)
312 COG0299 PurN Folate-dependent 30.6 3.3E+02 0.0072 24.4 8.1 80 126-226 2-87 (200)
313 cd01465 vWA_subgroup VWA subgr 30.5 3.1E+02 0.0067 22.6 9.0 67 127-205 98-169 (170)
314 cd01987 USP_OKCHK USP domain i 30.2 2.5E+02 0.0055 21.7 7.0 63 137-199 11-73 (124)
315 cd01561 CBS_like CBS_like: Thi 29.8 4.5E+02 0.0098 24.3 10.1 46 141-198 63-109 (291)
316 PRK07328 histidinol-phosphatas 29.7 1.4E+02 0.0029 27.7 6.0 76 142-221 179-255 (269)
317 PF08776 VASP_tetra: VASP tetr 29.5 1.7E+02 0.0036 19.2 6.0 20 274-293 4-23 (40)
318 KOG0369 Pyruvate carboxylase [ 29.5 1.6E+02 0.0035 31.4 6.7 31 127-159 160-190 (1176)
319 COG0777 AccD Acetyl-CoA carbox 28.9 1E+02 0.0022 29.1 4.8 61 102-163 131-205 (294)
320 COG2515 Acd 1-aminocyclopropan 28.8 3.2E+02 0.0068 26.3 8.1 109 125-251 63-175 (323)
321 PF00926 DHBP_synthase: 3,4-di 28.8 1.2E+02 0.0026 27.0 5.1 67 124-195 119-188 (194)
322 COG0498 ThrC Threonine synthas 28.8 2.1E+02 0.0045 28.6 7.3 69 125-211 127-195 (411)
323 cd08327 CARD_RAIDD Caspase act 28.8 63 0.0014 25.2 3.0 26 256-281 22-47 (94)
324 PRK06731 flhF flagellar biosyn 28.7 4.9E+02 0.011 24.3 11.1 88 125-226 74-162 (270)
325 TIGR00670 asp_carb_tr aspartat 28.6 3.1E+02 0.0067 26.1 8.2 61 124-195 148-208 (301)
326 COG1062 AdhC Zn-dependent alco 28.6 2.9E+02 0.0064 27.0 8.0 59 102-165 163-221 (366)
327 TIGR00506 ribB 3,4-dihydroxy-2 28.2 1.7E+02 0.0038 26.1 6.0 68 122-195 122-193 (199)
328 cd01450 vWFA_subfamily_ECM Von 28.1 2.3E+02 0.0049 22.8 6.6 38 124-161 102-140 (161)
329 PTZ00254 40S ribosomal protein 27.7 1.7E+02 0.0036 27.2 6.0 24 141-164 129-152 (249)
330 TIGR01323 nitrile_alph nitrile 27.5 89 0.0019 27.4 3.9 28 258-285 4-31 (185)
331 cd08330 CARD_ASC_NALP1 Caspase 27.2 74 0.0016 24.0 3.1 27 256-282 16-42 (82)
332 TIGR03142 cytochro_ccmI cytoch 27.2 95 0.0021 25.0 3.9 38 255-293 43-80 (117)
333 PF05014 Nuc_deoxyrib_tr: Nucl 27.1 1.2E+02 0.0025 23.9 4.4 39 126-165 63-101 (113)
334 cd08332 CARD_CASP2 Caspase act 27.1 83 0.0018 24.2 3.4 25 257-281 22-46 (90)
335 TIGR03436 acidobact_VWFA VWFA- 27.0 4E+02 0.0087 24.6 8.8 88 124-214 163-255 (296)
336 TIGR02442 Cob-chelat-sub cobal 26.8 2.4E+02 0.0051 29.8 7.7 62 125-195 564-633 (633)
337 PF09999 DUF2240: Uncharacteri 26.6 3.4E+02 0.0074 22.9 7.2 81 197-287 34-117 (144)
338 TIGR02482 PFKA_ATP 6-phosphofr 26.5 1.3E+02 0.0029 28.6 5.3 36 126-166 93-131 (301)
339 PRK05720 mtnA methylthioribose 26.4 4.5E+02 0.0097 25.6 9.0 109 108-232 163-274 (344)
340 TIGR00075 hypD hydrogenase exp 26.4 6.3E+02 0.014 24.9 11.5 98 123-223 134-251 (369)
341 PF06570 DUF1129: Protein of u 26.1 1.3E+02 0.0028 26.7 5.0 37 254-291 7-43 (206)
342 cd05013 SIS_RpiR RpiR-like pro 25.7 2.5E+02 0.0053 22.0 6.2 18 180-197 79-96 (139)
343 cd08329 CARD_BIRC2_BIRC3 Caspa 25.7 85 0.0018 24.4 3.2 30 255-284 23-52 (94)
344 PRK15482 transcriptional regul 25.6 2.2E+02 0.0047 26.4 6.6 77 105-197 141-218 (285)
345 COG0075 Serine-pyruvate aminot 25.5 2.3E+02 0.0049 28.1 6.8 15 146-160 96-110 (383)
346 PRK01792 ribB 3,4-dihydroxy-2- 25.3 2.5E+02 0.0054 25.5 6.5 68 122-195 132-203 (214)
347 COG4231 Indolepyruvate ferredo 25.0 6.4E+02 0.014 26.7 10.1 166 28-235 14-182 (640)
348 PF02520 DUF148: Domain of unk 24.9 1.3E+02 0.0027 23.9 4.2 34 304-337 69-102 (113)
349 PF06833 MdcE: Malonate decarb 24.6 5.5E+02 0.012 23.6 8.9 44 125-168 28-79 (234)
350 PRK13011 formyltetrahydrofolat 24.6 5.1E+02 0.011 24.4 8.9 51 126-195 91-144 (286)
351 cd01461 vWA_interalpha_trypsin 24.5 4E+02 0.0086 21.8 9.5 69 125-205 99-168 (171)
352 COG0794 GutQ Predicted sugar p 24.3 2.6E+02 0.0056 25.1 6.4 17 180-196 105-121 (202)
353 PF00140 Sigma70_r1_2: Sigma-7 24.2 1.4E+02 0.003 18.8 3.4 34 255-288 2-35 (37)
354 PRK01706 S-adenosylmethionine 24.1 1E+02 0.0022 25.3 3.6 40 187-232 15-54 (123)
355 COG0079 HisC Histidinol-phosph 24.1 6.7E+02 0.014 24.3 10.9 141 143-295 135-281 (356)
356 PF02423 OCD_Mu_crystall: Orni 24.0 2.2E+02 0.0047 27.1 6.3 71 115-200 116-187 (313)
357 PLN03013 cysteine synthase 23.9 3.1E+02 0.0067 27.6 7.5 38 148-197 193-230 (429)
358 PRK11557 putative DNA-binding 23.7 2.4E+02 0.0051 25.9 6.5 77 105-197 134-211 (278)
359 TIGR00512 salvage_mtnA S-methy 23.4 5.2E+02 0.011 25.0 8.8 106 110-232 165-274 (331)
360 PF06057 VirJ: Bacterial virul 23.4 1.4E+02 0.003 26.6 4.5 34 125-159 2-35 (192)
361 PRK07668 hypothetical protein; 23.3 2.4E+02 0.0052 26.2 6.2 38 254-292 7-44 (254)
362 cd08785 CARD_CARD9-like Caspas 23.1 87 0.0019 24.0 2.8 26 258-283 19-44 (86)
363 TIGR00315 cdhB CO dehydrogenas 22.9 1.4E+02 0.0029 25.8 4.2 38 125-162 27-64 (162)
364 PF05209 MinC_N: Septum format 22.8 1.8E+02 0.0039 22.5 4.6 44 183-226 9-54 (99)
365 cd00640 Trp-synth-beta_II Tryp 22.7 5.5E+02 0.012 22.9 11.0 38 148-197 68-105 (244)
366 cd00198 vWFA Von Willebrand fa 22.4 3.3E+02 0.0071 21.4 6.5 37 124-160 100-138 (161)
367 PF04695 Pex14_N: Peroxisomal 22.3 1.4E+02 0.0031 24.7 4.2 32 254-286 20-51 (136)
368 PLN02618 tryptophan synthase, 22.1 4.6E+02 0.0099 26.2 8.4 71 111-195 106-176 (410)
369 PF06506 PrpR_N: Propionate ca 22.1 2E+02 0.0044 24.7 5.3 84 126-214 77-168 (176)
370 cd05005 SIS_PHI Hexulose-6-pho 21.9 3.2E+02 0.0069 23.2 6.5 17 180-196 94-110 (179)
371 TIGR01415 trpB_rel pyridoxal-p 21.8 8E+02 0.017 24.4 10.1 44 145-197 132-176 (419)
372 PRK05441 murQ N-acetylmuramic 21.8 1.6E+02 0.0035 27.9 4.9 39 123-163 130-168 (299)
373 PRK15062 hydrogenase isoenzyme 21.5 7.8E+02 0.017 24.2 11.4 99 123-224 128-246 (364)
374 PRK11337 DNA-binding transcrip 21.4 2.3E+02 0.005 26.2 5.9 79 104-198 145-224 (292)
375 cd01671 CARD Caspase activatio 21.3 1.3E+02 0.0028 21.9 3.4 28 255-282 13-40 (80)
376 COG0848 ExbD Biopolymer transp 21.3 3.6E+02 0.0078 22.4 6.4 45 114-158 85-129 (137)
377 COG0078 ArgF Ornithine carbamo 20.8 3.2E+02 0.007 26.1 6.6 33 125-160 152-184 (310)
378 PF00009 GTP_EFTU: Elongation 20.6 2.4E+02 0.0052 24.1 5.5 38 122-160 92-129 (188)
379 TIGR00460 fmt methionyl-tRNA f 20.6 4.6E+02 0.0099 24.9 7.8 64 129-198 3-66 (313)
380 PRK03124 S-adenosylmethionine 20.5 1.3E+02 0.0029 24.8 3.6 41 186-232 12-52 (127)
381 PRK08558 adenine phosphoribosy 20.5 6.6E+02 0.014 22.9 9.9 121 97-225 82-210 (238)
382 PF02421 FeoB_N: Ferrous iron 20.4 2.7E+02 0.0058 23.8 5.5 74 125-204 78-154 (156)
383 PF04748 Polysacc_deac_2: Dive 20.4 3.4E+02 0.0073 24.3 6.5 46 180-226 133-183 (213)
384 PF02211 NHase_beta: Nitrile h 20.3 1.5E+02 0.0032 27.0 4.1 26 247-278 69-94 (222)
385 TIGR02803 ExbD_1 TonB system t 20.3 4.3E+02 0.0094 21.1 6.6 49 113-161 72-120 (122)
386 PRK01236 S-adenosylmethionine 20.2 97 0.0021 25.8 2.7 41 186-232 13-53 (131)
387 PRK11543 gutQ D-arabinose 5-ph 20.2 3.3E+02 0.0072 25.5 6.8 40 123-164 88-127 (321)
388 PRK06740 histidinol-phosphatas 20.1 4.8E+02 0.01 25.1 7.9 45 173-217 269-314 (331)
389 TIGR03330 SAM_DCase_Bsu S-aden 20.1 1.3E+02 0.0027 24.2 3.3 40 187-232 12-51 (112)
390 cd02991 UAS_ETEA UAS family, E 20.1 1.4E+02 0.0031 23.9 3.6 34 126-161 51-84 (116)
391 COG0205 PfkA 6-phosphofructoki 20.1 2.2E+02 0.0047 27.8 5.4 36 126-166 96-133 (347)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-88 Score=642.60 Aligned_cols=323 Identities=40% Similarity=0.683 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCcc-ccccCCchHHHHHHHHHccCCC-cEEEccCccHHHHHHcCCCHHHHHHHhhcCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNK 78 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~~-~~~~~~G~Ea~~~~~~~al~~~-D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~ 78 (340)
+|++|+++|.||+++..++|+|+++ |+|++.||||+++|++.+|++. ||++|+||+|+++|++|+++.++|++++|+.
T Consensus 32 ~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~ 111 (358)
T COG1071 32 LYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKA 111 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHHHHHHHhccc
Confidence 5999999999999999999999996 9999999999999999999965 9999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCC-eEEEEECCcccCcchHHHHHHHHHhCCCCEE
Q 019498 79 ADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVI 157 (340)
Q Consensus 79 ~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~-~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi 157 (340)
+|+|+|+++++|++++..++++.++++|.|+|.|+|+|+|.|+++.+. +++|++|||+++||.|||+||+|+.|+||||
T Consensus 112 ~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvv 191 (358)
T COG1071 112 TGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVV 191 (358)
T ss_pred cCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEE
Confidence 999999999999998889999999999999999999999999999555 9999999999999999999999999999999
Q ss_pred EEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCC
Q 019498 158 FICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 237 (340)
Q Consensus 158 ~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd 237 (340)
|||+||+|+||++...+...+.++.++.+||+|+++|||+|+.+|++++++|++++|+++||+|||+.|||++|||++||
T Consensus 192 f~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd 271 (358)
T COG1071 192 FVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDD 271 (358)
T ss_pred EEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCC
Confidence 99999999999888777766667779999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCccHH
Q 019498 238 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLR 317 (340)
Q Consensus 238 ~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 317 (340)
|..||+++|++.|+ ++|||.+++++|++.|++|++++++++++++++|++++++|+++|.|+++++|+|||++.|+.+.
T Consensus 272 ~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~ 350 (358)
T COG1071 272 PSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLE 350 (358)
T ss_pred ccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccCChhHH
Confidence 99999999999998 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 019498 318 EQEHSLR 324 (340)
Q Consensus 318 ~~~~~l~ 324 (340)
+|++.+.
T Consensus 351 ~q~~~~~ 357 (358)
T COG1071 351 EQREELE 357 (358)
T ss_pred HHHHhhc
Confidence 9987654
No 2
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=3.8e-79 Score=587.98 Aligned_cols=309 Identities=29% Similarity=0.484 Sum_probs=298.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCc-cccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+||+|+++|.||+++..++++|++ +|+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|++++|+.+
T Consensus 35 ~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~ 114 (362)
T PLN02269 35 FFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKD 114 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 599999999999999999999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
|.|+|+++++|+.+++.++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||+|+.|+||+|||
T Consensus 115 g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfv 194 (362)
T PLN02269 115 GCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFV 194 (362)
T ss_pred CCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEE
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|+||+|+++++...+...++++.++ +++|+++|||+|+.+|+++++.|++++|+ ++|+|||++|||++|||++|++.
T Consensus 195 veNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~ 271 (362)
T PLN02269 195 CENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGS 271 (362)
T ss_pred EeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCc
Confidence 9999999999888777777787655 68999999999999999999999999999 99999999999999999999878
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCC
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVS 312 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~ 312 (340)
.||+++|++.|++++|||.+|+++|+++|+||++++++++++++++|++++++|+++|.|+++++|+|||+..
T Consensus 272 ~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 272 TYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVKG 344 (362)
T ss_pred ccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCC
Confidence 9999999999975699999999999999999999999999999999999999999999999999999999964
No 3
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2.4e-78 Score=580.39 Aligned_cols=309 Identities=28% Similarity=0.459 Sum_probs=298.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCc-cccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+|++|+++|.||+++.++++||++ +|+|++.||||+++|++.+|+++|+++++||+|+++|++|+++.++|++++|+.+
T Consensus 25 ~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~ 104 (341)
T CHL00149 25 LYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKET 104 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCC
Confidence 599999999999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcC-------CCCeEEEEECCcccCcchHHHHHHHHHhC
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGDFHAALNFSAVT 152 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~~G~~~Eal~~A~~~ 152 (340)
|+|+|+++++|+.+++.++++.+|+||+++|+|+|+|+|.|+++ ++++|+|++|||++++|.+||+||+|++|
T Consensus 105 g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~ 184 (341)
T CHL00149 105 GCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLW 184 (341)
T ss_pred CCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhc
Confidence 99999999999998888899889999999999999999999886 68999999999999999999999999999
Q ss_pred CCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 153 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 153 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.+++++++.|++++|++++|+|||+.|||++||
T Consensus 185 ~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gH 264 (341)
T CHL00149 185 KLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGH 264 (341)
T ss_pred CCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCc
Confidence 99999999999999998877776678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccC
Q 019498 233 TTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV 311 (340)
Q Consensus 233 s~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~ 311 (340)
|++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|+++|.|+++++|+|||+.
T Consensus 265 s~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 265 SLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred CCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 99975 5799999999998 69999999999999999999999999999999999999999999999999999999973
No 4
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=4.8e-78 Score=573.84 Aligned_cols=308 Identities=31% Similarity=0.550 Sum_probs=299.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCc-cccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+||+|+++|.||+++.+++|||++ +|+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|++++|+.+
T Consensus 7 ~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~ 86 (315)
T TIGR03182 7 LYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRAT 86 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 599999999999999999999999 6899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
|.|+|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|+|++|||++++|.+||+||+|++++||+|||
T Consensus 87 g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~v 166 (315)
T TIGR03182 87 GCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFV 166 (315)
T ss_pred CCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEE
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|.||+|+++++...+...+++++++++||+++++|||+|+.++++++++|++++|++++|+|||+.|||++|||++|++
T Consensus 167 v~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~- 245 (315)
T TIGR03182 167 IENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPA- 245 (315)
T ss_pred EEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCcc-
Confidence 9999999999887777778999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccc
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD 310 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~ 310 (340)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|++.|.|+++++|+|||+
T Consensus 246 ~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 246 KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 799999999998 6999999999999999999999999999999999999999999999999999999995
No 5
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=5.7e-76 Score=564.95 Aligned_cols=313 Identities=43% Similarity=0.711 Sum_probs=298.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 80 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~~ 80 (340)
+||+|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++|+++++||+|+++|++|+++.++|++++|+.+|
T Consensus 29 ~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g 108 (341)
T TIGR03181 29 LYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERG 108 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred CCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE
Q 019498 81 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 160 (340)
Q Consensus 81 ~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv 160 (340)
. + .++..++++.+++||.++|.|+|+|+|.|+.+++++|+|++|||++++|.++|+||+|++|+||+||||
T Consensus 109 ~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv 179 (341)
T TIGR03181 109 S--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFV 179 (341)
T ss_pred C--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEE
Confidence 2 1 135678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCC
Q 019498 161 RNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 240 (340)
Q Consensus 161 ~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~ 240 (340)
+||+|+++++...+...+++++++++||+++++|||+|+.+|+++++.|++++|++++|+|||++|||+.|||++|++..
T Consensus 180 ~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~ 259 (341)
T TIGR03181 180 QNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTR 259 (341)
T ss_pred ECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCcc
Confidence 99999998877666667899999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCccHHHHH
Q 019498 241 YRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 320 (340)
Q Consensus 241 Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~ 320 (340)
||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|+++|.|+++++|+|||++.||++++|+
T Consensus 260 YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~~~~~~~~~ 338 (341)
T TIGR03181 260 YRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAELPPELEEQR 338 (341)
T ss_pred CCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHH
Confidence 99999999998 59999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 019498 321 HSL 323 (340)
Q Consensus 321 ~~l 323 (340)
+.|
T Consensus 339 ~~~ 341 (341)
T TIGR03181 339 AEL 341 (341)
T ss_pred HhC
Confidence 754
No 6
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8e-77 Score=544.54 Aligned_cols=310 Identities=31% Similarity=0.509 Sum_probs=300.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCc-cccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+|++|+++|.||..+..+|++++| +|+|++.||||+++|+-.+|...|.++++||+|++.+.+|.++.++|+|++|+.+
T Consensus 64 ~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~ 143 (394)
T KOG0225|consen 64 YYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQA 143 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhcccc
Confidence 599999999999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
|+++|.+++||+..+ +|++.+|++|.++|.+.|+|+|.|+++.+.+++++.|||+.+||+++|++|+|+.|+||+|||
T Consensus 144 Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFv 221 (394)
T KOG0225|consen 144 GCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFV 221 (394)
T ss_pred ccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEE
Confidence 999999999998754 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|+||.|++.|+.++....+++.++. .| +|+++|||+|+.+|.+|.+.|.+++++++||+++|+.|||++|||.+|+.+
T Consensus 222 CENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~ 299 (394)
T KOG0225|consen 222 CENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGT 299 (394)
T ss_pred EccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCc
Confidence 9999999999999988889999999 46 999999999999999999999999999999999999999999999999879
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCc
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPS 314 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~ 314 (340)
.||+.||++..+.++|||..++++|++.++.|++|+++|+++++++|++++++|+++|+|++++|++|||...+.
T Consensus 300 sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~~~~ 374 (394)
T KOG0225|consen 300 SYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVKGTG 374 (394)
T ss_pred ccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhccCCC
Confidence 999999999998789999999999999999999999999999999999999999999999999999999997643
No 7
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1.1e-75 Score=574.20 Aligned_cols=310 Identities=27% Similarity=0.454 Sum_probs=299.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCc-cccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+|++|+++|.||+++.+++++|++ +++|++.||||+++|++.+|++.||++++||+|+++|++|++++++|++++|+.+
T Consensus 91 lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~ 170 (433)
T PLN02374 91 LYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 170 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCC
Confidence 599999999999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcC-------CCCeEEEEECCcccCcchHHHHHHHHHhC
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGDFHAALNFSAVT 152 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-------~~~~vv~~~GDG~~~~G~~~Eal~~A~~~ 152 (340)
|.|+|+++++|+.+++.++.+.+++||.++|.|+|+|+|.|+++ ++++|+|++|||++++|.|||+||+|+.|
T Consensus 171 g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~ 250 (433)
T PLN02374 171 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALW 250 (433)
T ss_pred CCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHh
Confidence 99999999999998888999999999999999999999999875 58899999999999999999999999999
Q ss_pred CCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 153 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 153 ~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
+|||||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|||+.|||++||
T Consensus 251 ~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GH 330 (433)
T PLN02374 251 KLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 330 (433)
T ss_pred CCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCc
Confidence 99999999999999998887777778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCC
Q 019498 233 TTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVS 312 (340)
Q Consensus 233 s~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~ 312 (340)
|++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++++++++++|++++++|+++|.|+++++|+|||++.
T Consensus 331 s~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 331 SLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred CCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999865 699999999998 699999999999999999999999999999999999999999999999999999999865
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=9.8e-74 Score=540.56 Aligned_cols=300 Identities=39% Similarity=0.654 Sum_probs=273.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCCCC
Q 019498 2 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 81 (340)
Q Consensus 2 y~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~~~ 81 (340)
|+.|+..|..|+++..+.++|+.+|+|++.||||++++++.+|++.||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 77777777777888888888877999999999999999999999999999999999999999999999999999998665
Q ss_pred CCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEE
Q 019498 82 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 82 ~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
+.|+. ++|+..+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 55555 67777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCC
Q 019498 162 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 241 (340)
Q Consensus 162 nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Y 241 (340)
||+|+++++..+++...+++++|++||+|+++|||+|+.+|++++++|++++|+++||+|||++|||+.|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 019498 242 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS 302 (340)
Q Consensus 242 r~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~ 302 (340)
|+++|++.|++++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998887677999999999999999999999999999999999999999999999985
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=5.9e-73 Score=534.72 Aligned_cols=292 Identities=42% Similarity=0.733 Sum_probs=283.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCcc-ccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 79 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~~-~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~ 79 (340)
+||+|+++|.||+++.++++||++. |+|++.||||+++|++.+|++.|+++++||+|+++|++|+++.++|++++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 6999999999999999999999996 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 80 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 80 ~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+|++|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999988777766789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 293 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a 293 (340)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999998865
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-73 Score=518.98 Aligned_cols=339 Identities=66% Similarity=1.130 Sum_probs=330.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCCC
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 80 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~~ 80 (340)
||++|.+...+|..+.+.+|||+|.||.++.|+||+.+|.++||.+.|+|++.||..|+++++|+++++++.+++|+..+
T Consensus 91 my~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d 170 (432)
T KOG1182|consen 91 MYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSD 170 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCC-CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 81 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 81 ~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~-~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
..+|++||+|+++++.+++..++++..+||.|+|+|+|.|+...+ +.+||++|||+.+||.+|.++|+|+..+.|+||+
T Consensus 171 ~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~ 250 (432)
T KOG1182|consen 171 LGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFF 250 (432)
T ss_pred cccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEE
Confidence 899999999999999999999999999999999999999977655 8999999999999999999999999999999999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|-||+|+||||++++.....++-+..+||+..++|||||+.+||.|+++|.+.+-...+|+|||+.|||.++||++||.+
T Consensus 251 CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt 330 (432)
T KOG1182|consen 251 CRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDST 330 (432)
T ss_pred EcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccc
Confidence 99999999999999999989999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCccHHHH
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQ 319 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~ 319 (340)
.||+.+|++.|.+.+.||.+||+++..+|+|+++...++++++++++-++++.|++-+.|++.++|+|||.++|.++.+|
T Consensus 331 ~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq 410 (432)
T KOG1182|consen 331 AYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQ 410 (432)
T ss_pred cccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCC
Q 019498 320 EHSLRETIKKHPQDYPSNVP 339 (340)
Q Consensus 320 ~~~l~~~~~~~p~~~~~~~~ 339 (340)
+..|++.+.++|+.||+..|
T Consensus 411 ~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 411 ELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred HHHHHHHHHhCcccCchhhc
Confidence 99999999999999997654
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=6e-58 Score=480.12 Aligned_cols=331 Identities=14% Similarity=0.150 Sum_probs=287.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHH------ccCCCcEEEc-cCccHHHHHH--cCCCHHHHH
Q 019498 1 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW--RGFSMQEFA 71 (340)
Q Consensus 1 ~y~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~------al~~~D~~~~-~yR~~~~~l~--~G~~~~~~~ 71 (340)
+|+.|+++|.||+.+..++..+|.. +..|||++.+++.. +++..|++++ +||||+++|+ +|++++++|
T Consensus 194 il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~if 270 (924)
T PRK09404 194 ILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLF 270 (924)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHH
Confidence 5899999999999999999887743 68999999999988 6668999999 5999999998 599999999
Q ss_pred HHhhcCC--CCCCCCCccccccCCCC-----CC-----ccccCccccchhhHHHHHHHHhhhcCCC------CeEEEEEC
Q 019498 72 NQCFGNK--ADYGKGRQMPIHYGSNK-----HN-----YFTVSSTIATQLPHAVGAAYALKMDRKD------ACAVTYFG 133 (340)
Q Consensus 72 ~~~~~~~--~~~~~G~~~~~h~~~~~-----~~-----~~~~~g~lG~~lp~A~G~A~a~k~~~~~------~~vv~~~G 133 (340)
++++|+. ++.+.++...+|++... .+ ...+.+++|.+.|+|+|+|+|.++++.+ .++||++|
T Consensus 271 aEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~G 350 (924)
T PRK09404 271 AEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHG 350 (924)
T ss_pred HHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCcccccceEEEEEec
Confidence 9999986 33333444555654322 11 1234689999999999999999998877 79999999
Q ss_pred Cccc-CcchHHHHHHHHHhCCCC---EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHH
Q 019498 134 DGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 209 (340)
Q Consensus 134 DG~~-~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a 209 (340)
||++ +||.|+|+||+|+.|++| +||||+||+|+++|+..++.+..+++++|++||+|+++|||+|+++|+.|++.|
T Consensus 351 DgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A 430 (924)
T PRK09404 351 DAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLA 430 (924)
T ss_pred CccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHH
Confidence 9998 799999999999999997 999999999999999888777778999999999999999999999999999999
Q ss_pred HHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 019498 210 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 289 (340)
Q Consensus 210 ~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a 289 (340)
++++|+++||+|||++|||++|||++|+|. ||+++|++.|++++||+.+|+++|+++|++|++++++++++++++|+++
T Consensus 431 ~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a 509 (924)
T PRK09404 431 LEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAG 509 (924)
T ss_pred HHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999884 9999999999866899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 019498 290 LQEAEKAEKPPISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 338 (340)
Q Consensus 290 ~~~a~~~~~p~~~~~~~~v~~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 338 (340)
+++|++. ++.+.+..+|... +....+..+.+.+.+..-|++|..|.
T Consensus 510 ~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 510 FEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999876 3556666666511 11223557778888899999998875
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=5.6e-51 Score=425.88 Aligned_cols=333 Identities=16% Similarity=0.134 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHcc------CCCcEEEcc-CccHHHHHH--cCCCHHHHHH
Q 019498 2 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW--RGFSMQEFAN 72 (340)
Q Consensus 2 y~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al------~~~D~~~~~-yR~~~~~l~--~G~~~~~~~~ 72 (340)
++.+..+-.||+.+...|--. ...+--|-|+...++-..+ +..|+++++ |||+.+.|+ +|++++++|+
T Consensus 195 l~~L~~ae~fE~fl~~kf~g~---KRFslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ 271 (929)
T TIGR00239 195 LSRLTAAEGFERFLGAKFPGA---KRFSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFS 271 (929)
T ss_pred HHHHHHHHHHHHHHHHhCCCC---ceeecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHH
Confidence 566777788888877665222 2345678888766554443 468999998 999999999 9999999999
Q ss_pred HhhcCCCCC-CCCCc-cccccCC-----------CCCCccccCccccchhhHHHHHHHHhhhcCC------CCeEEEEEC
Q 019498 73 QCFGNKADY-GKGRQ-MPIHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK------DACAVTYFG 133 (340)
Q Consensus 73 ~~~~~~~~~-~~G~~-~~~h~~~-----------~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~------~~~vv~~~G 133 (340)
++.|+..+. +.|++ ..+|++. ....+.+++|+|+...|+|+|.|+|.++++. +.++||++|
T Consensus 272 ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~G 351 (929)
T TIGR00239 272 EFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHG 351 (929)
T ss_pred HHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEec
Confidence 999987653 44555 4488773 2235778899999999999999999998765 578999999
Q ss_pred Cccc-CcchHHHHHHHHHhCCCCE---EEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHH
Q 019498 134 DGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 209 (340)
Q Consensus 134 DG~~-~~G~~~Eal~~A~~~~Lpv---i~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a 209 (340)
||++ +||.|+|+||+|+.|++|+ ||||+||+|+++|+...+.+...++++|++||+|+++|||+|+++|+.+++.|
T Consensus 352 DgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~A 431 (929)
T TIGR00239 352 DAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLA 431 (929)
T ss_pred cccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHH
Confidence 9997 8999999999999999997 99999999999998777777778999999999999999999999999999999
Q ss_pred HHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 019498 210 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 289 (340)
Q Consensus 210 ~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a 289 (340)
++++|+++||+|||++|||++|||++|+|..||+ ++++.|++++||+.+|+++|+++|++|++++++++++++++|+++
T Consensus 432 ve~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a 510 (929)
T TIGR00239 432 VEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAA 510 (929)
T ss_pred HHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988998 778888766899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcc--c---cccccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 019498 290 LQEAEKAEKPPIS--D---LFTDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 338 (340)
Q Consensus 290 ~~~a~~~~~p~~~--~---~~~~v~~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 338 (340)
++.+...+.|.+. + +..+.+.. .+....+.+..|.+.+...|++|.+|.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 511 DCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 9999876655433 1 22221111 233345778899999999999998775
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=7.3e-48 Score=354.23 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=198.2
Q ss_pred ccCCchHHHHHHHHHccCC------CcEEEcc-CccHHHHHH--cCCCHHHHHHHhhcCCC---CCCCCCccccccCCCC
Q 019498 28 LTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSNK 95 (340)
Q Consensus 28 ~~~~G~Ea~~~~~~~al~~------~D~~~~~-yR~~~~~l~--~G~~~~~~~~~~~~~~~---~~~~G~~~~~h~~~~~ 95 (340)
.+..|+|++.+++..+|+. +|+++++ ||||.++|. +|++++++|.++.++.+ +.+.++.+++|++...
T Consensus 15 fs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~ 94 (265)
T cd02016 15 FGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSS 94 (265)
T ss_pred EEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCc
Confidence 3599999999999999986 7999998 999999999 99999999999999877 4456778899987643
Q ss_pred -----------CCccccCccccchhhHHHHHHHHhhhcC-----CCCeEEEEECCccc-CcchHHHHHHHHHhCCCC---
Q 019498 96 -----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP--- 155 (340)
Q Consensus 96 -----------~~~~~~~g~lG~~lp~A~G~A~a~k~~~-----~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lp--- 155 (340)
..+.+++|+||.++|+|+|+|+|.|+++ .+.++||++|||++ +||.|+|+||+|+.|++|
T Consensus 95 ~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg 174 (265)
T cd02016 95 DRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGG 174 (265)
T ss_pred ccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCC
Confidence 3577889999999999999999999987 47899999999996 699999999999999998
Q ss_pred EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 156 VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 156 vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
+||||+||+|+++|+.+++.+..+++++|++||+|+++|||+|+++|++++++|++++|++++|+|||++|||++|||++
T Consensus 175 ~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 175 TIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred EEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 99999999999999998888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCh
Q 019498 236 DDSTKYRPV 244 (340)
Q Consensus 236 dd~~~Yr~~ 244 (340)
|+|. |+.+
T Consensus 255 D~p~-~t~p 262 (265)
T cd02016 255 DEPS-FTQP 262 (265)
T ss_pred CCcc-ccCC
Confidence 9874 5544
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.6e-33 Score=287.94 Aligned_cols=204 Identities=17% Similarity=0.160 Sum_probs=175.3
Q ss_pred HHHHHcCCc-cccccCCchHHHHHHHHHccC---CCcEEE--ccCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCcccc
Q 019498 16 YEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPI 89 (340)
Q Consensus 16 ~~~~~~g~~-~~~~~~~G~Ea~~~~~~~al~---~~D~~~--~~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~ 89 (340)
..+++.+++ ++++++.|+ +.++++.++. +.|+++ ++||+|++.+.+|.++..++.+++++.+|++++.. +.
T Consensus 30 ~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~ 106 (581)
T PRK12315 30 ALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SE 106 (581)
T ss_pred HHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CC
Confidence 344556777 599999999 5556666666 899999 89999999999999999999999999888877655 22
Q ss_pred ccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccc
Q 019498 90 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 169 (340)
Q Consensus 90 h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~ 169 (340)
|.. ..+|+.|.++|+|+|+|+|.|+++.+.+|+|++|||++++|++||+||+|+.|++|+|+||+||+|++++
T Consensus 107 ~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~ 179 (581)
T PRK12315 107 HDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAE 179 (581)
T ss_pred CCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCC
Confidence 311 3568899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccC---------ccCccchhhhhhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 019498 170 PISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 233 (340)
Q Consensus 170 ~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs 233 (340)
+... .....++..++++|||+++.| ||||+.++++++++|. +.++|++|+++|+|.+|..
T Consensus 180 ~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~----~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 180 NHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK----DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred CCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEeecCCCCC
Confidence 7642 223345678999999999998 9999999999999865 3689999999999999864
No 15
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=5.9e-32 Score=277.13 Aligned_cols=327 Identities=16% Similarity=0.160 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHcCCcc-ccccCCchHHHHHHHHHccC------CCcEEEcc-CccHHHHHH--cCCCHHHHHHHhhc
Q 019498 7 TLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLLW--RGFSMQEFANQCFG 76 (340)
Q Consensus 7 ~~R~~e~~~~~~~~~g~~~-~~~~~~G~Ea~~~~~~~al~------~~D~~~~~-yR~~~~~l~--~G~~~~~~~~~~~~ 76 (340)
-+-.||..+...| +| ...+--|-|....-+-..|+ -+++++++ |||+.+.|+ .|.+..++|.||-|
T Consensus 504 aaEaFEtFLqtky----vGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVLani~gK~y~qiF~EFeg 579 (1228)
T PRK12270 504 AAEAFETFLQTKY----VGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEG 579 (1228)
T ss_pred hHHHHHHHHhhhc----ccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHHHHHhcCCHHHHHHHhcC
Confidence 3345555554433 33 22334555655444444443 35688885 999998886 69999999999999
Q ss_pred CCCCC-CCCCc-cccccCCCC-----------CCccccCccccchhhHHHHHHHHhhhcC---C---CCeEEEEECCccc
Q 019498 77 NKADY-GKGRQ-MPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR---K---DACAVTYFGDGGT 137 (340)
Q Consensus 77 ~~~~~-~~G~~-~~~h~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~a~k~~~---~---~~~vv~~~GDG~~ 137 (340)
+.+.. ..|++ ..+|++... ..+-.+.++|...-|+.-|++.|.+..- . ....|+++||++|
T Consensus 580 n~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaaf 659 (1228)
T PRK12270 580 NLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAF 659 (1228)
T ss_pred CCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccc
Confidence 87543 34554 777876421 1134457899999999999999976432 2 3468999999998
Q ss_pred -CcchHHHHHHHHHhCCCC---EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHh
Q 019498 138 -SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA 213 (340)
Q Consensus 138 -~~G~~~Eal~~A~~~~Lp---vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~ 213 (340)
+||.++|.||+|..+++| +|+||.||+++++|......+.....++|+++++|++.|||+|+++|..+.+.|++++
T Consensus 660 agQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr 739 (1228)
T PRK12270 660 AGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYR 739 (1228)
T ss_pred cCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHH
Confidence 799999999999999998 8999999999999987766666678899999999999999999999999999999999
Q ss_pred HccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019498 214 IGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 293 (340)
Q Consensus 214 r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a 293 (340)
+++++|+||++.|||.+||+++|||. +..+..++...+++..-+.|.+.|+.+|.+|++|++++.++++.+++.++...
T Consensus 740 ~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~ 818 (1228)
T PRK12270 740 QRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEV 818 (1228)
T ss_pred HHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 34444444443233444789999999999999999999999999999999877
Q ss_pred HhCCCCC---ccccccccccC---CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 019498 294 EKAEKPP---ISDLFTDVYDV---SPSNLREQEHSLRETIKKHPQDYPSNV 338 (340)
Q Consensus 294 ~~~~~p~---~~~~~~~v~~~---~~~~~~~~~~~l~~~~~~~p~~~~~~~ 338 (340)
++....+ +...-.+--.+ .+....+..+++.+.....|++|..|.
T Consensus 819 re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 819 REAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 6543222 22111111111 122346788999999999999999874
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-31 Score=235.50 Aligned_cols=173 Identities=24% Similarity=0.279 Sum_probs=152.5
Q ss_pred CcEEEcc--CccHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCC-CCCCccccCccccchhhHHHHHHHHhh
Q 019498 47 DDFVVPQ--YREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 120 (340)
Q Consensus 47 ~D~~~~~--yR~~~---~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k 120 (340)
.|+++.+ |-.++ .+..+|+.|++-+.++.. .|+.+++|+.. ..+++..++|+||+||++|+|+|++.|
T Consensus 63 RDrfiLSKGHaa~AlYa~Lae~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~k 136 (243)
T COG3959 63 RDRFILSKGHAAPALYATLAEKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAK 136 (243)
T ss_pred CCeEEEecccchHHHHHHHHHcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHh
Confidence 4655543 33333 445699999998887765 37889999987 456899999999999999999999999
Q ss_pred hcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCH
Q 019498 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 121 ~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 199 (340)
+++.+..|++++|||+++||++|||+.+|++|+| |+|.||+.|+.|++..+.+..+..++.++++||||++++|||||+
T Consensus 137 l~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~ 216 (243)
T COG3959 137 LKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDI 216 (243)
T ss_pred hcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
+++.+|+.++.. ..++|++|.++|.+
T Consensus 217 ~~i~~a~~~~~~---~~~rP~~IIa~Tvk 242 (243)
T COG3959 217 EEIVEALEKAKG---SKGRPTVIIAKTVK 242 (243)
T ss_pred HHHHHHHHhhhc---cCCCCeEEEEeccc
Confidence 999999987764 24499999999965
No 17
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.97 E-value=7.2e-29 Score=229.99 Aligned_cols=182 Identities=26% Similarity=0.305 Sum_probs=153.5
Q ss_pred CcE-EEc-cCccHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccccCccccchhhHHHHHHHHhh
Q 019498 47 DDF-VVP-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 120 (340)
Q Consensus 47 ~D~-~~~-~yR~~~---~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k 120 (340)
.|. +++ .|...+ .+...|+.+++-+..++.. |+.+++|+.... +++...+|+||+++|+|+|+|+|.+
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~~------gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQL------GSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhccc------CCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 353 443 355544 4556887766777777653 667888887643 4778889999999999999999999
Q ss_pred hcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCH
Q 019498 121 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 121 ~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 199 (340)
+.+++++|+|++|||++++|.+||++++|++++|| +++|++||+|+++.+........++++++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 89999999999988776666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCC
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 237 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd 237 (340)
+++.+++++|.+. .++|++|+++|.|..||+..++
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e~ 237 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFMEN 237 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCccCC
Confidence 9999999988752 2789999999999999985543
No 18
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=2.4e-27 Score=244.27 Aligned_cols=166 Identities=25% Similarity=0.293 Sum_probs=144.7
Q ss_pred HHHcCC-CHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHhhhcC----------CCCe
Q 019498 60 LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDAC 127 (340)
Q Consensus 60 ~l~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~ 127 (340)
+...|+ .+.+-+.+++.. |+..++|+... .+++..++|+||+|++.|+|+|+|.|+.+ .+.+
T Consensus 75 l~~~G~~~~~e~L~~fr~~------gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~ 148 (663)
T PRK12754 75 LHLTGYDLPMEELKNFRQL------HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY 148 (663)
T ss_pred HHHcCCCCCHHHHHHhccC------CCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCE
Confidence 445786 444556667763 67788998763 57889999999999999999999999875 3689
Q ss_pred EEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcCceEEE-EcCCCHHHHHHH
Q 019498 128 AVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSA 205 (340)
Q Consensus 128 vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a 205 (340)
|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||++++ |||||+++|.+|
T Consensus 149 v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A 227 (663)
T PRK12754 149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRA 227 (663)
T ss_pred EEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHH
Confidence 9999999999999999999999999996 79999999999999988776 57899999999999999 899999999999
Q ss_pred HHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 206 VHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 206 ~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
+++|... .++|++|+++|++.+|.+..
T Consensus 228 ~~~a~~~---~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 228 VEEARAV---TDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred HHHHHhc---CCCCEEEEEEeeeccCcccc
Confidence 9887642 57999999999999998753
No 19
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=2.8e-27 Score=244.86 Aligned_cols=167 Identities=23% Similarity=0.267 Sum_probs=143.4
Q ss_pred HHHHcCCC-HHHHHHHhhcCCCCCCCCCccccccCC-CCCCccccCccccchhhHHHHHHHHhhhcC----------CCC
Q 019498 59 VLLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDA 126 (340)
Q Consensus 59 ~~l~~G~~-~~~~~~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~ 126 (340)
.+...|+. ..+-+.+++.. |+..++|+.. ..+++..++|++|+|+++|+|+|+|.|+.+ .+.
T Consensus 70 ~l~~~G~~~~~e~L~~fr~~------~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~ 143 (653)
T TIGR00232 70 LLHLTGYDLSIEDLKQFRQL------HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDH 143 (653)
T ss_pred HHHHcCCCCCHHHHHhcccC------CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCC
Confidence 34457864 55556677763 6778899876 457888899999999999999999999863 377
Q ss_pred eEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEE-cCCCHHHHHH
Q 019498 127 CAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYS 204 (340)
Q Consensus 127 ~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~ 204 (340)
+|+|++|||+++||.+||++++|+.++|| +|+||+||++++++++.... ..++.+++++|||++++| ||||+.++.+
T Consensus 144 ~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~ 222 (653)
T TIGR00232 144 YTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDA 222 (653)
T ss_pred EEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 89999999999999999999999999996 88899999999999988876 578999999999999999 9999999999
Q ss_pred HHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 205 AVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 205 a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
|+++|.+ ..++|++|+++|+|++|.+..
T Consensus 223 A~~~a~~---~~~~P~~I~~~T~~g~G~~~~ 250 (653)
T TIGR00232 223 AIEEAKA---SKDKPTLIEVTTTIGFGSPNK 250 (653)
T ss_pred HHHHHHh---CCCCCEEEEEEeeecccCccc
Confidence 8887753 124899999999999998744
No 20
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.96 E-value=4e-28 Score=231.64 Aligned_cols=167 Identities=29% Similarity=0.354 Sum_probs=134.9
Q ss_pred HHHcCC-CHHHHHHHhhcCCCCCCCCCccccccCC-CCCCccccCccccchhhHHHHHHHHhhhcC----------CCCe
Q 019498 60 LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDAC 127 (340)
Q Consensus 60 ~l~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~ 127 (340)
+...|+ .+.+.+.+++. .|+.+++|+.. ..+++..++|+||+|+++|+|+|+|.|+.+ -+.+
T Consensus 72 l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~ 145 (332)
T PF00456_consen 72 LALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHR 145 (332)
T ss_dssp HHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--
T ss_pred HHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccce
Confidence 335787 55666666765 37788999884 567889999999999999999999998642 3568
Q ss_pred EEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEE-cCCCHHHHHHH
Q 019498 128 AVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSA 205 (340)
Q Consensus 128 vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a 205 (340)
|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.+++++++... ..|+.+++++|||.+++| ||||+++|++|
T Consensus 146 vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A 224 (332)
T PF00456_consen 146 VYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAA 224 (332)
T ss_dssp EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHH
T ss_pred EEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHH
Confidence 999999999999999999999999999 899999999999998887544 468999999999999998 99999999999
Q ss_pred HHHHHHHhHccCCCEEEEEEEecCCCCCCCC
Q 019498 206 VHAAREMAIGEGRPILIEALTYRVGHHTTSD 236 (340)
Q Consensus 206 ~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~d 236 (340)
+.+|.. ..++|++|.++|.+.+|.+...
T Consensus 225 ~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 225 IEEAKA---SKGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp HHHHHH---STSS-EEEEEEE-TTTTSTTTT
T ss_pred HHHHHh---cCCCCceeecceEEecCchhhc
Confidence 998875 3479999999999999986543
No 21
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.96 E-value=2.5e-28 Score=217.49 Aligned_cols=167 Identities=19% Similarity=0.187 Sum_probs=139.5
Q ss_pred CCcE-EEc-cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccccCccccchhhHHHHHHHHhhhc
Q 019498 46 NDDF-VVP-QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 122 (340)
Q Consensus 46 ~~D~-~~~-~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~ 122 (340)
+.|. |++ .|.+.+++...|. .+-|.+++.. |+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~~------~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQY------GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhcC------CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 4564 444 4666666666776 3456666653 55 888876543 566778999999999999999999999
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEE-EcCCCHHH
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 201 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~ 201 (340)
+++++|+|++|||+++||++||++++|+.+++|+++||+||+|++++++. ++.++++++||.... |||+|+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999987664 477888899999986 99999999
Q ss_pred HHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 019498 202 IYSAVHAAREMAIGEGRPILIEALTYRVGH 231 (340)
Q Consensus 202 v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 231 (340)
+.+++++|.+ .++|++|+++|++.+|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999987754 6799999999998765
No 22
>PRK05899 transketolase; Reviewed
Probab=99.96 E-value=5e-27 Score=242.75 Aligned_cols=186 Identities=25% Similarity=0.247 Sum_probs=154.5
Q ss_pred CcEEE-c-cCcc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHh
Q 019498 47 DDFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 119 (340)
Q Consensus 47 ~D~~~-~-~yR~---~~~~l~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~ 119 (340)
.|.++ + .|-+ .++++..|+ ...+-+..++.. ++.++.|+... .+++..++|++|+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~~------~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQL------GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcCC------CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 47443 3 4666 456777897 666667776653 55567887753 3677778999999999999999999
Q ss_pred hhcCC----------CCeEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 120 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 120 k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +++|++||+|+++.+.... ...++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98766 7899999999999999999999999999996 7999999999998877643 3578999999999
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCC
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 243 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~ 243 (340)
|++++|||||++++.+++++|.+ .++|++|+++|+|.+||+..+++..|+.
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~ 264 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHG 264 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccC
Confidence 99999999999999999998875 4689999999999999997766555653
No 23
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=2.3e-27 Score=245.77 Aligned_cols=195 Identities=22% Similarity=0.217 Sum_probs=161.3
Q ss_pred CcE-EEc-cCcc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHh
Q 019498 47 DDF-VVP-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 119 (340)
Q Consensus 47 ~D~-~~~-~yR~---~~~~l~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~ 119 (340)
.|. |++ .|.. .++++..|+ .+.+-+.++++. |+..++|+... .+++..++|++|+|++.|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~~------~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQL------GSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCCC------CCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 474 443 5777 566777886 555667777763 56667887653 5678888999999999999999999
Q ss_pred hhcCC----------CCeEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 120 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 120 k~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
|+.+. +.+|+|++|||++++|++|||+++|+.++|| +|+||+||++++++++.... ..++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcC
Confidence 98653 7889999999999999999999999999995 89999999999999887653 478999999999
Q ss_pred ceEEEE-cCC-CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC---CCCChHHHHHHH
Q 019498 189 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 251 (340)
Q Consensus 189 ~~~~~V-dG~-d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~---~Yr~~~e~~~~~ 251 (340)
|+++.| ||| |+.++++|+++|.+. .++|++|+++|+|++||...+... .+.+++|++.++
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 999999 999 999999999988753 368999999999999986654332 356778877775
No 24
>PRK12753 transketolase; Reviewed
Probab=99.96 E-value=2.3e-27 Score=245.51 Aligned_cols=179 Identities=22% Similarity=0.214 Sum_probs=151.8
Q ss_pred cE-EEc-cCcc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHhh
Q 019498 48 DF-VVP-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 120 (340)
Q Consensus 48 D~-~~~-~yR~---~~~~l~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k 120 (340)
|. |++ .|.. .+++...|+ .+.+-|.+++.. |+..++|+... .+++..++|++|+|++.|+|+|+|.|
T Consensus 58 Drfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~~------~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k 131 (663)
T PRK12753 58 DRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQL------HSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAER 131 (663)
T ss_pred CcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhccC------CCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHH
Confidence 63 443 4666 345667886 555667777763 66778898763 57888899999999999999999999
Q ss_pred hcCC----------CCeEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhhcCc
Q 019498 121 MDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 189 (340)
Q Consensus 121 ~~~~----------~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 189 (340)
+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw 210 (663)
T PRK12753 132 TLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHW 210 (663)
T ss_pred HhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCC
Confidence 8752 6899999999999999999999999999995 89999999999999988765 5789999999999
Q ss_pred eEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCC
Q 019498 190 RSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 236 (340)
Q Consensus 190 ~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~d 236 (340)
+++. |||||+.++++|+++|.+ ..++|++|+++|++.+|++...
T Consensus 211 ~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 211 HVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred eEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCccc
Confidence 9995 999999999999998875 2578999999999999998643
No 25
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.95 E-value=1.5e-26 Score=221.87 Aligned_cols=178 Identities=19% Similarity=0.126 Sum_probs=150.2
Q ss_pred CcEEEc-cCcc---HHHHHHcCCCHHHHHHHhhcCCCCCCCCC--ccccccCCC-CC-CccccCccccchhhHHHHHHHH
Q 019498 47 DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYA 118 (340)
Q Consensus 47 ~D~~~~-~yR~---~~~~l~~G~~~~~~~~~~~~~~~~~~~G~--~~~~h~~~~-~~-~~~~~~g~lG~~lp~A~G~A~a 118 (340)
.|.|++ .|.+ ++++...|+.+.+-+.+++.. |+ .++.|+... .+ ++..++|++|+|+++|+|+|+|
T Consensus 60 RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla 133 (386)
T cd02017 60 GDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARF 133 (386)
T ss_pred CCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHH
Confidence 677554 3554 345667897666678888763 55 577777553 23 4788899999999999999999
Q ss_pred hhh-------cCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCc-cCccchhhhhhhcCc
Q 019498 119 LKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGV 189 (340)
Q Consensus 119 ~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~G~ 189 (340)
.|+ .+.+.+|+|++|||+++||++||++++|+.++| |+|+|+++|+++++.++... ....++.+++++|||
T Consensus 134 ~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW 213 (386)
T cd02017 134 NRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGW 213 (386)
T ss_pred HHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCC
Confidence 997 556789999999999999999999999999999 89999999999999988875 356789999999999
Q ss_pred eEEEEc---------------------------------------------------------------------CCCHH
Q 019498 190 RSIRVD---------------------------------------------------------------------GNDAL 200 (340)
Q Consensus 190 ~~~~Vd---------------------------------------------------------------------G~d~~ 200 (340)
.++.|| |||+.
T Consensus 214 ~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~ 293 (386)
T cd02017 214 NVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPR 293 (386)
T ss_pred EEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHH
Confidence 999998 99999
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 019498 201 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 233 (340)
Q Consensus 201 ~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs 233 (340)
+|.+|+.++.+. .++|++|.+.|.+.+|.+
T Consensus 294 ~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 294 KVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 999999987752 468999999999999987
No 26
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.3e-26 Score=227.65 Aligned_cols=331 Identities=13% Similarity=0.140 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHcc------CCCcEEEcc-CccHHHHHHc--CCCHHHHHHH
Q 019498 3 NDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLWR--GFSMQEFANQ 73 (340)
Q Consensus 3 ~~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al------~~~D~~~~~-yR~~~~~l~~--G~~~~~~~~~ 73 (340)
..+.++-.||+.+...+-.-| ...--|.|....|+-..+ ..+++|+++ |||+.+.|+. -.+++.+|.+
T Consensus 256 ~RL~~st~FE~FLa~Kw~seK---RFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfse 332 (1017)
T KOG0450|consen 256 DRLTRSTRFEEFLATKWPSEK---RFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSE 332 (1017)
T ss_pred HHHHHhhHHHHHHhhhCCccc---cccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHh
Confidence 334455578887655442221 223467888777776554 357888885 9999988863 4688999999
Q ss_pred hhcCCCCCCCCC-ccccccCCC---CC---------CccccCccccchhhHHHHHHHHhhhc-----CCCCeEEEEECCc
Q 019498 74 CFGNKADYGKGR-QMPIHYGSN---KH---------NYFTVSSTIATQLPHAVGAAYALKMD-----RKDACAVTYFGDG 135 (340)
Q Consensus 74 ~~~~~~~~~~G~-~~~~h~~~~---~~---------~~~~~~g~lG~~lp~A~G~A~a~k~~-----~~~~~vv~~~GDG 135 (340)
+.|..... .|+ ...+|++.. .. .+..+.++|...=|+.+|-..|.++. +.+...|.++||+
T Consensus 333 F~g~~~~D-eGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDa 411 (1017)
T KOG0450|consen 333 FSGLEAAD-EGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDA 411 (1017)
T ss_pred ccCCCCCc-CCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecch
Confidence 99954432 244 367776642 11 24566899999999999999998764 3445789999999
Q ss_pred cc-CcchHHHHHHHHHhCCC---CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHH
Q 019498 136 GT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 211 (340)
Q Consensus 136 ~~-~~G~~~Eal~~A~~~~L---pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~ 211 (340)
+| .||.++|.+.+...-+- ..|.||.||+.+++|......+.+...++|++.+.|.++|+++|+++|.-+++-|.+
T Consensus 412 aFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAe 491 (1017)
T KOG0450|consen 412 AFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAE 491 (1017)
T ss_pred hhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHH
Confidence 99 79999999988766443 579999999999988766666677788999999999999999999999999999999
Q ss_pred HhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019498 212 MAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 291 (340)
Q Consensus 212 ~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~ 291 (340)
+....++.++|+++|||..||++.|.| .+..+-.++..++++..+..|.+.|+++|.+|++++++..+.+..-++++++
T Consensus 492 WR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe 570 (1017)
T KOG0450|consen 492 WRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFE 570 (1017)
T ss_pred HHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 988899999999999999999999987 5788889999987778899999999999999999999999999999999999
Q ss_pred HHHhCCCCC----ccccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 019498 292 EAEKAEKPP----ISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 338 (340)
Q Consensus 292 ~a~~~~~p~----~~~~~~~v~~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 338 (340)
.+++...-. +++-+...+++. +....+.+..+...+...|++|..|+
T Consensus 571 ~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 571 RSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred hhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 887754322 122233344421 22235788999999999999999986
No 27
>PLN02790 transketolase
Probab=99.95 E-value=1.1e-26 Score=240.60 Aligned_cols=184 Identities=22% Similarity=0.212 Sum_probs=152.7
Q ss_pred CCcEEE-c-cCcc---HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCccccccCC-CCCCccccCccccchhhHHHHHHH
Q 019498 46 NDDFVV-P-QYRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 117 (340)
Q Consensus 46 ~~D~~~-~-~yR~---~~~~l~~G~--~~~~~~~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~ 117 (340)
..|.++ + .|.. .++++..|+ .+.+-|.+++.. |+..++|+.. ..+++..++|++|++++.|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~~------~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQW------GSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhccC------CCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 357444 3 4777 566777887 355567777763 6677889875 357888999999999999999999
Q ss_pred Hhhh-----cCC-----CCeEEEEECCcccCcchHHHHHHHHHhCCCC-EEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 118 ALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 118 a~k~-----~~~-----~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lp-vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
|.|+ .++ +.+|+|++|||++++|++|||+|+|+.++|| +|+||+||++++++++.... ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 343 6899999999999999999999999999995 89999999999999887554 5688999999
Q ss_pred cCceEEEEcC--CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 187 YGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 187 ~G~~~~~VdG--~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|||+++.||| ||++++++|+++|.+. .++|++|+++|++.+|.+...++.
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~~ 250 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANSY 250 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCCC
Confidence 9999999988 8999999999887652 579999999999999987544433
No 28
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.94 E-value=7.3e-26 Score=219.76 Aligned_cols=292 Identities=17% Similarity=0.161 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHccC------CCcEEEcc-CccHHHHHH--cCCCHHHHHHHh
Q 019498 4 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLLW--RGFSMQEFANQC 74 (340)
Q Consensus 4 ~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~------~~D~~~~~-yR~~~~~l~--~G~~~~~~~~~~ 74 (340)
.|+....||+.+...+-. + ....+-|.|.+.+-....|+ .+|+|+.. |||+..++. ..++|..+|..+
T Consensus 165 Lmlksq~fD~FlatKFpT--v-KRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~ 241 (913)
T KOG0451|consen 165 LMLKSQAFDNFLATKFPT--V-KRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKL 241 (913)
T ss_pred HHHhhhhHHHHHHhccch--h-hhhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHh
Confidence 455555555544332211 0 13456777877544443342 47888885 999998875 689999999999
Q ss_pred hcCCCCCC---CCCccccccCC--------CC--CCccccCccccchhhHHHHHHHHhhhcC------C--------CCe
Q 019498 75 FGNKADYG---KGRQMPIHYGS--------NK--HNYFTVSSTIATQLPHAVGAAYALKMDR------K--------DAC 127 (340)
Q Consensus 75 ~~~~~~~~---~G~~~~~h~~~--------~~--~~~~~~~g~lG~~lp~A~G~A~a~k~~~------~--------~~~ 127 (340)
.|...-+- .-+..-+|+.+ .+ ..+.++.++|...-|+|+|-+.+.+... | ...
T Consensus 242 ~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vl 321 (913)
T KOG0451|consen 242 SGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVL 321 (913)
T ss_pred cCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceE
Confidence 99876431 11222233322 11 1357778999999999999998876431 1 125
Q ss_pred EEEEECCccc-CcchHHHHHHHHHh--CCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 128 AVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 128 vv~~~GDG~~-~~G~~~Eal~~A~~--~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
.+.++|||+| .+|.++|+++++-. +++ ..+.+|.||+.+++++.++..+....++.+++++++++.|+|.||++|.
T Consensus 322 nv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevv 401 (913)
T KOG0451|consen 322 NVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVV 401 (913)
T ss_pred EEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHH
Confidence 6778999999 79999999999765 556 5799999999999999988877777889999999999999999999999
Q ss_pred HHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChH-HHHHHHHHHCCCCCHHHHHHHHHHH
Q 019498 204 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPV-TRFRKWIESNGWWNGDIESELRSSV 282 (340)
Q Consensus 204 ~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi-~~~~~~L~~~g~~~~~~~~~~~~~~ 282 (340)
+|.+-|++|.|+.++.++|++.|||..||++.||| .|.++-.++..+ ++..+ ..|.++|++.|++|++++++++++.
T Consensus 402 raTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~-aReSvPdlya~~L~~eg~~tee~vkE~~~~y 479 (913)
T KOG0451|consen 402 RATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVE-ARESVPDLYAQQLAKEGVLTEEKVKEMRDEY 479 (913)
T ss_pred HHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHH-hhhcccHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 589999888886 56655 4588999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 019498 283 RKQILHALQEAEKAEKPP 300 (340)
Q Consensus 283 ~~~~~~a~~~a~~~~~p~ 300 (340)
.+.+.+.++.+.....|+
T Consensus 480 ~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 480 MKYLNEELALAPAYQPPP 497 (913)
T ss_pred HHHHHHHHhcCCccCCCc
Confidence 999999988877664443
No 29
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.94 E-value=1.7e-25 Score=229.50 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=146.5
Q ss_pred CCc-EEEc-cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHhhhc
Q 019498 46 NDD-FVVP-QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD 122 (340)
Q Consensus 46 ~~D-~~~~-~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~ 122 (340)
+.| +|++ .|.+.+++...|. .+.+.+++.. |+ +++|+... .+++..++|++|+++|+|+|+|+|.|++
T Consensus 66 ~rDr~ils~GH~~y~~~~~~g~--~~~l~~~~~~------~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~ 136 (580)
T PRK05444 66 PKDRIIWDVGHQAYPHKILTGR--RDRFDTLRQK------GG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLK 136 (580)
T ss_pred CCccEEEeccHHHHHHHHHhCc--HHHhcCcccC------CC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhh
Confidence 457 4444 4777677777886 3445555552 44 77888764 3678889999999999999999999988
Q ss_pred -CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCc---cCccchhhhhhhcCceEE-EEcCC
Q 019498 123 -RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGN 197 (340)
Q Consensus 123 -~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~ 197 (340)
+++++|+|++|||+++||++||++++|+.+++|+++|++||+|++++++... ....++.+++++|||+++ .||||
T Consensus 137 ~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~ 216 (580)
T PRK05444 137 GGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGH 216 (580)
T ss_pred CCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCC
Confidence 5889999999999999999999999999999999999999999998876543 233567789999999999 58999
Q ss_pred CHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 198 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 198 d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
|+++++++++++.+ .++|++|+++|.|.+|.+..
T Consensus 217 d~~~l~~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 217 DLDALIETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred CHHHHHHHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99999999987764 57999999999999997654
No 30
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.94 E-value=2.1e-25 Score=229.60 Aligned_cols=181 Identities=18% Similarity=0.175 Sum_probs=146.9
Q ss_pred HccC-CCcE-EEc-cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCCCCcc-ccCccccchhhHHHHHHH
Q 019498 42 AAIK-NDDF-VVP-QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAY 117 (340)
Q Consensus 42 ~al~-~~D~-~~~-~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~ 117 (340)
..++ +.|. |++ .|.+.++++..|. .+.|.+++.. |+ +++|+.....++. .++|++|+++++|+|+|+
T Consensus 55 ~~~~~~rDr~i~s~GH~~Y~~~~~~G~--~~~l~~~r~~------g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~ 125 (617)
T TIGR00204 55 YVFNTPKDQFIWDVGHQAYPHKLLTGR--REKFSTLRQK------KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAV 125 (617)
T ss_pred hhCCCCCCcEEEecchHHHHHHHHhCc--HHHhcchhhc------CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHH
Confidence 3455 5674 444 5888889889997 3556667653 44 8888876555555 479999999999999999
Q ss_pred HhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccC---------------------
Q 019498 118 ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR--------------------- 176 (340)
Q Consensus 118 a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~--------------------- 176 (340)
|.|+++.+.+|+|++|||++++|.+||++|+|+.++||+|+||+||+++++++......
T Consensus 126 a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~ 205 (617)
T TIGR00204 126 AAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKI 205 (617)
T ss_pred HHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987652210
Q ss_pred ---cc---c-hhhh--------------hhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 019498 177 ---SD---G-AVVK--------------GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 234 (340)
Q Consensus 177 ---~~---~-~~~~--------------a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~ 234 (340)
.+ + +.++ +++|||.++ .|||||+.++.++++.+.+ .++|++|+++|.|.+|.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 206 FSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred HhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCch
Confidence 01 1 3333 899999999 7999999999999986653 5789999999999998654
Q ss_pred C
Q 019498 235 S 235 (340)
Q Consensus 235 ~ 235 (340)
.
T Consensus 282 ~ 282 (617)
T TIGR00204 282 A 282 (617)
T ss_pred h
Confidence 4
No 31
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.94 E-value=9.6e-25 Score=224.47 Aligned_cols=307 Identities=15% Similarity=0.140 Sum_probs=243.1
Q ss_pred ccCCchHHHHHHHHHcc------CCCcEEEcc-CccHHHHHH--cCCCHHHHHHHhhcCCCCCCCCCccccccCCC----
Q 019498 28 LTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN---- 94 (340)
Q Consensus 28 ~~~~G~Ea~~~~~~~al------~~~D~~~~~-yR~~~~~l~--~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~---- 94 (340)
.+--|-|+....+-..+ ...++++++ |||+.+.|. .|.+++.+|+||.|+......-+...+|.+..
T Consensus 204 FslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~ 283 (906)
T COG0567 204 FSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQ 283 (906)
T ss_pred ccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccc
Confidence 34567777655554433 457899996 999998885 79999999999999764321123355665431
Q ss_pred -C-----CCccccCccccchhhHHHHHHHHhhhcCC-----CCeEEEEECCccc-CcchHHHHHHHHHhCCC---CEEEE
Q 019498 95 -K-----HNYFTVSSTIATQLPHAVGAAYALKMDRK-----DACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFI 159 (340)
Q Consensus 95 -~-----~~~~~~~g~lG~~lp~A~G~A~a~k~~~~-----~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~L---pvi~v 159 (340)
. ..+..++++|....|+..|.+.|.+-... ....+.++||.++ +||.+.|.||+...-+- +.+.|
T Consensus 284 ~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHi 363 (906)
T COG0567 284 TDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHI 363 (906)
T ss_pred cCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEE
Confidence 1 12455689999999999999999875432 2456799999999 69999999999988654 88999
Q ss_pred EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCC
Q 019498 160 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 239 (340)
Q Consensus 160 v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~ 239 (340)
|.||+.+++|......+.+...+.|+.+++|+++|+|.||+++..+.+.|+++....+++++|++.|||..||+++|+|.
T Consensus 364 viNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs 443 (906)
T COG0567 364 VINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS 443 (906)
T ss_pred EEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc
Confidence 99999999988555556667788999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccC----C---
Q 019498 240 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV----S--- 312 (340)
Q Consensus 240 ~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~----~--- 312 (340)
+..+..++..+++..+...+.+.|+++|++++++++.+.++++..++.......... ..+.+...|.. .
T Consensus 444 -~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 519 (906)
T COG0567 444 -VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRH 519 (906)
T ss_pred -ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHH---hhhccccccccccCCcccc
Confidence 577888888987778999999999999999999999999999999998877654433 11111222211 1
Q ss_pred --CccHHHHHHHHHHHHHhCCCCCCCCC
Q 019498 313 --PSNLREQEHSLRETIKKHPQDYPSNV 338 (340)
Q Consensus 313 --~~~~~~~~~~l~~~~~~~p~~~~~~~ 338 (340)
+....+..+.|...+...|++|..|.
T Consensus 520 ~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 520 VDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred cccccCHHHHHHHHHHhhcCCcceehhH
Confidence 11234678889999999999998875
No 32
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.93 E-value=9.6e-26 Score=203.00 Aligned_cols=168 Identities=22% Similarity=0.307 Sum_probs=144.5
Q ss_pred CCchHHHHHHHHHccCC-CcEEEccCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCCCCccccCccccch
Q 019498 30 TSGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 108 (340)
Q Consensus 30 ~~G~Ea~~~~~~~al~~-~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~ 108 (340)
+.||++.++.+++.|.. .|.+++.|+.+. .| ++++|.++.. .|+ +++|+....+++...+|+||++
T Consensus 1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs~------~gg-~psH~~~~tpGi~~~~G~LG~g 67 (227)
T cd02011 1 GPGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFSF------PGG-IPSHAAPETPGSIHEGGELGYS 67 (227)
T ss_pred CCChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcCC------CCC-CCCCCcccCCCeeecccchhhH
Confidence 46999999988888886 699999999765 22 2556777632 234 8999988788999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchH---HHHHHHHHhCCC-CEEEEEEeCCccccccccCc-cCccchhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVK 183 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~---~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~-~~~~~~~~~ 183 (340)
+++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|++++++... .+..++.++
T Consensus 68 Ls~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~ 143 (227)
T cd02011 68 LSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEAL 143 (227)
T ss_pred HHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHH
Confidence 999999974 568899999999999999996 999999999999 88999999999999999855 456789999
Q ss_pred hhhcCceEEEEcCCCHHHHHHHHHHHHHHhH
Q 019498 184 GRAYGVRSIRVDGNDALAIYSAVHAAREMAI 214 (340)
Q Consensus 184 a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r 214 (340)
+++|||+++.|||||++++++++++|++++|
T Consensus 144 ~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 144 FRGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887654
No 33
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=215.89 Aligned_cols=163 Identities=25% Similarity=0.261 Sum_probs=140.0
Q ss_pred HcCC-CHHHHHHHhhcCCCCCCCCCccccccCC-CCCCccccCccccchhhHHHHHHHHhhhcC-----C-----CCeEE
Q 019498 62 WRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR-----K-----DACAV 129 (340)
Q Consensus 62 ~~G~-~~~~~~~~~~~~~~~~~~G~~~~~h~~~-~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~-----~-----~~~vv 129 (340)
..|+ ...+-+..|+.. |+-.|+||.. ..+++..++|+||+|++.|||+|+|.|+.. + |..++
T Consensus 79 l~Gy~ls~edLk~FRQ~------~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tY 152 (663)
T COG0021 79 LTGYDLSLEDLKNFRQL------GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTY 152 (663)
T ss_pred HccCCCCHHHHHhhccC------CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEE
Confidence 3565 333445667774 7778899874 367888999999999999999999988642 2 35899
Q ss_pred EEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEE-EEcCCCHHHHHHHHH
Q 019498 130 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVH 207 (340)
Q Consensus 130 ~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~ 207 (340)
|++|||+++||..+|+..+|+.++| ++|++.++|+++|++.+.... ..|..+|+++|||.++ .+||||++++.+|++
T Consensus 153 vl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~ 231 (663)
T COG0021 153 VLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIE 231 (663)
T ss_pred EEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHH
Confidence 9999999999999999999999999 899999999999999887766 5789999999999999 689999999999999
Q ss_pred HHHHHhHccCCCEEEEEEEecCCCCCC
Q 019498 208 AAREMAIGEGRPILIEALTYRVGHHTT 234 (340)
Q Consensus 208 ~a~~~~r~~~~P~lIe~~t~R~~gHs~ 234 (340)
+|+. ..++|++|+|+|.-.+|-..
T Consensus 232 ~Ak~---~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 232 EAKA---STDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred HHHh---cCCCCeEEEEEeeeecCCCC
Confidence 9986 37799999999998888766
No 34
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.92 E-value=1.1e-23 Score=217.82 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=149.8
Q ss_pred CcEEEccCccHH------HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-C-CccccCccccchhhHHHHHHHH
Q 019498 47 DDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-H-NYFTVSSTIATQLPHAVGAAYA 118 (340)
Q Consensus 47 ~D~~~~~yR~~~------~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~-~~~~~~g~lG~~lp~A~G~A~a 118 (340)
.|.|++ .||+ .+...|+.+++.+.+|+... .|+++++|+.... + ++..++|+||+|+++|+|+|++
T Consensus 131 rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala 204 (885)
T TIGR00759 131 GDLVFF--QGHAAPGIYARAFLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARF 204 (885)
T ss_pred CCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHH
Confidence 586555 5554 34458977778888887631 1566777776532 3 4777899999999999999999
Q ss_pred hhh-------cCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccC-ccchhhhhhhcCc
Q 019498 119 LKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGV 189 (340)
Q Consensus 119 ~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~ 189 (340)
.|+ +..+.+|+|++|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||
T Consensus 205 ~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW 284 (885)
T TIGR00759 205 MKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGW 284 (885)
T ss_pred HHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCC
Confidence 996 567889999999999999999999999999999 9999999999999999886544 4689999999999
Q ss_pred eEEEE---------------------------------------------------------------------cCCCHH
Q 019498 190 RSIRV---------------------------------------------------------------------DGNDAL 200 (340)
Q Consensus 190 ~~~~V---------------------------------------------------------------------dG~d~~ 200 (340)
.+++| +|||+.
T Consensus 285 ~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~ 364 (885)
T TIGR00759 285 NVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPR 364 (885)
T ss_pred EEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHH
Confidence 99999 599999
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 019498 201 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 233 (340)
Q Consensus 201 ~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs 233 (340)
+|++|++.|.+. .++|++|.++|.+.+|.+
T Consensus 365 ~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 365 KVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 999999988763 458999999999999987
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.92 E-value=2.5e-23 Score=217.49 Aligned_cols=182 Identities=21% Similarity=0.193 Sum_probs=146.6
Q ss_pred CcEEEc-cCccHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCC-CC-CccccCccccchhhHHHHHHHHhh
Q 019498 47 DDFVVP-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALK 120 (340)
Q Consensus 47 ~D~~~~-~yR~~~---~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~-~~~~~~g~lG~~lp~A~G~A~a~k 120 (340)
.|+|++ .|-+.+ .+...|+.+++-+.+|+... .+++++.|+.+. .+ ++..++|+||+|+++|+|+|++.|
T Consensus 131 rD~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~k 206 (889)
T TIGR03186 131 GDLVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMR 206 (889)
T ss_pred CCEEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHH
Confidence 576555 344443 23457977777788887642 144566654332 23 467789999999999999999988
Q ss_pred hc-------CCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccC-ccchhhhhhhcCceE
Q 019498 121 MD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRS 191 (340)
Q Consensus 121 ~~-------~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~ 191 (340)
+. ..+.+|+|++|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||.+
T Consensus 207 yl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~v 286 (889)
T TIGR03186 207 YLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNV 286 (889)
T ss_pred HHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEE
Confidence 43 23688999999999999999999999999999 8999999999999998886433 468999999999999
Q ss_pred EEE---------------------------------------------------------------------cCCCHHHH
Q 019498 192 IRV---------------------------------------------------------------------DGNDALAI 202 (340)
Q Consensus 192 ~~V---------------------------------------------------------------------dG~d~~~v 202 (340)
++| +|||+.+|
T Consensus 287 i~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i 366 (889)
T TIGR03186 287 IKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKL 366 (889)
T ss_pred EEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHH
Confidence 999 69999999
Q ss_pred HHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 203 YSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 203 ~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
++|+++|.+. .++|++|.++|.+.+|.+..
T Consensus 367 ~~A~~~A~~~---~~~PTvIla~TvkG~G~~~~ 396 (889)
T TIGR03186 367 YAAYDRAVRH---EGRPTVILAKTMKGFGMGAI 396 (889)
T ss_pred HHHHHHHHhC---CCCCEEEEEEeeecCCCCcc
Confidence 9999998863 46899999999999986543
No 36
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=2e-23 Score=213.49 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=144.9
Q ss_pred CCcEEEc--cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCC-CCCccccCccccchhhHHHHHHHHhhhc
Q 019498 46 NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD 122 (340)
Q Consensus 46 ~~D~~~~--~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~-~~~~~~~~g~lG~~lp~A~G~A~a~k~~ 122 (340)
+.|.++. .|.+.++.+..|.. .-|.+++.. |+ +++|+... .++...++|++|++|++|+|+|+|.+++
T Consensus 126 p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~~------gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~ 196 (641)
T PLN02234 126 PHDKILWDVGHQSYPHKILTGRR--GKMKTIRQT------NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLK 196 (641)
T ss_pred CCCeEEEecchhHHHHHHHHhhh--hhhcccccC------CC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhC
Confidence 5685443 58888888887762 235555542 44 78887654 3577888999999999999999999999
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcc------ccccccCccCc---------------cchh
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS---------------DGAV 181 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~------~~~~~~~~~~~---------------~~~~ 181 (340)
+.+..|+|++|||++++|++||||+.|+..+-|+|+|+++|+.+ .+.++...... .++.
T Consensus 197 g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~ 276 (641)
T PLN02234 197 GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSS 276 (641)
T ss_pred CCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHH
Confidence 99999999999999999999999999997667999999999984 33333322111 2567
Q ss_pred hhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCC
Q 019498 182 VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 237 (340)
Q Consensus 182 ~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd 237 (340)
+++++|||.++ .|||||++++.++++++.+. ..++|++|.++|.+.+|.+..+.
T Consensus 277 ~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 277 TLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 89999999999 99999999999999877542 22589999999999999987654
No 37
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=4.1e-23 Score=213.37 Aligned_cols=178 Identities=21% Similarity=0.198 Sum_probs=140.9
Q ss_pred CCcE-EEc-cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccccCccccchhhHHHHHHHHhhhc
Q 019498 46 NDDF-VVP-QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 122 (340)
Q Consensus 46 ~~D~-~~~-~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~ 122 (340)
+.|. |++ .|.+.++++..|. .+.|.+++.. |+ +++|+...+ ++.....|+-++++++|+|+|+|.++.
T Consensus 68 prDr~i~s~GH~~Y~~~~l~g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~ 138 (641)
T PRK12571 68 PKDKLVWDVGHQCYPHKILTGR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALG 138 (641)
T ss_pred CCCcEEEECchHHHHHHHHhCC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHh
Confidence 5674 443 5888888888886 4567777763 44 677766532 222223444466789999999999999
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccccccc-------CccCccch---------------
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA--------------- 180 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~-------~~~~~~~~--------------- 180 (340)
+++++|+|++|||++++|++||++++|+.+++|+++|++||++++++++. +......+
T Consensus 139 ~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (641)
T PRK12571 139 QPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLP 218 (641)
T ss_pred CCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999988774 21112111
Q ss_pred --------------------hhhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 181 --------------------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 181 --------------------~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
.+++++|||.++ .|||||++++.+|++++.+. .++|++|+++|.+.+|.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 219 GPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchh
Confidence 378999999999 79999999999999887642 47899999999999998754
No 38
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.1e-22 Score=200.67 Aligned_cols=218 Identities=22% Similarity=0.230 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCchHHHHHHHHHccC---------CCcEEE-c-cCcc---HHHHHHcCCCHHH
Q 019498 4 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVV-P-QYRE---PGVLLWRGFSMQE 69 (340)
Q Consensus 4 ~M~~~R~~e~~~~~~~~~g~~~~~~~~~G~Ea~~~~~~~al~---------~~D~~~-~-~yR~---~~~~l~~G~~~~~ 69 (340)
.|.++|..+-.+...-..|..++..+.. +...+-.-..|+ ..|-++ + .|-+ .+++...|....+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4567888887777776676644332211 111111112222 135333 3 3666 4667778987888
Q ss_pred HHHHhhcCCCCCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCC-CCeEEEEECCcccCcchHHHHHHH
Q 019498 70 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 148 (340)
Q Consensus 70 ~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~~G~~~Eal~~ 148 (340)
-|.+|+.. |+..+.|+..+.++....+|++|+|++.|+|+|++.|+.+. +..|+|++|||+++||++|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 88888885 67788898876677888899999999999999999999887 889999999999999999999999
Q ss_pred HHhCCC-CEEEEEEeCCccccccccCccCccchhh-hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 149 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 149 A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
|+.++| ++|+|.+||+.+++++++..+. .|+.+ ++++|||++..|||+|++++.+++.+|.. ..++|+.|-++|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 8899999999999988877765 45666 99999999999999999999999999874 367999999999
Q ss_pred ecCCCCC
Q 019498 227 YRVGHHT 233 (340)
Q Consensus 227 ~R~~gHs 233 (340)
+...|-.
T Consensus 241 ~~g~G~~ 247 (632)
T KOG0523|consen 241 FIGRGSP 247 (632)
T ss_pred eeecCcc
Confidence 9988743
No 39
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.90 E-value=3.5e-22 Score=209.68 Aligned_cols=179 Identities=21% Similarity=0.186 Sum_probs=149.0
Q ss_pred CCcEEEccCccHH------HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-C-CccccCccccchhhHHHHHHH
Q 019498 46 NDDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-H-NYFTVSSTIATQLPHAVGAAY 117 (340)
Q Consensus 46 ~~D~~~~~yR~~~------~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~-~~~~~~g~lG~~lp~A~G~A~ 117 (340)
..|.|++ .||+ .+...|...++-|..|+... .|++++.|+.... + ++..++|+||.|++.|+|+|+
T Consensus 144 ~~D~V~s--kGHasp~lYA~~~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~ 217 (896)
T PRK13012 144 GGDLVYF--QPHSAPGIYARAFLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQAR 217 (896)
T ss_pred CCCEEEE--CcchHHHHHHHHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHH
Confidence 4686554 5554 23457876777788887542 1466788876543 3 466789999999999999999
Q ss_pred Hhhh-------cCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccC-ccchhhhhhhcC
Q 019498 118 ALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYG 188 (340)
Q Consensus 118 a~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G 188 (340)
+.|+ ...+++|+||+|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++||
T Consensus 218 ~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~G 297 (896)
T PRK13012 218 FMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAG 297 (896)
T ss_pred hcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCC
Confidence 9983 456789999999999999999999999999999 9999999999999998876544 468999999999
Q ss_pred ceEEEE--------------------------c-------------------------------------------CCCH
Q 019498 189 VRSIRV--------------------------D-------------------------------------------GNDA 199 (340)
Q Consensus 189 ~~~~~V--------------------------d-------------------------------------------G~d~ 199 (340)
|.+++| | |||+
T Consensus 298 W~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~ 377 (896)
T PRK13012 298 WNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDP 377 (896)
T ss_pred CEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCH
Confidence 999999 8 9999
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 233 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs 233 (340)
.+|++|++.|.+. .++|++|.++|.+.+|-+
T Consensus 378 ~~i~~A~~~a~~~---~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 378 RKVYAAYAAAVRH---KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HHHHHHHHHHHhC---CCCCEEEEEEeeecCCCC
Confidence 9999999988763 468999999999999976
No 40
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.90 E-value=2.1e-22 Score=207.60 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=140.7
Q ss_pred CCcEEEc--cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccccCccccchhhHHHHHHHHhhhc
Q 019498 46 NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 122 (340)
Q Consensus 46 ~~D~~~~--~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~ 122 (340)
+.|.++. .|...++++..|. .+-|.+++.. |+ +++|+.... ++...++|++|++++.|+|+|+|.+++
T Consensus 93 p~Dr~i~s~GH~ay~~~~l~gr--~~~l~~~r~~------g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~ 163 (677)
T PLN02582 93 PQDKILWDVGHQSYPHKILTGR--RDKMHTMRQT------NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLK 163 (677)
T ss_pred CCCeEEEECcchHHHHHHHHcc--HHHhcccccC------CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhc
Confidence 6785553 5888888888887 3346666652 44 888876543 567788999999999999999999999
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc-cc--------cccccCc-------cCc---------
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS--------- 177 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~--------~~~~~~~-------~~~--------- 177 (340)
+.+.+|+|++|||++++|++||+||.|+.+++|+|+||+||+. ++ +.+.... ...
T Consensus 164 ~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~ 243 (677)
T PLN02582 164 GKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREV 243 (677)
T ss_pred CCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999996 22 1111000 000
Q ss_pred ------------cchh----------------hhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 178 ------------DGAV----------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 178 ------------~~~~----------------~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.++. .++++|||.++ .|||||++++.++++++.+. ..++|++|+++|.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~K 321 (677)
T PLN02582 244 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEK 321 (677)
T ss_pred HHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecC
Confidence 0111 24889999977 79999999999999988752 11699999999999
Q ss_pred CCCCCCC
Q 019498 229 VGHHTTS 235 (340)
Q Consensus 229 ~~gHs~~ 235 (340)
.+|...+
T Consensus 322 GkG~~~a 328 (677)
T PLN02582 322 GRGYPYA 328 (677)
T ss_pred CCCCChh
Confidence 9998765
No 41
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.89 E-value=1.9e-21 Score=203.56 Aligned_cols=177 Identities=21% Similarity=0.225 Sum_probs=148.0
Q ss_pred CcEEEccCccHH------HHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CC-ccccCccccchhhHHHHHHHH
Q 019498 47 DDFVVPQYREPG------VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYA 118 (340)
Q Consensus 47 ~D~~~~~yR~~~------~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~-~~~~~g~lG~~lp~A~G~A~a 118 (340)
.|+|+ ..||+ .+...|...++-|..|+.. +.|+++++|+.... +. +..++++||.|++.|+|+|++
T Consensus 137 ~D~V~--skGHasp~lYA~~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~ 210 (891)
T PRK09405 137 GDLVF--FQGHASPGIYARAFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARF 210 (891)
T ss_pred CCEEE--ECchHHHHHHHHHHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHh
Confidence 58666 35554 3445787777778888764 23667888876543 33 566789999999999999999
Q ss_pred hhh-------cCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccC-ccchhhhhhhcCc
Q 019498 119 LKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGV 189 (340)
Q Consensus 119 ~k~-------~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~ 189 (340)
.|+ ...+++|+|++|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||
T Consensus 211 ~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW 290 (891)
T PRK09405 211 LKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGW 290 (891)
T ss_pred CccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCC
Confidence 993 456789999999999999999999999999999 9999999999999998876433 4689999999999
Q ss_pred eEEEE--------------------------c-------------------------------------------CCCHH
Q 019498 190 RSIRV--------------------------D-------------------------------------------GNDAL 200 (340)
Q Consensus 190 ~~~~V--------------------------d-------------------------------------------G~d~~ 200 (340)
.+++| | |||+.
T Consensus 291 ~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~ 370 (891)
T PRK09405 291 NVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPR 370 (891)
T ss_pred EEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHH
Confidence 99999 4 99999
Q ss_pred HHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 201 AIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 201 ~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
+|++|++.|.+. .++|++|.++|.+.+|.
T Consensus 371 ~i~~A~~~A~~~---~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 371 KVYAAYKAAVEH---KGQPTVILAKTIKGYGM 399 (891)
T ss_pred HHHHHHHHHHhC---CCCCEEEEEeceecCCC
Confidence 999999988863 46899999999999997
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.84 E-value=6.6e-20 Score=189.89 Aligned_cols=202 Identities=21% Similarity=0.231 Sum_probs=158.3
Q ss_pred ccccccCCchHHHHHHHHHccCCC--cEEEccCccHH------HHHHcC--------CCHHHH-HHHhhcCCCCCCCCCc
Q 019498 24 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPG------VLLWRG--------FSMQEF-ANQCFGNKADYGKGRQ 86 (340)
Q Consensus 24 ~~~~~~~~G~Ea~~~~~~~al~~~--D~~~~~yR~~~------~~l~~G--------~~~~~~-~~~~~~~~~~~~~G~~ 86 (340)
+|.+-++.|+--+.+|+...++.. |.++..--||+ .+...| ++.++. |..++.+... -++
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~---pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF---PGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC---CCC
Confidence 367888999999999998888764 65565555554 223356 333331 4433433211 136
Q ss_pred cccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchH---HHHHHHHHhCCC-CEEEEEEe
Q 019498 87 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 162 (340)
Q Consensus 87 ~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~---~Eal~~A~~~~L-pvi~vv~n 162 (340)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++ +|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 78898877789999999999999999999965 47889999999999999984 888888888888 78999999
Q ss_pred CCccccccccCc-cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHH-----------HhHcc---CCCE--EEEEE
Q 019498 163 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEAL 225 (340)
Q Consensus 163 N~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~-----------~~r~~---~~P~--lIe~~ 225 (340)
|+|++++++... .+..++.+++++|||+++.|||+|+.+++.++++|++ .+|.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999998865 3457899999999999999999999999998776654 33434 5899 99999
Q ss_pred EecCCCC
Q 019498 226 TYRVGHH 232 (340)
Q Consensus 226 t~R~~gH 232 (340)
|.+..|-
T Consensus 282 T~kG~g~ 288 (785)
T PRK05261 282 TPKGWTG 288 (785)
T ss_pred CCccCCC
Confidence 9987763
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.82 E-value=7.7e-20 Score=159.64 Aligned_cols=113 Identities=22% Similarity=0.266 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe-CCccccccccC-------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISD------- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n-N~~~~~~~~~~------- 173 (340)
.|+||+++|.|+|++++. ++++|+|++|||++++ ..++|.+|++++||+++||.| |+|++....+.
T Consensus 47 ~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 120 (172)
T cd02004 47 FGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGL 120 (172)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCC
Confidence 578999999999998875 6899999999999985 457899999999998777655 56877543322
Q ss_pred ----ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 ----~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.....|+.+++++||+++.+|+ +++++.++++++.+ .++|+|||+.+
T Consensus 121 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 121 PVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1235689999999999999999 79999998888775 57999999976
No 44
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.82 E-value=6.1e-20 Score=163.81 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=96.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE-EeCCccccccccC-------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~~------- 173 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++|| +|++|++....+.
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~ 125 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGM--SMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRF 125 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCc
Confidence 588999999999998874 7899999999999986 3566999999999997777 5556765432110
Q ss_pred ---ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 174 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 174 ---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
....+||+++|++||+++.+|+ +++++.+++++|++.+|. ++|+|||+.+.+.
T Consensus 126 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 126 VGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 1234789999999999999999 899999999999865444 7899999999653
No 45
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.81 E-value=1.4e-19 Score=162.18 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|++ ...+|.+|++++||+++||.||+ |++....+
T Consensus 56 ~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~ 129 (202)
T cd02006 56 AGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQF--MIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQ 129 (202)
T ss_pred ccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhc--cHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccc
Confidence 589999999999998885 7899999999999985 45679999999999977777765 66432110
Q ss_pred ------C------ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 173 ------D------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 173 ------~------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
. ....+||+++|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 130 VNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred cccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0 0013789999999999999999 99999999999986544457999999998543
No 46
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.81 E-value=3.4e-19 Score=156.22 Aligned_cols=113 Identities=29% Similarity=0.303 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC-------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------- 173 (340)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|.+|.++++|+++||.||+ |++....+.
T Consensus 48 ~g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~ 121 (178)
T cd02002 48 GGGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGP 121 (178)
T ss_pred CccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCc
Confidence 389999999999999885 688999999999999764 679999999999988887775 776532110
Q ss_pred ----------ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 ----------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 ----------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.....|+.+++++||+++.+|+ +++++.+++++|.+ .++|+|||+.+
T Consensus 122 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 122 GENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred ccccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1124689999999999999999 69999999998875 57999999864
No 47
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.80 E-value=2.3e-19 Score=155.12 Aligned_cols=116 Identities=30% Similarity=0.350 Sum_probs=95.9
Q ss_pred cccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccccccc------
Q 019498 99 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 172 (340)
Q Consensus 99 ~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~------ 172 (340)
....|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|.++++|+++||.||+....+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 345789999999999999986 5789999999999996 5799999999999999988888754433221
Q ss_pred -----CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 173 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 173 -----~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
......|+.+++++||+++.+|+ +++++.++++++.+ .++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 22235689999999999999999 68888888887764 68999999975
No 48
>PRK06163 hypothetical protein; Provisional
Probab=99.80 E-value=1.8e-18 Score=154.84 Aligned_cols=131 Identities=20% Similarity=0.162 Sum_probs=102.0
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhC-CCCEEEEEEeC-CccccccccC-ccCc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRS 177 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lpvi~vv~nN-~~~~~~~~~~-~~~~ 177 (340)
..|+||+++|.|+|+++|. |+++|||++|||+|+ +...+|.+++++ ++|+++||.|| +|++...... ....
T Consensus 55 ~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~ 128 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQT 128 (202)
T ss_pred eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCC
Confidence 4789999999999999885 789999999999998 455779999887 68987777666 6776432211 1234
Q ss_pred cchhhhhhhcCce-EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHH
Q 019498 178 DGAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 248 (340)
Q Consensus 178 ~~~~~~a~a~G~~-~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~ 248 (340)
.||.++|++||++ +.+|+ +++++..+++++++ .++|+|||+.+.+.. +-|..+|++.|.+
T Consensus 129 ~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 129 VDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 7899999999998 67898 99999999999875 589999999986542 2233457776653
No 49
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.79 E-value=3.7e-18 Score=160.15 Aligned_cols=172 Identities=18% Similarity=0.113 Sum_probs=133.1
Q ss_pred cCccHHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCC
Q 019498 53 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 125 (340)
Q Consensus 53 ~yR~~~~~l~~G~~~~-~~~~~~~~~~~------~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~ 125 (340)
.||||+.+..+|..+. .++.+.++..+ |++.+.+..+|+.. .++...++.+|.+.++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998776 78888887665 44445444444433 245556789999999999999999877655
Q ss_pred C-eEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC-----------------ccCccchhhhhhhc
Q 019498 126 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-----------------QFRSDGAVVKGRAY 187 (340)
Q Consensus 126 ~-~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~-----------------~~~~~~~~~~a~a~ 187 (340)
. .|++++|||++..+.+ |+|+.|..+++|+++||.||.+.+.|-.+. .....|+..++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 5666999999987776 999999999999999999999755432221 11234788999999
Q ss_pred CceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 019498 188 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 231 (340)
Q Consensus 188 G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 231 (340)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+.-..+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~ 211 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPG 211 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCC
Confidence 99765 6788899999999999986 5899999997654433
No 50
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.79 E-value=2.5e-18 Score=152.36 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=94.7
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCC-ccccccccCccCcc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 178 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~~~~ 178 (340)
++|+||+++|.|+|+++|. ++++|||++|||+|++ ..++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 4599999999999999885 6889999999999984 5678999999997 6766665554 66543222222347
Q ss_pred chhhhhhhcCceE-EEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 179 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 179 ~~~~~a~a~G~~~-~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
|+.++|++||+.+ .+|+ +++++.++++++++ .++|+|||+.+.+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5798 89999999998875 579999999996654
No 51
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.78 E-value=2.1e-18 Score=152.61 Aligned_cols=115 Identities=25% Similarity=0.325 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc------c--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI------S-- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~------~-- 172 (340)
.|+||+++|.|+|++++. ++++||+++|||+|+. ...+|.+|+++++|+++||.||+ |++.... .
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~--~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQM--NIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhc--cHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 479999999999998885 6889999999999984 45669999999999977776665 4432210 0
Q ss_pred ---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......|++++|++||+++.+|+ +.+++.+++++|.+ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11134689999999999999999 78888888887764 6899999999954
No 52
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.77 E-value=5.2e-18 Score=149.09 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=92.5
Q ss_pred ccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-CccccccccC-----
Q 019498 100 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD----- 173 (340)
Q Consensus 100 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~----- 173 (340)
...|+||+++|.|+|+++|. ++++||+++|||+|++.. +++|.+|+++++|+++||.|| .|++......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 35789999999999999886 688999999999997421 688999999999986666555 5655432211
Q ss_pred ----ccCccchhhhhhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 ----QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 ----~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.....|+.++|++||+++.+| ++++.+++.+++++|++ .++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112368999999999999998 67777777788888875 58999999864
No 53
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.77 E-value=1.3e-17 Score=165.88 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=151.8
Q ss_pred ccccCCchHHHHHHHHHccC-CCcEEE--ccCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCcccc
Q 019498 26 FYLTTSGEEAINIASAAAIK-NDDFVV--PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTV 101 (340)
Q Consensus 26 ~~~~~~G~Ea~~~~~~~al~-~~D~~~--~~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~~ 101 (340)
..-++.|---.-+++-..++ +.|.++ ..|....|-+..|.. +.|.+++.+ .+++.++...+ ..-+..
T Consensus 43 HlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~ 113 (627)
T COG1154 43 HLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFG 113 (627)
T ss_pred ccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCch--hhcchhhhc-------CCCCCCCCcccCCCcccc
Confidence 44555554444456666665 688655 479999999999973 778888874 34555444332 234567
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHH-hCCCCEEEEEEeCCccccccccCcc-----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQF----- 175 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~-~~~Lpvi~vv~nN~~~~~~~~~~~~----- 175 (340)
+|+-+.+++.|+|+|.|..+++.++.||+++|||++.-|+.+||||.|+ ..+-|+|+|+++|..+|+.+.....
T Consensus 114 ~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~ 193 (627)
T COG1154 114 VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLAR 193 (627)
T ss_pred cCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998 4446999999999999986543100
Q ss_pred --Ccc-----------------------------c------hhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccC
Q 019498 176 --RSD-----------------------------G------AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEG 217 (340)
Q Consensus 176 --~~~-----------------------------~------~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~ 217 (340)
..+ . ...+++.+|+.++- +||||++++..+++.+.+ .+
T Consensus 194 l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~ 269 (627)
T COG1154 194 LRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LK 269 (627)
T ss_pred HhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CC
Confidence 000 0 01267889999996 899999999999998776 68
Q ss_pred CCEEEEEEEecCCCCCCC
Q 019498 218 RPILIEALTYRVGHHTTS 235 (340)
Q Consensus 218 ~P~lIe~~t~R~~gHs~~ 235 (340)
+|+||+++|-+.+|-..+
T Consensus 270 gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 270 GPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred CCEEEEEEecCCCCCChh
Confidence 999999999998876554
No 54
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.77 E-value=3.5e-18 Score=155.67 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=128.4
Q ss_pred cccccCCchHHHHHHHHHccC-CCcEEEc--cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccc
Q 019498 25 SFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT 100 (340)
Q Consensus 25 ~~~~~~~G~Ea~~~~~~~al~-~~D~~~~--~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~ 100 (340)
+...++.|---..+++-..++ +.|-++. .|.+.+|-+..|.. +.|.+++.. +++++++...+ ..-..
T Consensus 38 GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f 108 (270)
T PF13292_consen 38 GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRR--DRFHTLRQY-------GGLSGFPKRSESEYDAF 108 (270)
T ss_dssp STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTC--CCGGGTTST-------TS--SS--TTT-TT--S
T ss_pred CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcH--HHhchhhhc-------CCcCCCCCcccCCCCcc
Confidence 344555554444456666675 6886664 79999999999963 456777763 44555544332 23345
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCc------
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ------ 174 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~------ 174 (340)
..|+-+.++++|+|+|.|..+.+.+..||+++|||++.-|+.+||||-|+..+-++|+|+++|+.+|+.+....
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~ 188 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSK 188 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999887543210
Q ss_pred -cCc---------------------------c----c-hhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCE
Q 019498 175 -FRS---------------------------D----G-AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPI 220 (340)
Q Consensus 175 -~~~---------------------------~----~-~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~ 220 (340)
... . . ....++.+|+.++- +||||..++.++++.+.+ -++|+
T Consensus 189 l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPv 264 (270)
T PF13292_consen 189 LRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPV 264 (270)
T ss_dssp ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCE
Confidence 000 0 0 01356778999986 899999999999987764 68999
Q ss_pred EEEEEE
Q 019498 221 LIEALT 226 (340)
Q Consensus 221 lIe~~t 226 (340)
||+++|
T Consensus 265 llHV~T 270 (270)
T PF13292_consen 265 LLHVIT 270 (270)
T ss_dssp EEEEE-
T ss_pred EEEEeC
Confidence 999987
No 55
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.77 E-value=2.4e-18 Score=154.60 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=93.3
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE-EeCCcccccccc-----C-
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-----D- 173 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~-----~- 173 (340)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|+++++|+++|| +||+|++....+ .
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 3578999999999998874 78999999999999864 456999999999986665 555576532110 0
Q ss_pred -----------------ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 174 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 174 -----------------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
.....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0124689999999999999998 99999999998875 58999999999653
No 56
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.77 E-value=3.3e-18 Score=150.23 Aligned_cols=115 Identities=20% Similarity=0.289 Sum_probs=94.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 172 (340)
.|+||+++|.|+|++++. ++++|||++|||+|+. ...+|.+|+++++|+++||.|| +|++....+
T Consensus 47 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m--~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~ 120 (177)
T cd02010 47 LATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMM--NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDS 120 (177)
T ss_pred ChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHh--HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999885 7899999999999984 4577999999999987776555 576542110
Q ss_pred -CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 121 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 121 GVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred cCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11124689999999999999999 99999999999876 5899999999854
No 57
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.77 E-value=4.9e-18 Score=149.20 Aligned_cols=115 Identities=24% Similarity=0.305 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|++++. ++++|+|++|||+++++ +.| |.++.++++|+++||.||+ |++.....
T Consensus 50 ~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~ 123 (178)
T cd02014 50 LATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEF 123 (178)
T ss_pred CchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCce
Confidence 489999999999998874 78899999999999975 444 8999999999988887775 77532110
Q ss_pred -CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......|+.+++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 124 ~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 124 GVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 01134689999999999999999 88999888888765 5799999999854
No 58
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.76 E-value=2.8e-18 Score=147.87 Aligned_cols=114 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhC-CCCEEEEE-EeCCccccccccCccCcc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAISTPISDQFRSD 178 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lpvi~vv-~nN~~~~~~~~~~~~~~~ 178 (340)
..|+||+++|.|+|++++. + ++|||++|||+|++ ...+|.+++++ ++|+++|| +|+.|++...........
T Consensus 40 ~~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m--~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~ 112 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLM--NPGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNV 112 (157)
T ss_pred eecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHh--cccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCC
Confidence 3899999999999999985 3 78999999999974 34569999999 59997777 555577654222222357
Q ss_pred chhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 179 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 179 ~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
|+.++|++||+++.+|+ +++++.++++++++ .++|++|++.+.
T Consensus 113 d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 113 NLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred CHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 99999999999999998 89999999999886 579999999884
No 59
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.76 E-value=1.2e-17 Score=146.88 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=93.3
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEE-EEeCCccccccccCcc-Cc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFI-CRNNGWAISTPISDQF-RS 177 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~v-v~nN~~~~~~~~~~~~-~~ 177 (340)
..|+||+++|.|+|+++|. + ++|||++|||+|+++ ..++.++.++++ |+++| ++||+|++........ ..
T Consensus 40 ~~g~mG~~lp~AiGaala~----~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~ 112 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQ----P-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKK 112 (179)
T ss_pred cccchhhHHHHHHHHHhcC----C-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCC
Confidence 3799999999999999985 3 789999999999743 467999999996 77555 5777788764332222 25
Q ss_pred cchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
.|+.++|++||+++.+|+| +++++.++++++. ++|++||+.|.+..
T Consensus 113 ~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 113 TDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 6899999999999999997 7889988888775 58999999996544
No 60
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.75 E-value=1e-17 Score=147.54 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=91.9
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCC-ccccccccCcc-Cc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RS 177 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~-~~ 177 (340)
..|+||+++|.|+|+++|. +++|||++|||+|+++ .++|.+|+++++ |+++||.||+ |++........ ..
T Consensus 40 ~~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~ 112 (181)
T TIGR03846 40 MLGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRR 112 (181)
T ss_pred eccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCC
Confidence 3789999999999999884 6789999999999854 477999999995 9988886665 77654221111 25
Q ss_pred cchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 178 DGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.|+++.|++||+++.+ |+ +++++.++++ +++ .++|+|||+.+.+
T Consensus 113 ~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 113 TDLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 6899999999999998 87 8999999986 653 5799999999854
No 61
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.73 E-value=2.3e-17 Score=145.68 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE-EEeCCccccccccC------c
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISD------Q 174 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v-v~nN~~~~~~~~~~------~ 174 (340)
.|+||+++|.|+|++++. ++++|++++|||+|++ .++| |.+|+++++|+++| ++||+|++...... .
T Consensus 49 ~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (183)
T cd02005 49 WGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYND 122 (183)
T ss_pred hhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCccc
Confidence 589999999999999885 6789999999999975 3555 88999999987555 56666776432111 1
Q ss_pred cCccchhhhhhhcC----ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 175 FRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 175 ~~~~~~~~~a~a~G----~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
....|+.+.|++|| +++.+|+ +++++.++++++++ ..++|+|||+.+.|
T Consensus 123 ~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 123 IANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred CCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 12468999999999 7899998 89999999998885 24799999999854
No 62
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.73 E-value=1.5e-17 Score=142.36 Aligned_cols=114 Identities=28% Similarity=0.383 Sum_probs=92.2
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc----c---
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S--- 172 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~----~--- 172 (340)
..++||+++|.|+|+++| .|+++||+++|||+|.. ...+|.+|.++++|+++||.||+ |++.... .
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~--~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLM--SLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHH--HGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceee--ccchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 468999999999999997 47999999999999984 35679999999999977776665 5443211 0
Q ss_pred ---C---ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 173 ---D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 173 ---~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
. .....|+.+.|++||+++.+|+..|++++.+++++|++ .++|+||||
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 1 13457899999999999999996666999999999985 689999996
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=168.07 Aligned_cols=118 Identities=26% Similarity=0.294 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccc---------c
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~---------~ 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.|| +|++... .
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~--~~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQF--TLPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh--hHHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999885 7899999999999984 3455999999999998888777 6764321 1
Q ss_pred cCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 019498 172 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 231 (340)
Q Consensus 172 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 231 (340)
......+|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.++|+++
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 111235689999999999999998 99999999998875 5899999999999875
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.72 E-value=2.2e-17 Score=144.78 Aligned_cols=111 Identities=24% Similarity=0.212 Sum_probs=90.0
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC--------
Q 019498 103 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 173 (340)
Q Consensus 103 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~-------- 173 (340)
|.||+++|.|+|+++|. +++|||++|||+|++ ...+|.+|+++++|+++||.||+ |++......
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m--~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~ 123 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLH--DLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFE 123 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHH--hHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhh
Confidence 68999999999999884 678999999999984 45779999999999877766665 664221110
Q ss_pred -cc---CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 -QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 -~~---~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.. ..+|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 124 RLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 11 24689999999999999999 99999999998875 57999999976
No 65
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.71 E-value=5.5e-17 Score=165.13 Aligned_cols=116 Identities=28% Similarity=0.370 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccCcc-----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF----- 175 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~----- 175 (340)
.|+||+++|.|+|++++. |++.|||++|||+|+ +..++|.+|.++++|+++||.||+ |++....+...
T Consensus 407 ~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~ 480 (550)
T COG0028 407 LGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRY 480 (550)
T ss_pred CccccchHHHHHHHHhhC----CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCc
Confidence 579999999999998875 789999999999998 457779999999999988887776 55543222111
Q ss_pred ----Cccc-hhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 176 ----RSDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 176 ----~~~~-~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
.... |.++|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 481 SGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred ceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1123 9999999999999999 99999999999996 68999999999765
No 66
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.71 E-value=3.4e-17 Score=168.71 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc-----C--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D-- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-----~-- 173 (340)
.|+||+++|.|+|+++|. |+++||+++|||+|++. ..+|.+|++++||+++||.||+ |++....+ .
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 489999999999998885 78999999999999853 5679999999999877776665 76532110 0
Q ss_pred ---cc----------CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 174 ---QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 174 ---~~----------~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. ...||+++|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999999 9999999999998644345899999999954
No 67
>PRK07586 hypothetical protein; Validated
Probab=99.70 E-value=1e-16 Score=162.73 Aligned_cols=113 Identities=31% Similarity=0.249 Sum_probs=91.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc-----c---
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S--- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-----~--- 172 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|++ ...+|.+|.+++||+++||.|| +|++.... .
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 589999999999999885 7899999999999984 5678999999999987666555 57653210 0
Q ss_pred --------Cc-cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 173 --------DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 173 --------~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.. ....||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 00 123689999999999999999 89999999998875 57999999964
No 68
>PRK12474 hypothetical protein; Provisional
Probab=99.70 E-value=6.1e-17 Score=164.49 Aligned_cols=113 Identities=28% Similarity=0.239 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m--~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAY--TMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcc--hHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 589999999999999985 7899999999999984 45779999999999877776665 7653210
Q ss_pred cC--------ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 172 SD--------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 172 ~~--------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.. ..+..||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 00 0112589999999999999999 89999999999875 57999999964
No 69
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.70 E-value=1.4e-16 Score=163.51 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=109.1
Q ss_pred CCHHHHHHHhhcCCCCC----CCCCcc---cc-ccCCCC-CCcccc--CccccchhhHHHHHHHHhhhcCCCCeEEEEEC
Q 019498 65 FSMQEFANQCFGNKADY----GKGRQM---PI-HYGSNK-HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 133 (340)
Q Consensus 65 ~~~~~~~~~~~~~~~~~----~~G~~~---~~-h~~~~~-~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 133 (340)
+.+..++.++....++. +.++.. .. ++..+. .+++.+ .|+||+++|.|+|+++|. ++++|||++|
T Consensus 373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~G 448 (570)
T PRK06725 373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAK----EEELVICIAG 448 (570)
T ss_pred cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhc----CCCeEEEEEe
Confidence 55667777776654431 122211 11 222222 234432 489999999999998884 7899999999
Q ss_pred CcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc----------CccCccchhhhhhhcCceEEEEcCCCHHHH
Q 019498 134 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAI 202 (340)
Q Consensus 134 DG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~----------~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v 202 (340)
||+|++ ...+|.+|.+++||+++||.||+ |++....+ ......|+++++++||+++.+|+ +++++
T Consensus 449 DG~f~~--~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l 524 (570)
T PRK06725 449 DASFQM--NIQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEA 524 (570)
T ss_pred cchhhc--cHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHH
Confidence 999974 34569999999999988887776 54422110 11224689999999999999998 99999
Q ss_pred HHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 203 YSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 203 ~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.++++++.+ .++|+|||+.+.+
T Consensus 525 ~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 525 KQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHHHHh----CCCCEEEEEEeCC
Confidence 999988875 5899999999954
No 70
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.69 E-value=1.6e-16 Score=141.47 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcc-cCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~-~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------ 173 (340)
.++||+++|.|+|+++|. |+++||+++|||+ ++. ...+|.+|.++++|+++||.||+ |++......
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m--~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAI--GGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhc--cHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 378999999999998875 8999999999999 453 35669999999999987776664 665432110
Q ss_pred ----------ccCccchhhhhhhcCceEE---EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 174 ----------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 174 ----------~~~~~~~~~~a~a~G~~~~---~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
.....|+.+.|++||++++ +|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~--~~~el~~al~~al~----~~gp~vIev~~~ 184 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSG--DIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecC--CHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence 0113589999999999985 566 89999999999986 589999999863
No 71
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.69 E-value=1.6e-16 Score=163.13 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=114.5
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCcc-ccccCCC-CCCcccc--CccccchhhHHHHHHHHhhhcCCCCeEEEEECCccc
Q 019498 65 FSMQEFANQCFGNKADY---GKGRQM-PIHYGSN-KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 137 (340)
Q Consensus 65 ~~~~~~~~~~~~~~~~~---~~G~~~-~~h~~~~-~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~ 137 (340)
+.+..++.++....++. +..... ..++... ...++.+ .|+||+++|.|+|++++. |+++|||++|||+|
T Consensus 385 i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f 460 (569)
T PRK08327 385 ITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSF 460 (569)
T ss_pred cCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcce
Confidence 66667777766554431 111111 1122222 2334433 479999999999988774 88999999999999
Q ss_pred CcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccc----------------c-cCcc-CccchhhhhhhcCceEEEEcCCC
Q 019498 138 SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP----------------I-SDQF-RSDGAVVKGRAYGVRSIRVDGND 198 (340)
Q Consensus 138 ~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~----------------~-~~~~-~~~~~~~~a~a~G~~~~~VdG~d 198 (340)
+++...+++++|+++++|+++||.|| +|++... . .... ...|++++|++||+++.+|+ +
T Consensus 461 ~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~ 538 (569)
T PRK08327 461 IFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--D 538 (569)
T ss_pred eecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--C
Confidence 98755557999999999998888777 5765321 0 0111 34689999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 199 ALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 199 ~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
++++.++++++++..+++++|+|||+.+
T Consensus 539 ~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 539 PEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 9999999999998777778999999987
No 72
>PRK06154 hypothetical protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=163.29 Aligned_cols=118 Identities=24% Similarity=0.236 Sum_probs=95.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.||+ |++.....
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGM--TGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 579999999999998885 7899999999999984 45679999999999988776665 66432110
Q ss_pred CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||+++|++||+++.+|+ +++++.+++++|+++.+ .++|+|||+.+.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 01113689999999999999999 99999999999986432 3689999999854
No 73
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.69 E-value=4e-16 Score=158.99 Aligned_cols=113 Identities=29% Similarity=0.372 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
+|+||+++|.|+|++++. ++++|+|++|||+|+++ .++|++|.+++||+++||.||+ |++....
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999885 68899999999999965 4789999999999988887777 8763211
Q ss_pred -cCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 172 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 172 -~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.......|+.+++++||+++.+|+ ++.++.++++++.+ .++|+|||+.+
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 111235689999999999999999 88899888887764 68999999986
No 74
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.68 E-value=7.5e-16 Score=158.49 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=146.9
Q ss_pred cccccCCchHHHHHHHHHccC-CCcEEEc--cCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCccc
Q 019498 25 SFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT 100 (340)
Q Consensus 25 ~~~~~~~G~Ea~~~~~~~al~-~~D~~~~--~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~~~ 100 (340)
+..-++.|---.-+++-..++ +.|.++. .|....|-+..|.. +-|.. +. -+++++++...+ ..-..
T Consensus 117 GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f 186 (701)
T PLN02225 117 KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRW--SAIPS-RQ-------KNGISGVTSQLESEYDSF 186 (701)
T ss_pred CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCCh--hhcCc-cc-------cCCcCCCCCCCCCCCCCC
Confidence 345566775445566767776 6886654 79999999999973 33442 32 134444444332 23455
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccccc--------cc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP--------IS 172 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~--------~~ 172 (340)
..|+-+.++++|+|+|.|..+++.++.||+++|||++.-|+.+|+||-|+..+-|+|+|+++|+++|+.+ ..
T Consensus 187 ~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG 266 (701)
T PLN02225 187 GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASIS 266 (701)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999876 11
Q ss_pred Cc--------------------------cCc---------c----c-h---h-hhhhhcCceEEE-EcCCCHHHHHHHHH
Q 019498 173 DQ--------------------------FRS---------D----G-A---V-VKGRAYGVRSIR-VDGNDALAIYSAVH 207 (340)
Q Consensus 173 ~~--------------------------~~~---------~----~-~---~-~~a~a~G~~~~~-VdG~d~~~v~~a~~ 207 (340)
.. .+. . . + . .+++.+|+.++- |||||++++.++++
T Consensus 267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~ 346 (701)
T PLN02225 267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR 346 (701)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence 00 000 0 0 0 1 467889999986 89999999999999
Q ss_pred HHHHHhHccCCCEEEEEEEecCC
Q 019498 208 AAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 208 ~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
.+.+. ..++|+||+++|-+.+
T Consensus 347 ~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 347 EVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHcC--CCCCCEEEEEEecCCC
Confidence 88763 1249999999998776
No 75
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.68 E-value=1.3e-16 Score=164.58 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc-----C--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D-- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-----~-- 173 (340)
.|+||+++|.|+|+++|. +++.|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....+ .
T Consensus 418 ~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~ 491 (591)
T PRK11269 418 AGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQF--LIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYC 491 (591)
T ss_pred cccccchhhhHHhhhhhC----CCCcEEEEEccchhhc--CHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCcc
Confidence 579999999999998884 7889999999999985 34669999999999988887776 65432110 0
Q ss_pred -c------------cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 174 -Q------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 174 -~------------~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. ....||+++|++||+++.+|+ +++++.+++++|++...+.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 492 VQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 013689999999999999998 9999999999998644446899999999954
No 76
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.68 E-value=2.4e-16 Score=162.59 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. |+++||+++|||+|++ ...+|.+|++++||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQM--CIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999885 7899999999999985 44669999999999988887776 6543210
Q ss_pred cCc--cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ...+||+++|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 123689999999999999998 99999999999886 4799999999964
No 77
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.68 E-value=3.8e-16 Score=143.08 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=93.7
Q ss_pred ccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc----cc
Q 019498 98 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST----PI 171 (340)
Q Consensus 98 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~----~~ 171 (340)
.+...++||+++|.|+|++++ .|+++|||++|||++ +. ..++|.+|+++++|+++||.||+ |++.. ..
T Consensus 57 ~~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m--~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~ 130 (235)
T cd03376 57 AFENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADI--GFQALSGAAERGHDILYICYDNEAYMNTGIQRSGS 130 (235)
T ss_pred hhcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhh--HHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCC
Confidence 334457999999999998655 478999999999995 54 45679999999999988888776 55311 11
Q ss_pred c----C-------------ccCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 172 S----D-------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 172 ~----~-------------~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
. . .....|+.++|++||++++. +...+++++.++++++++ .++|+|||+.+.-.-
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~ 203 (235)
T cd03376 131 TPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPT 203 (235)
T ss_pred CCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 0 0 11336899999999999864 444599999999999986 579999999885433
No 78
>PRK08266 hypothetical protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=161.25 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 172 (340)
.|+||+++|.|+|++++. ++++|||++|||+|+++ .++|.+|.+++||+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 489999999999998774 78999999999999975 577999999999998877666 576532111
Q ss_pred --CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 019498 173 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 231 (340)
Q Consensus 173 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 231 (340)
.....+||.++|++||+++.+|+ +++++.++++++.+ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01124689999999999999999 89999999988875 5789999999987653
No 79
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.67 E-value=3.5e-16 Score=160.90 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc--------ccc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PIS 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~--------~~~ 172 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.||+ |++.. +..
T Consensus 407 ~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~ 480 (578)
T PRK06546 407 HGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDF 480 (578)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcc
Confidence 589999999999999885 7889999999999985 34569999999999988887775 55431 100
Q ss_pred -CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 173 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 173 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
......||.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 481 GTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPN 532 (578)
T ss_pred cccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 11235699999999999999999 99999999999886 58999999998543
No 80
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.67 E-value=5.3e-16 Score=158.97 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=94.9
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc-c------
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 172 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-~------ 172 (340)
..|+||+++|.|+|++++. ++++|||++|||+|++ ..++|.+|+++++|+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~--~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLM--NGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 3689999999999988874 7899999999999984 55789999999999988888877 6643211 0
Q ss_pred ---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 01124689999999999999999 89999999888875 5799999999954
No 81
>PRK05858 hypothetical protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=160.78 Aligned_cols=115 Identities=22% Similarity=0.144 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+|++++||+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~--~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGF--SLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcC--cHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 479999999999998885 7899999999999985 3466999999999987777666 465432100
Q ss_pred --CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||.+.|++||+.+.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135799999999999999999 99999999999986 5799999999954
No 82
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.67 E-value=2.8e-16 Score=162.77 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. |+++||+++|||+|++ ...+|.+|++++||+++||.||+ |++....+
T Consensus 433 ~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~ 506 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERY 506 (616)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 589999999999998885 7899999999999984 45679999999999988887775 55422100
Q ss_pred -C-cc--CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -D-QF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~-~~--~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. .. ...||+++|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 507 ~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 507 SASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 01 24689999999999999999 99999999998885 5789999999954
No 83
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.66 E-value=3.9e-16 Score=159.37 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc-----cC--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----SD-- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-----~~-- 173 (340)
.|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+|++++||+++||.|| +|++.... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLF--SSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhc--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999885 7889999999999984 4566999999999987776655 46653211 10
Q ss_pred --ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 174 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 174 --~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.....||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 1134789999999999999999 99999999999875 5799999999954
No 84
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.66 E-value=1.4e-15 Score=147.26 Aligned_cols=120 Identities=21% Similarity=0.162 Sum_probs=95.7
Q ss_pred cccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCC-ccccccccCccC
Q 019498 99 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFR 176 (340)
Q Consensus 99 ~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~-~~~~~~~~~~~~ 176 (340)
+...|+||+++|+|+|+|++. ++++|||+.|||+|. +...+|.+++++++ |+++||.||+ |+..........
T Consensus 217 f~~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~ 290 (361)
T TIGR03297 217 FLTVGSMGHASQIALGLALAR----PDQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQ 290 (361)
T ss_pred eEeechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCC
Confidence 334699999999999999885 688999999999997 44567999999997 8988877776 554332222223
Q ss_pred ccchhhhhhhcCc-eEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 177 SDGAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 177 ~~~~~~~a~a~G~-~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
..|+.+.|++||+ .+++|+ +.+++.++++++.+ .++|+|||+++....
T Consensus 291 ~~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 291 HLDFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 5789999999997 577777 99999999998864 579999999986543
No 85
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=5.4e-16 Score=159.45 Aligned_cols=118 Identities=23% Similarity=0.251 Sum_probs=95.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. |++.||+++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQM--NIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999885 7889999999999984 45779999999999987776665 5542211
Q ss_pred cCc--cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ...+||.++|++||+++.+|+ +++++.+++++|++.++ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 124689999999999999999 99999999999987433 3789999999964
No 86
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=6.3e-16 Score=158.96 Aligned_cols=116 Identities=23% Similarity=0.307 Sum_probs=94.2
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccc------c-c
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP------I-S 172 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~------~-~ 172 (340)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.|| +|++... . .
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSM--LMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhc--cHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 3589999999999998885 7899999999999985 4566999999999987766555 4765311 0 0
Q ss_pred --CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.....+||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 01234689999999999999999 99999999999875 5799999999854
No 87
>PRK07064 hypothetical protein; Provisional
Probab=99.66 E-value=4.5e-16 Score=159.00 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=93.8
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc-------
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 172 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~------- 172 (340)
..|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+|.+++||+++||.|| +|++....+
T Consensus 403 ~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~ 476 (544)
T PRK07064 403 LGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLML--NLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGR 476 (544)
T ss_pred CCCccccccchhhhhhhhC----cCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCc
Confidence 3578999999999999884 7889999999999985 4567999999999987776555 476532110
Q ss_pred ---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 173 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 173 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
.....+||.++|++||+++.+|+ +++++.++++++++ .++|+|||+.++
T Consensus 477 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 477 RYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 11234689999999999999999 89999999998875 579999999985
No 88
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.66 E-value=1.3e-15 Score=156.66 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=110.0
Q ss_pred CCHHHHHHHhhcCCCCC----CCCCcc----ccccCCCC-CCcccc--CccccchhhHHHHHHHHhhhcCCCCeEEEEEC
Q 019498 65 FSMQEFANQCFGNKADY----GKGRQM----PIHYGSNK-HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 133 (340)
Q Consensus 65 ~~~~~~~~~~~~~~~~~----~~G~~~----~~h~~~~~-~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 133 (340)
+.+..++.++....+.. +..+.. ..++.... ..++.+ .|+||+++|.|+|+++|. ++++|||++|
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~Vv~i~G 456 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVVAYAG 456 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhC----CCCcEEEEEc
Confidence 56677777776654432 121211 11222222 334433 479999999999998884 7899999999
Q ss_pred CcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc-----cC-----ccCc-cchhhhhhhcCceEEEEcCCCHHH
Q 019498 134 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----SD-----QFRS-DGAVVKGRAYGVRSIRVDGNDALA 201 (340)
Q Consensus 134 DG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-----~~-----~~~~-~~~~~~a~a~G~~~~~VdG~d~~~ 201 (340)
||+|++. ..+|.+|++++||+++||.|| +|++.... .. .... .||.++|++||+++.+|+ ++++
T Consensus 457 DG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~e 532 (579)
T TIGR03457 457 DGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPED 532 (579)
T ss_pred chHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999853 467999999999987777655 46653211 00 1122 489999999999999999 9999
Q ss_pred HHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 202 IYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 202 v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
+.+++++|++.. +.++|+|||+.+.+
T Consensus 533 l~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 533 VGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred HHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 999999998643 24689999999954
No 89
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.65 E-value=8.7e-16 Score=158.04 Aligned_cols=115 Identities=28% Similarity=0.371 Sum_probs=93.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|+ +..++|++|+++++|+++||.||+ |++....+
T Consensus 436 ~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhhC----CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 478999999999998774 788999999999997 567889999999999988888886 33321100
Q ss_pred --CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 --~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||.++|++||+++.+|+ +++++.++++++.+ .++|+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 01124689999999999999999 89999999988875 5799999999854
No 90
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.65 E-value=1.2e-15 Score=156.76 Aligned_cols=115 Identities=26% Similarity=0.339 Sum_probs=93.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc-----c---
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-----S--- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~-----~--- 172 (340)
.|+||+++|.|+|++++. ++++||+++|||+|++ ...+|.+|+++++|+++||.||+ |++.... .
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m--~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQM--TLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhh--hHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 479999999999999885 7889999999999985 33459999999999877766654 6653211 0
Q ss_pred ---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11134689999999999999999 88999999888875 5799999999964
No 91
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=9.4e-16 Score=158.05 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccc---------c
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++... .
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m--~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQM--CIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhc--CHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 479999999999999885 7899999999999985 45779999999999988877776 543211 1
Q ss_pred cCc-c-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... . ..+||+++|++||+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 111 1 24689999999999999999 999999999998862 3689999999954
No 92
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=9.6e-16 Score=157.52 Aligned_cols=116 Identities=24% Similarity=0.301 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQM--NIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhc--cHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999999885 7899999999999985 45679999999999977776665 5543211
Q ss_pred cCc-c-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... . ..+||+++|++||+++.+|+ +++++.++++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 011 1 24689999999999999999 999999999998852 3789999999964
No 93
>PLN02573 pyruvate decarboxylase
Probab=99.65 E-value=7e-16 Score=158.62 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=93.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc----CccC
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQFR 176 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~----~~~~ 176 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|+ +...+|.+|++++||+++||.|| +|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999885 789999999999998 45577999999999987776555 477543211 1123
Q ss_pred ccchhhhhhhcC-----ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 177 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 177 ~~~~~~~a~a~G-----~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
..||.++|++|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999995 8999999 899999999998742 2478999999883
No 94
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=1.1e-15 Score=157.27 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=94.5
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc---------cc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.++++|+++||.||+ |++.. ..
T Consensus 420 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~ 493 (574)
T PRK06882 420 AGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRH 493 (574)
T ss_pred cccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcc
Confidence 578999999999999885 68899999999999864 4779999999999988887776 44321 00
Q ss_pred cCc--cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ...+|+.++|++||+++.+|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 494 SQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 111 124689999999999999999 899999999988862 3789999999965
No 95
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.64 E-value=1.3e-15 Score=156.73 Aligned_cols=116 Identities=25% Similarity=0.273 Sum_probs=94.1
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~ 495 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQM--NIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRH 495 (574)
T ss_pred cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCce
Confidence 479999999999999885 7899999999999985 45679999999999977776664 6653211
Q ss_pred cCc--cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ....||.++|++||+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 496 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 496 SHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 123689999999999999999 999999999988852 2799999999954
No 96
>PRK08611 pyruvate oxidase; Provisional
Probab=99.64 E-value=1.1e-15 Score=157.14 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 171 (340)
.|+||+++|.|+|++++. ++++||+++|||+|++ ...+|.+|++++||+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m--~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSM--VMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhh--hHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 489999999999998875 7899999999999985 4577999999999986666555 56653110
Q ss_pred cCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.......||+++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999998 99999999998875 5899999999965
No 97
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.64 E-value=1.2e-15 Score=156.06 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhhhcCC-CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-------- 171 (340)
.|+||+++|.|+|++++. + +++|||++|||+|++ ...+|.+|.+++||+++||.|| +|++....
T Consensus 395 ~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~--~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~ 468 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTM--TMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPE 468 (549)
T ss_pred cchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhh--hHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCc
Confidence 589999999999998875 5 789999999999984 5577999999999987766555 56643110
Q ss_pred -cCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 -~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......+||.+.|++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 469 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 469 WGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011124689999999999999999 99999999999875 5789999999953
No 98
>PRK08617 acetolactate synthase; Reviewed
Probab=99.64 E-value=8e-16 Score=157.46 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc-----cC--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----SD-- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-----~~-- 173 (340)
.|+||+++|.|+|++++. ++++|||++|||+|++ ...+|.+|++++||+++||.|| .|++.... ..
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLF--SAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhh--hHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999998875 7899999999999984 4567999999999997776555 46543211 00
Q ss_pred --ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 174 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 174 --~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.....||.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999999 99999999998875 5789999999965
No 99
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.64 E-value=1.7e-15 Score=155.11 Aligned_cols=114 Identities=19% Similarity=0.161 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccc------c--ccc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~------~--~~~ 172 (340)
.|+||+++|.|+|++++ ++++||+++|||+|++ ...+|.+|++++||+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m--~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGF--SGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhcc--cHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 3688999999999985 44669999999999988888886 3111 0 000
Q ss_pred Cc-cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. ....||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999999 99999999998875 5799999999853
No 100
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.64 E-value=7.7e-16 Score=157.18 Aligned_cols=114 Identities=21% Similarity=0.222 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc------Cc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------DQ 174 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~------~~ 174 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|+ +...+|.+|+++++|+++||.|| +|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 489999999999998874 789999999999998 45677999999999986666555 576532111 12
Q ss_pred cCccchhhhhhhcCce----EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 175 FRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 175 ~~~~~~~~~a~a~G~~----~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
....||.++|++||++ +.+|+ +++++.++++++++ .++|+|||+.+.
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999996 89998 89999999998875 579999999883
No 101
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.63 E-value=1.9e-15 Score=155.68 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=94.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccc---------c
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 171 (340)
.|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+|++++||+++||.||+ |++... .
T Consensus 429 ~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~ 502 (585)
T CHL00099 429 LGTMGYGLPAAIGAQIAH----PNELVICISGDASFQM--NLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERY 502 (585)
T ss_pred ccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 589999999999999885 6889999999999984 45779999999999988887776 443211 0
Q ss_pred cC---ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. .....|+.+++++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 503 SHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 00 1124689999999999999999 89999999988876 5799999999953
No 102
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.63 E-value=1.8e-15 Score=155.67 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE-EeCCccccccc-----c---
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-----S--- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~-----~--- 172 (340)
.|+||+++|.|+|++++. ++++||+++|||+|++ ...+|.++++++||+++|| +||+|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m--~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSM--TMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHh--hHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 489999999999998875 7899999999999985 4567999999999987775 55557753210 0
Q ss_pred -CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||+++|++||+++.+|+ +.+++.++++++++ . +.++|+|||+.+..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 01234689999999999999998 89999999999884 2 35799999999955
No 103
>PRK08322 acetolactate synthase; Reviewed
Probab=99.63 E-value=1.8e-15 Score=154.71 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe-CCccccccc-----c---
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPI-----S--- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n-N~~~~~~~~-----~--- 172 (340)
.|+||+++|.|+|++++. |+++||+++|||+|++ ...+|.+|.++++|+++||.| ++|++.... .
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMM--NSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhc--cHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 479999999999998885 7899999999999984 456699999999998666655 457653210 0
Q ss_pred -CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.....+||++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11124689999999999999998 99999999998875 5799999999854
No 104
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.63 E-value=2.4e-15 Score=154.34 Aligned_cols=116 Identities=25% Similarity=0.288 Sum_probs=93.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+++||.||+ |++....+
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-I-QELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-H-HHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999885 68899999999999863 3 459999999999987776665 55432110
Q ss_pred ---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 173 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 173 ---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
......|+.++|++||+.+.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCc
Confidence 11123689999999999999999 89999999998875 57999999999763
No 105
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.63 E-value=1.1e-15 Score=140.28 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=90.6
Q ss_pred cCccccchhhHHHHHHHHh-hhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC----
Q 019498 101 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 173 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~-k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~---- 173 (340)
..|+||+++|.|+|++++. +...++++|||++|||++. .| +. ++.++.++++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998771 1113789999999999985 34 33 47778889999988887775 554321110
Q ss_pred ------------ccCccchhhhhhhcCceEEE---EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 174 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 174 ------------~~~~~~~~~~a~a~G~~~~~---VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
.....|+++.|++||+++++ |+ +++++.+++++|++ +.++|+||++.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 12346899999999999986 77 89999999998884 2589999999873
No 106
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=155.69 Aligned_cols=116 Identities=24% Similarity=0.259 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhC-----CCCEEEEEEeCC-ccccccc----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI---- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-----~Lpvi~vv~nN~-~~~~~~~---- 171 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|++.. ..+|.+|+++ +||+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 479999999999999885 789999999999997431 3669999999 899988887775 6542110
Q ss_pred -----c---CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 -----S---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 -----~---~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. ...+..||+++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 01134679999999999999999 99999999999886 5899999999954
No 107
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.63 E-value=3e-15 Score=153.60 Aligned_cols=115 Identities=25% Similarity=0.336 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccc---------c
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~---------~ 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|.++++|+++||.||+ |++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQM--NSQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhc--cHHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 379999999999999885 7889999999999985 35679999999999877776664 654321 1
Q ss_pred cCc--cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~--~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ....||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 134689999999999999999 99999999999985 5799999999954
No 108
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.63 E-value=2.4e-15 Score=154.40 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
.|+||+++|.|+|+++|. ++++|+|++|||+|++. +. +|.+|.++++|+++||.||+ |++....+
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~-eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQ-EMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HH-HHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 479999999999999885 68899999999999963 44 49999999999988887776 77643211
Q ss_pred --Ccc-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 --~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... ...||+++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011 24689999999999999999 89999999998875 5799999999954
No 109
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.62 E-value=1.9e-15 Score=155.88 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc-----c---
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S--- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~-----~--- 172 (340)
.|+||+++|.|+|++++. ++++||+++|||+|+++ ..+|.+|+++++|+++||.|| +|++.... .
T Consensus 434 ~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 507 (588)
T PRK07525 434 FGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRF 507 (588)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCc
Confidence 589999999999998885 78899999999999864 455999999999997777555 67643210 0
Q ss_pred -C-cc-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 173 -D-QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 173 -~-~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
. .. ...||.++|++||+++.+|+ +++++.++++++++.. +.++|+|||+.+.+-.
T Consensus 508 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 508 VGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 0 11 23689999999999999998 9999999999998743 2358999999996543
No 110
>PLN02470 acetolactate synthase
Probab=99.62 E-value=3.3e-15 Score=153.96 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. |+++|||++|||+|++ ...+|.+|.+++||+++||.||+ |++....
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIM--NIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 489999999999999885 7889999999999985 45679999999999877776664 5543110
Q ss_pred cCc-cC--------ccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ-FR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~-~~--------~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... .. .+||+++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 00 2689999999999999999 99999999999886 5799999999954
No 111
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.62 E-value=2.8e-15 Score=154.10 Aligned_cols=115 Identities=23% Similarity=0.270 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc-----C--
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D-- 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-----~-- 173 (340)
.|+||+++|.|+|+++|. ++++||+++|||+|++ ...+|.+|.+++||+++||.||+ |++....+ .
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLM--TGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRI 493 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhc--chHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 589999999999999885 7889999999999985 34679999999999877776665 66532110 0
Q ss_pred ---cc-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 174 ---QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 174 ---~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. ...||++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred ccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 11 24689999999999999998 99999999998875 5799999999965
No 112
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.62 E-value=2.3e-15 Score=140.60 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=88.2
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC--------
Q 019498 103 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 173 (340)
Q Consensus 103 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~-------- 173 (340)
+++|.++|.|+|+++|. |++.||++.|||+++. +-..++.+|+++++|+++||.||+ |++...+..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999998885 8999999999999853 223447779999999988877665 565321110
Q ss_pred --------ccCccchhhhhhhcCceEE---EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 174 --------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 174 --------~~~~~~~~~~a~a~G~~~~---~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
..+..|++++|++||+.++ +|+ +++++.+++++|++ .+||+|||+.+.
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0122377999999999985 676 99999999999986 589999999773
No 113
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.62 E-value=3.2e-15 Score=152.94 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|+++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~--~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMM--NVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999998885 7899999999999985 4566999999999987776555 56543210
Q ss_pred cCc-c-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... . ...||+++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 1 24689999999999999998 99999999998875 5799999999965
No 114
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.61 E-value=2.9e-15 Score=153.55 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc---------cc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------PI 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~---------~~ 171 (340)
.|+||+++|.|+|++++. ++++||+++|||+|++. ..+|.+|.+++||+++||.||+ |++.. +.
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 479999999999998874 78899999999999863 3469999999999988887776 44321 00
Q ss_pred --cCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 --~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011124689999999999999999 89999999998886 4799999999964
No 115
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.61 E-value=6.9e-15 Score=138.91 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=98.0
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc--------
Q 019498 103 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 172 (340)
Q Consensus 103 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~-------- 172 (340)
|++|.++|+|+|+++|. |++.|||+.|||++ +.| ..+|.+|+++++|+++||.||+ |++...+.
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 67899999999998885 88999999999997 454 4569999999999988887775 55533211
Q ss_pred --------CccCccchhhhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCC
Q 019498 173 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 243 (340)
Q Consensus 173 --------~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~ 243 (340)
......|+..+|+++|+.++ ++.-.++.++.+++++|++ .+||+|||+.+.-...+ ......++
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~---~~~~~~~~ 216 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFN---GRNTSTKS 216 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC---CcCCcccC
Confidence 00123589999999999986 2233399999999999886 58999999876322111 11223456
Q ss_pred hHHHHHHH
Q 019498 244 VDEIEWWR 251 (340)
Q Consensus 244 ~~e~~~~~ 251 (340)
+.++.+|-
T Consensus 217 ~~~~~~~~ 224 (301)
T PRK05778 217 PAYMREYY 224 (301)
T ss_pred HHHHHHHH
Confidence 66666663
No 116
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.61 E-value=5e-15 Score=152.14 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=92.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-c--ccc----c--ccc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIS----T--PIS 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~--~~~----~--~~~ 172 (340)
.|+||+++|.|+|+++| ++++||+++|||+|++ ...+|.+|+++++|+++||.||+ | ... . ...
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGF--SGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCccccc--cHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 48999999999999987 2788999999999985 44669999999999999988887 2 110 0 000
Q ss_pred -Cc-cCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 -DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 -~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. .+..||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999999 99999999999875 5799999999853
No 117
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.60 E-value=3.3e-15 Score=152.41 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=90.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Ccccccccc-----Ccc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQF 175 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~-----~~~ 175 (340)
.|+||+++|.|+|+++|. + +++|+++|||+|+ +...+|.+|.+++||+++||.|| +|++....+ ...
T Consensus 402 ~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 489999999999999884 3 4568899999998 45677999999999987776655 576543211 112
Q ss_pred CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 176 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 176 ~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
...||+++|++||+++.+|+ +++++.+++++|++. .++|+|||+.+
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i 520 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAML 520 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEEC
Confidence 35789999999999999999 999999999998852 35689999987
No 118
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.59 E-value=4.3e-15 Score=152.52 Aligned_cols=114 Identities=24% Similarity=0.370 Sum_probs=91.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-Cccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. |+++||+++|||+|++ ...+|.+|.++++|+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQM--TNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 489999999999998875 7899999999999985 4567999999999987776555 46653211
Q ss_pred c-Ccc-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. ... ..+||+++|++||+.+.+|+ +++++.++++ +.+ .++|+|||+.+.+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 111 34689999999999999999 8999999886 332 4799999999965
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.59 E-value=9.2e-15 Score=150.70 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=93.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999999884 77899999999999854 4669999999999977776665 6543211
Q ss_pred cCc-c-CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
... . ...|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 111 1 24689999999999999998 99999999998875 5799999999854
No 120
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.58 E-value=4.6e-15 Score=153.65 Aligned_cols=116 Identities=23% Similarity=0.330 Sum_probs=93.2
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc---------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 171 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~--------- 171 (340)
.|+||+++|.|+|++++. +++.|+|++|||+|++ ...+|.+|++++||+++||.||+ |++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQM--TNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhc--cHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 378999999999998885 7899999999999984 45779999999999877766554 6643210
Q ss_pred cC-cc-----CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 SD-QF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 ~~-~~-----~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
.. .. ..+||+++|++||+++.+|+ +++++.+++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 00 00 12689999999999999999 999999999999863 3689999999954
No 121
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.56 E-value=2e-14 Score=134.26 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=89.8
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc---------
Q 019498 103 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS--------- 172 (340)
Q Consensus 103 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~--------- 172 (340)
+.+|.++|.|+|+++| +|++.||++.|||++.. .-..+|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 4589999999999777 47899999999999862 114569999999999988887775 55432110
Q ss_pred -------CccCccchhhhhhhcCceEEEE-cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 173 -------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 173 -------~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
......|+.++|+++|++++.. .-.++.++.+++++|++ .+||+|||+.+.
T Consensus 135 ~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 135 TPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred cccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 0112358999999999998872 23499999999999996 589999999873
No 122
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.56 E-value=8.3e-14 Score=130.57 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=85.6
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC-------
Q 019498 103 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 173 (340)
Q Consensus 103 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------- 173 (340)
+.+|.++|+|+|+++|. |++.|||++|||++. +| ...|.+|+++++|+++||.||+ |++...+..
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 45799999999998874 899999999999973 44 4569999999999988887775 554331110
Q ss_pred -c--------c--CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 -Q--------F--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 -~--------~--~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
. . ..+++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 12346678888888777622 389999999999986 58999999976
No 123
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.54 E-value=1.4e-14 Score=148.88 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=90.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccc----c----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~----~---- 172 (340)
.++||+++|.|+|+++| ++++|||++|||+|++. ..+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 47889999999999853 3569999999999877776665 5532111 0
Q ss_pred ----CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 173 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 173 ----~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
......||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 01134689999999999999998 99999999999875 57999999987
No 124
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.53 E-value=9.1e-14 Score=129.90 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=90.6
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCc-ccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 173 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~------ 173 (340)
.+++|.++|+|+|+++|. |++.||+++||| +++.| ..+|.+|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 577899999999998884 789999999999 68866 4559999999999988887775 555431110
Q ss_pred -c---c------CccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 -Q---F------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 -~---~------~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
. . ...|+.++|+++|++.+. ....++.++.+++++|++ .+||+||++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 012899999999998664 455699999999999986 58999999976
No 125
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.52 E-value=8.8e-14 Score=130.73 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=88.4
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcc-cCcchHHHHHHHHHhCCCCEEEEEEeCC-cccccccc-------
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~-~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~------- 172 (340)
.+++|.++|+|+|+++|. |++.||+++|||+ ++.| ..+|.+|.++++|+++||.||+ |++...+.
T Consensus 68 ~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 368899999999998874 8999999999995 7765 3459999999999987776664 65532111
Q ss_pred Cc---------cCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 173 DQ---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 173 ~~---------~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.. ....++.++|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 0124788999999998763 344489999999999986 58999999976
No 126
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.48 E-value=1.6e-12 Score=130.72 Aligned_cols=218 Identities=19% Similarity=0.190 Sum_probs=154.5
Q ss_pred CcEEEc-cCccHHHH---HHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCC-CCc-cccCccccchhhHHHHHHHHhh
Q 019498 47 DDFVVP-QYREPGVL---LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNY-FTVSSTIATQLPHAVGAAYALK 120 (340)
Q Consensus 47 ~D~~~~-~yR~~~~~---l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~-~~~-~~~~g~lG~~lp~A~G~A~a~k 120 (340)
.|.|+- .|-..+.. ..-|..-++.|..|++.. .|.+++++|.+.. +.+ .+++++||-|.-.|+=.|.-.|
T Consensus 134 gDlV~~qgHaSPg~yArafLeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~k 209 (887)
T COG2609 134 GDLVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLK 209 (887)
T ss_pred CceEEEecCCCchHHHHHHHhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHH
Confidence 387664 35443332 345766778888888753 3667787766543 333 4568999999999999998888
Q ss_pred hc-------CCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccC-ccchhhhhhhcCceE
Q 019498 121 MD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRS 191 (340)
Q Consensus 121 ~~-------~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~ 191 (340)
+. .++++|+||+|||++.|+...+++.+|++.+| |++|||+.|....+.|...... ...+...+++.||.+
T Consensus 210 YL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~V 289 (887)
T COG2609 210 YLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNV 289 (887)
T ss_pred HHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceE
Confidence 63 46789999999999999999999999999999 9999999999888777653211 123555666677776
Q ss_pred EE---------------------------------------------------------------------EcCCCHHHH
Q 019498 192 IR---------------------------------------------------------------------VDGNDALAI 202 (340)
Q Consensus 192 ~~---------------------------------------------------------------------VdG~d~~~v 202 (340)
++ --|||+..|
T Consensus 290 ikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki 369 (887)
T COG2609 290 IKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKV 369 (887)
T ss_pred EEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHH
Confidence 22 238999999
Q ss_pred HHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHH
Q 019498 203 YSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 277 (340)
Q Consensus 203 ~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~ 277 (340)
++|+++|.++ .++|+||.++|.+.+|-...- +.-......+.+ ..|-|+.+|+++-= .++++|+++
T Consensus 370 ~aA~~~A~~~---kg~PtvilA~TIKGyglg~~~--eg~n~aHq~kkm--~~~~l~~~Rdr~~i--pvsd~e~e~ 435 (887)
T COG2609 370 YAAFKKAQEH---KGRPTVILAKTIKGYGLGEAA--EGKNIAHQVKKM--TPDQLKEFRDRFGI--PVSDAELEE 435 (887)
T ss_pred HHHHHHHhcC---CCCceEEEEeeeccccCchhh--cccchhhhhhcC--CHHHHHHHHhhcCC--CCchhhhhc
Confidence 9999999874 458999999999988754221 111222233222 23567888887622 257777766
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.45 E-value=6.9e-13 Score=136.95 Aligned_cols=120 Identities=16% Similarity=0.069 Sum_probs=91.3
Q ss_pred ccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-CccccccccC---
Q 019498 98 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD--- 173 (340)
Q Consensus 98 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~~~~~~~~~~--- 173 (340)
+..+.++||+++|.|+|+++|. ++++||+++|||+|.... ..+|.+|.++++|+++||.|| .|++...+..
T Consensus 398 ~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~ 472 (595)
T TIGR03336 398 TVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTG-IPGLINAVYNKANITVVILDNRITAMTGHQPNPGT 472 (595)
T ss_pred ccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCC
Confidence 3344688999999999998874 789999999999997421 356999999999997777666 5666432211
Q ss_pred -------ccCccchhhhhhhcCceEEEEc-CCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 174 -------QFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 174 -------~~~~~~~~~~a~a~G~~~~~Vd-G~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.....|+.+.+++||+++.+|. -.+.+++.++++++++ .++|++|++..
T Consensus 473 ~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 473 GVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 0124689999999999999986 3355667888888875 57999999855
No 128
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.38 E-value=1.5e-12 Score=127.81 Aligned_cols=118 Identities=24% Similarity=0.291 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCcc-----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF----- 175 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~----- 175 (340)
+|++|+.+|+|+|+++|. +++++|.|+|||++| +..+++.+..+|+| |+|||++|++|.+........
T Consensus 410 WGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNd 483 (557)
T COG3961 410 WGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYND 483 (557)
T ss_pred hhhcccccHhhhhhhhcC----CCccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCccc
Confidence 799999999999999997 689999999999999 46677999999999 899999999998865443311
Q ss_pred -CccchhhhhhhcCceEEEE--cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 176 -RSDGAVVKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 176 -~~~~~~~~a~a~G~~~~~V--dG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
..-|+.++.++||..-... .-...+++..++..+.. ..+++.+|||++.+
T Consensus 484 I~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 484 IQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred ccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 1357888889998654332 12256677777777665 36689999999854
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.37 E-value=1.5e-12 Score=147.34 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=91.9
Q ss_pred cCccccc--hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhC--CCCEEEEEEeCC-ccccccc----
Q 019498 101 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI---- 171 (340)
Q Consensus 101 ~~g~lG~--~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~--~Lpvi~vv~nN~-~~~~~~~---- 171 (340)
+.|++|. ++|.|+|++++. +++|+|++|||+|+ +...+|.+|+++ ++|+++||.||+ |++....
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~ 829 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAK 829 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCC
Confidence 4588998 599999999874 67899999999998 456779999984 999977776665 5543210
Q ss_pred --c-----C---ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 172 --S-----D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 172 --~-----~---~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. . .....|+.++|++||+++.+|+ +++++.++++++.+ .++|+||||.|.|
T Consensus 830 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 830 RTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 0 0 0124689999999999999999 99999999988875 5899999999954
No 130
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.34 E-value=6.9e-11 Score=111.33 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=99.9
Q ss_pred CccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccC-
Q 019498 97 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 173 (340)
Q Consensus 97 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~- 173 (340)
+.....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..|. ++|.-|...+.|+++||.||. |+.++-+..
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~--~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF--QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH--HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34445778999999999999998876777899999999998 4553 779999999999999998886 333211110
Q ss_pred --------------------ccCccchhhhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCC
Q 019498 174 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 230 (340)
Q Consensus 174 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~ 230 (340)
.....|+...+.++|++.+ +++-.|+.++.+++++|.+ .+||.||++.+.-..
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPT 214 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 1123578899999999877 5677799999999999986 589999999874443
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.33 E-value=1.3e-11 Score=120.11 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=91.4
Q ss_pred ccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC-C-cccccccc-----
Q 019498 100 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPIS----- 172 (340)
Q Consensus 100 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN-~-~~~~~~~~----- 172 (340)
++.|+||-|++.|+++|++. |++.|+|+.||++|.- ..-++.++.+|+|||+.||.|| + |+.+....
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGf--SaME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGF--SAMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCc--chhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 34688888888888877775 9999999999999963 3345999999999998888765 3 33322111
Q ss_pred ----C------ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 ----D------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ----~------~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
. ...+.++.+.+++||..++.|+ .++++..+++++.. .+++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 1 1124578899999999999999 99999999998886 46799999998743
No 132
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.30 E-value=4.3e-12 Score=121.52 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=111.7
Q ss_pred CCHHHHHHHhhcCCCCC------CCC-Ccccc----ccCCCCCCcccc---CccccchhhHHHHHHHHhhhcCCCCeEEE
Q 019498 65 FSMQEFANQCFGNKADY------GKG-RQMPI----HYGSNKHNYFTV---SSTIATQLPHAVGAAYALKMDRKDACAVT 130 (340)
Q Consensus 65 ~~~~~~~~~~~~~~~~~------~~G-~~~~~----h~~~~~~~~~~~---~g~lG~~lp~A~G~A~a~k~~~~~~~vv~ 130 (340)
+.|+.++..+.....+. +.| ++.+| |+.-+++.-+-+ -|+||.|||+|+|+..|. |+.+||-
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~----P~~iViD 547 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN----PDAIVID 547 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccC----cccEEEe
Confidence 55677777665444331 223 23444 444444443333 369999999999998774 9999999
Q ss_pred EECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc-cccccccC----------ccCccchhhhhhhcCceEEEEcCCCH
Q 019498 131 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 131 ~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~----------~~~~~~~~~~a~a~G~~~~~VdG~d~ 199 (340)
+-||++|.+ ...+|.++.+.++||-+++.||.- ++-+..+. ..-+++|.++|.++|+++.+|. .-
T Consensus 548 IDGDaSF~M--t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~--K~ 623 (675)
T KOG4166|consen 548 IDGDASFIM--TVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVT--KK 623 (675)
T ss_pred ccCCceeee--ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheee--hH
Confidence 999999984 455699999999999877777753 33222111 1135899999999999999999 78
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
+++.+.+++.+. .+||+|+|+.+...
T Consensus 624 edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 624 EDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred HHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 899999988875 79999999988543
No 133
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.26 E-value=1.2e-11 Score=117.03 Aligned_cols=199 Identities=22% Similarity=0.238 Sum_probs=118.1
Q ss_pred cccccCCchHHHHHHHHHccCC--CcEEEccCccHHHHH------HcC----------CCHHHHHHHhhcCCCCCCCCCc
Q 019498 25 SFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGVLL------WRG----------FSMQEFANQCFGNKADYGKGRQ 86 (340)
Q Consensus 25 ~~~~~~~G~Ea~~~~~~~al~~--~D~~~~~yR~~~~~l------~~G----------~~~~~~~~~~~~~~~~~~~G~~ 86 (340)
|.|-++.|+.-+.+|+...++. .|.++.+--||+... .-| .+ ++=|..|+..- +.-++
T Consensus 48 GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d-~~Gl~~L~~~F---S~PgG 123 (379)
T PF09364_consen 48 GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQD-EEGLRRLFRQF---SFPGG 123 (379)
T ss_dssp S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SS-HHHHHHHHHHB---TSTTS
T ss_pred cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCC-HHHHHHHHHhC---CCCCC
Confidence 6777888999999999888864 567776667774211 111 11 11122222221 12246
Q ss_pred cccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC----CEEEEEEe
Q 019498 87 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIFICRN 162 (340)
Q Consensus 87 ~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L----pvi~vv~n 162 (340)
+++|.+...+|.+.-.|-||++++.|.|+++- +|+.+|+|++|||++.+|-...+...-+-++- .|+-|+.=
T Consensus 124 ipSH~~p~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhL 199 (379)
T PF09364_consen 124 IPSHVSPETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHL 199 (379)
T ss_dssp B-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE
T ss_pred CccccCcCCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEe
Confidence 88898888889898899999999999998764 69999999999999999865444332222332 37888888
Q ss_pred CCccccccccC-ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHH----Hh-------HccC---CCE--EEEEE
Q 019498 163 NGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE----MA-------IGEG---RPI--LIEAL 225 (340)
Q Consensus 163 N~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~----~~-------r~~~---~P~--lIe~~ 225 (340)
|+|.|+.++-- ..+...+.+.+++||+..+.|+|.|+.++...+..+++ .+ |+++ +|. +|.++
T Consensus 200 NG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlR 279 (379)
T PF09364_consen 200 NGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLR 279 (379)
T ss_dssp -SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE
T ss_pred cCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEE
Confidence 99999977642 23455799999999999999999999888776655432 22 3322 343 67788
Q ss_pred EecCCC
Q 019498 226 TYRVGH 231 (340)
Q Consensus 226 t~R~~g 231 (340)
|.+.++
T Consensus 280 tPKGWt 285 (379)
T PF09364_consen 280 TPKGWT 285 (379)
T ss_dssp --TTTT
T ss_pred CCcccC
Confidence 877654
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.15 E-value=1e-10 Score=109.42 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=104.8
Q ss_pred cCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcc---------ccccc
Q 019498 101 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA---------ISTPI 171 (340)
Q Consensus 101 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~---------~~~~~ 171 (340)
..|++|+.+|.|+|...| .|++.++++.||-.|+ ...|+|...++++||.|.|+.||.|- ++...
T Consensus 417 qagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy 490 (592)
T COG3960 417 QAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (592)
T ss_pred ccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccc
Confidence 357999999999998655 5899999999999998 67899999999999999999999871 11111
Q ss_pred cCcc------------CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 172 SDQF------------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 172 ~~~~------------~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
..+. ...|..+.++++|++.++|- +++++..++.+|..-+.+..-|+++|+...|....|.+
T Consensus 491 ~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 491 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred eeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 1010 12356788999999999998 99999999999998888889999999999998877765
No 135
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.09 E-value=7.6e-10 Score=108.63 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=90.5
Q ss_pred ccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCc----
Q 019498 100 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ---- 174 (340)
Q Consensus 100 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~---- 174 (340)
..+|++|+.+|.++|+++|. ++++|+.|+|||++++ ..+++.++.+|+| |+||+++|++|.|.......
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 34799999999999999997 6799999999999995 4556999999999 67999999999886544331
Q ss_pred cCccchhhhhhhcCceE---EEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 175 FRSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 175 ~~~~~~~~~a~a~G~~~---~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
..+.|+.++.++||..- ....-..-.++.++.+.+... +.++|.+|||+.
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l 538 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVIL 538 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEec
Confidence 12357889999997543 112222456777888877632 467899999987
No 136
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.07 E-value=1.3e-09 Score=105.70 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=92.7
Q ss_pred ccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE-EeCCcccccccc------
Q 019498 100 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------ 172 (340)
Q Consensus 100 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv-~nN~~~~~~~~~------ 172 (340)
...+.||+-+.-++|+. +..|++-|++++||||+. |.+.+|.++..++..+++|+ +|-+|+...+.+
T Consensus 441 YgfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~ 514 (617)
T COG3962 441 YGFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGA 514 (617)
T ss_pred ecccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcc
Confidence 34578898888888874 557999999999999998 68888999999999886665 454564322111
Q ss_pred ------------CccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 173 ------------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 173 ------------~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
......||+..|++||+..++|. +++++..|+++|.+ ..+++||+++|..
T Consensus 515 sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 515 SFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 12344689999999999999999 99999988887775 6899999999853
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=9.1e-08 Score=97.20 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=118.5
Q ss_pred ccccccCCchHHHHHHHHHccCCCc--EEEccCccHHH------HHHcC-CC------------HHHHHHHhhcCCCCCC
Q 019498 24 ISFYLTTSGEEAINIASAAAIKNDD--FVVPQYREPGV------LLWRG-FS------------MQEFANQCFGNKADYG 82 (340)
Q Consensus 24 ~~~~~~~~G~Ea~~~~~~~al~~~D--~~~~~yR~~~~------~l~~G-~~------------~~~~~~~~~~~~~~~~ 82 (340)
+|.+-++.|+--+.+|....++..| .++..-.||+. .+.-| ++ +.+++.+|.-
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~------ 133 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSF------ 133 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccC------
Confidence 4788889999888888887777544 34433334421 11122 11 2234444332
Q ss_pred CCCccccccCCCCCCccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC----CEEE
Q 019498 83 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIF 158 (340)
Q Consensus 83 ~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L----pvi~ 158 (340)
-+++++|.....+|.+...|.||+++..|.|+|+- .|+.++.|++|||+..+|...-+...-..++- .++-
T Consensus 134 -PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLP 208 (793)
T COG3957 134 -PGGIGSHVAPETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLP 208 (793)
T ss_pred -CCCcccccCCCCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceee
Confidence 24578898888889999999999999999998764 59999999999998776653322211122222 3788
Q ss_pred EEEeCCccccccccCc-cCccchhhhhhhcCceEEEEcCCCHHHHHHHH
Q 019498 159 ICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 206 (340)
Q Consensus 159 vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~ 206 (340)
|+.-|+|.|+-++.-. .+...+...+++||+.-+.|+|+|+.++...+
T Consensus 209 IL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 209 ILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred EEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 8889999998776433 23456889999999999999999998844443
No 138
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.58 E-value=9.3e-07 Score=83.53 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=100.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCc-ccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc-------ccc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS 172 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~~~ 172 (340)
.+.-|-.+++|.|+.+|. ++..||++.||| ++..|.-+ +.-+.+.+.+|++||.||. |+.+. |..
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 456788899999998886 677999999999 45777543 8888899999988888886 43322 111
Q ss_pred C---------cc-CccchhhhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCCCCCCCC
Q 019498 173 D---------QF-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 241 (340)
Q Consensus 173 ~---------~~-~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~dd~~~Y 241 (340)
. .. ..-|+..++-++|.+.+ ++.--++..+.+.+++|.+ .+||.||++-+.-.. .-+. ..+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~sPC~t---~~~~-~~~ 214 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLSPCPT---GNGR-NTM 214 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEecCCCC---CCCc-ccc
Confidence 1 11 22378889999998755 5655579999999999987 469999999763221 1122 234
Q ss_pred CChHHHHHHHh-CCChHHHHHHHHH
Q 019498 242 RPVDEIEWWRT-TQDPVTRFRKWIE 265 (340)
Q Consensus 242 r~~~e~~~~~~-~~dpi~~~~~~L~ 265 (340)
...++...+-+ ..+|+-++.....
T Consensus 215 ~~~~~~~~ave~g~~pl~~~~~~~~ 239 (294)
T COG1013 215 KTIEEAKLAVETGYWPLYRYEPGKA 239 (294)
T ss_pred hHHHHHHHHHhcCCceeeeccCcch
Confidence 44444444432 3467766655333
No 139
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=98.07 E-value=1.2e-05 Score=80.51 Aligned_cols=108 Identities=22% Similarity=0.202 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCE-EEEEEeCCcccccc--cc-------Ccc--
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTP--IS-------DQF-- 175 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpv-i~vv~nN~~~~~~~--~~-------~~~-- 175 (340)
-++-|+|++.+. .++++.++||=|+-.- .-+|.+......|+ |+|++||+-+|... +. +.+
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 378899998874 4569999999999421 11255566667787 66667777766421 11 111
Q ss_pred -CccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 176 -RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 176 -~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
..-||+..|+.||+.+.+++ +..++..++..+.. ..|-++||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13489999999999999998 88999988887764 3678999999965
No 140
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.06 E-value=1.8e-05 Score=80.26 Aligned_cols=113 Identities=21% Similarity=0.189 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCCcc-ccccccCc-----
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQ----- 174 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~----- 174 (340)
+-.+|.++++|-|++++. .+++|+++|||.|. .|. .+|.-|...+.|++++|.+|.+. +++.+..-
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~ 499 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVA 499 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccc
Confidence 446788888888887764 38899999999994 453 34888889999998888888763 33222111
Q ss_pred -----cCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 175 -----FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 175 -----~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
....++.+..++.|+..+. ||-.|..++.+++++|++ ..+|.+|.++
T Consensus 500 ~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 500 AEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred cCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 1223678899999999876 677899999999999887 5789998553
No 141
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.61 E-value=0.0005 Score=66.51 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred CeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc-------ccc---------CccCccchhhhhhhc
Q 019498 126 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 187 (340)
Q Consensus 126 ~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~~~---------~~~~~~~~~~~a~a~ 187 (340)
..|+++.|||.. ..|.- .+.-|...+-+|++||.||. |+.++ |.. ......|+...+.++
T Consensus 152 ~~v~v~gGDG~~ydIG~~--~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYG--GLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchh--hHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 66643 37667778888988877775 54432 111 111234788899999
Q ss_pred CceEE-EEc-CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 188 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 188 G~~~~-~Vd-G~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
|.+.+ ++. |-++.++.+++++|.+ .+||.||++-+.-
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~sPC 268 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYSPC 268 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEccC
Confidence 98765 454 3589999999999986 5899999998743
No 142
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.23 E-value=0.0016 Score=71.75 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=76.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCCc-ccccccc--CccCc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 177 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~--~~~~~ 177 (340)
...||...+.++|.+.+. .++.+|+++|||.|. .|.. +|.-|...+.|++++|.+|.. ++++-+. ...+.
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 457888888888887763 346799999999994 5543 688888889999888887775 4443322 12223
Q ss_pred cchhhhhhhcCceEEEEcCCCHHH-----HH--------HHHHHHHHHhHccCCCEEEEE
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALA-----IY--------SAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~-----v~--------~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+.++...++.|+.-+.|-..|+.. +. +.+....+..|+.+||++|..
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 344457889999877753335444 22 333333333445788988854
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.20 E-value=0.0064 Score=51.22 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEE-CCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 185 (340)
....+|.|++.+. . ..+++.. |-|..+ ..+.+..|...++|+++|+...+..... .......+....++
T Consensus 46 ~a~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~ 115 (154)
T cd06586 46 GAAGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYR 115 (154)
T ss_pred HHHHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHH
Confidence 3455677776653 3 4444444 888764 5677888888899999999766543211 11112234556667
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.+......+. ++.+..+.+.+|+..+...+||++|++
T Consensus 116 ~~~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 116 SIPEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HhhheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 6666666665 778888888888877777789999975
No 144
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.10 E-value=0.0081 Score=50.99 Aligned_cols=108 Identities=20% Similarity=0.138 Sum_probs=70.5
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEE-CCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG 184 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a 184 (340)
.....+|.|.+++. .+.-+++.+ |=|.+ ....++..|...++|+|+|.-+.......... ....|..+.+
T Consensus 44 ~~A~~~A~g~~~~~----~~~~v~~~~~gpG~~---n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~ 114 (155)
T cd07035 44 QGAVGMADGYARAT----GKPGVVLVTSGPGLT---NAVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALF 114 (155)
T ss_pred HHHHHHHHHHHHHH----CCCEEEEEcCCCcHH---HHHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHH
Confidence 33455666766653 222344444 55544 36688999999999999998654432211111 1123455566
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEE
Q 019498 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 224 (340)
Q Consensus 185 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~ 224 (340)
+.+--...+++ +++++...+.+|+..+... ++|+.|++
T Consensus 115 ~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 115 RPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 66655577787 8999999999999888877 78999986
No 145
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.03 E-value=0.0031 Score=69.45 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=80.9
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCCc-ccccccc--CccCc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 177 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~--~~~~~ 177 (340)
...||...+.++|.+... .++.||+++|||.|. .|.. +|.-|...+.|++++|.+|.. ++++-+. ...+.
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~ 553 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSV 553 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcch
Confidence 457888888889987652 456799999999994 5543 477888889999888877764 5544332 22345
Q ss_pred cchhhhhhhcCceEEEEcCCCHHHHHHH--------------HHHHHHHhHccCCCEEEEE
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a--------------~~~a~~~~r~~~~P~lIe~ 224 (340)
.++....++.|+.-+.|--.|+...... ++...+..|+.+|+++|..
T Consensus 554 ~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 554 PQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred hhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 6888999999998777543356555433 4444444446788888854
No 146
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.99 E-value=0.013 Score=50.77 Aligned_cols=106 Identities=16% Similarity=0.042 Sum_probs=74.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.+.+. +.-.++++..|=|.++ ..-++..|...++|+|+|.-+........ ......|..+.++.+-
T Consensus 51 ~~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (164)
T cd07039 51 AFAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVA 122 (164)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhh
Confidence 34566666543 3345566666777775 45678888899999999986554332111 1111236677888887
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
-...+++ +++++.+++.+|+..++..+||+.|++
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 123 VYNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 7788888 899999999999988887789999987
No 147
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.97 E-value=0.0081 Score=66.91 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=69.8
Q ss_pred CeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCC-ccccc-------ccc---------CccCccchhhhhhhc
Q 019498 126 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 187 (340)
Q Consensus 126 ~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~-------~~~---------~~~~~~~~~~~a~a~ 187 (340)
..|+++.|||.. ..|. ..+.-+...+.+|.+||.||. |+.++ |.. ......|+...+.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999955 5663 337777788899988877775 54432 211 111234788899999
Q ss_pred CceEE-EEc-CCCHHHHHHHHHHHHHHhHccCCCEEEEEEEec
Q 019498 188 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYR 228 (340)
Q Consensus 188 G~~~~-~Vd-G~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R 228 (340)
|.+++ ++. |-++.++.+++++|.. .+||.+|++-+.-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSPC 1068 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECCC
Confidence 98755 565 5689999999999986 5899999998754
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.95 E-value=0.009 Score=51.02 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=69.6
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 185 (340)
+....+|-|.+.+. . +.+++..|-|..+ ....|..|...+.|+|+|+-+-...............+....++
T Consensus 51 ~~A~~~A~g~~r~~----~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 122 (160)
T cd07034 51 HAAAEAAIGASAAG----A-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGG 122 (160)
T ss_pred HHHHHHHHHHHhhC----C-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCC
Confidence 34455566666542 2 2666777887775 56678888888899999986544321110000111112233444
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
. .+.+.++. +++++.+.+++|++.++++++|++|..
T Consensus 123 ~-~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 123 H-PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred C-CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 4 47777777 899999999999999999889999865
No 149
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.91 E-value=0.022 Score=49.04 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHH-hCCCCEEEEEEeCCc-cccccccCccCccchh-h
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGW-AISTPISDQFRSDGAV-V 182 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~-~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~~-~ 182 (340)
+.+.++|.|..++ .++.++|+.+=|- |...-+|..|. ..++|+|+|+-.-+. +...+. +.....+. .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEKIPA--QIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCcc--ccchhhhhHH
Confidence 5556667776644 3556788877773 35677788888 899999999944332 111111 11111111 1
Q ss_pred hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
.....+++...++ +++++ .++.+|+..+.++++|++|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 2345677888887 79999 9999999999999999998764
No 150
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.76 E-value=0.019 Score=49.48 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=72.4
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccccc-c--cCcc---Cccc
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-I--SDQF---RSDG 179 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~-~--~~~~---~~~~ 179 (340)
....-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|+|+|+-+........ . .... ...|
T Consensus 45 ~~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d 117 (162)
T cd07038 45 LNAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDV 117 (162)
T ss_pred HHHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHH
Confidence 33345566666553 123344444666665 55678888899999999986554221111 0 0000 0124
Q ss_pred hhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 180 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
..+.++.+.-...+|. +++++..++++|+..+..+++|++|++
T Consensus 118 ~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 118 FLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5677777777788887 889999999999998888889999986
No 151
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.70 E-value=0.013 Score=50.78 Aligned_cols=111 Identities=20% Similarity=0.079 Sum_probs=74.0
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 185 (340)
+....+|.|.+++. +.-.++++..|=|.++ ..-+|..|...+.|+|+|+-.-......... .....|....++
T Consensus 49 ~~A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~~~d~~~~~~ 121 (172)
T PF02776_consen 49 QGAAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGA-FQQEIDQQSLFR 121 (172)
T ss_dssp HHHHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTS-TTSSTHHHHHHG
T ss_pred chhHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccc-cccchhhcchhc
Confidence 34455677777653 2223344444555554 4556777888999999999776544332111 111236777888
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHh-HccCCCEEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEAL 225 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~-r~~~~P~lIe~~ 225 (340)
.+.-...+++ +++++..++++|+..+ ...++|+.|++-
T Consensus 122 ~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 122 PVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp GGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 8888888998 8888899999998888 667899999984
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.61 E-value=0.011 Score=65.26 Aligned_cols=117 Identities=14% Similarity=0.042 Sum_probs=77.0
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCCc-ccccccc--CccCc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 177 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~--~~~~~ 177 (340)
...||.....++|.+... .++.+|+++|||.|. .|. -+|.-|...+.|++++|.+|.. ++++-+. ...+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 357888888888887653 356799999999994 453 3488888889999888877764 5543322 22233
Q ss_pred cchhhhhhhcCceEEEEcCCCHHHHH--------------HHHHHHHHHhHccCCCEEEEE
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~v~--------------~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+.++...++.|+.-+.|--.|+..+. +.+....+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 44555789999987775322454443 334444444446788888853
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.77 E-value=0.071 Score=46.08 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|-|.|.+. +...++++..|=|..+ ..-++..|...+.|+|+|+-.-....... ......|....++.+
T Consensus 47 A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~v 118 (162)
T cd07037 47 AAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDY 118 (162)
T ss_pred HHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhccce
Confidence 344666666543 3334455555677765 44568888889999999986543222111 111123455566666
Q ss_pred CceEEEEcCCCHHH------HHHHHHHHHHHhHccC-CCEEEEE
Q 019498 188 GVRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEA 224 (340)
Q Consensus 188 G~~~~~VdG~d~~~------v~~a~~~a~~~~r~~~-~P~lIe~ 224 (340)
--...+|. ++++ +...+.+|+..++.++ ||++|++
T Consensus 119 tk~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 119 VRWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred eeEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 55566665 5555 6777778877777764 8999986
No 154
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.48 E-value=0.12 Score=50.30 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchh-h-hh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-V-KG 184 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~-~a 184 (340)
..+.+|+|++++ ..++++.+-++++. ..+|.|..|+-..+|+++++.+-. +-++- .-+....|.. . +.
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g-~t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCC-CCcchhHHHHHHHhc
Confidence 347788898887 55789999888887 678999999999999988876643 11110 1111111221 1 11
Q ss_pred h---hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 185 R---AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 185 ~---a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
. -++|.++... |+.++++....|++-+.+..-|+++-.+++ .+|+..
T Consensus 129 ~ghgd~~~~vl~p~--~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 129 GGHGDYRLIVLAPS--SVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred CCCCCcceEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 1 2456666555 999999999999988888888999988884 467654
No 155
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.41 E-value=0.15 Score=50.20 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=77.1
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchh-hhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGR 185 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~~a~ 185 (340)
..+.+|+|++++ ..++++.+-=+++. -.+|.+.+++-..+|+|+++.+.... ++...-.....|+. .+..
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~ 129 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGP-STGQPTKPAQGDMMQARWG 129 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHHHHHhcc
Confidence 447788888887 44566666656665 56899999999999998888765421 11111011112332 2333
Q ss_pred h---cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 186 A---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 186 a---~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
+ ++|.++ ...|+.++++....|++.+.+..-|+++-.+.+ -+|+..
T Consensus 130 ~hgd~~~ivl--~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 130 THGDHPIIAL--SPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred cCCCcCcEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 3 345444 445999999999999988888888999998883 677754
No 156
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=95.40 E-value=0.08 Score=51.72 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=72.8
Q ss_pred cccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCc-chHHHHHHHHHhCCCCEEEEEEeCCc-ccc-ccccCccCccch
Q 019498 104 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNNGW-AIS-TPISDQFRSDGA 180 (340)
Q Consensus 104 ~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~-G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~-~~~~~~~~~~~~ 180 (340)
.=|.++++|.|+.+|. .++.++++=--++.. -...-+|.....|++|++++|-.-+. +.. .|+.... ..-.
T Consensus 34 ~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G~~t 107 (361)
T TIGR03297 34 NEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-GRIT 107 (361)
T ss_pred CchHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-hHHH
Confidence 3578888999988872 344455543333321 01222333356799999999966553 211 2221111 2223
Q ss_pred hhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 181 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 181 ~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
..+.+++|++...++ .+.++..+++.+|.+++.+.++|+.|-+.
T Consensus 108 ~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 108 LSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 567889999999994 26678888888888888888999987664
No 157
>PRK08611 pyruvate oxidase; Provisional
Probab=95.18 E-value=0.2 Score=51.99 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=74.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.......... .....|..+.++.+.
T Consensus 56 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKLT---GKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHHh---CCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhccc
Confidence 44566666443 3445566666888886 456688888999999999865443322111 111235667777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...+|+ +++++..++.+|+..+.+.+||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6677787 89999999999988888888999998743
No 158
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.00 E-value=0.2 Score=51.73 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 185 (340)
+...-+|-|.|.. .+...++++..|=|+++ ..-.|..|..-..|+|+|.-.=.... ...+.+...|...+++
T Consensus 49 q~Aa~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~--~g~~afQe~D~~~l~~ 120 (550)
T COG0028 49 QGAAFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSL--IGTDAFQEVDQVGLFR 120 (550)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccc--cCcchhhhcchhhHhh
Confidence 3444566666644 46778899999999996 55668889999999999874111110 0011112236777787
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 225 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 225 (340)
.+--...+|. +++++.+.+++|+..+.+++ ||++|++-
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 7777788888 99999999999999988876 89999763
No 159
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=95.00 E-value=0.1 Score=47.72 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=69.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccc-ccccCccCccchhhhhhhc
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~-~~~~~~~~~~~~~~~a~a~ 187 (340)
+.+++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++.|-..... .++. ....|+. .++-+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~--~~q~D~~-~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQ--PEQDDLM-AARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--S--B-SHHHH-HTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCc--CChhHHH-HHHhc
Confidence 6778888776 34555555545554 4677899999999999888876543222 1111 1112222 23367
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 234 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~ 234 (340)
||.++... |+.+.++....|.+.+.+..-|+++-...++. .|+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 88888776 99999999999998888889999999888764 3554
No 160
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.96 E-value=0.22 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.................|....++.+-
T Consensus 53 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vt 126 (554)
T TIGR03254 53 GYAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFA 126 (554)
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhh
Confidence 44566666543 3345566666888886 44568888899999999985543221100111112235677888887
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|+ +++++.+.+.+|+..+.++ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 127 KAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 7788888 8999999999998887775 4889997753
No 161
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.89 E-value=0.29 Score=48.39 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
.+.+|+|++++ +.++++.+-=++++ ..+|.|.+|+-.++|+|+++.|-... ++.+-.....|+.. ++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~-~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLA-QRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHH-Hhhc
Confidence 47788898887 45677777666676 57899999999999988777643322 22221111223332 2333
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
||-.+.. .|+.+.++....|++.+.+..-|+++-.+.++.. |...
T Consensus 130 g~i~~~~--~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~~ 174 (390)
T PRK08366 130 GWMQFYA--ENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTYD 174 (390)
T ss_pred CEEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-cccc
Confidence 7744444 4999999999999988888899999999888764 5443
No 162
>PRK07524 hypothetical protein; Provisional
Probab=94.77 E-value=0.32 Score=49.92 Aligned_cols=112 Identities=17% Similarity=0.030 Sum_probs=76.1
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccc-cCccCccchhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKG 184 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~-~~~~~~~~~~~~a 184 (340)
+...-+|-|.|... +.-.++++..|=|.++ ..-++..|...++|||+|+-.......... .......|...++
T Consensus 49 ~~A~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~ 122 (535)
T PRK07524 49 QGAGFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMV 122 (535)
T ss_pred HHHHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHh
Confidence 34455666666543 3345666667888886 456788889999999999854332211100 0001123667788
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 185 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
+.+--...+|. +++++...+.+|+..+++. .||+.|++-
T Consensus 123 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 123 AGVAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred hhhceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 88877788888 8999999999999888876 599999875
No 163
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.55 E-value=0.36 Score=50.21 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=71.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... .......|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~t 127 (588)
T PRK07525 56 GHMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhhe
Confidence 34556665543 3345566666888886 4566888888999999998221111000 00111125556777766
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...++. +++++...+.+|+..++..+||+.|++-.
T Consensus 128 k~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 128 KYQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred eEEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 6677777 89999999999998888889999998853
No 164
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.53 E-value=0.38 Score=49.58 Aligned_cols=108 Identities=16% Similarity=0.017 Sum_probs=72.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +...++++..|=|.++ ..-++..|..-+.|+|+|+-.-...... .......|....++.+-
T Consensus 52 ~~mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vt 123 (549)
T PRK06457 52 ALAASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVA 123 (549)
T ss_pred HHHHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhccce
Confidence 34566666543 3445566666888886 4567888889999999998543221111 11111225566676665
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...+|. +++++..++.+|+..+...+||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 124 VFNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 5667777 88899999999988887778999998853
No 165
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.50 E-value=0.36 Score=49.92 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.+... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...............|...+++.+-
T Consensus 60 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~t 133 (569)
T PRK09259 60 GNAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhe
Confidence 34555665542 3344556666888886 44668888999999999985433221000011112235667777777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
-...+|+ +++++...+.+|+..+.++ .||+.|++-
T Consensus 134 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 134 KAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 7778887 8999999999999888775 589999875
No 166
>PRK07064 hypothetical protein; Provisional
Probab=94.45 E-value=0.4 Score=49.22 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=72.6
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC-ccCccchhhhhhhc
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-QFRSDGAVVKGRAY 187 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~-~~~~~~~~~~a~a~ 187 (340)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-+-.......... .....|..+.++.+
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (544)
T PRK07064 54 VNMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAV 127 (544)
T ss_pred HHHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhh
Confidence 44666766543 3345566666888886 45678888899999999985422111000000 01123566777777
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
--...+|+ +++++..++.+|+..+... .||+.|++-.
T Consensus 128 tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 128 SKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 66677787 8889999999998877776 6999998753
No 167
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.35 E-value=0.45 Score=40.61 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHH-HHHhCCCCEEEEEEeCCccc--cccccCccCccchhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVK 183 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~-~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~ 183 (340)
..+++|.|+|+. + .+++++.. ..|.. ..++.+. .++.+++|+++++...++.. ..++.. ...+++ .
T Consensus 50 ~~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~~~~a-~ 118 (156)
T cd07033 50 NMVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GIEDIA-L 118 (156)
T ss_pred HHHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hHHHHH-H
Confidence 335567777653 2 34444444 44432 4556565 88899999999998766554 333221 122233 2
Q ss_pred hhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 184 GRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 184 a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.+.+ |+.++.-- |+.++...++.|++ .++|++|-.
T Consensus 119 ~~~iPg~~v~~Ps--~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 119 LRAIPNMTVLRPA--DANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred hcCCCCCEEEecC--CHHHHHHHHHHHHh----CCCCEEEEe
Confidence 3333 55555544 89999999999986 467988753
No 168
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.32 E-value=0.36 Score=50.04 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=74.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|+-.-...... ....-..|...+++.+-
T Consensus 55 ~~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~t 126 (574)
T PRK07979 55 VHMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVV 126 (574)
T ss_pred HHHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhccc
Confidence 44666666543 3445667777888886 4456888888999999998543322111 11111236667777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|. +++++...+++|+..++.+. ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 127 KHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 6777887 89999999999998888774 999998754
No 169
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.29 E-value=0.42 Score=49.68 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=72.7
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.... ++-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......|....++.+-
T Consensus 55 ~~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~it 127 (591)
T PRK11269 55 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVT 127 (591)
T ss_pred HHHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhcce
Confidence 445666665420 3344556666888886 44568888889999999985433221111 1111235667777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|. +++++..++++|+..++.++ ||+.|++-.
T Consensus 128 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 128 KWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 6677777 89999999999998887764 899998863
No 170
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.27 E-value=0.55 Score=48.86 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.+.. +.-.++++..|=|.++ ..-++..|...+.|||+|+-.-....... ......|....++.+-
T Consensus 54 ~~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vt 126 (588)
T TIGR01504 54 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVS 126 (588)
T ss_pred HHHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhc
Confidence 345556554320 2333444555888776 44568888899999999985433222111 1112236677788777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|. +++++..++++|+..++.++ ||++|++-.
T Consensus 127 k~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 127 KMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 7777887 89999999999998887764 899998754
No 171
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.26 E-value=0.38 Score=49.87 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=71.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|...+.|||+|.-.-..... ........|....++.+-
T Consensus 52 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 52 GHMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhcce
Confidence 3455666544 23445556666888886 456688888999999999732111100 011111225666777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
-...+|. +++++...+.+|+..+..++||++|++-
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 124 KYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 6677787 8999999999999888888899999875
No 172
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.24 E-value=0.4 Score=50.18 Aligned_cols=109 Identities=19% Similarity=0.147 Sum_probs=73.1
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
.+.-+|.|.|.. .+.-.++++..|=|.++ ..-+|..|..-+.|||+|.-.-..... ........|....++.
T Consensus 71 ~Aa~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~ 142 (616)
T PRK07418 71 GAAHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLP 142 (616)
T ss_pred HHHHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhh
Confidence 334566666644 34445566666888886 456688889999999999853221110 0111112356667776
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEAL 225 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~ 225 (340)
+--...+|+ +++++..++.+|+..+.+++ ||++|++-
T Consensus 143 vtk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 143 IVKHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred cceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 666667788 89999999999998888776 99999865
No 173
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.22 E-value=0.41 Score=49.55 Aligned_cols=108 Identities=19% Similarity=0.088 Sum_probs=72.2
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|... +...++++..|=|.++ ..-++..|...+.|||+|.-.-...... .......|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMG--KMAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccC--CCCccccchhhhhhccc
Confidence 44566666542 3333445556888886 4566888888999999998543222111 11111225566777777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|+ +++++..++.+|+..+++++ ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 7777887 89999999999998888765 999998753
No 174
>PRK08266 hypothetical protein; Provisional
Probab=94.12 E-value=0.47 Score=48.70 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=72.6
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCc-cCccchhhhhhhc
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 187 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~-~~~~~~~~~a~a~ 187 (340)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|+|+|+-.=..........+ ....|....++.+
T Consensus 56 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (542)
T PRK08266 56 GYMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSF 129 (542)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhh
Confidence 34666766553 3334555666888886 456788888999999999843211110000001 1123667777877
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
--...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 130 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 130 TKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 77788888 8899999999998887774 5899998864
No 175
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.06 E-value=0.42 Score=49.55 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|...+++.+-
T Consensus 65 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 44666666543 3445666667888886 4556778888899999998433222111 11112236677888887
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|. +++++...+++|+..++.++ ||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 7778887 89999999999998888874 899998753
No 176
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.02 E-value=0.48 Score=49.09 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=72.7
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|... +...++++..|=|.++ ..-++..|...++|||+|+-.-...... ......-|...+++.+-
T Consensus 62 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vt 133 (578)
T PRK06112 62 GAMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhcccc
Confidence 44566666543 3445566666777775 4567888889999999998432211110 11111235667777777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 7777887 8999999999999888776 4899998754
No 177
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.94 E-value=0.46 Score=49.19 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......|...+++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~it 126 (574)
T PRK06466 55 THMADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIV 126 (574)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhccc
Confidence 34566666542 3445666667888886 45678888899999999985433221111 1111235666777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|+ +++++...+.+|+..++++ .||+.|++-.
T Consensus 127 k~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 127 KHSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 6777888 8999999999999888777 4999998754
No 178
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.94 E-value=0.49 Score=49.42 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
...-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|...+++.
T Consensus 80 ~A~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~ 151 (612)
T PRK07789 80 GAGHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMP 151 (612)
T ss_pred HHHHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhc
Confidence 3345566666543 3445566667888886 4566888888899999998533221111 111112356677777
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
+--...+|+ +++++...+.+|+..++.+ .||++|++-.
T Consensus 152 ~tk~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 152 ITKHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred ceeEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 766677787 8999999999999888776 4899998854
No 179
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.86 E-value=0.46 Score=48.85 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......|....++.+
T Consensus 50 A~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~ 121 (548)
T PRK08978 50 AAMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCc
Confidence 344566666553 3445666666888886 45678888899999999984332211111 111112455666666
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
--...+|+ +++++...+.+|+..++.. .||+.|++-.
T Consensus 122 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 122 TKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 66677787 8999999999999888776 4999998753
No 180
>PRK07586 hypothetical protein; Validated
Probab=93.84 E-value=0.48 Score=48.31 Aligned_cols=109 Identities=18% Similarity=0.093 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ....-..|...+++.+
T Consensus 51 A~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~v 122 (514)
T PRK07586 51 ATGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPV 122 (514)
T ss_pred HHHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhccc
Confidence 344566666543 3334566666888775 4455777888999999998543221111 1111123666777777
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
--...+|. +++++.+.+.+|+..++.+ .||++|++-.
T Consensus 123 tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 123 SGWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred cceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 66677787 8999999999999888887 6999998754
No 181
>PRK08322 acetolactate synthase; Reviewed
Probab=93.72 E-value=0.56 Score=48.17 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=72.2
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|+|+|+-.-...... .......|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 44566666543 3344555566888886 4567888888999999998532221111 11111235667777766
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..+.+. .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 6677777 8999999999999888876 4899998754
No 182
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.71 E-value=0.55 Score=48.59 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhh
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~ 185 (340)
....-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... .....-|....++
T Consensus 63 ~~A~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~ 134 (571)
T PRK07710 63 QGAIHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITM 134 (571)
T ss_pred HHHHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhh
Confidence 33345666766553 3334556666888886 45668888889999999985433221111 1111235566676
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
.+--...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 135 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 135 PVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 6655667777 8899999999999888776 4999998864
No 183
>PLN02470 acetolactate synthase
Probab=93.71 E-value=0.52 Score=48.99 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+
T Consensus 63 A~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~ 134 (585)
T PLN02470 63 EVFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSI 134 (585)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhh
Confidence 345666776543 3445666777888886 4566888888999999997533221110 1111123455677777
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
--...+|+ +++++.+++.+|+..+++++ ||+.|++-.
T Consensus 135 tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 135 TKHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred eEEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 66677787 89999999999998888765 999998854
No 184
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.68 E-value=0.59 Score=48.22 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=73.1
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 52 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 52 AHAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCcc
Confidence 44566666543 3345666667888886 4567888889999999998532211110 11111235566777777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|+ +++++...+.+|+..+...+ ||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 7788887 89999999999998887764 899998753
No 185
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=93.57 E-value=0.5 Score=48.57 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccc---cCccC-ccchhhhhh
Q 019498 110 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGR 185 (340)
Q Consensus 110 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~~-~~~~~~~a~ 185 (340)
-+|-|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-.......... +.+.. .++....++
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (535)
T TIGR03394 52 FAADAAARYR---GTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFK 125 (535)
T ss_pred HHHhHHHHhh---CCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhh
Confidence 3466666543 3445666777888886 345688888899999999854332211110 01110 113456666
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.+--...+|. +++++.+++.+|+..+...+||++|++-.
T Consensus 126 ~vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 126 EVTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred hheEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 6655566676 78888888888887777778999998864
No 186
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.53 E-value=0.63 Score=48.08 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... .....-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 44567776653 2333455555888876 45568888899999999974332211111 1111124555666665
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
-...+|+ +++++...+.+|+..++.. .||+.|++-
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5667777 8999999999999888777 499999884
No 187
>PRK12474 hypothetical protein; Provisional
Probab=93.53 E-value=0.67 Score=47.37 Aligned_cols=108 Identities=18% Similarity=0.023 Sum_probs=71.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-......... ......|....++.+-
T Consensus 56 ~~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 127 (518)
T PRK12474 56 TGAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhccc
Confidence 3456666654 34445566667888775 34557778888999999985432211111 1111236667777766
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|+ +++++..++++|+..+.+++ ||++|++-.
T Consensus 128 k~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 128 RWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 6666777 89999999999998777765 899998754
No 188
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.49 E-value=0.57 Score=48.83 Aligned_cols=108 Identities=14% Similarity=0.003 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.=...... .......|....++.+-
T Consensus 55 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~vt 126 (597)
T PRK08273 55 AFMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG--GHYQQEVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC--CCCCCccCHHHHHHHHH
Confidence 44566666543 3344556666888886 4456888888999999998432111100 11111234556666655
Q ss_pred -ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 -VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 -~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...+|+ +++++...+.+|+..+...+||+.|++-.
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 4566777 88999999999998888888999998754
No 189
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.40 E-value=0.59 Score=48.69 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=73.9
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
...-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... ......|....++.
T Consensus 60 ~A~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~ 131 (595)
T PRK09107 60 GAGHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRP 131 (595)
T ss_pred HHHHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhh
Confidence 3344566666542 3345566667888886 44568888889999999985443221111 11112355667776
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
+--...+|+ +++++...+.+|+..++++. ||+.|++-.
T Consensus 132 vtk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 132 CTKHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred heEEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 666677787 89999999999999888874 899998743
No 190
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.39 E-value=0.72 Score=47.56 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|||+|.-.-...... ......-|....++.+=
T Consensus 59 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKLT---GRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 44566666542 3344566666888886 4567888888999999998432211111 11111124556666665
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
-...+|. +++++...+.+|+..+..+ .||+.|++-
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 5566676 8999999999999888777 489999875
No 191
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=93.33 E-value=0.71 Score=45.86 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
.+.+++|++++ +.++++.+-=.+++ ..+|.|..|+-.++|+|+++.+-+.... ..-.....|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHH-HhcC
Confidence 47788888887 34566666555555 5789999999999998888777664321 111111223332 2444
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc--CCCEEEEEEEecCCCCC
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 233 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~--~~P~lIe~~t~R~~gHs 233 (340)
||.++... |+.++++....|++.+.+. .-|+++-.+.++. +|+
T Consensus 137 g~ivl~p~--s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWISLCTC--NPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 66665555 9999999999999887665 7899998888653 454
No 192
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.30 E-value=0.68 Score=47.98 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=72.6
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... .......|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 45666766543 3344555556888886 3456778888899999997433221111 11111235667777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|+ +++++...+.+|+..++.++ ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 6777888 89999999999998888765 899998753
No 193
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.29 E-value=0.76 Score=47.74 Aligned_cols=109 Identities=20% Similarity=0.147 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
...+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... ......-|....++.+
T Consensus 50 A~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~ 121 (586)
T PRK06276 50 AAHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhh
Confidence 345666666543 3345566666888886 4566888889999999997432211110 1111123566677777
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
--...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 122 tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 122 TKHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred cceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 77777887 8899999999999888776 4899998763
No 194
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.10 E-value=0.81 Score=47.37 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=71.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... .......|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vt 126 (574)
T PRK06882 55 VHMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhccc
Confidence 34566666543 3344556666888776 4456888888999999998543322111 11111235666777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 127 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 6677887 8999999999999877775 4999998854
No 195
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.09 E-value=0.96 Score=44.76 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=76.2
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
..+.+++|++++ ..++++.+-=.+++ ..+|.|..|+-.++|+++++-|-..+. +..-.....|+. -.+.
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd 129 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRD 129 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hccc
Confidence 347788888887 34566666555554 578999999999999998875543332 221111112322 2245
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccC--CCEEEEEEEecCCCCCC
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 234 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~--~P~lIe~~t~R~~gHs~ 234 (340)
.||-.... .|+.++++-...|++.+.+.+ -|+++-.+.||. +|+.
T Consensus 130 ~g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 130 TGWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred cCeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 67776655 499999999888988777433 699999999885 4654
No 196
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=93.00 E-value=0.6 Score=48.39 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchh-hhhh-
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGR- 185 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~-~~a~- 185 (340)
.+.+|+|+++| ..++++.+-=.+++ ...|.|.+|+-..+|+|+++-+-. +.++...-.....|+. .+..
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence 37788888887 34566666666665 678999999999999877765543 2222111111112222 2221
Q ss_pred --hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCC
Q 019498 186 --AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 234 (340)
Q Consensus 186 --a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~ 234 (340)
-++|.++... |+.++++....|++.+.+..-|+++-.+.+. +|+.
T Consensus 320 hgd~~~ivl~p~--~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l--~~~~ 366 (562)
T TIGR03710 320 HGEFPRIVLAPG--SPEECFYLAIEAFNLAEKYQTPVIVLSDQYL--ANSY 366 (562)
T ss_pred CCCcCceEEcCC--CHHHHHHHHHHHHHHHHHhcCCEEEEechHH--hCCc
Confidence 2456555544 9999999999999888888999999998874 4543
No 197
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.92 E-value=0.74 Score=45.23 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC-ccccccccCccCccch-hhhhh
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGR 185 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~-~~~~~~~~~~~~~~~~-~~~a~ 185 (340)
.+.+|+|+++| ..++++.+.=+++. -.+|.+.+|+-..+|+++++.+-. -+...++.. ...|+ ..+..
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~--~q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRV--AQGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCcc--chHHHHHHhcC
Confidence 37788888887 34566666555565 468999999999999988766532 111111111 11122 12222
Q ss_pred h---cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 186 A---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 186 a---~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
+ |+|-+ +...|+.+++.....|++.+.+..-|++|-.+. +. +|+..
T Consensus 129 ~hgd~~~iv--l~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 129 THGDFKSIA--LAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCCcCcEE--EeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 2 45543 455599999999999998888888999998888 33 77654
No 198
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.80 E-value=0.86 Score=47.15 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|...+++.+
T Consensus 60 A~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~i 131 (566)
T PRK07282 60 ALHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCC
Confidence 345566666543 3345666667888886 4456778888899999998543221111 1111112455677777
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
--...+|+ +++++..++.+|+..+++++ ||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 66677787 89999999999998888764 999998744
No 199
>PRK05858 hypothetical protein; Provisional
Probab=92.78 E-value=0.97 Score=46.49 Aligned_cols=108 Identities=17% Similarity=-0.004 Sum_probs=70.6
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +...++++..|=|.++ ..-++..|..-+.|||+|.-.-..........+ ..|....++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 44566666552 3334555555777775 456788888999999988753322211111111 235566777777
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|+ +++++.+.+.+|+..+... .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 7777887 7889999999998777665 5899998753
No 200
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.68 E-value=1.1 Score=46.04 Aligned_cols=107 Identities=19% Similarity=0.052 Sum_probs=69.6
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCc
Q 019498 110 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 189 (340)
Q Consensus 110 p~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~ 189 (340)
-+|-|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|+|+|+-.-...... .......|....++.+--
T Consensus 50 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 50 FMAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhccee
Confidence 355565543 33345566666888876 4456888888999999998532221111 111112355566776655
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 190 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 190 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
...+++ +++++...+.+|+..++.. .||+.|++-.
T Consensus 122 ~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 122 YSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 566676 8999999999998877776 4899998754
No 201
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.60 E-value=1.1 Score=46.42 Aligned_cols=108 Identities=14% Similarity=0.018 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... ......-|....++.+-
T Consensus 51 ~~~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vt 122 (575)
T TIGR02720 51 ALAAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVA 122 (575)
T ss_pred HHHHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcc
Confidence 3455565543 34445666677888886 4566888888999999998543321111 11111124455666665
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..+.+.+||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 158 (575)
T TIGR02720 123 VYNRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPV 158 (575)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 5566676 78888888888888777788999998864
No 202
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.60 E-value=1.1 Score=46.49 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=71.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.=...... .......|....++.+-
T Consensus 72 ~~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~it 143 (587)
T PRK06965 72 VHAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIV 143 (587)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCc
Confidence 44666776553 3344556666777776 4456778888899999997322111100 11111235566777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 144 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 144 KHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 6777888 8999999999999888887 4999998754
No 203
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.56 E-value=0.65 Score=48.10 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=72.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccc----c--CccCc-cchh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAV 181 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~----~--~~~~~-~~~~ 181 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-........ . ..... .|..
T Consensus 63 ~~~Adgyar~t---gk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~ 136 (569)
T PRK08327 63 ISMAHGYALVT---GKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQG 136 (569)
T ss_pred HHHHHHHHHhh---CCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHH
Confidence 44566665542 3345566667888876 456788888999999999865432221100 0 00111 2566
Q ss_pred hhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 182 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 182 ~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
..++.+--...+|+ +++++..++.+|+..++.+ +||++|++-
T Consensus 137 ~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 137 GLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 67776665667787 8999999999999888875 699999875
No 204
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=92.46 E-value=1.9 Score=37.46 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHhhhcCC-CCeEEEEECCcccC-cchHHHHHH-HHHhCCCCEEEEEEeCCccccccccCccCccchhhh
Q 019498 107 TQLPHAVGAAYALKMDRK-DACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK 183 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG~~~-~G~~~Eal~-~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~ 183 (340)
..+++|.|+|++ ++ ..+++..++|=... +-...+.+. ..+..++|+. |+..-+++.........+..+.+ .
T Consensus 59 ~~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~-~ 132 (178)
T PF02779_consen 59 NMVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEA-I 132 (178)
T ss_dssp HHHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHH-H
T ss_pred hccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccccc-c
Confidence 346677777766 22 23344444433320 123445555 6777889998 66555543322222222333333 4
Q ss_pred hhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 184 GRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 184 a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.+++ |+.++.-- |+.++...++.+++. +.++|++|-.
T Consensus 133 ~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 133 LRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp HHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 4444 77777666 899999999988862 2478998865
No 205
>PRK08617 acetolactate synthase; Reviewed
Probab=92.38 E-value=0.96 Score=46.57 Aligned_cols=108 Identities=16% Similarity=0.044 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-......... ......|....++.+-
T Consensus 55 ~~~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~t 126 (552)
T PRK08617 55 AFMAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPIT 126 (552)
T ss_pred HHHHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhc
Confidence 3355555543 23344555666888886 44568888888999999974322111111 1111234556777776
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|+ +++++..++.+|+..+.++ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 127 KYSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 6677887 8999999999999887776 4899998753
No 206
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.28 E-value=1.1 Score=46.43 Aligned_cols=108 Identities=20% Similarity=0.145 Sum_probs=70.0
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.=..... .......-|....++.+-
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 4456666544 23445566666888886 445688888889999999742111100 001111224555666666
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|+ +++++..++.+|+..+++++ ||+.|++-.
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5666776 99999999999998888765 899998753
No 207
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.26 E-value=1.3 Score=45.76 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
..-+|-|.+... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+
T Consensus 57 A~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~i 128 (561)
T PRK06048 57 AAHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCc
Confidence 345666666543 3445566666888886 4566888888999999997432211110 0111123556666666
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
--...+|. ++.++..++.+|+..++++ +||+.|++-
T Consensus 129 tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 129 TKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred ceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 55667777 8899999999999888776 489999884
No 208
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.20 E-value=1.1 Score=46.44 Aligned_cols=108 Identities=22% Similarity=0.182 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... ......-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (585)
T CHL00099 64 AHAADGYARST---GKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIV 135 (585)
T ss_pred HHHHHHHHHhc---CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCce
Confidence 44566665442 3445566666888886 3456888888999999998432211100 00111124555666666
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 136 KHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 6677787 8999999999999887765 4899998753
No 209
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.15 E-value=1.1 Score=46.85 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=70.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCC--CCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE--APVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~--Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
+.+++|++++ ..++++.+-=.+++ ...|.|..++..+ +|+|+++-|. -+-. +.+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~---~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMH---SSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCc---cchhhHhHHH-HHHh
Confidence 5678888886 34566665555554 4567777776544 4776666543 2211 1111112322 3445
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
.+|+++... |+.++++...+|++-+++.+-|++|-... .-+|+..
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~~ 170 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMRG 170 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee--eecccee
Confidence 688866655 89999999999999988899999998875 4556654
No 210
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.11 E-value=1.4 Score=45.70 Aligned_cols=105 Identities=15% Similarity=-0.011 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEE--ECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~--~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
.-+|-|.|... ++..+|+ .|=|.++ ..-++..|..-+.|+|+|.-+-....... ......|...+++.
T Consensus 54 ~~~Adgyar~t-----g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~ 123 (574)
T PRK09124 54 AFAAGAEAQLT-----GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRE 123 (574)
T ss_pred HHHHHHHHHhh-----CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhccc
Confidence 34566666542 2334444 5777775 33557788888999999985432211111 11111245566666
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
+-....+|+ +++++...+.+|+..+...+||+.|++-
T Consensus 124 itk~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 124 CSHYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred ceeeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 655566677 8888888888888887777899999873
No 211
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=92.10 E-value=2.3 Score=39.82 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=58.1
Q ss_pred eEEEEECCcc--cCcchHHHHHHHHHhCCCCEEEEEEeCC---cccccccc--CccCc-cchhhhhhhcCceEEEE-cCC
Q 019498 127 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPIS--DQFRS-DGAVVKGRAYGVRSIRV-DGN 197 (340)
Q Consensus 127 ~vv~~~GDG~--~~~G~~~Eal~~A~~~~Lpvi~vv~nN~---~~~~~~~~--~~~~~-~~~~~~a~a~G~~~~~V-dG~ 197 (340)
.++.++.||. +.+|..-..+.-|...++-++||+.+|. -+|..... ..... ..+......|++|++.| .
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~-- 243 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVR-- 243 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEec--
Confidence 8999999999 8888887778888888997766665543 23321111 00011 14667889999998874 5
Q ss_pred CHHHHHHHHHHHHH
Q 019498 198 DALAIYSAVHAARE 211 (340)
Q Consensus 198 d~~~v~~a~~~a~~ 211 (340)
|+.++..++..++.
T Consensus 244 ~~~~lp~~l~~~lr 257 (266)
T cd01460 244 DLNQLPSVLSDALR 257 (266)
T ss_pred ChhHhHHHHHHHHH
Confidence 89999998887763
No 212
>PLN02573 pyruvate decarboxylase
Probab=92.08 E-value=1.2 Score=46.36 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=70.1
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccc---cCccCcc---chhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFRSD---GAVV 182 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~~~~~~---~~~~ 182 (340)
.-+|-|.|... + ..++++..|=|.++ ..-++..|..-+.|||+|.-.-........ ....... +..+
T Consensus 67 ~~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (578)
T PLN02573 67 GYAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 139 (578)
T ss_pred HHHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHH
Confidence 34555665543 4 45677777888886 345677888889999999854332211100 0000001 1234
Q ss_pred hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
.++.+--...+|. +++++...+.+|+..++..+||+.|++-.
T Consensus 140 ~~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 140 CFQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred HhhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 5666666677777 88888889999988888888999998844
No 213
>PRK06154 hypothetical protein; Provisional
Probab=91.81 E-value=1.5 Score=45.50 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=62.0
Q ss_pred eEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHH
Q 019498 127 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 206 (340)
Q Consensus 127 ~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~ 206 (340)
++++..|=|.++ ..-++..|..-+.|||+|+-......... ....+....++.+--...+|+ +++++.+.+
T Consensus 84 v~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~----~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~i 154 (565)
T PRK06154 84 VFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDV----APNFESLRNYRHITKWCEQVT--LPDEVPELM 154 (565)
T ss_pred EEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccC----CCCcchhhhHhhcceeEEECC--CHHHHHHHH
Confidence 344456888886 45668888889999999985432211100 001233456666666677787 899999999
Q ss_pred HHHHHHhHcc-CCCEEEEEEE
Q 019498 207 HAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 207 ~~a~~~~r~~-~~P~lIe~~t 226 (340)
.+|+..++++ .||++|++-.
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHhcCCCceEEEecch
Confidence 9999888875 5899998754
No 214
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=91.74 E-value=1.5 Score=37.97 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=57.6
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHH-HHHHhC--------CCCEEEEEEeCCccccccccCccCc
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRS 177 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal-~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~~ 177 (340)
..++.|.|+|+. +.++++.+.=+.|.. -.+|-+ +.++.+ ++||++++..-+++...++ .+.
T Consensus 55 ~~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t---hs~ 124 (167)
T cd07036 55 GIVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ---HSQ 124 (167)
T ss_pred HHHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh---hhh
Confidence 335666666654 234554433334432 233433 334433 5899999865554433333 223
Q ss_pred cchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 178 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 178 ~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
.++ ...+++ |+.++.-. |+.+....++.+++ .++|+++-
T Consensus 125 ~~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 125 SLE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred hHH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 333 455554 67666655 89999999998886 46899873
No 215
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=91.72 E-value=1.2 Score=46.71 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=61.5
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc-cccccCccCccchhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 185 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 185 (340)
..+++|.|+|++ .-++++++ =+.|.+=.+-+-.+.++..++||++++...++.. ..++.. ...|++-+..
T Consensus 363 ~~vg~AaGlA~~-----G~~Pvv~~--~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~dia~lr~ 433 (617)
T TIGR00204 363 HAVTFAAGMAIE-----GYKPFVAI--YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFDISYLRC 433 (617)
T ss_pred HHHHHHHHHHHC-----CCEEEEEe--cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchHHHHHhc
Confidence 345667776653 23444444 4556542232334667889999999998777632 122222 2234443322
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
--|+.++.-- |+.++...++.|++. .++|++|-.
T Consensus 434 iPgl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 434 IPNMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCCcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 2366666555 899999999988852 348998844
No 216
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=91.24 E-value=1.6 Score=44.17 Aligned_cols=101 Identities=20% Similarity=0.160 Sum_probs=61.0
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEE-CCcccCcchHHHHHHHHH--------hCCCCEEEEEEeCCccccccccCccC
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFR 176 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~--------~~~Lpvi~vv~nN~~~~~~~~~~~~~ 176 (340)
...+++|+|+|++ .-++++.+. .+=... .+-+-.|.++ .+++||+|+..|-++..... +++
T Consensus 199 q~~vg~AaGlA~~-----G~rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs 268 (464)
T PRK11892 199 HGFAGIGVGAAFA-----GLKPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHS 268 (464)
T ss_pred HHHHHHHHHHHhC-----CCEEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccc
Confidence 3345677777764 234555453 232221 2333446666 78999999988766544222 233
Q ss_pred ccchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 177 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 177 ~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
..++ ...+.+ |+.++.-- |+.+....++.+++ .++|++|-
T Consensus 269 ~~d~-a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 269 QDYA-AWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred cCHH-HHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 3343 444443 77766655 88999999998885 47899863
No 217
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=91.15 E-value=1.7 Score=44.46 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=69.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +...++++..|=|..+ ..-++..|..-+.|||+|+-.-.+.......-+ ...|....++.+-
T Consensus 61 ~~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~t 133 (530)
T PRK07092 61 VGMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccc
Confidence 44677776543 3444555556777774 456788888899999988754332211100000 1124455666664
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccC-CCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~-~P~lIe~~t 226 (340)
-...+|. +++++.+.+.+|+..++..+ ||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 134 KWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred cceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 4455665 89999999999998887764 799998753
No 218
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.74 E-value=0.98 Score=45.08 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=64.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......|..+.++.+-
T Consensus 51 ~~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (432)
T TIGR00173 51 GFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYV 122 (432)
T ss_pred HHHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhcc
Confidence 3456666654 34445666666888876 45567788888999999974432111110 0011124555666665
Q ss_pred ceEEEEcCCCHHH------HHHHHHHHHHHhHcc-CCCEEEEEEE
Q 019498 189 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~------v~~a~~~a~~~~r~~-~~P~lIe~~t 226 (340)
-...+|. ++.+ +...+.+|+..+..+ +||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 123 RWSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred ceeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 5566665 3333 666677777666564 4899998853
No 219
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.50 E-value=2.5 Score=43.93 Aligned_cols=108 Identities=18% Similarity=0.030 Sum_probs=67.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ......|....++.+-
T Consensus 54 ~~mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~t 125 (578)
T PRK06546 54 AFAAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECS 125 (578)
T ss_pred HHHHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhcccce
Confidence 34556665542 2333444455777776 33557888889999999975322111100 0011123445666555
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
-...+|. +++++...+.+|+..+....||+.|++-.
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 126 GYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 5566777 88899999999998888778999998753
No 220
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=90.29 E-value=1.9 Score=45.51 Aligned_cols=101 Identities=17% Similarity=0.089 Sum_probs=63.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc--cccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+. +.-.++++.+ ..|.+ ..++++.+++..++||++|....+++. .+++. .+..|++-+ ++
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~l-r~ 478 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLASL-RA 478 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHHH-hc
Confidence 3556666652 1223333322 35544 567888899999999999998776654 33333 233344433 33
Q ss_pred c-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 187 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 187 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
. |+.++.-- |..++..+++.+++ ..++|++|-.
T Consensus 479 iPn~~v~~Pa--D~~E~~~~~~~a~~---~~~gP~~irl 512 (653)
T TIGR00232 479 IPNLSVWRPC--DGNETAAAWKYALE---SQDGPTALIL 512 (653)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHh---cCCCcEEEEE
Confidence 3 66666655 89999999998884 2578998854
No 221
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.44 E-value=2.4 Score=44.15 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=61.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHH-HHHHHHhCCCCEEEEEEeCCccc-cccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~E-al~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+. . .++|+.+ =..|.+ ..++ -.+.++..++||+++....++.. .+++.. ...|++-+..-
T Consensus 334 vg~A~GlA~~-----G-~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE-----G-LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC-----C-CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 4567777663 2 3344433 445644 3444 45557889999999998776532 122221 22344433333
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
-|+.++.-- |+.++..+++.|++. .++|++|-.
T Consensus 404 P~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 477777655 899999999998852 368988754
No 222
>PTZ00089 transketolase; Provisional
Probab=89.35 E-value=2.4 Score=44.84 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=65.0
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccc--ccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+. +.-+++++.+. .|.+ -.++.+..++..+|||+||+...+.+.. +++.. +..|++- .++
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~-lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLAL-LRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHH-Hhc
Confidence 4566666652 12245555553 7765 6778899999999999999988776642 33322 2233432 233
Q ss_pred c-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 187 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 187 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+ |+.+++-- |..++..+++.|+. ..++|+.|-.
T Consensus 486 iPn~~V~~Pa--D~~E~~~~l~~al~---~~~gP~~irl 519 (661)
T PTZ00089 486 TPNLLVIRPA--DGTETSGAYALALA---NAKTPTILCL 519 (661)
T ss_pred CCCcEEEecC--CHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 2 55555544 88999999988875 2568998865
No 223
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.06 E-value=2.5 Score=44.49 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHH-HHHHhCCCCEEEEEEeCCcc-ccccccCccCccchhhhhh
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGR 185 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal-~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~~~~~~~~~~a~ 185 (340)
.+++|.|+|++ .-+++++++. .|.+ -.++.+ +.++..++||+++++.-++. ..+++.. ...|++-+..
T Consensus 373 mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~dia~lr~ 442 (641)
T PRK12571 373 AVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAFDLAFLTN 442 (641)
T ss_pred HHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccHHHHHHhc
Confidence 34567777652 2344555543 4544 445555 56888999999999766653 2223222 2234443333
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
--|+.++.-- |+.+++.+++.|+++ .++|++|-..
T Consensus 443 iPnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 443 LPNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 2366666655 899999999988852 4799988553
No 224
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.95 E-value=2.3 Score=44.28 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
.+++|.|+|+. + -+++++.+.+ |.+-.+-+-.+.++..++||+|++..-++.-.+++.. ...|++-+..--
T Consensus 332 ~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Dia~lr~iP 402 (581)
T PRK12315 332 SVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDIPMISNIP 402 (581)
T ss_pred HHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHHHHHhcCC
Confidence 34566666653 2 3455555544 3322222234456888999999998766654333332 223443332223
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
|+.++.-- |+.++..+++.|++ ..++|++|-.
T Consensus 403 nl~V~~P~--d~~e~~~~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLAPT--TKEELIAMLEWALT---QHEHPVAIRV 434 (581)
T ss_pred CCEEEecC--CHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 66555544 89999999998885 2368998855
No 225
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.32 E-value=3 Score=43.92 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=57.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc-cccccCccCccchhhhhhhc
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~a~ 187 (340)
+++|.|+|+. .-+++++++ +.|.+-.+-+-.+.++..++||+|++...++.. .+++.. ...|++-...--
T Consensus 412 Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Dia~lr~iP 482 (641)
T PLN02234 412 VTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDVTFMACLP 482 (641)
T ss_pred HHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHHHHHhcCC
Confidence 4556666653 234455553 344332233334567889999999998877531 222222 122333221223
Q ss_pred CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEE
Q 019498 188 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 222 (340)
Q Consensus 188 G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lI 222 (340)
|+.++.-- |+.++..+++.|... .++|++|
T Consensus 483 nl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 483 NMIVMAPS--DEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE
Confidence 66666554 899999998887652 4589887
No 226
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.18 E-value=3.4 Score=43.82 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc-cccccCccCccchhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 185 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 185 (340)
+.++.|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|++..-++.. .+++. ....|++-+..
T Consensus 434 haVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH--~g~~Dia~lr~ 504 (701)
T PLN02225 434 HAVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQ--CGAFDIAFMSS 504 (701)
T ss_pred HHHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccc--cccHHHHHHhc
Confidence 345566666653 346677777 366542333444557889999999998755422 12222 12334433322
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
--|+.++.-- |..++...++.|.. ..++|++|-.
T Consensus 505 IPnm~V~aPs--D~~El~~mL~~A~~---~~~gPv~IR~ 538 (701)
T PLN02225 505 LPNMIAMAPA--DEDELVNMVATAAY---VTDRPVCFRF 538 (701)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 2366666544 89999999988774 2468998854
No 227
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=88.02 E-value=4.4 Score=40.24 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc-Cc
Q 019498 111 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GV 189 (340)
Q Consensus 111 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~-G~ 189 (340)
+|-|.|.+. ++..+|++..|-|+++ +..-|.-|-.-+.|+|++- .+..-+.-..+.+...|+...-+++ -|
T Consensus 144 aAegYaR~s---gKPGvvlvTSGPGATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKw 215 (675)
T KOG4166|consen 144 AAEGYARSS---GKPGVVLVTSGPGATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKW 215 (675)
T ss_pred hhhhhhhhc---CCCcEEEEecCCCccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeecccee
Confidence 455666554 5678999999999997 3344666667788987653 1111110011122233455555555 34
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEE
Q 019498 190 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 224 (340)
Q Consensus 190 ~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~ 224 (340)
.+. |. |++++..-+.+|++.+-++ .||+|+++
T Consensus 216 Nvm-Vk--dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NVM-VK--DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred hee-ee--cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 333 44 7899999999999887765 48999875
No 228
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=87.89 E-value=5 Score=39.29 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
..++.++|++++- .+..-+..|.|-. -.+|.|-+|+-..+|+++++.+............ ...|+...-.+
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~-dq~D~~~~r~~ 128 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG-DQSDLMAARDT 128 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc-cHHHHHHHHcc
Confidence 4478889988872 3445555566655 4689999999999999999888765443221111 11233322222
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
||+.+... |+.+.+...-.|...+.+..-|+++-..-++.
T Consensus 129 -g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~ 168 (365)
T COG0674 129 -GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA 168 (365)
T ss_pred -CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh
Confidence 88888777 88888877777887777778899988777654
No 229
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=87.81 E-value=3.7 Score=43.54 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=61.4
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc-cccccCccCccchhhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGR 185 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~-~~~~~~~~~~~~~~~~a~ 185 (340)
..+++|.|+|+. .-+++++++. .|.+=.+-+-.+-++..++||+|++...++.. .+++.. ...|++-+..
T Consensus 409 ~~vg~AaGLA~~-----G~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~Dia~lr~ 479 (677)
T PLN02582 409 HAVTFAAGLACE-----GLKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDVTYMAC 479 (677)
T ss_pred HHHHHHHHHHHC-----CCeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHHHHHHhc
Confidence 334566666653 2455666543 45432233345667889999999998776532 222221 1233332222
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
--|+.++.-- |..++..++..|+.. .++|++|-.
T Consensus 480 iPnl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 480 LPNMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 2366666555 899999999888852 458998853
No 230
>PRK05899 transketolase; Reviewed
Probab=87.25 E-value=4.8 Score=42.27 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc--cccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|+++|....+++. .+++. .+..|++-+..-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHhC
Confidence 4566666653 2133344322 3554 4677888888889999999998877654 33433 223344433332
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
-|+.++.-- |+.++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~P~--d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRPA--DANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeCC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 366665544 899999999988862 379998866
No 231
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=86.64 E-value=6.4 Score=38.43 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=58.0
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEE-CCcccCcchHHHHHHHHHhCC--------CCEEEEEEeCCcccc-ccccCcc
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAIS-TPISDQF 175 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~-GDG~~~~G~~~Eal~~A~~~~--------Lpvi~vv~nN~~~~~-~~~~~~~ 175 (340)
...++.|.|+|++ ..++++++. .|=.. =.+-+-.+.++.++ +||+++..+ +.... .++.
T Consensus 84 q~~vg~AaGlA~~-----G~~P~v~~~~~~f~~--ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH--- 152 (356)
T PLN02683 84 AGFTGIGVGAAYA-----GLKPVVEFMTFNFSM--QAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQH--- 152 (356)
T ss_pred HHHHHHHHHHHHC-----CCEEEEEEehhhHHH--HHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCcc---
Confidence 4446677777764 234454443 32221 12223345566555 899999876 43222 2222
Q ss_pred Cccchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 176 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 176 ~~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
...+ ....++. |+.++.-- |+.++..+++.|++ .++|++|-
T Consensus 153 ~~~~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir 194 (356)
T PLN02683 153 SQCF-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFL 194 (356)
T ss_pred ccCH-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 2222 3455554 77777655 89999999998885 46899885
No 232
>PLN02790 transketolase
Probab=86.55 E-value=4.4 Score=42.86 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHhhhcC-CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccc--cccccCccCccchhhhh
Q 019498 108 QLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 184 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~-~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a 184 (340)
.+++|.|+|+. + .-+++++.+ ..|.. ...+++..++..+|||+||+...+.+. ++++.. +..|++-+-
T Consensus 404 mv~~AaGlA~~----G~G~~P~~~tf--~~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq--~iedla~lR 474 (654)
T PLN02790 404 MGAICNGIALH----SSGLIPYCATF--FVFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ--PIEHLASLR 474 (654)
T ss_pred HHHHHHHHHhc----CCCcEEEEEec--HHHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc--cHHHHHHhc
Confidence 34566676653 1 123444433 12332 466788889999999999998877664 233322 223333322
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 185 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.--|+.+++-- |..++..+++.|++ ..++|+.|-.
T Consensus 475 ~iPnl~V~~Pa--D~~E~~~~l~~al~---~~~gP~~irl 509 (654)
T PLN02790 475 AMPNILMLRPA--DGNETAGAYKVAVT---NRKRPTVLAL 509 (654)
T ss_pred CCCCcEEEeCC--CHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 21255555544 88999999988875 2468988854
No 233
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=85.20 E-value=3.1 Score=48.63 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
.-+|.|.|.+. +...+++|..|=|.++ ..-++..|..-+.|+|+|.-+-.........-| .-|....++.+-
T Consensus 352 afmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvt 423 (1655)
T PLN02980 352 AFHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFV 423 (1655)
T ss_pred HHHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhh
Confidence 44677777653 4455666777887775 677788999999999999855432211111111 124455666665
Q ss_pred ceEEEEcCCCHHH------HHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 189 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 189 ~~~~~VdG~d~~~------v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
-...+|. ++++ +..++++|+..++.+ .||+.|++-
T Consensus 424 K~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 5556664 4444 346777777777666 489999986
No 234
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=84.96 E-value=6.7 Score=37.78 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=54.9
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEEC-CcccCcchHHHHHHHHHhC--------CCCEEEEEEeCCccccccccCccC
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFG-DGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFR 176 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~G-DG~~~~G~~~Eal~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~ 176 (340)
...++.|.|+|++ ..++++++.. +=.. =.+-+-.+-++.. ++|+++....-.++...++..+
T Consensus 61 ~~~vg~AaGlA~~-----G~~Piv~~~~~~f~~--ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~-- 131 (327)
T PRK09212 61 HGFAGLAVGAAFA-----GLRPIVEFMTFNFSM--QAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQ-- 131 (327)
T ss_pred HHHHHHHHHHHHc-----CCeeEEEeehhhHHH--HHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCccccc--
Confidence 3445667777764 2345555443 2111 1111222333444 4677777654333333333322
Q ss_pred ccchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 177 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 177 ~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
.+....++. |+.++.-. |+.++..+++.|.+ .++|++|--.
T Consensus 132 --~~ea~~r~iP~l~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~~~ 173 (327)
T PRK09212 132 --CYAAWYSHIPGLKVVAPY--FAADCKGLLKTAIR----DPNPVIFLEN 173 (327)
T ss_pred --CHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEEEc
Confidence 233444443 66666544 89999999998885 4789988443
No 235
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=84.40 E-value=4 Score=42.44 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCCEEEEEEeCCccc--cccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCC
Q 019498 141 DFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 218 (340)
Q Consensus 141 ~~~Eal~~A~~~~Lpvi~vv~nN~~~~--~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~ 218 (340)
...-++.+|+..++|+++|.....++. ++|+.+ +.+.++.+=.-.|+.+++-- |..+...|.+.|+++ .++
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHq--PiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~g 512 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDG 512 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCC--cHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCC
Confidence 345679999999999999999998766 444432 33344443333588888844 566788888888874 689
Q ss_pred CEEEEEE
Q 019498 219 PILIEAL 225 (340)
Q Consensus 219 P~lIe~~ 225 (340)
|++|...
T Consensus 513 Pt~Lilt 519 (663)
T COG0021 513 PTALILT 519 (663)
T ss_pred CeEEEEe
Confidence 9998764
No 236
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=84.20 E-value=5.2 Score=33.79 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=65.5
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHH-HHHhCCCCEEEEEEeCCccccccccCccC-ccchhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 184 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~-~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~-~~~~~~~a 184 (340)
-|++++.|+.+|- +...+.+ -.-++. ...-+|. +-..+++|++.++..-++-... .+.|.+ ..-+-+..
T Consensus 53 eg~GIcAGa~lAG-----kk~ailm-QnsGlG--NsiNal~SL~~ty~iPl~ml~ShRG~~~E~-i~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAG-----KKPAILM-QNSGLG--NSINALASLYVTYKIPLLMLASHRGVLKEG-IEAQVPMGRALPKIL 123 (172)
T ss_pred cceeeehhhhhcC-----CCcEEEE-eccCcc--hHHHHHHHHHHHhccchhhhhhccchhhcC-CccccccchhhHHHH
Confidence 3466788888874 2223333 222232 2222222 2346889998888776653221 112222 22345677
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 185 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+.+++|.+++. .+++-++.+..+...+-+..+|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 88899999988 688888888888888777889987654
No 237
>PRK12753 transketolase; Reviewed
Probab=84.15 E-value=7.2 Score=41.31 Aligned_cols=102 Identities=17% Similarity=0.035 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccc--ccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~--~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||++|....+++.. +++. .+..|++- .++
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~TH--q~iedla~-lR~ 484 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTH--QPVEQLAS-LRL 484 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCccc--ccHHHHHH-Hhc
Confidence 4566677652 1223444444 36655 7788899999999999999888887653 3322 22334432 233
Q ss_pred c-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 187 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 187 ~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
. |+.+++-- |..++..++..|++. .++|+.|-..
T Consensus 485 iPn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl~ 519 (663)
T PRK12753 485 TPNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALILS 519 (663)
T ss_pred CCCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEec
Confidence 2 66666544 888999999888852 4789887653
No 238
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=82.71 E-value=9.4 Score=37.23 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEE-ECCcccCcchHHHHHHHHHh--------CCCCEEEEEEeCCccccccccCccCc
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRS 177 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~-~GDG~~~~G~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~~~~~~~~~~ 177 (340)
..+++|.|+|++ ..++++++ +.| |.+-.+-+-.+.++. +++|++++.....++..+++..+
T Consensus 93 ~~vg~AaGlA~~-----G~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~--- 162 (355)
T PTZ00182 93 GFAGFAIGAAMN-----GLRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ--- 162 (355)
T ss_pred HHHHHHHHHHhC-----CCEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc---
Confidence 345667777764 23444443 343 322222232334444 34577666544444444444322
Q ss_pred cchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 178 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 178 ~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
.+....+++ |+.++.-- |+.++..+++.+++ .++|++|-
T Consensus 163 -~~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 163 -SFEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred -hHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 122444443 67666655 89999999998886 47899773
No 239
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=82.14 E-value=9.8 Score=39.07 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=59.7
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCcccc---ccccCcc---Cccc
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS---TPISDQF---RSDG 179 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~---~~~~~~~---~~~~ 179 (340)
....-+|-|.|.+. + ..++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....... ...+
T Consensus 49 ~~A~~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~ 121 (539)
T TIGR03393 49 LNAAYAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRH 121 (539)
T ss_pred ccHHHHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHH
Confidence 33445666666553 3 24566677988886 345577788889999999853322100 0000000 0112
Q ss_pred hhhhhhhcCceEEEEcCCC-HHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 180 AVVKGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG~d-~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
+.+.++..--....++-.+ +..+.++++.|+. .++|++|++-.
T Consensus 122 ~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~ 165 (539)
T TIGR03393 122 FYRMAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPV 165 (539)
T ss_pred HHHHhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEecc
Confidence 2334443332233333334 5666666666664 56899998864
No 240
>PRK12754 transketolase; Reviewed
Probab=81.35 E-value=10 Score=40.15 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
+++|.|+|+. +.-.+.++.+ ..|.. ..++.+.+++..++||++|....+++.........+..|++-+-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 4566676652 1122333333 35654 788899999999999999998888766322222223334443222235
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+.+++-- |..++..+++.++++ .++|+.|-+
T Consensus 488 ~~V~~Pa--D~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRPC--DQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecCC--CHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 6666544 888999998888863 468997654
No 241
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=79.79 E-value=16 Score=35.23 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=52.3
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHH-HHHHhC--------CCCEEEEEEeCCccccccccCccC
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFR 176 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal-~~A~~~--------~Lpvi~vv~nN~~~~~~~~~~~~~ 176 (340)
...++.|.|+|++ ..+++++.+.---++ -.+|-+ +-++.+ ++|++++.-.-.+....++..+
T Consensus 61 q~~vg~AaGlA~~-----G~~pvv~~~~~~f~~--ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~-- 131 (327)
T CHL00144 61 NSFTGMAIGAAMT-----GLRPIVEGMNMGFLL--LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQ-- 131 (327)
T ss_pred HHHHHHHHHHHHC-----CCEEEEEeehhhHHH--HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccc--
Confidence 3445667777764 234444434311111 223322 333433 5677776321112122232211
Q ss_pred ccchhhhhhhc-CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 177 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 177 ~~~~~~~a~a~-G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
.+....+++ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 --~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 132 --RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred --cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 233445443 66666554 89999999988875 47898874
No 242
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=78.42 E-value=23 Score=30.15 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=55.3
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCC-CCEEEEEEe-CCccccccccCccCccchhhhhhh
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGRA 186 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lpvi~vv~n-N~~~~~~~~~~~~~~~~~~~~a~a 186 (340)
+++|.|+|+. +. ++++++... |.. ...+.+.+...++ +|+|+.... ..++...++.. +..++.-+..-
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~~~~~~i 131 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHHHHHhcC
Confidence 4556666654 33 555555533 322 3566777777776 555555533 44444333222 22233322222
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
-|+.++. -.|+.++...++.+++ ..++|.+|-+
T Consensus 132 P~~~v~~--P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 132 PGLKVVA--PSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred CCcEEEe--cCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 2455444 4489999999999885 3468977743
No 243
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=76.41 E-value=5.3 Score=24.48 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSVR 283 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~~ 283 (340)
+++..++. |.+.|++|++|..+.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 34555655 56789999999998887753
No 244
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=74.26 E-value=18 Score=34.35 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=64.1
Q ss_pred cccCccccc-hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHH-HhCCCCEEEEEEeCCccccccccCccC
Q 019498 99 FTVSSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEAPVIFICRNNGWAISTPISDQFR 176 (340)
Q Consensus 99 ~~~~g~lG~-~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A-~~~~Lpvi~vv~nN~~~~~~~~~~~~~ 176 (340)
+.+.|+..+ .++.|.|.|++- ..+.++ +=+.|..+-.||=+..+ ...+|||-+|+.+-++...........
T Consensus 51 ~~NvGIaEQ~mvg~AAGLA~~G-----k~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~ 123 (312)
T COG3958 51 FFNVGIAEQDMVGTAAGLALAG-----KKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQA 123 (312)
T ss_pred heecchHHHHHHHHHHHHHhcC-----CCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchh
Confidence 334554443 346777777763 233333 44677776777766544 566789999999988654321111112
Q ss_pred ccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 177 SDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 177 ~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+.+.|---|+|-.. +.-.|..+..+++..+.+ .+||+-+-.
T Consensus 124 ---~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~----~~GP~Y~Rl 165 (312)
T COG3958 124 ---LEDIAIMRGLPNMTVIAPADAVETRAILDQIAD----YKGPVYMRL 165 (312)
T ss_pred ---HHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh----cCCCEEEEe
Confidence 33333333444433 244466677777766665 589987743
No 245
>PRK11032 hypothetical protein; Provisional
Probab=73.93 E-value=11 Score=32.59 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCccH-H-----H--HHHHHHHHHH
Q 019498 257 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNL-R-----E--QEHSLRETIK 328 (340)
Q Consensus 257 i~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~-~-----~--~~~~l~~~~~ 328 (340)
|...++++.+.|-+|++|++.+.+-++..+++..+...++..+-.++.|-.+..+..|.. . . ....|.+-++
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~~~~i~~slw~~L~~ItDrTqvEw~el~~dl~ 109 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMRVIKESLWQELADITDKTQLEWREVFQDLN 109 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 678899999999999999999999999999999888777655444455533333333331 1 1 1334444444
Q ss_pred hCCCCCCCCC
Q 019498 329 KHPQDYPSNV 338 (340)
Q Consensus 329 ~~p~~~~~~~ 338 (340)
. ...|+++.
T Consensus 110 h-~g~Y~sGE 118 (160)
T PRK11032 110 H-HGVYHSGE 118 (160)
T ss_pred h-cCeeecce
Confidence 3 35666654
No 246
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=72.20 E-value=17 Score=30.09 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 204 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 204 (340)
.++.++++.||.-+ +...+.+..+...++++.+|-....... ...+...++.-|..++.++ .+.+++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56899999999876 4555667777766666555543322111 1246677777888888883 25577777
Q ss_pred HHHH
Q 019498 205 AVHA 208 (340)
Q Consensus 205 a~~~ 208 (340)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 247
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=71.72 E-value=26 Score=36.40 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=54.3
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc-cccccccCccCccchhhhhhhcCceEEEE-cCCCHHH
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALA 201 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~~~~~~~~~~~~a~a~G~~~~~V-dG~d~~~ 201 (340)
.-++||++.. .|-|=..-+-+.=.+..+|||+|+|+..+. +.+.++.... -|++=+. -+|.+.+ --.|.++
T Consensus 381 G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~--fDls~l~---~iPnmvi~aP~de~e 453 (627)
T COG1154 381 GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGL--FDLSFLR---CIPNMVIMAPRDEEE 453 (627)
T ss_pred CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccH--HHHHHHh---cCCCcEEecCCCHHH
Confidence 3456777752 232222233344456789999999998774 4444443321 2333222 3454443 3458999
Q ss_pred HHHHHHHHHHHhHccCCCEEEE
Q 019498 202 IYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 202 v~~a~~~a~~~~r~~~~P~lIe 223 (340)
+...+..|..+ .++|+.|-
T Consensus 454 l~~ml~ta~~~---~~gP~AiR 472 (627)
T COG1154 454 LRQMLYTALAQ---DDGPVAIR 472 (627)
T ss_pred HHHHHHHHHhc---CCCCeEEE
Confidence 99999999875 56899884
No 248
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=71.69 E-value=12 Score=30.14 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=29.0
Q ss_pred ccchhhhhhhcCceEEE--EcCCCH-HHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 177 SDGAVVKGRAYGVRSIR--VDGNDA-LAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 177 ~~~~~~~a~a~G~~~~~--VdG~d~-~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
..++.+.+++.|+..+. |.+.++ .+-..++.++++ +..+|+++.|.+
T Consensus 46 ~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 46 SAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred HHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 34577889999999887 454333 344455666665 467899999965
No 249
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=70.22 E-value=41 Score=31.27 Aligned_cols=97 Identities=21% Similarity=0.125 Sum_probs=57.2
Q ss_pred cccchhhHHHHHHHHhhhcCCC-CeEEEEECCcccC----cchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCc
Q 019498 104 TIATQLPHAVGAAYALKMDRKD-ACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRS 177 (340)
Q Consensus 104 ~lG~~lp~A~G~A~a~k~~~~~-~~vv~~~GDG~~~----~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~ 177 (340)
+|..+|-.|..+..-.+.++|+ +.+++++-||=.+ .|...|++..|....+ ++.++|.|-. .+. ...
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~~ 227 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VRL 227 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-ccc
Confidence 4444444444433333334444 5788999999874 4456788888877665 5534433321 111 111
Q ss_pred cchhhhhhhcCceEEEEcCCCHHHHHHHHH
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALAIYSAVH 207 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~ 207 (340)
.-..+.|..+|.+++..+...-..+..+.+
T Consensus 228 g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r 257 (261)
T COG1240 228 GLAEEIARASGGEYYHLDDLSDDSIVSAVR 257 (261)
T ss_pred cHHHHHHHHhCCeEEecccccchHHHHHHH
Confidence 224568889999999999766666665554
No 250
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=66.84 E-value=8.5 Score=39.67 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCC--CCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 141 DFHAALNFSAVTE--APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 141 ~~~Eal~~A~~~~--Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
.+..+|.-+.+++ ||++++++|..-..+ .+-.+.++.||++.+.||+|.|.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeED---------ipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEED---------IPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCcccc---------cHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 4555677788865 799988887542222 12456789999999999999887654
No 251
>PRK13683 hypothetical protein; Provisional
Probab=64.66 E-value=9.3 Score=29.23 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=30.9
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
.+-+.+.+=+-.|.+++|.-+.+|++ .+.|.+||+.|.+.
T Consensus 12 P~P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~ 51 (87)
T PRK13683 12 PMPISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKV 51 (87)
T ss_pred CcceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCc
Confidence 34455555555688999999999986 57899999999774
No 252
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=64.51 E-value=70 Score=27.79 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=47.0
Q ss_pred CCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 125 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 125 ~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
.+.++++++||+-. .+...+....++..+++|.+|-..+. ..-+.+.|++-|-..+.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35588888898754 33355666677777776644433211 1236678888899999887 888888
Q ss_pred HHHHHH
Q 019498 204 SAVHAA 209 (340)
Q Consensus 204 ~a~~~a 209 (340)
..+.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 777653
No 253
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=63.93 E-value=55 Score=37.20 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=68.9
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
+++++|++.+ +.++.+++.=.++. ..+|.|-.++-..+|+|+++.+-.+.... ..-.....|+ ..++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 6667776554 34555555444443 45788866665688998888764433211 1001112233 3446678
Q ss_pred ceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCC
Q 019498 189 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 233 (340)
Q Consensus 189 ~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs 233 (340)
|..+... ++.++++....|...+.+...|+++-..-+|. +|.
T Consensus 134 ~ivl~s~--svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 134 FAMLASS--SVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred eEEEeCC--CHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 8555544 88888888878877776778899998887765 454
No 254
>PRK13685 hypothetical protein; Provisional
Probab=63.52 E-value=90 Score=29.83 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=50.5
Q ss_pred CeEEEEECCcccCcch-------HHHHHHHHHhCCCCEEEEEEeCCcc-ccccccCc---cCccchhhhhhhcCceEEEE
Q 019498 126 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQ---FRSDGAVVKGRAYGVRSIRV 194 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~-------~~Eal~~A~~~~Lpvi~vv~nN~~~-~~~~~~~~---~~~~~~~~~a~a~G~~~~~V 194 (340)
..+|+++.||.-+.|. ..++.+.+...+++|-.|-.-+..+ +....+.. .....+.+.|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 3466777888888875554333221 11000100 12234677888888888888
Q ss_pred cCCCHHHHHHHHHHH
Q 019498 195 DGNDALAIYSAVHAA 209 (340)
Q Consensus 195 dG~d~~~v~~a~~~a 209 (340)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 7 777777777654
No 255
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=62.31 E-value=18 Score=30.76 Aligned_cols=81 Identities=9% Similarity=0.080 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCcc--------HHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSN--------LREQEHSLRET 326 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~p~~~~~~~~v~~~~~~~--------~~~~~~~l~~~ 326 (340)
+-|...++++.+.|-+|++|++.+.+-++..+++..+.... .+...+++-.+..+..|. .+=.+..|.+-
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~--~~~~~~~~~~lie~slw~~L~~ItDkTqvEw~el~~d 95 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE--LREWLSPDLQLIEESLWDELSSITDKTQVEWAELAQD 95 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH--hhhhccccHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 44677899999999999999999999999999998887665 222333333332222222 11235667777
Q ss_pred HHhCCCCCCCCC
Q 019498 327 IKKHPQDYPSNV 338 (340)
Q Consensus 327 ~~~~p~~~~~~~ 338 (340)
++.++ .|+++.
T Consensus 96 ~~h~g-~Y~sGE 106 (146)
T PF07295_consen 96 LEHHG-VYHSGE 106 (146)
T ss_pred HHhcC-CeecCc
Confidence 66665 566554
No 256
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=60.66 E-value=29 Score=27.62 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=24.8
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 162 (340)
++..++++.-.|... ...+.+..|...+.|+|.|..+
T Consensus 53 ~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 53 PDDLVIIISYSGETR--ELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEESS
T ss_pred ccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeCC
Confidence 455666676666665 4667777777777777666644
No 257
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=59.50 E-value=37 Score=35.01 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe
Q 019498 109 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 109 lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 162 (340)
.-+|-|.|.+. +...++++..|=|.++ ..-++..|...+.|||+|.-.
T Consensus 60 ~~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 60 GFLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 44666666553 3334566666888886 456788888999999999743
No 258
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.99 E-value=26 Score=30.13 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.0
Q ss_pred chhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 179 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 179 ~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
..+--|+|||..++.++|.+-+.+.+.++..+++ -+||..|+..+
T Consensus 22 HV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 22 HVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 4566789999999999998767788888877764 78998887643
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=56.52 E-value=55 Score=33.91 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=60.3
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccc---cC---ccCccchhhhhhhcCce--EEEE-
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD---QFRSDGAVVKGRAYGVR--SIRV- 194 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~---~~---~~~~~~~~~~a~a~G~~--~~~V- 194 (340)
.|-+|+++.+|-+.+. +..|++..|..-+.|+|+-|+-- +.|. +. +....++ ..+.+|-. ++.+
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKi----Dkp~a~pekv~~eL~~~gi--~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKI----DKPGANPEKVKRELLSQGI--VVEDLGGDVQVIPIS 297 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEecc----CCCCCCHHHHHHHHHHcCc--cHHHcCCceeEEEee
Confidence 5678999999988864 68999999999999998777432 1111 00 0001111 12334433 3333
Q ss_pred --cCCCHHHHHHHHHH---HHHHhHccCCC---EEEEEEEecCCCC
Q 019498 195 --DGNDALAIYSAVHA---AREMAIGEGRP---ILIEALTYRVGHH 232 (340)
Q Consensus 195 --dG~d~~~v~~a~~~---a~~~~r~~~~P---~lIe~~t~R~~gH 232 (340)
.|.+...+.+|+-. .++--..-++| ++||..+.+..|-
T Consensus 298 Al~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred cccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccc
Confidence 47888888887642 22211122345 4788777766553
No 260
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.21 E-value=68 Score=25.49 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 162 (340)
++..++++.--|... .+.+++..|...+.|+|.|..|
T Consensus 47 ~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 47 PGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCC
Confidence 334444444444443 3445555555555555555544
No 261
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=51.95 E-value=1.5e+02 Score=25.24 Aligned_cols=70 Identities=24% Similarity=0.162 Sum_probs=41.6
Q ss_pred CeEEEEECCcccCcch--H----HHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCH
Q 019498 126 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~--~----~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 199 (340)
+.+++++.||.-+.|. . .+....+...+++++.|-.. . ......-+.++|+.-|..++.++.-+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~--------~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-G--------RPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-C--------CccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5799999999887543 1 33344455666676554211 0 001112356788888998998885554
Q ss_pred HHHHH
Q 019498 200 LAIYS 204 (340)
Q Consensus 200 ~~v~~ 204 (340)
.++..
T Consensus 170 ~~~~~ 174 (178)
T cd01451 170 DAIAS 174 (178)
T ss_pred HHHHH
Confidence 44443
No 262
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=51.72 E-value=40 Score=36.48 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=48.3
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 200 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~ 200 (340)
+++.||+.|+..- +..+-.+-.+|.+.+.|...|-..+.-....+..+.........+|+.+|....++.|.|+.
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~ 323 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVA 323 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHH
Confidence 5678888777655 34788899999999998755532222111111111111223557899999999999988764
No 263
>PRK10490 sensor protein KdpD; Provisional
Probab=50.09 E-value=55 Score=36.00 Aligned_cols=93 Identities=12% Similarity=-0.035 Sum_probs=53.7
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE-EEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v-v~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
+++.||+.|+ ..++-.+--+..+|.+.+.|+..| |+............. ...+..++|+.+|..+..+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~-~l~~~~~lA~~lGa~~~~~~~~dva~-- 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRR-AILSALRLAQELGAETATLSDPAEEK-- 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCCHHH--
Confidence 3456666665 555667888889999999887444 343322211111111 11123368999999999999988753
Q ss_pred HHHHHHHHHhHccCCCEEEEEE
Q 019498 204 SAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 204 ~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
+ -.+++|..+-..+|--+
T Consensus 327 -~---i~~~A~~~~vt~IViG~ 344 (895)
T PRK10490 327 -A---VLRYAREHNLGKIIIGR 344 (895)
T ss_pred -H---HHHHHHHhCCCEEEECC
Confidence 2 23444444444444433
No 264
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=47.74 E-value=78 Score=28.88 Aligned_cols=70 Identities=7% Similarity=0.011 Sum_probs=43.4
Q ss_pred CEEEEEEeCCccccccccC-ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 155 PVIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 155 pvi~vv~nN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.+.+||.|..|.-..+... ......+.+.++.+|+.+....--+..++.+++++..+.....+..+++-+
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 4677777777753111110 112345788889999999998877888999998876542212234555554
No 265
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.52 E-value=87 Score=24.77 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 162 (340)
++..++++.-.|... .+.+++..|...+.|+|.|..|
T Consensus 46 ~~d~~I~iS~sG~t~--e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSGETA--DTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCCcCCH--HHHHHHHHHHHcCCeEEEEECC
Confidence 344555555555554 3455555555555555555544
No 266
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=42.76 E-value=99 Score=29.26 Aligned_cols=54 Identities=6% Similarity=-0.122 Sum_probs=37.0
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCC-C--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcC
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 196 (340)
+.+++|.+.|-|+. .+++-.+...+ | .++.|+.||. +..++|+.+|+|+..++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 44677778887665 45566665544 4 4677777763 355889999999998753
No 267
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=42.61 E-value=2.2e+02 Score=29.87 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=58.3
Q ss_pred ccchhhHHHHHHHHhhhc-----CCCCeEEEEECCcccCcch---------HHHHHHHHHh---CCCCEEEEEEeCCccc
Q 019498 105 IATQLPHAVGAAYALKMD-----RKDACAVTYFGDGGTSEGD---------FHAALNFSAV---TEAPVIFICRNNGWAI 167 (340)
Q Consensus 105 lG~~lp~A~G~A~a~k~~-----~~~~~vv~~~GDG~~~~G~---------~~Eal~~A~~---~~Lpvi~vv~nN~~~~ 167 (340)
-|.+-|++-|+..|.++. ....++++++-||..+.|. ..+++..|.. .++++++|-.-+.
T Consensus 472 ~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~--- 548 (584)
T PRK13406 472 GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR--- 548 (584)
T ss_pred CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC---
Confidence 456667777776665431 2236899999999987542 2445555444 3455544422111
Q ss_pred cccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHH
Q 019498 168 STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 209 (340)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a 209 (340)
......++|+..|..++.++--+...|..+++.+
T Consensus 549 --------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 --------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred --------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567889999999999877777777766544
No 268
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=42.36 E-value=1.3e+02 Score=27.92 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEECCccc--CcchHHHHHHHHHhC---CCCEEEEEEeC
Q 019498 129 VTYFGDGGT--SEGDFHAALNFSAVT---EAPVIFICRNN 163 (340)
Q Consensus 129 v~~~GDG~~--~~G~~~Eal~~A~~~---~Lpvi~vv~nN 163 (340)
|.|--||+. ..|.++-++.+|..+ +..++|++.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344455554 456666666666654 23566666543
No 269
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=42.17 E-value=95 Score=31.82 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=71.0
Q ss_pred ccccCccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC----
Q 019498 98 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD---- 173 (340)
Q Consensus 98 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~---- 173 (340)
|+-++||-+...-=|=|+++ .|-.++++-.|=+++. +..||++.|...+.|+|+.++- ++.+...
T Consensus 59 FiDTPGHeAFt~mRaRGa~v------tDIaILVVa~dDGv~p-QTiEAI~hak~a~vP~iVAiNK----iDk~~~np~~v 127 (509)
T COG0532 59 FIDTPGHEAFTAMRARGASV------TDIAILVVAADDGVMP-QTIEAINHAKAAGVPIVVAINK----IDKPEANPDKV 127 (509)
T ss_pred EEcCCcHHHHHHHHhcCCcc------ccEEEEEEEccCCcch-hHHHHHHHHHHCCCCEEEEEec----ccCCCCCHHHH
Confidence 45557776665554545433 3667888888888864 6899999999999999877642 1111000
Q ss_pred --ccCccchhhhhhhcCceEEEE-----cCCCHHHHHHHHH---HHHHHhHccCC---CEEEEEEEecCCCCC
Q 019498 174 --QFRSDGAVVKGRAYGVRSIRV-----DGNDALAIYSAVH---AAREMAIGEGR---PILIEALTYRVGHHT 233 (340)
Q Consensus 174 --~~~~~~~~~~a~a~G~~~~~V-----dG~d~~~v~~a~~---~a~~~~r~~~~---P~lIe~~t~R~~gHs 233 (340)
......+ .++.||-.+..| .|..+.+|..++. +..+.-..-++ -++||++..+..|+.
T Consensus 128 ~~el~~~gl--~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~v 198 (509)
T COG0532 128 KQELQEYGL--VPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPV 198 (509)
T ss_pred HHHHHHcCC--CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCce
Confidence 0000011 123444444443 3666666666553 22221111123 379999999988875
No 270
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.41 E-value=1.5e+02 Score=27.98 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=34.8
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhC-CC--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
+.+++|...|.|+. .++|--+... .+ .|+.|+.|+. +...+|+.+|+|++.++
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVP 144 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEec
Confidence 45677777777554 4566655443 23 5677777653 45566889999998865
No 271
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=41.24 E-value=93 Score=28.35 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=43.2
Q ss_pred CEEEEEEeCCccccccccC--ccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 155 PVIFICRNNGWAISTPISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 155 pvi~vv~nN~~~~~~~~~~--~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
.+.+||.|..|.-..+... ......+++.++.+|+.+....--+..++.+++++..+ ....+.-+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 4677777777754111111 11234578888999999999887788899999987664 112334445443
No 272
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=40.85 E-value=83 Score=32.25 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe-CCcccccc--ccCccCccch---hhhhhhcCceEEEEcCCCH
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTP--ISDQFRSDGA---VVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n-N~~~~~~~--~~~~~~~~~~---~~~a~a~G~~~~~VdG~d~ 199 (340)
..+|+.+|=|+++ ..-.+.-|-..++|||+||-- |.-...+. ........|| .+.++..-+...-++ |.
T Consensus 68 ~a~VtTfgVGeLS---AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELS---ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhh---hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 3577778889886 122233344567999999821 11111110 1112234454 345555455555555 55
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
++-.+-+.+|++.+-...+|+-|.+-+
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~ 169 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPA 169 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeec
Confidence 444444444444444578999998866
No 273
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=40.71 E-value=1.9e+02 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCeEEEEECCcccCcch--HHHHHHHHHhCCCCEEEEEEe
Q 019498 125 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~--~~Eal~~A~~~~Lpvi~vv~n 162 (340)
.+.+|+++.||..+.|. ..++...+...+++|..|-.-
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig 141 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVG 141 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEec
Confidence 35789999999876653 335556666677777555443
No 274
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=40.66 E-value=2.4e+02 Score=31.16 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=69.4
Q ss_pred CccccCccccchhh---HHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc-ccccccc
Q 019498 97 NYFTVSSTIATQLP---HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS 172 (340)
Q Consensus 97 ~~~~~~g~lG~~lp---~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~-~~~~~~~ 172 (340)
+-+...|+--+++- +|.|.|++.. +...++ .++.=..|...-.+|-+..++..++++++|...-+. .......
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~--G~g~iP-f~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVH--DLPMLP-FYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGL 636 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhc--CCCceE-EEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcc
Confidence 33445565555554 5777777642 222122 233344554445678888888888999999877665 2322111
Q ss_pred CccCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHcc--CCCEEEEE
Q 019498 173 DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGE--GRPILIEA 224 (340)
Q Consensus 173 ~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~--~~P~lIe~ 224 (340)
.. .++.+.+-.-.+|... .+-.|..++..+++.+++++-.. ++|+.|-+
T Consensus 637 tH---q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 637 QH---QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred cc---cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 12 2233333333444443 24558889999998888755443 36776644
No 275
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=40.49 E-value=2.4e+02 Score=25.38 Aligned_cols=96 Identities=18% Similarity=0.046 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHhhhcC---CCCeEEEEECCcccCcc-hHH-HHHHHHHhCCCCEEEEEEeCCccccccccCccCccchh
Q 019498 107 TQLPHAVGAAYALKMDR---KDACAVTYFGDGGTSEG-DFH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV 181 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~---~~~~vv~~~GDG~~~~G-~~~-Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~ 181 (340)
.+++.|++.+...--.. -.++||-+.|||--++| ... .+-..+...++ .=|++.|....... ..++.
T Consensus 95 Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi------tINgL~I~~~~~~~--~~~L~ 166 (205)
T PF06707_consen 95 TAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI------TINGLAILDDDPFG--GADLD 166 (205)
T ss_pred chHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCe------EEeeeEecCCCCCc--cccHH
Confidence 33555555554432222 34799999999999999 333 22223333333 11444443222111 11344
Q ss_pred hhhhhc--CceE-EEEcCCCHHHHHHHHHHHH
Q 019498 182 VKGRAY--GVRS-IRVDGNDALAIYSAVHAAR 210 (340)
Q Consensus 182 ~~a~a~--G~~~-~~VdG~d~~~v~~a~~~a~ 210 (340)
...+.. |-|+ +.+...+.++..+|+++-+
T Consensus 167 ~yy~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 167 AYYRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HHHhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 433332 3333 3334447788888887654
No 276
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=40.28 E-value=47 Score=22.73 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=10.8
Q ss_pred CCChHHHHHHHh
Q 019498 241 YRPVDEIEWWRT 252 (340)
Q Consensus 241 Yr~~~e~~~~~~ 252 (340)
||+.+|+..|..
T Consensus 21 ~RT~dEI~~W~~ 32 (51)
T PF06945_consen 21 GRTLDEIRDWKS 32 (51)
T ss_pred CCcHHHHHHHhh
Confidence 899999999973
No 277
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.89 E-value=71 Score=25.54 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
+++..++++.--|... .+.+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 3567788888888876 578889999999999888876543
No 278
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=39.57 E-value=2.4e+02 Score=24.53 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.6
Q ss_pred CCeEEEEECCcccC-cchHHHHHHHHHhCCCCEEEEEE
Q 019498 125 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 125 ~~~vv~~~GDG~~~-~G~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
-++.+.++|.|... ....-+...+|..+++|++.-..
T Consensus 34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 35578888999986 65667778899999999876554
No 279
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=39.39 E-value=1.7e+02 Score=27.28 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=37.3
Q ss_pred hhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecC
Q 019498 180 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 229 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~ 229 (340)
+...++.+|+........|+++..+.+++.++ .+.|++|-+.+|=+
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~~l 100 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMYYL 100 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccccC
Confidence 44677779999997777799999999999887 46799999887543
No 280
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=39.15 E-value=1.1e+02 Score=27.42 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=52.4
Q ss_pred hcCCCCeEEEEECCccc--CcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 121 MDRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 121 ~~~~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
+..|+.+.....=||+. -.|..--++.+|..-+| |.-+||+= ..........+++.++|+-+|++.++++
T Consensus 120 f~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi-----~~~dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEI-----MNDDGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred cCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEE-----eCCCccccChHHHHHHHHHcCCcEEEHH
Confidence 34678888888889887 47888889999999999 88777741 1111122345678899999999999876
No 281
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=38.94 E-value=80 Score=21.26 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 019498 257 VTRFRKWIESNGWWNGDIESELRSSVRKQILH 288 (340)
Q Consensus 257 i~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 288 (340)
+..|+..|.+.|+ ++++|++--+..++.+.+
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 3568999999997 999998888887777654
No 282
>PRK06988 putative formyltransferase; Provisional
Probab=38.63 E-value=1.2e+02 Score=28.90 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 128 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 128 vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
-|+|+|.+.+.. .+.++| ...+..++.|+.+..- +.. ......+.++|+..|++++..+
T Consensus 4 kIvf~Gs~~~a~-~~L~~L---~~~~~~i~~Vvt~~d~----~~~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVGV-RCLQVL---LARGVDVALVVTHEDN----PTE-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHHH-HHHHHH---HhCCCCEEEEEcCCCC----Ccc-CcCCCHHHHHHHHcCCcEEccc
Confidence 378889998753 234444 3345677777755321 111 1122357889999999998754
No 283
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=38.48 E-value=85 Score=27.91 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=33.9
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCC--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcC
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 196 (340)
+++|.+.|+|+.-+ .+.+++ ..-.+ -|++||.|+. .....++|+..|+|+..++-
T Consensus 3 ki~vl~sg~gs~~~-~ll~~~---~~~~~~~~I~~vvs~~~------------~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 3 RIVVLASGNGSNLQ-AIIDAC---AAGQLPAEIVAVISDRP------------DAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred eEEEEEcCCChhHH-HHHHHH---HcCCCCcEEEEEEecCc------------cchHHHHHHHcCCCEEEECc
Confidence 47888899988754 233332 22234 3566666653 01245778889999988663
No 284
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.42 E-value=3.6e+02 Score=25.74 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=53.9
Q ss_pred HHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC-ce
Q 019498 112 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG-VR 190 (340)
Q Consensus 112 A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G-~~ 190 (340)
.++.-+..+.+.-.+.++.++|=|+=- | -.=++++|.+.. .+++++=|.-+.. ...+..+..| +.
T Consensus 24 ~~~~~l~~~~k~v~g~~vLITGgg~Gl-G-r~ialefa~rg~--~~vl~Din~~~~~----------etv~~~~~~g~~~ 89 (300)
T KOG1201|consen 24 LIKLLLPKPLKSVSGEIVLITGGGSGL-G-RLIALEFAKRGA--KLVLWDINKQGNE----------ETVKEIRKIGEAK 89 (300)
T ss_pred HHHHhcccchhhccCCEEEEeCCCchH-H-HHHHHHHHHhCC--eEEEEeccccchH----------HHHHHHHhcCcee
Confidence 334434434444456788888877642 3 233577777765 4555554543321 1222222223 66
Q ss_pred EEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 191 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 191 ~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
.+.||=.|.++++...++..+ .-||+-|-
T Consensus 90 ~y~cdis~~eei~~~a~~Vk~----e~G~V~IL 118 (300)
T KOG1201|consen 90 AYTCDISDREEIYRLAKKVKK----EVGDVDIL 118 (300)
T ss_pred EEEecCCCHHHHHHHHHHHHH----hcCCceEE
Confidence 788898899999998887665 34555443
No 285
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.17 E-value=84 Score=25.66 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=25.7
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 163 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 163 (340)
++..++.+.++|+..+ ...+.+..+...+.|++.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4567777777776532 25566777777777877776543
No 286
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=37.45 E-value=74 Score=28.11 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 019498 258 TRFRKWIESNGWWNGDIESELRSSVRKQ 285 (340)
Q Consensus 258 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 285 (340)
..++.-|+++|+++.++++.+.+.+..+
T Consensus 10 ~al~~ll~ekg~~~~~~~~~~~~~~~~~ 37 (188)
T PF02979_consen 10 RALESLLIEKGLITPAEVDRIIETYESR 37 (188)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 5688999999999999999887765543
No 287
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=36.70 E-value=62 Score=24.49 Aligned_cols=37 Identities=5% Similarity=-0.002 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 019498 254 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 290 (340)
Q Consensus 254 ~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~ 290 (340)
++-|..+-+.|++.++++++|.+.+.++-....++|.
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar 51 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKAR 51 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHH
Confidence 5667788899999999999999999887544444443
No 288
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.33 E-value=1.9e+02 Score=28.36 Aligned_cols=113 Identities=19% Similarity=0.063 Sum_probs=56.0
Q ss_pred Ccccc--chhhHHHHHHHHhhhcCCCCeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCcc
Q 019498 102 SSTIA--TQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 178 (340)
Q Consensus 102 ~g~lG--~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~ 178 (340)
+|.+. .+.+-++|.-...+..+..-.|+ +-+.-- .||.-.- ..-....++|+.+|++|--..+. +....
T Consensus 176 sg~Lat~~g~gtal~~i~~a~~~gk~f~V~--v~EsRP~~qG~rlt-a~eL~~~GIpvtlI~Dsa~~~~m-~~~~V---- 247 (363)
T PRK05772 176 AGGLATGTGLGTALAPVKLAKALGMSVSVI--APETRPWLQGSRLT-VYELMEEGIKVTLITDTAVGLVM-YKDMV---- 247 (363)
T ss_pred CcchhhccccccHHHHHHHHHHCCCeEEEE--ECCCCccchhHHHH-HHHHHHCCCCEEEEehhHHHHHH-hhcCC----
Confidence 44543 34566666655544444433444 334332 4564111 11234578999988876432221 11110
Q ss_pred chhhhhhhcCceEEEEcC---CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCC
Q 019498 179 GAVVKGRAYGVRSIRVDG---NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 231 (340)
Q Consensus 179 ~~~~~a~a~G~~~~~VdG---~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~g 231 (340)
|.. -.|...+..|| |.+....-|+ .|. ..+.|+++-+-++.+..
T Consensus 248 d~V----ivGAD~I~~NG~v~NKiGTy~lA~-~Ak----~~~vPfyV~ap~~k~d~ 294 (363)
T PRK05772 248 NNV----MVGADRILRDGHVFNKIGTFKEAV-IAH----ELGIPFYALAPTSTFDL 294 (363)
T ss_pred CEE----EECccEEecCCCEeehhhhHHHHH-HHH----HhCCCEEEEccccccCc
Confidence 110 14777777777 3333222222 122 36799999888776643
No 289
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=35.76 E-value=42 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHH
Q 019498 257 VTRFRKWIESNGWWNGDIESELRSSV 282 (340)
Q Consensus 257 i~~~~~~L~~~g~~~~~~~~~~~~~~ 282 (340)
+..+-.+|+++|++|+++.+.|+.+-
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 45588999999999999999998753
No 290
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=35.49 E-value=3.5e+02 Score=30.14 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=61.0
Q ss_pred cchhhHHHHHHHHhhhcCCCCeEE--EEECCcccC-cchHHHHHHH-HHhCCC--CEEEEEEeCCccccccccCccCccc
Q 019498 106 ATQLPHAVGAAYALKMDRKDACAV--TYFGDGGTS-EGDFHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDG 179 (340)
Q Consensus 106 G~~lp~A~G~A~a~k~~~~~~~vv--~~~GDG~~~-~G~~~Eal~~-A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~ 179 (340)
..-++.++|+|+. +++.++| +-+||=+.. |-.+-+=++. ++.|+- ++|+.+ -.+|....+...+.+...
T Consensus 657 ~a~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~-p~G~~g~g~~hsS~~~E~ 731 (929)
T TIGR00239 657 ESVLGFEYGYATT----SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLL-PHGYEGQGPEHSSGRLER 731 (929)
T ss_pred HHHHHHHHhHHhc----CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEe-cCcCCCCCchhhccCHHH
Confidence 3345666776664 5666534 455654442 1224444566 466664 655443 444555444333323333
Q ss_pred hhhhhhhcCceEEEEcCCCHHHHHHHHH-HHHHHhHccCCCEEEE
Q 019498 180 AVVKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIE 223 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG~d~~~v~~a~~-~a~~~~r~~~~P~lIe 223 (340)
+...+.--||.++... ++.+.+-.++ +|+. ..++|+++-
T Consensus 732 ~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~ 771 (929)
T TIGR00239 732 FLQLAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVM 771 (929)
T ss_pred HHHHhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEe
Confidence 4444444588877777 8999999988 4663 347898774
No 291
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=35.20 E-value=1.4e+02 Score=21.24 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=24.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 019498 260 FRKWIESNGWWNGDIESELRSSVRKQILHA 289 (340)
Q Consensus 260 ~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a 289 (340)
+=+..++.|.+|.++-+.|.+.+....+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445567899999999999998888776654
No 292
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=35.07 E-value=1.3e+02 Score=29.34 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred cchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHcc-CCCEEEEEE
Q 019498 178 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 225 (340)
Q Consensus 178 ~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~-~~P~lIe~~ 225 (340)
.|++..++-.--..++|- .+..+..++++|+.-+|++ .||++|++-
T Consensus 117 vdi~~ia~pv~kwavtv~--epalvp~v~qkafhlmrs~rpgpvlidlp 163 (592)
T COG3960 117 VDIEAIAKPVSKWAVTVR--EPALVPRVLQQAFHLMRSGRPGPVLIDLP 163 (592)
T ss_pred hhHHHhhhhhhhhhhhhc--chhhhHHHHHHHHHHHhcCCCCCeEEecc
Confidence 345555543321223333 6888999999999988886 589999753
No 293
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=34.86 E-value=1.2e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=34.9
Q ss_pred cCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 122 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 122 ~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
..++..++++..-|... .+.+++..|...+.|+|.|..+++
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35778999999999886 688999999999999999987643
No 294
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.60 E-value=86 Score=24.94 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEE
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
+++..++++.-.|... .+.+++..|...+.|+|.|..
T Consensus 42 ~~~dl~I~iS~SG~t~--e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 42 DRKTLVIAVSYSGNTE--ETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCEEEEEECCCCCH--HHHHHHHHHHHCCCEEEEEeC
Confidence 3566788888888876 477888888888888877764
No 295
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=33.88 E-value=1.8e+02 Score=27.41 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=35.7
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCC-C--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcC
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 196 (340)
+.+++|.+.|-|+. .+++--+...+ | .|+.|+.||. +...+|+.+|+|+..++-
T Consensus 84 ~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 45677777776655 45566555443 4 4677777762 345578889999998774
No 296
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=33.64 E-value=48 Score=23.11 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.3
Q ss_pred HHHHHHHCCCCCHHHHHHH
Q 019498 260 FRKWIESNGWWNGDIESEL 278 (340)
Q Consensus 260 ~~~~L~~~g~~~~~~~~~~ 278 (340)
+++-+++.|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5677888999999999876
No 297
>PRK13938 phosphoheptose isomerase; Provisional
Probab=33.55 E-value=1.2e+02 Score=27.00 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=35.7
Q ss_pred hhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 120 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 120 k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
....++..++++..-|... .+.+++..|...+.|+|.+..|.+
T Consensus 109 ~~~~~~DllI~iS~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSM--SVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred hcCCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3446778899999999887 588999999999999999987653
No 298
>PRK06381 threonine synthase; Validated
Probab=33.35 E-value=3.2e+02 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=26.6
Q ss_pred HHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC
Q 019498 148 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 148 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 197 (340)
.|+..++|+++|+..+. ...-.+..++||..++.+++.
T Consensus 81 ~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 81 FARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 45668899988875431 112345778899999999874
No 299
>PRK13936 phosphoheptose isomerase; Provisional
Probab=33.29 E-value=86 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=34.9
Q ss_pred cCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 122 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 122 ~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
..++.+++++...|... .+.+++..|...+.|+|.|..+++
T Consensus 109 ~~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 109 GQPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 35788999999999886 588999999999999999987643
No 300
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.00 E-value=1.7e+02 Score=24.87 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=7.5
Q ss_pred hhhhhhhcCceEEEEc
Q 019498 180 AVVKGRAYGVRSIRVD 195 (340)
Q Consensus 180 ~~~~a~a~G~~~~~Vd 195 (340)
..+.|+..|++++-+.
T Consensus 91 ~~~~ak~~g~~ii~IT 106 (179)
T TIGR03127 91 VAKKAKEIGATVAAIT 106 (179)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 3444444455554443
No 301
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.58 E-value=85 Score=27.86 Aligned_cols=39 Identities=8% Similarity=0.171 Sum_probs=33.7
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 163 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 163 (340)
.++.+++++.+.|... .+.+++..|...+.|+|.|..+.
T Consensus 108 ~~gDvli~iS~SG~s~--~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 108 HAGDVLLAISTRGNSR--DIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCEEEEEeCCC
Confidence 5778999999999986 68899999999999999987554
No 302
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.53 E-value=2.1e+02 Score=25.60 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=33.2
Q ss_pred eEEEEECCcccCcchHHHHHHHHHhCC-C--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcC
Q 019498 127 CAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 127 ~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 196 (340)
++|.+.|-|+- .+++--+...+ + -+++||.||.. ....++|+.+|+++...+-
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~------------~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPG------------CGGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCC------------ChHHHHHHHhCCCEEEecc
Confidence 56777776665 44555544433 4 46777777741 1235678888999887654
No 303
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.40 E-value=86 Score=26.36 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 163 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 163 (340)
+++..++++..-|... .+.+++..|...+.|+|.|..|.
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCC
Confidence 5677899999988876 68899999999999999988654
No 304
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.23 E-value=51 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q 019498 258 TRFRKWIESNGWWNGDIESELRSS 281 (340)
Q Consensus 258 ~~~~~~L~~~g~~~~~~~~~~~~~ 281 (340)
..+..+|+++|++|+++.+.|+.+
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~ 42 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAA 42 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcC
Confidence 558899999999999999988874
No 305
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=32.04 E-value=4.2e+02 Score=29.51 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHhhhcCCCC--eEEEEECCcccC-cchHHHHHHHH-HhCCC--CEEEEEEeCCccccccccCccCccch
Q 019498 107 TQLPHAVGAAYALKMDRKDA--CAVTYFGDGGTS-EGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDGA 180 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~--~vv~~~GDG~~~-~G~~~Eal~~A-~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~ 180 (340)
.-++.++|+|+. +++. ++=+-+||=+.. |-.+-+-++.+ +.|+. ++|+.+- .+|....+...+ ..+
T Consensus 656 ~~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p-~G~~g~g~~hsS---~~~ 727 (924)
T PRK09404 656 AVLGFEYGYSTA----EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP-HGYEGQGPEHSS---ARL 727 (924)
T ss_pred HHHHHHHHHHhc----CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEec-CcCCCCChhhhc---cCH
Confidence 345667777665 4554 444667775542 22355556765 66664 7555443 345443332222 234
Q ss_pred hhhhhhc---CceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 181 VVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 181 ~~~a~a~---G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
......+ |+.++... ++.+.+..|+.++- |..++|+++--
T Consensus 728 E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~--r~~r~Pvv~~~ 770 (924)
T PRK09404 728 ERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQAL--RPFRKPLVVMT 770 (924)
T ss_pred HHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHh--hCCCCCEEEec
Confidence 4443333 88888777 89999988887542 23458987743
No 306
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=32.01 E-value=87 Score=28.96 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=34.6
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
+++.++|.+...|... .+.+++..|...+.|+|.|..|..
T Consensus 117 ~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTP--YVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 5778899999999997 699999999999999998886653
No 307
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=31.85 E-value=3.3e+02 Score=25.11 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHh-CCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEE
Q 019498 116 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 194 (340)
Q Consensus 116 A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~-~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V 194 (340)
.+|..+...+...+.+.-|-.+-.|. .+-+..+.. -++||+. .| |-+. +.-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~--kd--fi~~---------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR--KD--FIID---------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe--ee--ecCC---------HHHHHHHHHcCCCEEEE
Confidence 44444555566788888888776555 455555554 4789873 11 1111 11234455567777776
Q ss_pred cCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEe
Q 019498 195 DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 227 (340)
Q Consensus 195 dG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~ 227 (340)
++.+.. ...+++.+++++..+.-+++|+.+.
T Consensus 140 i~~~l~--~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALD--DEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCC--HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 654411 0223333333333455666666543
No 308
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=31.57 E-value=2.6e+02 Score=24.86 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=44.9
Q ss_pred chHHHHHHHHHh-CCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHH
Q 019498 140 GDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 212 (340)
Q Consensus 140 G~~~Eal~~A~~-~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~ 212 (340)
....|++-.++. ...|+|.++.++ .+...+.+...|+.++.|+|-|+.-+...+.-|..+
T Consensus 63 rd~~e~~~~~~~~~~~piv~lt~~s-------------~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 63 RDIIEALLLASENVARPIVALTAYS-------------DPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred ccHHHHHHHhhcCCCCCEEEEEccC-------------ChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 345666666665 344777777654 245778888999999999999999999999887753
No 309
>PLN02522 ATP citrate (pro-S)-lyase
Probab=31.18 E-value=2.8e+02 Score=29.22 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCCCeEEEEECC-cccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC------ccCccc------hhhhhhhcCc
Q 019498 123 RKDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD------QFRSDG------AVVKGRAYGV 189 (340)
Q Consensus 123 ~~~~~vv~~~GD-G~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~------~~~~~~------~~~~a~a~G~ 189 (340)
.++-.+|++.|. |.-.+-.+.|++.-+. .+-|||.++---.-... +... .....+ +...++..|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~-~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLF-KSEVQFGHAGAKSGGDMESAQAKNKALKDAGA 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccC-ccccccccccccccCCCccHHHHHHHHHHCCC
Confidence 356679999999 8887766766655544 56799887743211000 0000 011112 4455666777
Q ss_pred eEEEEcCCCHHHHHHHHHHHHHHhHc
Q 019498 190 RSIRVDGNDALAIYSAVHAAREMAIG 215 (340)
Q Consensus 190 ~~~~VdG~d~~~v~~a~~~a~~~~r~ 215 (340)
... + +++++.++++++++...+
T Consensus 298 ~vv--~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 298 IVP--T--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred eEe--C--CHHHHHHHHHHHHHHHHh
Confidence 544 5 999999999988876553
No 310
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=30.81 E-value=2.8e+02 Score=24.11 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.5
Q ss_pred EEEEEecCCCCCCCCC
Q 019498 222 IEALTYRVGHHTTSDD 237 (340)
Q Consensus 222 Ie~~t~R~~gHs~~dd 237 (340)
+++++|...+|....+
T Consensus 178 ~~~~~y~ga~HgF~~~ 193 (218)
T PF01738_consen 178 VEVHVYPGAGHGFANP 193 (218)
T ss_dssp EEEEEETT--TTTTST
T ss_pred EEEEECCCCcccccCC
Confidence 6999999999988743
No 311
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.66 E-value=2.2e+02 Score=25.14 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=24.4
Q ss_pred eEEEEECCc-ccCcchHHHHHHHHHhCCCCEEEEE
Q 019498 127 CAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFIC 160 (340)
Q Consensus 127 ~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv 160 (340)
++++|+|++ +..+|.+++....++..++.|-+|.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 666666666 7778888887777777777665553
No 312
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.56 E-value=3.3e+02 Score=24.36 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=47.9
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCC-CC--EEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC---CH
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DA 199 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~-Lp--vi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~---d~ 199 (340)
+.+|.+.|-|+- .+++--|..-+ +| +..|+.||. ...-.++|+.+|++...++-. +-
T Consensus 2 ki~VlaSG~GSN-----lqaiida~~~~~~~a~i~~Visd~~------------~A~~lerA~~~gIpt~~~~~k~~~~r 64 (200)
T COG0299 2 KIAVLASGNGSN-----LQAIIDAIKGGKLDAEIVAVISDKA------------DAYALERAAKAGIPTVVLDRKEFPSR 64 (200)
T ss_pred eEEEEEeCCccc-----HHHHHHHHhcCCCCcEEEEEEeCCC------------CCHHHHHHHHcCCCEEEeccccCCCH
Confidence 457777776665 45566555533 33 566666652 112446888899998877642 33
Q ss_pred HHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 200 LAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 200 ~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
++...++.++++ ..+|=+|.+--
T Consensus 65 ~~~d~~l~~~l~----~~~~dlvvLAG 87 (200)
T COG0299 65 EAFDRALVEALD----EYGPDLVVLAG 87 (200)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEcc
Confidence 556666666664 45676665543
No 313
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=30.49 E-value=3.1e+02 Score=22.55 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=33.9
Q ss_pred eEEEEECCcccCcch--H---HHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHH
Q 019498 127 CAVTYFGDGGTSEGD--F---HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 201 (340)
Q Consensus 127 ~vv~~~GDG~~~~G~--~---~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~ 201 (340)
..++++.||.-+.|. . .+.+..+...+++|..|-..+ .....-+...|+.-+-....++ |..+
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~----------~~~~~~l~~ia~~~~g~~~~~~--~~~~ 165 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD----------NYNEDLMEAIADAGNGNTAYID--NLAE 165 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC----------CcCHHHHHHHHhcCCceEEEeC--CHHH
Confidence 567899999875442 1 222322223334433222211 0111224556665566677777 7777
Q ss_pred HHHH
Q 019498 202 IYSA 205 (340)
Q Consensus 202 v~~a 205 (340)
+.++
T Consensus 166 ~~~~ 169 (170)
T cd01465 166 ARKV 169 (170)
T ss_pred HHhh
Confidence 7654
No 314
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.22 E-value=2.5e+02 Score=21.74 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred cCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCH
Q 019498 137 TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 199 (340)
Q Consensus 137 ~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~ 199 (340)
.++-.+..+..+|..++-++.++-..+.-..............+.+.++..+++...+.+.|+
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 333355666777777777764443222211000000000112345667778888877776665
No 315
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=29.82 E-value=4.5e+02 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=29.4
Q ss_pred hHHHHHH-HHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCC
Q 019498 141 DFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 198 (340)
Q Consensus 141 ~~~Eal~-~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d 198 (340)
..--++. .|+.+++|+++++..+- ...-.+..+.||..++.+++..
T Consensus 63 N~g~alA~~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 63 NTGIGLAMVAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 3333444 45568999988875431 1123356778999999998753
No 316
>PRK07328 histidinol-phosphatase; Provisional
Probab=29.66 E-value=1.4e+02 Score=27.65 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccCCCE
Q 019498 142 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPI 220 (340)
Q Consensus 142 ~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~~P~ 220 (340)
+-+.+..+...+..+ =|+.+++ ..+.....+...+.++++.+|++... -|.|++.+|-..+.+|.+.+++.+=+.
T Consensus 179 ~~~il~~~~~~g~~l--EiNt~~~--r~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~ 254 (269)
T PRK07328 179 YEEALDVIAAAGLAL--EVNTAGL--RKPVGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTE 254 (269)
T ss_pred HHHHHHHHHHcCCEE--EEEchhh--cCCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcE
Confidence 345566666666432 1222222 22222344566799999999998543 588999999888888888887765443
Q ss_pred E
Q 019498 221 L 221 (340)
Q Consensus 221 l 221 (340)
+
T Consensus 255 ~ 255 (269)
T PRK07328 255 T 255 (269)
T ss_pred E
Confidence 3
No 317
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=29.51 E-value=1.7e+02 Score=19.18 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019498 274 IESELRSSVRKQILHALQEA 293 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~a~~~a 293 (340)
+++.+++++.+++...+.++
T Consensus 4 dle~~KqEIL~EvrkEl~K~ 23 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKV 23 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 318
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=29.48 E-value=1.6e+02 Score=31.43 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=24.1
Q ss_pred eEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 127 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 127 ~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
+.++=--||-.. ...|++.|+..|++|||+=
T Consensus 160 VpvVPGTpgPit--t~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 160 VPVVPGTPGPIT--TVEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCccCCCCCCcc--cHHHHHHHHHhcCCcEEEe
Confidence 444445577776 5899999999999999864
No 319
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=28.93 E-value=1e+02 Score=29.06 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhhhc---CCCCeEEEEECCccc--CcchHHHHHHHHH---------hCCCCEEEEEEeC
Q 019498 102 SSTIATQLPHAVGAAYALKMD---RKDACAVTYFGDGGT--SEGDFHAALNFSA---------VTEAPVIFICRNN 163 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~---~~~~~vv~~~GDG~~--~~G~~~Eal~~A~---------~~~Lpvi~vv~nN 163 (340)
..-+|++++.++|..+..... ..+.+.|+|.--|+. |||.+ .=|++|. ..+||.|.|+.|=
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~l-SLMQMaktsaAl~~l~ea~lpyIsVLt~P 205 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGIL-SLMQMAKTSAALKRLSEAGLPYISVLTDP 205 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHH-HHHHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 345677777777776654332 234567777666664 66643 3344443 2578999998763
No 320
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=28.83 E-value=3.2e+02 Score=26.30 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc-CCCHHHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD-GNDALAIY 203 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd-G~d~~~v~ 203 (340)
+.-+++.+ |+.+...+......|++.++..+++++|-- . ....+.++ .+.+-+|....-|| |+|+. +.
T Consensus 63 g~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~------~y~~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~ 131 (323)
T COG2515 63 GADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A------NYLLNGNL-LLSKLMGAEVRAVDAGTDIG-IN 131 (323)
T ss_pred CCcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c------ccccccch-hhhhhcCceEEEecCCCChh-hc
Confidence 33355554 577666777778888999999999998743 0 01111222 23445799998886 56663 33
Q ss_pred HHHHHHHHHhH-ccCCCEEEEEEEecCCC-CCCCCCCCCC-CChHHHHHHH
Q 019498 204 SAVHAAREMAI-GEGRPILIEALTYRVGH-HTTSDDSTKY-RPVDEIEWWR 251 (340)
Q Consensus 204 ~a~~~a~~~~r-~~~~P~lIe~~t~R~~g-Hs~~dd~~~Y-r~~~e~~~~~ 251 (340)
.-++...+.++ ++++|.+|-. +| |+.+. -.| |-..|+..|.
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~-----GG~~~~g~--lGyv~~a~Ei~~Q~ 175 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPE-----GGSSPLGA--LGYVRLALEIAEQA 175 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEecc-----CCcCcccc--ccHHHHHHHHHHHH
Confidence 33344333333 4778988843 44 33221 234 3455676665
No 321
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=28.82 E-value=1.2e+02 Score=26.98 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=46.6
Q ss_pred CCCeEEEEECCccc--CcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 124 KDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 124 ~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
|..+......+|++ ..|..--++.++..-++ |+-++|+= ........+.+++.++|+.+|++.+.++
T Consensus 119 PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~ei-----l~~dG~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 119 PGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEI-----LDDDGDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp EEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEB-----BETTSSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEE-----eCCCCCcCCHHHHHHHHHHcCCcEEEHH
Confidence 55667777778887 46888889999999999 88666641 1111223345678889999999999876
No 322
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=28.80 E-value=2.1e+02 Score=28.59 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=42.3
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 204 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~~ 204 (340)
+.++++.+||-+.. .-.++++.++.+++++-+++.+.. -...+..+|..++.|+| +.++..+
T Consensus 127 ~~I~~ASSGnTgAs------~aaya~rag~~v~Vl~P~g~vs~~-----------k~~q~~~~ga~~i~v~G-~fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGAS------AAAYAARAGLKVFVLYPKGKVSPG-----------KLAQMLTLGAHVIAVDG-NFDDAQE 188 (411)
T ss_pred CEEEEeCCchHHHH------HHHHhccCCCeEEEEecCCCCCHH-----------HHHHHHhcCCEEEEEcC-cHHHHHH
Confidence 56677777765522 255788888988777755443211 11233456778888887 4556666
Q ss_pred HHHHHHH
Q 019498 205 AVHAARE 211 (340)
Q Consensus 205 a~~~a~~ 211 (340)
.++++.+
T Consensus 189 ~vk~~~~ 195 (411)
T COG0498 189 LVKEAAN 195 (411)
T ss_pred HHHHHHh
Confidence 6666654
No 323
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=28.79 E-value=63 Score=25.24 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHH
Q 019498 256 PVTRFRKWIESNGWWNGDIESELRSS 281 (340)
Q Consensus 256 pi~~~~~~L~~~g~~~~~~~~~~~~~ 281 (340)
+...+.++|.++|++|+++.+.|+++
T Consensus 22 ~~~~v~~~L~~~gIlT~~~~e~I~a~ 47 (94)
T cd08327 22 VDGLVIQYLYQEGILTESHVEEIESQ 47 (94)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 33447789999999999999999874
No 324
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.65 E-value=4.9e+02 Score=24.29 Aligned_cols=88 Identities=22% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhC-CCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~-~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
+..+++++|..+...-.+...+...... +..+.+|..+ .+.+.. ...+...++..|++...+. ++.++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D-~~ri~~-------~~ql~~~~~~~~~~~~~~~--~~~~l~ 143 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGT-------VQQLQDYVKTIGFEVIAVR--DEAAMT 143 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC-CCCHHH-------HHHHHHHhhhcCceEEecC--CHHHHH
Confidence 3468999998888655555444332222 2345444433 322211 1124455666788877654 777777
Q ss_pred HHHHHHHHHhHccCCCEEEEEEE
Q 019498 204 SAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 204 ~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
++++...+ ..+.-+|-+.|
T Consensus 144 ~~l~~l~~----~~~~D~ViIDt 162 (270)
T PRK06731 144 RALTYFKE----EARVDYILIDT 162 (270)
T ss_pred HHHHHHHh----cCCCCEEEEEC
Confidence 76655432 23344555554
No 325
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=28.59 E-value=3.1e+02 Score=26.06 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 124 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
-+...|+++||+.-+. ..+.-+..++.++..+.+++- ..-.. .+++.+.++.+|..+...+
T Consensus 148 l~g~~va~vGD~~~~~-v~~Sl~~~~a~~g~~v~~~~P---------~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 148 LDGLKIALVGDLKYGR-TVHSLAEALTRFGVEVYLISP---------EELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred CCCCEEEEEccCCCCc-HHHHHHHHHHHcCCEEEEECC---------ccccC-CHHHHHHHHHcCCEEEEEC
Confidence 3568999999986431 455556777788877766652 21111 2345566666777665555
No 326
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=28.59 E-value=2.9e+02 Score=27.00 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=42.7
Q ss_pred CccccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc
Q 019498 102 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 165 (340)
Q Consensus 102 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~ 165 (340)
.+.+|.++.-++|+++-...- +..-.++++|=|++. ..+++-|...+..-|+-|+-|..
T Consensus 163 a~llGCgV~TG~Gav~nta~v-~~G~tvaV~GlGgVG----laaI~gA~~agA~~IiAvD~~~~ 221 (366)
T COG1062 163 ACLLGCGVTTGIGAVVNTAKV-EPGDTVAVFGLGGVG----LAAIQGAKAAGAGRIIAVDINPE 221 (366)
T ss_pred eEEEeeeeccChHHhhhcccC-CCCCeEEEEeccHhH----HHHHHHHHHcCCceEEEEeCCHH
Confidence 468899999999988754322 334578888888885 35688888999976666666643
No 327
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=28.17 E-value=1.7e+02 Score=26.09 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred cCCCCeEEEEECCccc--CcchHHHHHHHHHhCCC-CEEEEEEe-CCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 122 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRN-NGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 122 ~~~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~n-N~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
..|+.+.....-+|++ -.|..--++.++..-++ |+-++|+= |. .......+++.++|+.+|++.+.++
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~------dG~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMND------DGTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCC------CCCccCHHHHHHHHHHcCCcEEEHH
Confidence 3567777777777776 47888888999999999 88766642 11 1122345678889999999998766
No 328
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.07 E-value=2.3e+02 Score=22.82 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=26.8
Q ss_pred CCCeEEEEECCcccCcc-hHHHHHHHHHhCCCCEEEEEE
Q 019498 124 KDACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G-~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
..+.+++++.||.-..+ ...+.+......+++++.|-.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~ 140 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGV 140 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEec
Confidence 35678999999987654 366666666777777766644
No 329
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.75 E-value=1.7e+02 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 141 DFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 141 ~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
.-+.++.-|+..++|+|-+|+-|.
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCCC
Confidence 346789999999999999997663
No 330
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=27.50 E-value=89 Score=27.39 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 019498 258 TRFRKWIESNGWWNGDIESELRSSVRKQ 285 (340)
Q Consensus 258 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 285 (340)
+.++..|+++|+++.++++.+.+....+
T Consensus 4 ~Ale~ll~eKGli~~~~id~~i~~~~~~ 31 (185)
T TIGR01323 4 KALEQVLKSKGLIPEGAVDQLTSLYENE 31 (185)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4578899999999999999887766553
No 331
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=27.21 E-value=74 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 019498 256 PVTRFRKWIESNGWWNGDIESELRSSV 282 (340)
Q Consensus 256 pi~~~~~~L~~~g~~~~~~~~~~~~~~ 282 (340)
.+..+-+.|...|++|+++.+.++++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 466678999999999999999998764
No 332
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=27.17 E-value=95 Score=25.01 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 293 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a 293 (340)
|=+..+.+. .++|+++++|.++.+.|++..+-+..+..
T Consensus 43 ~qL~ELe~d-~~~G~l~~~e~~~~~~El~rrLL~d~~~~ 80 (117)
T TIGR03142 43 DRLAELERD-LAEGLLDEAEAEAARAELQRRLLADIPAA 80 (117)
T ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCcccc
Confidence 344455555 36799999999999999999987765443
No 333
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.12 E-value=1.2e+02 Score=23.93 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=27.3
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCc
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 165 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~ 165 (340)
..+|+++.+-....|..+| +..|...+.||+.+..+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3555555554466777887 88888899999999877654
No 334
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.11 E-value=83 Score=24.20 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q 019498 257 VTRFRKWIESNGWWNGDIESELRSS 281 (340)
Q Consensus 257 i~~~~~~L~~~g~~~~~~~~~~~~~ 281 (340)
+..+..+|+.+|++|+++.+.|++.
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 4557899999999999999988775
No 335
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=27.04 E-value=4e+02 Score=24.64 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCCeEEEEECCcccCcc--hHHHHHHHHHhCCCCEEEEEEeCCc--ccccccc-CccCccchhhhhhhcCceEEEEcCCC
Q 019498 124 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNGW--AISTPIS-DQFRSDGAVVKGRAYGVRSIRVDGND 198 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G--~~~Eal~~A~~~~Lpvi~vv~nN~~--~~~~~~~-~~~~~~~~~~~a~a~G~~~~~VdG~d 198 (340)
|.+++++++.||.-+.+ ...+.+..+...+++|..|-.-... ....... .......+.++|+.=|...+.++.++
T Consensus 163 p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~~~ 242 (296)
T TIGR03436 163 PGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNSND 242 (296)
T ss_pred CCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccCcc
Confidence 36789999999986533 3455566666666665444221100 0000000 00112346678887788777664444
Q ss_pred HHHHHHHHHHHHHHhH
Q 019498 199 ALAIYSAVHAAREMAI 214 (340)
Q Consensus 199 ~~~v~~a~~~a~~~~r 214 (340)
+..++.++.+.++
T Consensus 243 ---l~~~f~~i~~~~~ 255 (296)
T TIGR03436 243 ---LDGAFAQIAEELR 255 (296)
T ss_pred ---HHHHHHHHHHHHh
Confidence 5555555555433
No 336
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=26.79 E-value=2.4e+02 Score=29.82 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCeEEEEECCcccCcc-----hHHHHHHHHHh---CCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 125 DACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G-----~~~Eal~~A~~---~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
.+.+|+++.||..+.+ ...+++..|.. .++++++|-..++ .....-..++|+..|..++.+|
T Consensus 564 ~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~---------~~~~~~~~~lA~~~gg~y~~l~ 633 (633)
T TIGR02442 564 GRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG---------FVRLGLAEDLARALGGEYVRLD 633 (633)
T ss_pred CceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC---------CcchhHHHHHHHhhCCeEEecC
Confidence 5678999999998653 23344444444 3445444321110 1111234567777777776543
No 337
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=26.59 E-value=3.4e+02 Score=22.94 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHhHccCCCEEEEEEEec---CCCCCCCCCCCCCCChHHHHHHHhCCChHHHHHHHHHHCCCCCHH
Q 019498 197 NDALAIYSAVHAAREMAIGEGRPILIEALTYR---VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 273 (340)
Q Consensus 197 ~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R---~~gHs~~dd~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~ 273 (340)
.++++..+.+..|.+. | ||+-.--. ..-.+.-+-|..|+|.+++- + ++||+.++-+++.+..-++..
T Consensus 34 mspdqAk~li~~A~~e-----G--Ll~~~~~~l~~~Fd~~~v~iP~~FkP~~~~l--~-e~~~fe~ild~ia~~~g~~~~ 103 (144)
T PF09999_consen 34 MSPDQAKRLIDEAIEE-----G--LLEEEGGYLVPNFDPSEVEIPLGFKPDEEIL--Q-ERDPFERILDYIAAKTGIEKQ 103 (144)
T ss_pred CCHHHHHHHHHHHHHC-----C--CeeecCCEEEEecCccccccCCCCCCcHHHH--h-cccHHHHHHHHHHHhcCCCHH
Confidence 4677778888777651 2 22211100 11122234467799887764 3 689999999999996667887
Q ss_pred HHHHHHHHHHHHHH
Q 019498 274 IESELRSSVRKQIL 287 (340)
Q Consensus 274 ~~~~~~~~~~~~~~ 287 (340)
++-+..++.+.++.
T Consensus 104 evv~~in~~q~~~~ 117 (144)
T PF09999_consen 104 EVVAEINELQEELG 117 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777666777665
No 338
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.49 E-value=1.3e+02 Score=28.60 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=24.4
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE---EEeCCcc
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWA 166 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v---v~nN~~~ 166 (340)
...+++-|||++.. +..++..+++|+|-| |+||-.+
T Consensus 93 d~Li~IGGdgs~~~-----a~~L~e~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 93 EGLVVIGGDGSYTG-----AQKLYEEGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred CEEEEeCCchHHHH-----HHHHHHhhCCCEEeecccccCCCcC
Confidence 46788889998852 233444478999888 5666543
No 339
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=26.44 E-value=4.5e+02 Score=25.56 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhc
Q 019498 108 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 187 (340)
Q Consensus 108 ~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~ 187 (340)
+.+-|+|.-.....++.+-.|++.-+--- .||.-. ........++|+.+|++|--..+. +.... | .. -.
T Consensus 163 ~~gTal~~i~~A~~~gk~~~V~v~EsRP~-~qG~~l-ta~eL~~~GI~vtlI~Dsa~~~~M-~~~~v----d--~V--iv 231 (344)
T PRK05720 163 GYGTALAPIYAAKEKGIDIHVYADETRPR-LQGARL-TAWELYQAGIDVTVITDNMAAHLM-QTGKI----D--AV--IV 231 (344)
T ss_pred chhHHHHHHHHHHHcCCceEEEEcCCCCh-hhhHHH-HHHHHHHCCCCEEEEcccHHHHHh-cccCC----C--EE--EE
Confidence 34557776655554455445554432222 455311 112235678999988876432221 11010 1 11 14
Q ss_pred CceEEEEcC---CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 188 GVRSIRVDG---NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 188 G~~~~~VdG---~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
|...+..|| |.+....-|+ .| +..+.|+++-+-+|++...
T Consensus 232 GAd~I~~nG~v~NkiGT~~lAl-~A----k~~~vPfyV~a~~~kfd~~ 274 (344)
T PRK05720 232 GADRIAANGDVANKIGTYQLAI-AA----KYHGVPFYVAAPSSTIDLT 274 (344)
T ss_pred cccEEecCCCEeehhhHHHHHH-HH----HHhCCCEEEeccccccCcC
Confidence 777777777 3333322222 12 2367999999999888644
No 340
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=26.40 E-value=6.3e+02 Score=24.85 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCCCeEEEEECCc-ccCcchHHHHHHHHHhCCCCEEEEEEeCCc--------------ccc---ccc--cCccCccchhh
Q 019498 123 RKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNGW--------------AIS---TPI--SDQFRSDGAVV 182 (340)
Q Consensus 123 ~~~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~--------------~~~---~~~--~~~~~~~~~~~ 182 (340)
+|++ -|+|+|=| ++..-.+..++..|...++.-++|..++.. .+. .|. +.......+..
T Consensus 134 nPdk-~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~ 212 (369)
T TIGR00075 134 NPDR-KVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIGAKPYAP 212 (369)
T ss_pred CCCC-eEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEeccchhHH
Confidence 4554 34444443 233345666677788888866666666543 111 010 11122345777
Q ss_pred hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEE
Q 019498 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 223 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe 223 (340)
+++-|++|.+ |.|-.+.++..++...++.+.++ .|.+..
T Consensus 213 l~~~y~~P~V-VaGFEp~DiL~~i~~ll~qi~~g-~~~v~N 251 (369)
T TIGR00075 213 IAEKYKIPIV-IAGFEPVDILQAIYMLLKQAISG-EAKVEN 251 (369)
T ss_pred HHHHcCCCeE-EeccCHHHHHHHHHHHHHHHHCC-CceEEE
Confidence 8899999987 68999999999998888766654 566654
No 341
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.11 E-value=1.3e+02 Score=26.70 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 019498 254 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 291 (340)
Q Consensus 254 ~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~ 291 (340)
+|=+.+++++|.+.| .+++|.+++-.|+..++-++.+
T Consensus 7 ~~y~~~l~~~L~~~~-~~e~~~e~~L~eil~~LleaQk 43 (206)
T PF06570_consen 7 QEYIFDLRKYLRSSG-VSEEEIEELLEEILPHLLEAQK 43 (206)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 345667899997777 5999999999999999988865
No 342
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.71 E-value=2.5e+02 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=10.7
Q ss_pred hhhhhhhcCceEEEEcCC
Q 019498 180 AVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG~ 197 (340)
..+.++..|++.+.+.++
T Consensus 79 ~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 79 AAEIAKERGAKVIAITDS 96 (139)
T ss_pred HHHHHHHcCCeEEEEcCC
Confidence 455566666666666543
No 343
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=25.67 E-value=85 Score=24.40 Aligned_cols=30 Identities=7% Similarity=-0.034 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSVRK 284 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~ 284 (340)
.++..+-+.|.+.|++|+++.+.|+.+...
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t~ 52 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQT 52 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCCh
Confidence 445567789999999999999999876444
No 344
>PRK15482 transcriptional regulator MurR; Provisional
Probab=25.60 E-value=2.2e+02 Score=26.42 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=37.1
Q ss_pred ccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhh
Q 019498 105 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVK 183 (340)
Q Consensus 105 lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~ 183 (340)
+|.|.+..++.-+..++..-+..+.+. .|+..+ ...+...+- .+++++...++.-. .....+.
T Consensus 141 ~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~-------~~~~~~~~~~Dv~i~iS~sg~t~~--------~~~~~~~ 204 (285)
T PRK15482 141 TGLGGSALVGRDLSFKLMKIGYRVACE-ADTHVQ-------ATVSQALKKGDVQIAISYSGSKKE--------IVLCAEA 204 (285)
T ss_pred EEeChhHHHHHHHHHHHHhCCCeeEEe-ccHhHH-------HHHHhcCCCCCEEEEEeCCCCCHH--------HHHHHHH
Confidence 455555556666666655444444443 343221 111222222 45666554443221 1245667
Q ss_pred hhhcCceEEEEcCC
Q 019498 184 GRAYGVRSIRVDGN 197 (340)
Q Consensus 184 a~a~G~~~~~VdG~ 197 (340)
|+.-|++++-+.++
T Consensus 205 a~~~g~~iI~IT~~ 218 (285)
T PRK15482 205 ARKQGATVIAITSL 218 (285)
T ss_pred HHHCCCEEEEEeCC
Confidence 77778887777543
No 345
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=25.48 E-value=2.3e+02 Score=28.10 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=9.9
Q ss_pred HHHHHhCCCCEEEEE
Q 019498 146 LNFSAVTEAPVIFIC 160 (340)
Q Consensus 146 l~~A~~~~Lpvi~vv 160 (340)
-.+|.+++.++..|-
T Consensus 96 ~~ia~~~g~~v~~~~ 110 (383)
T COG0075 96 AEIAERYGAEVVVLE 110 (383)
T ss_pred HHHHHHhCCceEEEe
Confidence 346777888776553
No 346
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=25.31 E-value=2.5e+02 Score=25.45 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=48.8
Q ss_pred cCCCCeEEEEECCccc--CcchHHHHHHHHHhCCC-CEEEEEEe-CCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 122 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRN-NGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 122 ~~~~~~vv~~~GDG~~--~~G~~~Eal~~A~~~~L-pvi~vv~n-N~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
..|+.+.....-+|++ -.|..--++.++..-++ |+-++|+= |. .......+++.++|+.+|++.+.++
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~------dG~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITND------DGTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecC------CCCccCHHHHHHHHHHcCCcEEEHH
Confidence 3566777777778887 47888888999999999 87666642 11 1122334678889999999998765
No 347
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=25.04 E-value=6.4e+02 Score=26.70 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=86.5
Q ss_pred ccCCchHHHHHHHHHccCCCcEEEccCccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCccccccCCCCCCccccCcc-cc
Q 019498 28 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSST-IA 106 (340)
Q Consensus 28 ~~~~G~Ea~~~~~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~g~-lG 106 (340)
-+.+|+||+.-++ |...=-+++.||| -+.-+++..+.... +.+. +++..+|. =-
T Consensus 14 ~~llGneAi~r~A---le~gV~~~aGYpG--------tPstei~e~la~~~------~~l~--------~vy~e~s~NEk 68 (640)
T COG4231 14 RLLLGNEAIARGA---LEAGVGVAAGYPG--------TPSTELIETLAKAK------KILG--------DVYFEWSLNEK 68 (640)
T ss_pred HHhccHHHHHHHH---HhcCceEEeccCC--------CCcHHHHHHHHHhh------hhcC--------cEEEEecccHH
Confidence 4578999987544 4434447778886 34556666665431 1110 12222221 11
Q ss_pred chhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC--CEEEEEEeCCccccccccCccCccchhhhh
Q 019498 107 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKG 184 (340)
Q Consensus 107 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a 184 (340)
-.+-.|.|++++ ..+.++.+=-=+++ ...-.|..++..+. .+|+|+-+ ..+...++.++. ---.+
T Consensus 69 vA~e~a~GA~~~------G~ral~~mKhVGlN--vAsDpl~s~ay~Gv~GGlviv~aD-Dpg~~SSqneqd----sr~y~ 135 (640)
T COG4231 69 VALETAAGASYA------GVRALVTMKHVGLN--VASDPLMSLAYAGVTGGLVIVVAD-DPGMHSSQNEQD----SRAYG 135 (640)
T ss_pred HHHHHHHHhhhc------CceeeEEecccccc--cchhhhhhhhhcCccccEEEEEcc-CCCcccccchhH----hHHHH
Confidence 223455555554 12222222111121 22223444444555 34444433 333322222221 11234
Q ss_pred hhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCCCCC
Q 019498 185 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 235 (340)
Q Consensus 185 ~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gHs~~ 235 (340)
+...+|++.-- |+.+.++..+.|++--+..+-|+++-+.| | ..|+.+
T Consensus 136 ~~a~iPvLeP~--d~Qea~d~~~~afelSe~~~~pVilr~tt-r-~~h~~~ 182 (640)
T COG4231 136 KFALIPVLEPS--DPQEAYDYVKYAFELSEKSGLPVILRTTT-R-VSHSRG 182 (640)
T ss_pred HhcCceeecCC--ChHHHHHHHHHHHHHHHHhCCCEEEEEEe-e-eeccce
Confidence 44567777544 99999999999999988999999998877 3 346554
No 348
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.90 E-value=1.3e+02 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=22.0
Q ss_pred cccccccCCCccHHHHHHHHHHHHHhCCCCCCCC
Q 019498 304 LFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 337 (340)
Q Consensus 304 ~~~~v~~~~~~~~~~~~~~l~~~~~~~p~~~~~~ 337 (340)
-+..+..+..--..++.+++++....+|..++.-
T Consensus 69 ~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~l 102 (113)
T PF02520_consen 69 KLSAILDNKSLTRQQQQEAIDALRKQYPEEVDTL 102 (113)
T ss_pred HHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHHH
Confidence 3444444443345577888999999999875543
No 349
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=24.63 E-value=5.5e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=28.4
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHh--------CCCCEEEEEEeCCcccc
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAIS 168 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~--------~~Lpvi~vv~nN~~~~~ 168 (340)
+...++++||-.-.+=-+.|++.+|.. .+=|||+||+.-+.+.+
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g 79 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG 79 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc
Confidence 456777777766443336777777643 34599999986554443
No 350
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=24.58 E-value=5.1e+02 Score=24.36 Aligned_cols=51 Identities=6% Similarity=-0.098 Sum_probs=33.2
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCC-C--CEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEc
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTE-A--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 195 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~-L--pvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 195 (340)
+++|...| .|...++|--+...+ + .++.|+.|+. +...+|+.+|+|++.++
T Consensus 91 ri~vl~Sg-----~g~nl~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 91 KVLIMVSK-----FDHCLNDLLYRWRIGELPMDIVGVVSNHP--------------DLEPLAAWHGIPFHHFP 144 (286)
T ss_pred eEEEEEcC-----CcccHHHHHHHHHcCCCCcEEEEEEECCc--------------cHHHHHHHhCCCEEEeC
Confidence 44444444 356677777666544 4 4667766652 46666899999998875
No 351
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=24.47 E-value=4e+02 Score=21.84 Aligned_cols=69 Identities=9% Similarity=-0.031 Sum_probs=37.9
Q ss_pred CCeEEEEECCcccCcch-HHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCCHHHHH
Q 019498 125 DACAVTYFGDGGTSEGD-FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 203 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~-~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d~~~v~ 203 (340)
....++++.||...... +.+.+..+...+.++..|..-.. .....+...+..=|...+.+. |..++.
T Consensus 99 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~----------~~~~~l~~ia~~~gG~~~~~~--~~~~~~ 166 (171)
T cd01461 99 SVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSD----------VNTYLLERLAREGRGIARRIY--ETDDIE 166 (171)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCc----------cCHHHHHHHHHcCCCeEEEec--ChHHHH
Confidence 45899999999865322 23344433334566655543211 011234556666677777777 666655
Q ss_pred HH
Q 019498 204 SA 205 (340)
Q Consensus 204 ~a 205 (340)
+-
T Consensus 167 ~~ 168 (171)
T cd01461 167 SQ 168 (171)
T ss_pred HH
Confidence 43
No 352
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.28 E-value=2.6e+02 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=8.3
Q ss_pred hhhhhhhcCceEEEEcC
Q 019498 180 AVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG 196 (340)
+...++.+|.+.+-+.+
T Consensus 105 ~~~~aK~~g~~liaiT~ 121 (202)
T COG0794 105 LAPKAKRLGAKLIAITS 121 (202)
T ss_pred HHHHHHHcCCcEEEEeC
Confidence 44444555555555444
No 353
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=24.16 E-value=1.4e+02 Score=18.84 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 288 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 288 (340)
||+..|-+.+-..-++|.+|..++-.+++.-.+.
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~ 35 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEA 35 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHh
Confidence 6788888888888999999888887777765443
No 354
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=24.06 E-value=1e+02 Score=25.28 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=30.8
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
||++.-..+ |++.+.+++.+|.+. -+-++++...+++.++
T Consensus 15 ygc~~~~L~--d~~~l~~~l~~aa~~----~g~tiv~~~~h~F~p~ 54 (123)
T PRK01706 15 WGVDFSLLD--DMYFLEHHLVEAADL----SGAHVLNVSTKEFDPQ 54 (123)
T ss_pred eCCChHHcC--CHHHHHHHHHHHHHH----cCCeEEEEEEEEcCCC
Confidence 455544455 899999999998874 4688999999999765
No 355
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=24.05 E-value=6.7e+02 Score=24.32 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEE-EEcCCCHHHHHHHHHHHHHHhHccCCCEE
Q 019498 143 HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPIL 221 (340)
Q Consensus 143 ~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~d~~~v~~a~~~a~~~~r~~~~P~l 221 (340)
.+++..+..-+..+||||+=|+ |+....+..++..+++.....++ .||- -..+... ......+. ..+-+
T Consensus 135 ~~~~~~~~~~~~~lv~i~nPNN-----PTG~~~~~~~l~~l~~~~~~~~~vVvDE-AY~eF~~--~~~~~l~~--~~~nl 204 (356)
T COG0079 135 LDAILAAIRDKTKLVFLCNPNN-----PTGTLLPREELRALLEALPEGGLVVIDE-AYIEFSP--ESSLELLK--YPPNL 204 (356)
T ss_pred HHHHHHhhhcCCCEEEEeCCCC-----CCCCCCCHHHHHHHHHhCCCCcEEEEeC-chhhcCC--chhhhhcc--CCCCE
Confidence 3555555555788999996554 55555555667777666533322 3451 0111111 12222222 34557
Q ss_pred EEEEEecC-CCCCCCCCCCCC--CChHHHHHHHhCCCh--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 019498 222 IEALTYRV-GHHTTSDDSTKY--RPVDEIEWWRTTQDP--VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 295 (340)
Q Consensus 222 Ie~~t~R~-~gHs~~dd~~~Y--r~~~e~~~~~~~~dp--i~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~a~~ 295 (340)
|.++|+=. +|-... --.| -+++-++.+.+.+.| +..+...+...-+-.++.+++..+.+.++-+.-.+...+
T Consensus 205 ivlRTfSKa~gLAGl--RlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~ 281 (356)
T COG0079 205 IVLRTFSKAFGLAGL--RVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKA 281 (356)
T ss_pred EEEEecHHhhhcchh--ceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887533 332221 1123 467778888767777 667777776666666677777777777766665555554
No 356
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=24.05 E-value=2.2e+02 Score=27.10 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=39.6
Q ss_pred HHHHhhh-cCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEE
Q 019498 115 AAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 193 (340)
Q Consensus 115 ~A~a~k~-~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~ 193 (340)
.|++.++ ..++..+++++|-|.-.. +....++..+.+.-|.|..-|.- ....|++..+.+|+++..
T Consensus 116 sala~~~La~~~~~~l~viGaG~QA~---~~~~a~~~~~~i~~v~v~~r~~~----------~~~~~~~~~~~~~~~v~~ 182 (313)
T PF02423_consen 116 SALAARYLARPDARTLGVIGAGVQAR---WHLRALAAVRPIKEVRVYSRSPE----------RAEAFAARLRDLGVPVVA 182 (313)
T ss_dssp HHHHHHHHS-TT--EEEEE--SHHHH---HHHHHHHHHS--SEEEEE-SSHH----------HHHHHHHHHHCCCTCEEE
T ss_pred HHHHHHHhCcCCCceEEEECCCHHHH---HHHHHHHHhCCceEEEEEccChh----------HHHHHHHhhcccccccee
Confidence 3445554 556778999999998753 33345566677766777654321 123466666668999998
Q ss_pred EcCCCHH
Q 019498 194 VDGNDAL 200 (340)
Q Consensus 194 VdG~d~~ 200 (340)
++ |++
T Consensus 183 ~~--~~~ 187 (313)
T PF02423_consen 183 VD--SAE 187 (313)
T ss_dssp ES--SHH
T ss_pred cc--chh
Confidence 88 653
No 357
>PLN03013 cysteine synthase
Probab=23.86 E-value=3.1e+02 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC
Q 019498 148 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 148 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 197 (340)
.|...++|+++|+.++- .....+..++||..++.++++
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 45568899988886542 122445677889998888754
No 358
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.74 E-value=2.4e+02 Score=25.94 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred ccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhhh
Q 019498 105 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVK 183 (340)
Q Consensus 105 lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~~ 183 (340)
+|.|....++--++.++..-+..+++ ..|.... ...+...+- .+++++..+++.-. .....+.
T Consensus 134 ~G~G~s~~~A~~~~~~l~~~g~~~~~-~~d~~~~-------~~~~~~~~~~Dv~I~iS~sg~~~~--------~~~~~~~ 197 (278)
T PRK11557 134 TGIGASGLVAQNFAWKLMKIGINAVA-ERDMHAL-------LATVQALSPDDLLLAISYSGERRE--------LNLAADE 197 (278)
T ss_pred EecChhHHHHHHHHHHHhhCCCeEEE-cCChHHH-------HHHHHhCCCCCEEEEEcCCCCCHH--------HHHHHHH
Confidence 44555555666666666555555544 3443221 222222333 35556544443211 1246677
Q ss_pred hhhcCceEEEEcCC
Q 019498 184 GRAYGVRSIRVDGN 197 (340)
Q Consensus 184 a~a~G~~~~~VdG~ 197 (340)
|+..|++++.+.++
T Consensus 198 ak~~ga~iI~IT~~ 211 (278)
T PRK11557 198 ALRVGAKVLAITGF 211 (278)
T ss_pred HHHcCCCEEEEcCC
Confidence 77788888887654
No 359
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=23.38 E-value=5.2e+02 Score=24.98 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=51.7
Q ss_pred hHHHHHHHHhhhcCCCCeEEEEECCccc-CcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcC
Q 019498 110 PHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 188 (340)
Q Consensus 110 p~A~G~A~a~k~~~~~~~vv~~~GDG~~-~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G 188 (340)
+.++|.=......+..-.|++. ++-- .||.-. ........++|+.+|++|--..+. +..+ .|.. -.|
T Consensus 165 gtal~~l~~A~~~g~~~~V~v~--EsrP~~qG~rl-ta~~L~~~GI~vtlI~Dsav~~~m-~~~~----vd~V----ivG 232 (331)
T TIGR00512 165 GTALGVIRSAHEKGRLEHVYAD--ETRPRLQGARL-TAWELVQEGIPATLITDSMAAHLM-KHGE----VDAV----IVG 232 (331)
T ss_pred chHHHHHHHHHHcCCceEEEEC--CCCchhhHHHH-HHHHHHHCCCCEEEEcccHHHHHh-cccC----CCEE----EEc
Confidence 3455554433333333344444 3332 455311 112234678999988876432221 1101 1111 147
Q ss_pred ceEEEEcC---CCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 189 VRSIRVDG---NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 189 ~~~~~VdG---~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
...+.-|| |.+....-|+ .|. ..+.|+++-+-+|++...
T Consensus 233 Ad~v~~nG~v~nkiGT~~lA~-~Ak----~~~vPfyV~a~~~kfd~~ 274 (331)
T TIGR00512 233 ADRIAANGDTANKIGTYQLAV-LAK----HHGVPFYVAAPTSTIDLE 274 (331)
T ss_pred ccEEecCCCEeehhhHHHHHH-HHH----HhCCCEEEeccccccccC
Confidence 77777777 2332222222 122 367999999998887543
No 360
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.36 E-value=1.4e+02 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEE
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 159 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~v 159 (340)
|..+|.+.|||+.. +.-.+.-..-+..+.|||=|
T Consensus 2 Dt~~v~~SGDgGw~-~~d~~~a~~l~~~G~~VvGv 35 (192)
T PF06057_consen 2 DTLAVFFSGDGGWR-DLDKQIAEALAKQGVPVVGV 35 (192)
T ss_pred CEEEEEEeCCCCch-hhhHHHHHHHHHCCCeEEEe
Confidence 56799999999997 44444344445567777654
No 361
>PRK07668 hypothetical protein; Validated
Probab=23.32 E-value=2.4e+02 Score=26.24 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 019498 254 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 292 (340)
Q Consensus 254 ~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~a~~~ 292 (340)
+|=+..++.+|...| ++++|.+++-.|+..++.++.+.
T Consensus 7 eefl~~L~~yL~~~g-lseeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 7 RKFLDDTRVYLIAKG-IKEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 355677999999888 58999999999999988888654
No 362
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=23.11 E-value=87 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
Q 019498 258 TRFRKWIESNGWWNGDIESELRSSVR 283 (340)
Q Consensus 258 ~~~~~~L~~~g~~~~~~~~~~~~~~~ 283 (340)
.++-.+|..+|++|+++.++|..+..
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 55889999999999999999988643
No 363
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=22.85 E-value=1.4e+02 Score=25.85 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEe
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 162 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~n 162 (340)
.++.+.++|-|....+...+...++...++||+.-...
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 35678888999987677788888999999998765543
No 364
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=22.84 E-value=1.8e+02 Score=22.51 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=34.0
Q ss_pred hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHc--cCCCEEEEEEE
Q 019498 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIG--EGRPILIEALT 226 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~--~~~P~lIe~~t 226 (340)
+...+++.++.+.-.|+.++.+++.+-++.+-. .+.|++|++.-
T Consensus 9 Kg~~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~ 54 (99)
T PF05209_consen 9 KGSNFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSN 54 (99)
T ss_dssp EEETTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEE
T ss_pred EcCceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhh
Confidence 345688999999989999999999887766554 36799999864
No 365
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=22.67 E-value=5.5e+02 Score=22.86 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC
Q 019498 148 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 148 ~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 197 (340)
.|...++|+++++.++. ...-.+..+.+|..++.+++.
T Consensus 68 ~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 68 AAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 45567899988886653 122345677899999999875
No 366
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=22.43 E-value=3.3e+02 Score=21.36 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=26.3
Q ss_pred CCCeEEEEECCcccCcc--hHHHHHHHHHhCCCCEEEEE
Q 019498 124 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFIC 160 (340)
Q Consensus 124 ~~~~vv~~~GDG~~~~G--~~~Eal~~A~~~~Lpvi~vv 160 (340)
.....+++++||....+ ...+.+..+...++.+.+|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~ 138 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIG 138 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEE
Confidence 35678899999998655 36677777777777665553
No 367
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=22.27 E-value=1.4e+02 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 019498 254 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQI 286 (340)
Q Consensus 254 ~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~~ 286 (340)
.-|+.+=.++|..+| +|++||++.-.+.....
T Consensus 20 ~sp~~~k~~FL~sKG-Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 20 NSPLEKKIAFLESKG-LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp CS-HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred cCCHHHHHHHHHcCC-CCHHHHHHHHHhcCCcc
Confidence 457777889999998 69999988777766544
No 368
>PLN02618 tryptophan synthase, beta chain
Probab=22.10 E-value=4.6e+02 Score=26.16 Aligned_cols=71 Identities=21% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCce
Q 019498 111 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 190 (340)
Q Consensus 111 ~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 190 (340)
.+++.++..+..++ ..+|+-+|-|-.. . .....|+..++++++++-.+. + .++ ..-..+.+.||..
T Consensus 106 ~a~~~~l~A~~~g~-~~vIaesgaGNhG--~--AlA~aaa~~Gl~~~I~m~~~~--~----~~~---~~nv~~mr~lGA~ 171 (410)
T PLN02618 106 NAVAQALLAKRLGK-KRIIAETGAGQHG--V--ATATVCARFGLECIVYMGAQD--M----ERQ---ALNVFRMRLLGAE 171 (410)
T ss_pred HHHHHHHHHHHcCC-CEEEEEcCcHHHH--H--HHHHHHHHcCCcEEEEEcCCc--h----hhh---hhhHHHHHHCCCE
Confidence 35566655554443 4466665544432 1 113345678999887775432 1 111 1122356778999
Q ss_pred EEEEc
Q 019498 191 SIRVD 195 (340)
Q Consensus 191 ~~~Vd 195 (340)
++.|+
T Consensus 172 Vi~v~ 176 (410)
T PLN02618 172 VRPVH 176 (410)
T ss_pred EEEEe
Confidence 98883
No 369
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.07 E-value=2e+02 Score=24.65 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=49.9
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC--------ccCccchhhhhhhcCceEEEEcCC
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD--------QFRSDGAVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~--------~~~~~~~~~~a~a~G~~~~~VdG~ 197 (340)
..-++++|-.....+ .-.+....++++.+...+|...+..-... ........+.|+.+|++++.+..
T Consensus 77 ~~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~s- 151 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIES- 151 (176)
T ss_dssp TSEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--
T ss_pred CCcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEe-
Confidence 345666666666543 23344556888877777764322211110 11122356788999999999873
Q ss_pred CHHHHHHHHHHHHHHhH
Q 019498 198 DALAIYSAVHAAREMAI 214 (340)
Q Consensus 198 d~~~v~~a~~~a~~~~r 214 (340)
..+.++.|+.+|+.-++
T Consensus 152 g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 152 GEESIRRALEEALRIAR 168 (176)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 47899999999976543
No 370
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.95 E-value=3.2e+02 Score=23.25 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=9.2
Q ss_pred hhhhhhhcCceEEEEcC
Q 019498 180 AVVKGRAYGVRSIRVDG 196 (340)
Q Consensus 180 ~~~~a~a~G~~~~~VdG 196 (340)
..+.|+..|++++-+.+
T Consensus 94 ~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 94 AAEKAKKAGAKVVLITS 110 (179)
T ss_pred HHHHHHHCCCeEEEEEC
Confidence 44555555655555543
No 371
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=21.80 E-value=8e+02 Score=24.43 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=27.3
Q ss_pred HHHH-HHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC
Q 019498 145 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 197 (340)
Q Consensus 145 al~~-A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 197 (340)
++.+ |+.+++++++++-...+... +.-....+.||..++.+++.
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~Vi~~~~~ 176 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAEVIPSPSE 176 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCEEEEECCc
Confidence 3444 56689998777654322111 11235678899999999874
No 372
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.76 E-value=1.6e+02 Score=27.87 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=33.8
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 163 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN 163 (340)
.++..+|++...|.+. .+.+++..|...+.++|.|..|.
T Consensus 130 ~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~tI~IT~~~ 168 (299)
T PRK05441 130 TAKDVVVGIAASGRTP--YVIGALEYARERGALTIGISCNP 168 (299)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCC
Confidence 4677999999999987 68999999999999999888653
No 373
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.50 E-value=7.8e+02 Score=24.18 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=59.2
Q ss_pred CCCCeEEEEECCc-ccCcchHHHHHHHHHhCCCCEEEEEEeCCc--------------ccc---ccc--cCccCccchhh
Q 019498 123 RKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNGW--------------AIS---TPI--SDQFRSDGAVV 182 (340)
Q Consensus 123 ~~~~~vv~~~GDG-~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~--------------~~~---~~~--~~~~~~~~~~~ 182 (340)
+|++ -|+|+|=| ++..-.+..++..|...++.-++|..+..+ .++ .|. +.......+..
T Consensus 128 nP~k-~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI~G~~~y~~ 206 (364)
T PRK15062 128 NPDK-EVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTIIGTEPYEF 206 (364)
T ss_pred CCCC-eEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEEeccchhHH
Confidence 4554 34444433 223334555666688888855555555543 111 010 11122345677
Q ss_pred hhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEE
Q 019498 183 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 224 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~ 224 (340)
+++-||+|.+ |.|-.+.++..++...++.+.++ .|.+...
T Consensus 207 l~~~y~~P~V-VaGFEp~DiL~ai~~lv~q~~~g-~~~v~N~ 246 (364)
T PRK15062 207 LAEEYGIPVV-VAGFEPLDILQSILMLVRQLEEG-RAEVENQ 246 (364)
T ss_pred HHHHcCCCeE-EeccCHHHHHHHHHHHHHHHHCC-CceEEEc
Confidence 8889999987 68899999999988888766554 5666543
No 374
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.37 E-value=2.3e+02 Score=26.23 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=39.8
Q ss_pred cccchhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCC-CEEEEEEeCCccccccccCccCccchhh
Q 019498 104 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV 182 (340)
Q Consensus 104 ~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~L-pvi~vv~nN~~~~~~~~~~~~~~~~~~~ 182 (340)
..|.|-...++.-++.++...+..+.++ .|.... +..+...+- .+++++...++.-. ..+..+
T Consensus 145 i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~-------~~~~~~~~~~Dl~I~iS~sG~t~~--------~~~~~~ 208 (292)
T PRK11337 145 LYGAGGSAAIARDVQHKFLRIGVRCQAY-DDAHIM-------LMSAALLQEGDVVLVVSHSGRTSD--------VIEAVE 208 (292)
T ss_pred EEEecHHHHHHHHHHHHHhhCCCeEEEc-CCHHHH-------HHHHhcCCCCCEEEEEeCCCCCHH--------HHHHHH
Confidence 3455555566666666666555555443 332221 111122222 45666554442211 234667
Q ss_pred hhhhcCceEEEEcCCC
Q 019498 183 KGRAYGVRSIRVDGND 198 (340)
Q Consensus 183 ~a~a~G~~~~~VdG~d 198 (340)
.|+..|++++.+.++.
T Consensus 209 ~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 209 LAKKNGAKIICITNSY 224 (292)
T ss_pred HHHHCCCeEEEEeCCC
Confidence 7777888888776543
No 375
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.35 E-value=1.3e+02 Score=21.87 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 019498 255 DPVTRFRKWIESNGWWNGDIESELRSSV 282 (340)
Q Consensus 255 dpi~~~~~~L~~~g~~~~~~~~~~~~~~ 282 (340)
.++..+-.+|.++|++|.++.+.+....
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~~ 40 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSES 40 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcCC
Confidence 3566778899999999999999887753
No 376
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=21.27 E-value=3.6e+02 Score=22.45 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=33.1
Q ss_pred HHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEE
Q 019498 114 GAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 158 (340)
Q Consensus 114 G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~ 158 (340)
-.++....++.....|.+-+|+....|.+.+.|+.+...+..=|-
T Consensus 85 ~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v~ 129 (137)
T COG0848 85 EAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKVG 129 (137)
T ss_pred HHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 344444443344448999999999999999999999999984333
No 377
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=20.77 E-value=3.2e+02 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 160 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv 160 (340)
..+.++++||| + .+.+.-|..++..++.+.+.+
T Consensus 152 ~g~k~a~vGDg--N-Nv~nSl~~~~a~~G~dv~ia~ 184 (310)
T COG0078 152 KGLKLAYVGDG--N-NVANSLLLAAAKLGMDVRIAT 184 (310)
T ss_pred cCcEEEEEcCc--c-hHHHHHHHHHHHhCCeEEEEC
Confidence 56899999999 2 244555666778898887664
No 378
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=20.63 E-value=2.4e+02 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=27.4
Q ss_pred cCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE
Q 019498 122 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 160 (340)
Q Consensus 122 ~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv 160 (340)
...|..++++-++-+.+ ....|.+..+..+++|+++++
T Consensus 92 ~~~D~ailvVda~~g~~-~~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 92 RQADIAILVVDANDGIQ-PQTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp TTSSEEEEEEETTTBST-HHHHHHHHHHHHTT-SEEEEE
T ss_pred cccccceeeeecccccc-cccccccccccccccceEEee
Confidence 34677788887765554 468889999999999955555
No 379
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=20.62 E-value=4.6e+02 Score=24.89 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred EEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCCC
Q 019498 129 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 198 (340)
Q Consensus 129 v~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~d 198 (340)
|+|+|..++.. .+.++| ...+..++.|+.+..-... + .......++.++|...|++++..+-.+
T Consensus 3 Ivf~Gs~~~a~-~~L~~L---~~~~~~i~~Vvt~pd~~~~-r-~~~~~~~~v~~~A~~~~Ipv~~~~~~~ 66 (313)
T TIGR00460 3 IVFFGTPTFSL-PVLEEL---REDNFEVVGVVTQPDKPAG-R-GKKLTPPPVKVLAEEKGIPVFQPEKQR 66 (313)
T ss_pred EEEECCCHHHH-HHHHHH---HhCCCcEEEEEcCCCCccC-C-CCCCCCChHHHHHHHcCCCEEecCCCC
Confidence 67888888864 234444 3344667777754321000 0 111223468889999999999876433
No 380
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=20.52 E-value=1.3e+02 Score=24.77 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=31.3
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
-||++....+ |++.+..++.+|.+. -+-++++...+++.++
T Consensus 12 lygC~~~~L~--d~~~l~~~l~~a~~~----~g~til~~~~h~F~p~ 52 (127)
T PRK03124 12 LYGCDFDKLN--DMELIEDIMVDAALE----AGAEVREVAFHKFSPQ 52 (127)
T ss_pred EeCCChHHcC--CHHHHHHHHHHHHHH----cCCeEEEEEeEEcCCC
Confidence 3555544455 999999999999874 3678999999999765
No 381
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.51 E-value=6.6e+02 Score=22.90 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=64.2
Q ss_pred CccccCccccc-hhhHHHHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccC--
Q 019498 97 NYFTVSSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-- 173 (340)
Q Consensus 97 ~~~~~~g~lG~-~lp~A~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~-- 173 (340)
+++..+..++. .+--.+|-.++.++.+.+-.+|+-...|++- . +...|...+.|++++=..+..+.....+.
T Consensus 82 gy~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~----l-A~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~ 156 (238)
T PRK08558 82 GYVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIP----L-AVAIASYFGADLVYAKKSKETGVEKFYEEYQ 156 (238)
T ss_pred CEEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHH----H-HHHHHHHHCcCEEEEEecCCCCCcceEEEee
Confidence 44444554443 3556778888888765443455555555553 2 35568888999887654443322111110
Q ss_pred -ccCc--c--chhhhhhhcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEE
Q 019498 174 -QFRS--D--GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 225 (340)
Q Consensus 174 -~~~~--~--~~~~~a~a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~ 225 (340)
..+. . .+.+.+-.=|-.++.|| |+..-=.++..+.+.+++. |..++.+.
T Consensus 157 s~s~~~~~~~~l~~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~-ga~vvgv~ 210 (238)
T PRK08558 157 RLASGIEVTLYLPASALKKGDRVLIVD--DIIRSGETQRALLDLARQA-GADVVGVF 210 (238)
T ss_pred ccCCCceeEEEecHHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc-CCEEEEEE
Confidence 0000 0 01112222488899999 7766556666666666555 34444333
No 382
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=20.40 E-value=2.7e+02 Score=23.76 Aligned_cols=74 Identities=12% Similarity=-0.009 Sum_probs=39.7
Q ss_pred CCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCCccccccccCccCccchhhhhhhcCceEEEEcCC---CHHH
Q 019498 125 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DALA 201 (340)
Q Consensus 125 ~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~---d~~~ 201 (340)
+-.+++++-|+.--+-. .+-+......++|+|++++- +-.... .. -..|...+.+.+|+|++.+.+. ..++
T Consensus 78 ~~D~ii~VvDa~~l~r~-l~l~~ql~e~g~P~vvvlN~--~D~a~~--~g-~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 78 KPDLIIVVVDATNLERN-LYLTLQLLELGIPVVVVLNK--MDEAER--KG-IEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSSEEEEEEEGGGHHHH-HHHHHHHHHTTSSEEEEEET--HHHHHH--TT-EEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCCEEEEECCCCCHHHH-HHHHHHHHHcCCCEEEEEeC--HHHHHH--cC-CEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 34467777788753212 22222334578899888752 111111 11 1235777888899999998754 4444
Q ss_pred HHH
Q 019498 202 IYS 204 (340)
Q Consensus 202 v~~ 204 (340)
+.+
T Consensus 152 L~~ 154 (156)
T PF02421_consen 152 LKD 154 (156)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 383
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=20.39 E-value=3.4e+02 Score=24.34 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=32.8
Q ss_pred hhhhhhhcCceEEEEc-----CCCHHHHHHHHHHHHHHhHccCCCEEEEEEE
Q 019498 180 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEALT 226 (340)
Q Consensus 180 ~~~~a~a~G~~~~~Vd-----G~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t 226 (340)
....|+.+|+|..+.| -.|..++.+.++++...+|+ +|.++.....
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh~ 183 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGHP 183 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEcC
Confidence 5578889999988865 36789999999999998888 5777765543
No 384
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=20.34 E-value=1.5e+02 Score=27.00 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHhCCChHHHHHHHHHHCCCCCHHHHHHH
Q 019498 247 IEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 278 (340)
Q Consensus 247 ~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~ 278 (340)
++.|- .-+.+.|+++|++|.+||++.
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~ar 94 (222)
T PF02211_consen 69 YERWL------AALEKLLVEKGVITAEELDAR 94 (222)
T ss_dssp HHHHH------HHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHH
Confidence 56774 568999999999999999976
No 385
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.34 E-value=4.3e+02 Score=21.06 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.8
Q ss_pred HHHHHHhhhcCCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEE
Q 019498 113 VGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 113 ~G~A~a~k~~~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
+...+.......+...+.+-+|.....+.+...|..+...|+.=|-++.
T Consensus 72 L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t 120 (122)
T TIGR02803 72 LGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVG 120 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3334433333344567889999999999999999999999986554443
No 386
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=20.24 E-value=97 Score=25.76 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=31.1
Q ss_pred hcCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 186 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 186 a~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
-||++.-..+ |++.+..++.+|.+. -+-++++...+++.++
T Consensus 13 lygc~~~~L~--D~~~l~~~l~~aa~~----~g~tiv~~~~h~F~p~ 53 (131)
T PRK01236 13 LYGVDPELID--RVEDIREILEGAVKY----AELTKISSHYYQFNPH 53 (131)
T ss_pred EeCCChHHcC--CHHHHHHHHHHHHHH----CCCEEEEEEEEEcCCC
Confidence 3455444455 999999999998874 4678899999998765
No 387
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=20.18 E-value=3.3e+02 Score=25.49 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=34.4
Q ss_pred CCCCeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEEeCC
Q 019498 123 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 164 (340)
Q Consensus 123 ~~~~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~nN~ 164 (340)
+++..++++..-|... ...+++..|...+.|+|.|..+..
T Consensus 88 ~~~d~~i~iS~sG~t~--~~~~~~~~ak~~g~~vI~iT~~~~ 127 (321)
T PRK11543 88 ESRDVMLFISYSGGAK--ELDLIIPRLEDKSIALLAMTGKPT 127 (321)
T ss_pred CCCCEEEEEeCCCCcH--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 5677899999999987 588999999999999999987643
No 388
>PRK06740 histidinol-phosphatase; Validated
Probab=20.13 E-value=4.8e+02 Score=25.05 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=36.2
Q ss_pred CccCccchhhhhhhcCceEEE-EcCCCHHHHHHHHHHHHHHhHccC
Q 019498 173 DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEG 217 (340)
Q Consensus 173 ~~~~~~~~~~~a~a~G~~~~~-VdG~d~~~v~~a~~~a~~~~r~~~ 217 (340)
...+...+.++++.+|++.+. -|.|++.+|-..+.+|.+.+++.+
T Consensus 269 e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G 314 (331)
T PRK06740 269 EMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHG 314 (331)
T ss_pred CCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcC
Confidence 344556788999999999655 689999999888888888888764
No 389
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=20.12 E-value=1.3e+02 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.1
Q ss_pred cCceEEEEcCCCHHHHHHHHHHHHHHhHccCCCEEEEEEEecCCCC
Q 019498 187 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 232 (340)
Q Consensus 187 ~G~~~~~VdG~d~~~v~~a~~~a~~~~r~~~~P~lIe~~t~R~~gH 232 (340)
||++.-..+ |++.+..++.+|.+. -+-+++....+++.++
T Consensus 12 y~c~~~~L~--d~~~l~~~l~~a~~~----~g~ti~~~~~h~F~p~ 51 (112)
T TIGR03330 12 YGCDPEKLD--DVEFIEEILLEAAKV----AGATLVASHFHKFSPG 51 (112)
T ss_pred eCCChHHCC--CHHHHHHHHHHHHHH----cCCEEEEEEEEEcCCC
Confidence 444444445 999999999999874 4678899999998765
No 390
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.09 E-value=1.4e+02 Score=23.93 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=21.9
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEEE
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 161 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv~ 161 (340)
...|+..||.+..+| ++.-+.-.....|.+.|+.
T Consensus 51 ~~fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 51 TRMLFWACSVAKPEG--YRVSQALRERTYPFLAMIM 84 (116)
T ss_pred cCEEEEEEecCChHH--HHHHHHhCCCCCCEEEEEE
Confidence 358999999998876 3333333334559877763
No 391
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=20.07 E-value=2.2e+02 Score=27.83 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=26.2
Q ss_pred CeEEEEECCcccCcchHHHHHHHHHhCCCCEEEEE--EeCCcc
Q 019498 126 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC--RNNGWA 166 (340)
Q Consensus 126 ~~vv~~~GDG~~~~G~~~Eal~~A~~~~Lpvi~vv--~nN~~~ 166 (340)
.-.|++-||||.. -+..++..+++|+|-|- .+|...
T Consensus 96 d~LvvIGGDgS~~-----gA~~Lae~~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 96 DALVVIGGDGSYT-----GAALLAEEGGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CEEEEECCCChHH-----HHHHHHHhcCCcEEecCCCccCCCc
Confidence 3578888999985 35677888889998883 455544
Done!