Query 019499
Match_columns 340
No_of_seqs 240 out of 1188
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 3E-63 6.4E-68 448.2 14.4 166 1-168 1-188 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 8.8E-14 1.9E-18 105.7 9.4 64 244-307 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 4.2E-13 9.1E-18 102.2 8.8 62 246-307 3-64 (65)
4 KOG3584 cAMP response element 99.3 2.4E-12 5.2E-17 123.6 8.6 63 238-300 281-343 (348)
5 KOG4005 Transcription factor X 99.3 2.3E-11 5E-16 114.3 10.7 80 246-327 67-146 (292)
6 KOG4343 bZIP transcription fac 99.2 5.4E-11 1.2E-15 121.8 10.0 71 241-311 274-344 (655)
7 KOG0709 CREB/ATF family transc 99.2 2.9E-11 6.2E-16 122.2 7.2 76 242-317 245-320 (472)
8 PF07716 bZIP_2: Basic region 99.2 1.7E-10 3.7E-15 85.2 8.8 50 248-298 5-54 (54)
9 KOG0837 Transcriptional activa 98.7 5.6E-08 1.2E-12 92.6 9.5 69 236-304 194-262 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.5 1.9E-09 4.2E-14 87.7 -6.5 67 243-309 25-91 (92)
11 KOG4571 Activating transcripti 98.3 2.5E-06 5.4E-11 82.7 10.1 57 249-305 228-284 (294)
12 KOG3119 Basic region leucine z 98.2 7.3E-06 1.6E-10 78.7 8.6 59 248-306 194-252 (269)
13 PF07777 MFMR: G-box binding p 98.0 3.3E-05 7.1E-10 71.1 9.1 134 30-183 22-185 (189)
14 KOG4196 bZIP transcription fac 97.7 0.00037 7.9E-09 60.8 9.8 68 245-319 50-117 (135)
15 KOG3863 bZIP transcription fac 97.6 9.4E-05 2E-09 78.0 6.8 73 247-319 489-562 (604)
16 PF06156 DUF972: Protein of un 96.9 0.0053 1.2E-07 51.9 7.8 50 269-318 8-57 (107)
17 PRK10884 SH3 domain-containing 96.8 0.016 3.4E-07 54.1 11.5 48 267-314 123-170 (206)
18 PRK13169 DNA replication intia 96.7 0.0092 2E-07 50.8 7.9 49 269-317 8-56 (110)
19 TIGR02449 conserved hypothetic 96.6 0.016 3.5E-07 45.1 8.1 57 269-327 7-63 (65)
20 PF06005 DUF904: Protein of un 96.5 0.017 3.7E-07 45.7 8.1 28 271-298 6-33 (72)
21 TIGR02894 DNA_bind_RsfA transc 96.5 0.0095 2.1E-07 53.8 7.4 52 277-330 98-149 (161)
22 PF10224 DUF2205: Predicted co 96.5 0.016 3.5E-07 46.8 7.8 49 271-319 18-66 (80)
23 COG3074 Uncharacterized protei 96.3 0.021 4.6E-07 45.2 7.4 57 270-328 19-75 (79)
24 KOG4005 Transcription factor X 96.1 0.056 1.2E-06 51.9 10.6 59 269-327 97-155 (292)
25 PRK15422 septal ring assembly 96.0 0.04 8.7E-07 44.4 7.7 59 269-329 18-76 (79)
26 PF06005 DUF904: Protein of un 96.0 0.052 1.1E-06 42.9 8.2 47 270-316 19-65 (72)
27 KOG1414 Transcriptional activa 95.8 0.00036 7.9E-09 70.4 -5.8 67 240-306 146-216 (395)
28 PRK10884 SH3 domain-containing 95.6 0.18 3.8E-06 47.2 11.4 55 267-321 116-170 (206)
29 PF02183 HALZ: Homeobox associ 95.6 0.035 7.6E-07 40.2 5.3 37 281-317 3-39 (45)
30 PF13747 DUF4164: Domain of un 95.5 0.31 6.8E-06 39.9 11.3 75 243-317 6-80 (89)
31 PRK13729 conjugal transfer pil 95.5 0.066 1.4E-06 55.7 9.0 49 269-317 76-124 (475)
32 PF08614 ATG16: Autophagy prot 95.4 0.21 4.6E-06 45.6 11.1 71 249-319 117-187 (194)
33 PF04102 SlyX: SlyX; InterPro 95.3 0.088 1.9E-06 40.9 7.2 51 268-318 3-53 (69)
34 TIGR02449 conserved hypothetic 95.3 0.09 2E-06 41.0 7.1 47 271-317 2-48 (65)
35 COG3074 Uncharacterized protei 95.3 0.1 2.2E-06 41.5 7.5 53 267-319 23-75 (79)
36 COG4467 Regulator of replicati 95.2 0.08 1.7E-06 45.1 7.1 47 269-315 8-54 (114)
37 COG4026 Uncharacterized protei 95.1 0.13 2.9E-06 49.1 8.8 54 265-318 138-191 (290)
38 PF02183 HALZ: Homeobox associ 94.8 0.12 2.6E-06 37.4 6.2 42 273-314 2-43 (45)
39 KOG1853 LIS1-interacting prote 94.8 0.34 7.3E-06 47.2 10.9 78 252-331 28-123 (333)
40 PF10473 CENP-F_leu_zip: Leuci 94.7 0.64 1.4E-05 41.2 11.7 69 249-317 32-100 (140)
41 PF11559 ADIP: Afadin- and alp 94.7 0.51 1.1E-05 41.2 11.0 70 248-317 45-114 (151)
42 PRK15422 septal ring assembly 94.6 0.18 3.9E-06 40.7 7.3 51 268-318 24-74 (79)
43 PRK04325 hypothetical protein; 94.6 0.25 5.4E-06 39.1 8.0 49 269-317 9-57 (74)
44 PRK02793 phi X174 lysis protei 94.6 0.25 5.3E-06 39.0 7.9 49 269-317 8-56 (72)
45 PRK00295 hypothetical protein; 94.6 0.26 5.7E-06 38.4 8.0 49 269-317 5-53 (68)
46 PRK02119 hypothetical protein; 94.5 0.26 5.6E-06 39.0 8.0 50 268-317 8-57 (73)
47 PRK00736 hypothetical protein; 94.5 0.27 5.8E-06 38.4 7.9 49 269-317 5-53 (68)
48 PRK04406 hypothetical protein; 94.4 0.31 6.7E-06 38.8 8.1 49 269-317 11-59 (75)
49 KOG1962 B-cell receptor-associ 94.1 0.33 7.2E-06 45.9 9.1 51 265-315 161-211 (216)
50 KOG4196 bZIP transcription fac 94.1 0.43 9.4E-06 42.0 9.1 32 286-317 77-108 (135)
51 PF06156 DUF972: Protein of un 94.1 0.25 5.3E-06 41.9 7.5 53 273-327 5-57 (107)
52 PRK11637 AmiB activator; Provi 94.1 0.65 1.4E-05 47.1 11.9 57 261-317 67-123 (428)
53 PF04880 NUDE_C: NUDE protein, 94.1 0.08 1.7E-06 48.2 4.8 43 271-317 2-44 (166)
54 TIGR00219 mreC rod shape-deter 94.1 0.11 2.4E-06 50.4 6.1 40 277-316 67-110 (283)
55 PF07888 CALCOCO1: Calcium bin 94.0 0.61 1.3E-05 49.5 11.7 64 253-316 155-218 (546)
56 PRK11637 AmiB activator; Provi 93.7 0.85 1.8E-05 46.3 11.9 43 270-312 83-125 (428)
57 PF11559 ADIP: Afadin- and alp 93.6 0.47 1E-05 41.4 8.7 49 268-316 72-120 (151)
58 PF10186 Atg14: UV radiation r 93.6 0.92 2E-05 42.6 11.3 50 265-314 59-108 (302)
59 PRK00846 hypothetical protein; 93.6 0.48 1E-05 38.1 7.9 50 268-317 12-61 (77)
60 PRK04406 hypothetical protein; 93.3 0.78 1.7E-05 36.5 8.7 56 271-328 6-61 (75)
61 KOG1414 Transcriptional activa 93.0 0.017 3.7E-07 58.4 -1.5 56 249-310 286-341 (395)
62 PRK02119 hypothetical protein; 93.0 0.91 2E-05 35.9 8.6 57 270-328 3-59 (73)
63 KOG3119 Basic region leucine z 93.0 0.43 9.4E-06 46.1 8.1 54 263-316 195-248 (269)
64 COG2433 Uncharacterized conser 93.0 0.35 7.6E-06 51.7 8.0 46 269-314 422-467 (652)
65 PRK13922 rod shape-determining 92.9 0.67 1.5E-05 44.1 9.3 39 278-316 71-112 (276)
66 COG4026 Uncharacterized protei 92.9 0.51 1.1E-05 45.3 8.1 42 273-314 139-180 (290)
67 PF11932 DUF3450: Protein of u 92.8 1.8 3.9E-05 40.9 11.9 54 263-316 50-103 (251)
68 smart00338 BRLZ basic region l 92.8 1 2.2E-05 34.1 8.3 40 275-314 25-64 (65)
69 PF03962 Mnd1: Mnd1 family; I 92.6 0.65 1.4E-05 42.7 8.4 18 297-314 110-127 (188)
70 TIGR02209 ftsL_broad cell divi 92.6 0.41 8.9E-06 37.6 6.2 44 283-326 24-67 (85)
71 PF09726 Macoilin: Transmembra 92.6 0.93 2E-05 49.5 10.8 42 271-312 540-581 (697)
72 KOG1029 Endocytic adaptor prot 92.6 1.1 2.4E-05 49.4 11.2 12 35-46 82-93 (1118)
73 PF04977 DivIC: Septum formati 92.6 0.33 7.2E-06 37.2 5.5 25 271-295 26-50 (80)
74 PF08172 CASP_C: CASP C termin 92.4 0.56 1.2E-05 45.1 7.9 38 281-318 98-135 (248)
75 PRK13169 DNA replication intia 92.3 0.68 1.5E-05 39.5 7.5 51 273-325 5-55 (110)
76 PF07106 TBPIP: Tat binding pr 92.3 0.46 1E-05 42.3 6.8 52 267-318 84-137 (169)
77 COG1579 Zn-ribbon protein, pos 92.3 2 4.4E-05 41.3 11.4 36 257-292 40-75 (239)
78 PF07106 TBPIP: Tat binding pr 92.1 0.52 1.1E-05 42.0 6.9 25 272-296 82-106 (169)
79 KOG2264 Exostosin EXT1L [Signa 92.1 0.77 1.7E-05 49.2 9.0 60 268-329 92-151 (907)
80 KOG3650 Predicted coiled-coil 92.0 0.68 1.5E-05 39.3 7.0 45 275-319 62-106 (120)
81 PRK00888 ftsB cell division pr 91.9 0.65 1.4E-05 39.0 6.9 34 265-298 30-63 (105)
82 PF04156 IncA: IncA protein; 91.9 3.1 6.7E-05 37.2 11.8 57 261-317 122-178 (191)
83 PF14197 Cep57_CLD_2: Centroso 91.9 1.2 2.6E-05 35.0 7.8 47 270-316 13-66 (69)
84 TIGR03752 conj_TIGR03752 integ 91.8 0.58 1.3E-05 48.8 7.8 35 281-315 107-141 (472)
85 PRK02793 phi X174 lysis protei 91.8 1.5 3.3E-05 34.5 8.5 56 272-329 4-59 (72)
86 PF13851 GAS: Growth-arrest sp 91.8 3 6.5E-05 38.7 11.8 62 242-303 66-127 (201)
87 KOG1029 Endocytic adaptor prot 91.8 1.4 3E-05 48.7 10.7 16 301-316 441-456 (1118)
88 PF00170 bZIP_1: bZIP transcri 91.8 2.2 4.8E-05 32.1 9.1 38 276-313 26-63 (64)
89 PF11932 DUF3450: Protein of u 91.8 2.9 6.3E-05 39.5 11.9 50 268-317 48-97 (251)
90 KOG3335 Predicted coiled-coil 91.7 0.24 5.1E-06 45.6 4.3 43 248-296 91-133 (181)
91 PF04102 SlyX: SlyX; InterPro 91.6 1.1 2.5E-05 34.7 7.5 52 273-326 1-52 (69)
92 PF12718 Tropomyosin_1: Tropom 91.6 0.95 2.1E-05 39.9 7.9 42 272-313 17-58 (143)
93 PRK10803 tol-pal system protei 91.6 1.4 3.1E-05 42.3 9.8 46 271-316 56-101 (263)
94 KOG0982 Centrosomal protein Nu 91.6 1.6 3.5E-05 45.2 10.5 49 269-317 297-345 (502)
95 PF12711 Kinesin-relat_1: Kine 91.5 0.81 1.8E-05 37.6 6.8 38 280-317 21-64 (86)
96 COG4942 Membrane-bound metallo 91.5 1.6 3.5E-05 45.1 10.4 73 248-320 38-110 (420)
97 PRK00846 hypothetical protein; 91.4 1.4 2.9E-05 35.6 7.8 58 272-331 9-66 (77)
98 KOG4343 bZIP transcription fac 91.2 0.8 1.7E-05 48.5 8.1 38 282-319 301-338 (655)
99 PF12329 TMF_DNA_bd: TATA elem 91.1 1.7 3.7E-05 34.3 8.1 59 266-326 9-67 (74)
100 PF05266 DUF724: Protein of un 91.1 2.5 5.3E-05 39.2 10.4 43 250-292 91-133 (190)
101 PF07412 Geminin: Geminin; In 91.0 0.67 1.4E-05 43.4 6.6 12 307-318 159-170 (200)
102 PF09726 Macoilin: Transmembra 90.9 1.8 3.8E-05 47.4 10.6 33 263-299 543-575 (697)
103 PF15294 Leu_zip: Leucine zipp 90.8 0.72 1.6E-05 45.2 6.9 45 274-318 130-174 (278)
104 PF07888 CALCOCO1: Calcium bin 90.7 3.3 7.2E-05 44.1 12.1 48 269-316 178-225 (546)
105 PF10186 Atg14: UV radiation r 90.5 3.7 8E-05 38.5 11.3 35 265-299 66-100 (302)
106 COG2900 SlyX Uncharacterized p 90.5 2.2 4.7E-05 34.1 8.0 50 269-318 8-57 (72)
107 TIGR02894 DNA_bind_RsfA transc 90.5 3 6.6E-05 37.9 10.1 35 269-303 111-145 (161)
108 PF08172 CASP_C: CASP C termin 90.4 1.1 2.4E-05 43.1 7.6 43 269-311 93-135 (248)
109 KOG0250 DNA repair protein RAD 90.3 2.3 5E-05 48.3 11.1 59 259-317 369-428 (1074)
110 PF08317 Spc7: Spc7 kinetochor 90.3 3.1 6.7E-05 41.0 11.0 48 269-316 209-256 (325)
111 PF09304 Cortex-I_coil: Cortex 90.3 1.5 3.3E-05 37.3 7.5 53 253-305 21-73 (107)
112 PRK04325 hypothetical protein; 90.2 1.8 3.8E-05 34.3 7.4 55 271-327 4-58 (74)
113 PF05377 FlaC_arch: Flagella a 90.2 1.4 3E-05 33.5 6.4 38 271-308 2-39 (55)
114 PF01166 TSC22: TSC-22/dip/bun 90.2 0.32 6.8E-06 37.3 3.0 41 283-327 14-54 (59)
115 PF12325 TMF_TATA_bd: TATA ele 90.2 1.6 3.5E-05 37.7 7.8 66 244-309 19-87 (120)
116 COG3883 Uncharacterized protei 90.1 1.3 2.8E-05 43.2 7.9 58 260-317 50-111 (265)
117 PF09738 DUF2051: Double stran 90.1 1.3 2.8E-05 43.8 8.1 73 244-316 88-166 (302)
118 PF05266 DUF724: Protein of un 90.0 5 0.00011 37.2 11.4 48 268-315 130-177 (190)
119 PF10805 DUF2730: Protein of u 90.0 1.5 3.3E-05 36.7 7.4 44 273-316 46-91 (106)
120 PF04111 APG6: Autophagy prote 90.0 5.4 0.00012 39.5 12.3 42 271-312 80-121 (314)
121 PF04728 LPP: Lipoprotein leuc 90.0 3.1 6.7E-05 31.7 8.2 47 269-315 3-49 (56)
122 COG1579 Zn-ribbon protein, pos 89.9 3.7 8.1E-05 39.5 10.8 50 268-317 88-137 (239)
123 PF14197 Cep57_CLD_2: Centroso 89.9 2.2 4.8E-05 33.5 7.6 28 271-298 7-34 (69)
124 PRK00888 ftsB cell division pr 89.9 1.4 3E-05 37.0 7.0 34 271-304 29-62 (105)
125 PF08647 BRE1: BRE1 E3 ubiquit 89.8 7.3 0.00016 32.0 11.1 68 250-317 5-72 (96)
126 PRK00295 hypothetical protein; 89.7 2.3 5E-05 33.1 7.7 51 274-326 3-53 (68)
127 PF12709 Kinetocho_Slk19: Cent 89.7 1.9 4.1E-05 35.6 7.4 44 267-310 40-83 (87)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.7 7.2 0.00016 33.6 11.5 33 284-316 99-131 (132)
129 COG4467 Regulator of replicati 89.5 1.5 3.3E-05 37.5 6.9 50 273-324 5-54 (114)
130 PF14662 CCDC155: Coiled-coil 89.5 2.2 4.7E-05 39.9 8.6 42 272-313 98-139 (193)
131 PF10473 CENP-F_leu_zip: Leuci 89.4 6.7 0.00015 34.8 11.2 49 279-329 55-103 (140)
132 PF04999 FtsL: Cell division p 89.3 1.2 2.6E-05 36.0 6.1 46 281-326 33-78 (97)
133 PF10211 Ax_dynein_light: Axon 89.3 2.3 5E-05 39.1 8.6 47 271-317 122-168 (189)
134 PF05103 DivIVA: DivIVA protei 89.2 0.21 4.4E-06 42.0 1.6 48 269-316 25-72 (131)
135 PF05377 FlaC_arch: Flagella a 89.2 1.4 3E-05 33.4 5.8 39 278-316 2-40 (55)
136 PF08826 DMPK_coil: DMPK coile 89.0 4.1 8.9E-05 31.4 8.4 43 275-317 17-59 (61)
137 PF06785 UPF0242: Uncharacteri 89.0 3.9 8.4E-05 41.4 10.4 52 265-316 123-174 (401)
138 PF10211 Ax_dynein_light: Axon 88.9 3.6 7.8E-05 37.8 9.6 48 268-315 126-188 (189)
139 PF04849 HAP1_N: HAP1 N-termin 88.8 1.1 2.5E-05 44.4 6.6 37 281-317 211-247 (306)
140 PF05700 BCAS2: Breast carcino 88.6 5.8 0.00013 37.1 10.9 55 263-318 163-217 (221)
141 KOG0995 Centromere-associated 88.5 3.5 7.6E-05 44.1 10.3 49 268-316 279-327 (581)
142 PF13815 Dzip-like_N: Iguana/D 88.4 1.6 3.5E-05 37.0 6.5 37 276-312 80-116 (118)
143 PF05278 PEARLI-4: Arabidopsis 88.4 8.4 0.00018 37.7 12.1 50 268-317 206-255 (269)
144 PF12325 TMF_TATA_bd: TATA ele 88.4 3.3 7E-05 35.8 8.4 39 278-316 70-108 (120)
145 KOG0804 Cytoplasmic Zn-finger 88.3 4.9 0.00011 42.0 10.9 79 251-331 367-453 (493)
146 PF13870 DUF4201: Domain of un 88.2 7.6 0.00017 34.7 11.0 59 269-327 91-149 (177)
147 PRK14127 cell division protein 88.0 0.86 1.9E-05 38.9 4.5 41 269-309 30-70 (109)
148 PF07716 bZIP_2: Basic region 88.0 6.6 0.00014 28.8 8.7 24 286-309 28-51 (54)
149 PF06216 RTBV_P46: Rice tungro 88.0 2.4 5.3E-05 41.5 8.1 44 274-317 69-112 (389)
150 PRK10803 tol-pal system protei 88.0 1.6 3.4E-05 42.0 6.9 53 262-314 54-106 (263)
151 KOG0977 Nuclear envelope prote 88.0 2 4.4E-05 45.7 8.2 60 259-318 131-190 (546)
152 PF05529 Bap31: B-cell recepto 87.9 3.9 8.4E-05 37.0 9.0 37 281-317 152-188 (192)
153 COG3883 Uncharacterized protei 87.7 2.3 5E-05 41.5 7.8 53 265-317 48-100 (265)
154 PF07989 Microtub_assoc: Micro 87.7 3 6.4E-05 33.2 7.2 29 272-300 3-31 (75)
155 PF08614 ATG16: Autophagy prot 87.7 7.2 0.00016 35.6 10.7 18 297-314 151-168 (194)
156 KOG1962 B-cell receptor-associ 87.6 4.2 9.2E-05 38.6 9.3 44 274-317 149-192 (216)
157 PRK00736 hypothetical protein; 87.6 2.9 6.3E-05 32.6 6.9 53 273-327 2-54 (68)
158 PHA02562 46 endonuclease subun 87.5 5.8 0.00013 40.9 11.2 11 292-302 381-391 (562)
159 PF08826 DMPK_coil: DMPK coile 87.3 9.5 0.00021 29.4 9.5 37 268-304 24-60 (61)
160 PF14662 CCDC155: Coiled-coil 87.3 2.4 5.2E-05 39.6 7.3 40 277-316 9-48 (193)
161 KOG1103 Predicted coiled-coil 87.3 2.4 5.2E-05 43.2 7.9 61 258-318 227-287 (561)
162 KOG0977 Nuclear envelope prote 87.3 5.1 0.00011 42.8 10.6 61 253-313 132-192 (546)
163 PF09744 Jnk-SapK_ap_N: JNK_SA 87.2 7.1 0.00015 35.3 10.2 23 281-303 87-109 (158)
164 PF08232 Striatin: Striatin fa 87.1 4.2 9.1E-05 35.5 8.4 56 268-323 24-79 (134)
165 KOG2391 Vacuolar sorting prote 87.1 2.9 6.3E-05 42.2 8.2 50 266-315 229-278 (365)
166 PF04977 DivIC: Septum formati 87.0 2.7 5.9E-05 32.1 6.5 39 286-324 20-59 (80)
167 smart00340 HALZ homeobox assoc 87.0 1.2 2.6E-05 32.2 4.0 27 292-318 7-33 (44)
168 PF12808 Mto2_bdg: Micro-tubul 86.8 2.5 5.5E-05 31.7 5.9 48 267-317 2-49 (52)
169 KOG4571 Activating transcripti 86.7 3.7 8E-05 40.6 8.6 33 268-300 254-286 (294)
170 PF04156 IncA: IncA protein; 86.6 13 0.00028 33.3 11.6 47 271-317 125-171 (191)
171 PTZ00454 26S protease regulato 86.5 2.7 5.8E-05 42.8 7.9 47 285-331 31-78 (398)
172 PF09744 Jnk-SapK_ap_N: JNK_SA 86.4 6.4 0.00014 35.5 9.4 46 272-317 92-137 (158)
173 PRK03992 proteasome-activating 86.3 2.1 4.5E-05 43.1 7.0 60 272-331 4-64 (389)
174 KOG0971 Microtubule-associated 86.3 7.9 0.00017 43.8 11.7 31 286-316 328-358 (1243)
175 TIGR03545 conserved hypothetic 86.0 5.2 0.00011 42.7 10.0 69 245-313 167-242 (555)
176 PF15035 Rootletin: Ciliary ro 86.0 3.2 6.9E-05 38.2 7.4 42 275-316 73-114 (182)
177 KOG0946 ER-Golgi vesicle-tethe 86.0 7.2 0.00016 43.5 11.1 65 253-317 655-719 (970)
178 PF09755 DUF2046: Uncharacteri 85.9 2.5 5.4E-05 42.1 7.1 21 270-290 42-62 (310)
179 KOG1318 Helix loop helix trans 85.9 9.7 0.00021 39.4 11.5 32 245-276 226-257 (411)
180 PF10226 DUF2216: Uncharacteri 85.8 7.3 0.00016 36.5 9.6 18 244-261 19-36 (195)
181 PF11180 DUF2968: Protein of u 85.7 13 0.00029 34.8 11.3 85 244-331 102-186 (192)
182 KOG4001 Axonemal dynein light 85.7 9.4 0.0002 36.4 10.4 28 292-319 230-257 (259)
183 PF13118 DUF3972: Protein of u 85.6 4.1 8.8E-05 35.7 7.4 46 271-316 80-125 (126)
184 KOG2010 Double stranded RNA bi 85.5 3.4 7.4E-05 41.6 7.8 49 268-316 153-201 (405)
185 PF12808 Mto2_bdg: Micro-tubul 85.4 2.7 5.9E-05 31.5 5.4 32 266-297 19-50 (52)
186 PF07407 Seadorna_VP6: Seadorn 85.2 1.6 3.4E-05 44.0 5.3 19 284-302 40-58 (420)
187 KOG2391 Vacuolar sorting prote 85.1 6.9 0.00015 39.6 9.7 64 243-308 215-278 (365)
188 PF04728 LPP: Lipoprotein leuc 85.1 5.2 0.00011 30.5 6.9 41 276-316 3-43 (56)
189 PRK14143 heat shock protein Gr 84.9 3.1 6.8E-05 39.9 7.1 21 272-292 84-104 (238)
190 PF15556 Zwint: ZW10 interacto 84.7 15 0.00033 34.9 11.3 59 255-313 120-178 (252)
191 PRK13729 conjugal transfer pil 84.7 3.2 7E-05 43.5 7.5 51 268-318 82-132 (475)
192 TIGR02231 conserved hypothetic 84.7 11 0.00025 39.2 11.7 47 272-318 127-173 (525)
193 PF04871 Uso1_p115_C: Uso1 / p 84.5 19 0.00041 31.6 11.2 50 268-317 54-111 (136)
194 PF09789 DUF2353: Uncharacteri 84.4 9.4 0.0002 38.2 10.4 47 272-318 68-114 (319)
195 PRK14158 heat shock protein Gr 84.4 3.4 7.3E-05 38.5 6.9 26 269-294 54-79 (194)
196 PF14282 FlxA: FlxA-like prote 84.4 4.3 9.3E-05 34.0 6.9 48 271-318 28-79 (106)
197 PF12709 Kinetocho_Slk19: Cent 84.2 3.5 7.6E-05 34.0 6.1 27 289-315 48-74 (87)
198 COG1792 MreC Cell shape-determ 84.1 3 6.6E-05 40.7 6.8 48 267-318 64-111 (284)
199 KOG4797 Transcriptional regula 84.0 2.4 5.3E-05 36.4 5.2 26 285-310 69-94 (123)
200 PRK14139 heat shock protein Gr 84.0 3.5 7.6E-05 38.1 6.8 9 276-284 53-61 (185)
201 PF10146 zf-C4H2: Zinc finger- 84.0 15 0.00033 35.0 11.2 43 275-317 59-101 (230)
202 PF11500 Cut12: Spindle pole b 83.9 10 0.00022 34.2 9.4 56 245-300 81-136 (152)
203 PF10805 DUF2730: Protein of u 83.8 13 0.00028 31.1 9.5 50 267-316 47-98 (106)
204 PRK03918 chromosome segregatio 83.8 12 0.00026 41.0 11.8 10 273-282 204-213 (880)
205 PF13815 Dzip-like_N: Iguana/D 83.8 4 8.7E-05 34.6 6.6 39 279-317 76-114 (118)
206 PF01486 K-box: K-box region; 83.8 18 0.0004 29.5 10.3 46 269-314 49-99 (100)
207 PF10669 Phage_Gp23: Protein g 83.7 12 0.00026 31.9 9.1 23 240-262 47-69 (121)
208 PRK14155 heat shock protein Gr 83.7 2.5 5.5E-05 39.7 5.8 21 272-292 30-50 (208)
209 KOG0980 Actin-binding protein 83.6 12 0.00027 42.0 11.6 80 247-328 444-523 (980)
210 PF13851 GAS: Growth-arrest sp 83.4 21 0.00046 33.1 11.7 29 289-317 92-120 (201)
211 COG1382 GimC Prefoldin, chaper 83.4 5.4 0.00012 34.6 7.2 36 267-302 68-103 (119)
212 PF10224 DUF2205: Predicted co 83.2 6.9 0.00015 31.7 7.3 34 271-304 32-65 (80)
213 PF07558 Shugoshin_N: Shugoshi 83.1 1.2 2.5E-05 32.4 2.6 33 281-313 12-44 (46)
214 PF12718 Tropomyosin_1: Tropom 83.1 7 0.00015 34.5 8.0 35 265-299 31-65 (143)
215 PRK14140 heat shock protein Gr 83.0 3.2 7E-05 38.5 6.1 32 271-302 39-70 (191)
216 PF15058 Speriolin_N: Sperioli 83.0 2.9 6.2E-05 39.2 5.7 38 271-316 7-44 (200)
217 cd07596 BAR_SNX The Bin/Amphip 82.9 17 0.00036 32.2 10.6 49 252-300 114-169 (218)
218 COG2433 Uncharacterized conser 82.7 16 0.00035 39.6 11.7 28 270-297 437-464 (652)
219 TIGR02977 phageshock_pspA phag 82.6 11 0.00024 35.0 9.7 51 268-318 98-148 (219)
220 PF05667 DUF812: Protein of un 82.6 4.8 0.0001 43.3 8.1 44 271-314 337-380 (594)
221 PF09304 Cortex-I_coil: Cortex 82.6 28 0.0006 29.8 11.0 43 269-311 30-72 (107)
222 PF01166 TSC22: TSC-22/dip/bun 82.4 1.6 3.5E-05 33.5 3.2 26 271-296 16-41 (59)
223 PF02403 Seryl_tRNA_N: Seryl-t 82.4 7.7 0.00017 31.8 7.6 28 288-315 72-99 (108)
224 PF07558 Shugoshin_N: Shugoshi 82.4 1.3 2.8E-05 32.1 2.6 43 249-292 2-44 (46)
225 PF02403 Seryl_tRNA_N: Seryl-t 82.4 15 0.00033 30.0 9.3 10 305-314 75-84 (108)
226 PF15030 DUF4527: Protein of u 82.2 14 0.00031 35.9 10.2 58 244-301 11-69 (277)
227 PRK14160 heat shock protein Gr 82.0 5.4 0.00012 37.7 7.3 60 272-331 64-123 (211)
228 PF03980 Nnf1: Nnf1 ; InterPr 82.0 2.2 4.8E-05 35.3 4.2 30 267-296 78-107 (109)
229 COG2900 SlyX Uncharacterized p 82.0 9.8 0.00021 30.4 7.5 58 271-330 3-60 (72)
230 PF05278 PEARLI-4: Arabidopsis 81.9 29 0.00062 34.1 12.4 47 271-317 202-248 (269)
231 PF04871 Uso1_p115_C: Uso1 / p 81.9 31 0.00067 30.2 11.5 10 320-329 105-114 (136)
232 PF15397 DUF4618: Domain of un 81.9 21 0.00045 34.9 11.4 72 245-318 141-221 (258)
233 PF04880 NUDE_C: NUDE protein, 81.8 1.1 2.5E-05 40.7 2.7 30 284-314 25-54 (166)
234 PF00038 Filament: Intermediat 81.5 20 0.00042 34.4 11.2 39 278-316 211-249 (312)
235 PF04859 DUF641: Plant protein 81.5 4.7 0.0001 35.5 6.2 43 270-312 88-130 (131)
236 PF06210 DUF1003: Protein of u 81.4 7 0.00015 33.2 7.1 51 253-308 55-105 (108)
237 PTZ00454 26S protease regulato 81.1 6.3 0.00014 40.1 8.0 38 274-311 27-64 (398)
238 KOG0971 Microtubule-associated 81.0 12 0.00026 42.4 10.4 47 272-318 328-389 (1243)
239 smart00340 HALZ homeobox assoc 81.0 3.5 7.6E-05 29.8 4.3 27 270-296 6-32 (44)
240 PF05529 Bap31: B-cell recepto 80.9 9.6 0.00021 34.5 8.3 9 295-303 173-181 (192)
241 PF11544 Spc42p: Spindle pole 80.8 13 0.00028 30.1 7.9 44 273-316 9-52 (76)
242 smart00787 Spc7 Spc7 kinetocho 80.4 20 0.00044 35.5 11.0 47 270-316 205-251 (312)
243 PF07889 DUF1664: Protein of u 80.4 19 0.00041 31.5 9.6 50 268-317 67-116 (126)
244 TIGR00606 rad50 rad50. This fa 80.2 14 0.00031 42.9 11.3 21 259-279 847-867 (1311)
245 TIGR02209 ftsL_broad cell divi 80.2 6.5 0.00014 30.7 6.1 31 266-296 28-58 (85)
246 KOG0933 Structural maintenance 80.1 16 0.00035 41.7 11.1 52 266-317 812-863 (1174)
247 PRK09039 hypothetical protein; 80.0 22 0.00048 35.6 11.2 39 277-315 138-176 (343)
248 PF10226 DUF2216: Uncharacteri 80.0 9 0.00019 35.9 7.8 29 289-317 114-142 (195)
249 PRK04863 mukB cell division pr 79.9 17 0.00037 43.2 11.9 19 249-267 322-340 (1486)
250 PF10205 KLRAQ: Predicted coil 79.9 19 0.0004 30.6 9.0 18 298-315 48-65 (102)
251 PF03670 UPF0184: Uncharacteri 79.8 13 0.00028 30.5 7.8 47 271-317 28-74 (83)
252 PLN02678 seryl-tRNA synthetase 79.6 37 0.0008 35.5 13.0 27 288-314 76-102 (448)
253 PF11180 DUF2968: Protein of u 79.3 19 0.00041 33.8 9.7 34 272-305 150-183 (192)
254 PF08961 DUF1875: Domain of un 79.2 0.61 1.3E-05 44.4 0.0 45 265-309 118-162 (243)
255 PF14645 Chibby: Chibby family 79.1 7.7 0.00017 33.3 6.7 42 272-313 74-115 (116)
256 KOG0982 Centrosomal protein Nu 79.0 18 0.00039 37.9 10.3 56 263-320 279-334 (502)
257 PRK02224 chromosome segregatio 79.0 22 0.00048 39.1 11.9 12 270-281 510-521 (880)
258 COG4717 Uncharacterized conser 78.9 13 0.00028 41.8 9.9 72 257-328 729-819 (984)
259 TIGR02680 conserved hypothetic 78.9 22 0.00048 41.7 12.4 57 269-325 276-332 (1353)
260 PF05812 Herpes_BLRF2: Herpesv 78.9 3.5 7.5E-05 35.8 4.5 30 267-296 1-30 (118)
261 PF10779 XhlA: Haemolysin XhlA 78.8 10 0.00022 29.4 6.7 41 271-311 15-55 (71)
262 PRK14153 heat shock protein Gr 78.4 5.2 0.00011 37.3 5.8 26 269-294 47-72 (194)
263 PF00038 Filament: Intermediat 78.3 34 0.00075 32.8 11.7 38 259-296 213-250 (312)
264 PRK05431 seryl-tRNA synthetase 78.3 35 0.00076 35.1 12.4 24 290-313 73-96 (425)
265 KOG3248 Transcription factor T 78.2 7.8 0.00017 39.3 7.3 54 25-81 71-128 (421)
266 TIGR03752 conj_TIGR03752 integ 78.1 19 0.00041 37.9 10.3 24 294-317 113-136 (472)
267 TIGR03185 DNA_S_dndD DNA sulfu 78.0 23 0.0005 38.1 11.4 46 270-315 422-467 (650)
268 PF11365 DUF3166: Protein of u 77.9 8 0.00017 32.4 6.2 44 271-314 3-46 (96)
269 PF13935 Ead_Ea22: Ead/Ea22-li 77.8 16 0.00034 31.9 8.4 47 269-315 90-137 (139)
270 PF14988 DUF4515: Domain of un 77.7 39 0.00085 31.6 11.5 48 271-318 151-198 (206)
271 PHA03162 hypothetical protein; 77.7 1.8 4E-05 38.2 2.5 28 266-293 10-37 (135)
272 TIGR02231 conserved hypothetic 77.7 25 0.00055 36.6 11.3 47 278-326 126-172 (525)
273 PRK10698 phage shock protein P 77.6 34 0.00074 32.2 11.2 55 269-323 99-153 (222)
274 KOG2077 JNK/SAPK-associated pr 77.6 5.1 0.00011 43.2 6.1 47 272-318 325-371 (832)
275 cd07596 BAR_SNX The Bin/Amphip 77.6 39 0.00086 29.8 11.1 57 259-315 107-170 (218)
276 PF14817 HAUS5: HAUS augmin-li 77.6 9.1 0.0002 41.6 8.2 41 272-312 82-122 (632)
277 KOG4643 Uncharacterized coiled 77.3 7.9 0.00017 44.1 7.7 29 288-316 528-556 (1195)
278 KOG0999 Microtubule-associated 77.3 21 0.00044 38.7 10.4 41 277-317 171-214 (772)
279 PF04568 IATP: Mitochondrial A 77.3 14 0.0003 31.2 7.5 42 257-298 57-98 (100)
280 PF06810 Phage_GP20: Phage min 77.2 8.8 0.00019 34.3 6.8 37 264-300 29-68 (155)
281 PF13805 Pil1: Eisosome compon 77.2 14 0.00031 36.2 8.7 51 248-298 127-194 (271)
282 PF15070 GOLGA2L5: Putative go 77.1 16 0.00035 39.6 9.9 74 244-317 97-173 (617)
283 PF05557 MAD: Mitotic checkpoi 77.1 11 0.00023 41.1 8.6 23 297-319 566-588 (722)
284 PF04201 TPD52: Tumour protein 76.9 13 0.00028 34.0 7.7 20 308-327 106-125 (162)
285 PRK14157 heat shock protein Gr 76.7 7.5 0.00016 37.2 6.5 11 266-276 102-112 (227)
286 PF13863 DUF4200: Domain of un 76.7 27 0.00059 29.1 9.3 32 286-317 77-108 (126)
287 PF09738 DUF2051: Double stran 76.6 10 0.00022 37.6 7.7 50 269-318 112-161 (302)
288 PF03962 Mnd1: Mnd1 family; I 76.6 31 0.00066 31.8 10.3 19 267-285 108-126 (188)
289 PF14282 FlxA: FlxA-like prote 76.6 12 0.00026 31.4 7.0 18 268-285 50-67 (106)
290 PRK14160 heat shock protein Gr 76.5 15 0.00033 34.7 8.5 43 271-313 56-98 (211)
291 KOG2891 Surface glycoprotein [ 76.4 29 0.00063 34.7 10.6 21 261-281 354-374 (445)
292 COG4372 Uncharacterized protei 76.2 39 0.00085 35.2 11.7 41 277-317 138-178 (499)
293 KOG0249 LAR-interacting protei 76.1 22 0.00048 39.4 10.4 41 277-317 217-257 (916)
294 PRK03992 proteasome-activating 75.9 8.5 0.00018 38.8 7.1 41 271-311 10-50 (389)
295 PF05911 DUF869: Plant protein 75.9 22 0.00049 39.5 10.7 62 269-330 92-174 (769)
296 TIGR03495 phage_LysB phage lys 75.9 43 0.00093 29.7 10.6 46 281-327 66-111 (135)
297 PF04012 PspA_IM30: PspA/IM30 75.7 22 0.00047 32.7 9.2 47 271-317 100-146 (221)
298 PF04849 HAP1_N: HAP1 N-termin 75.7 22 0.00047 35.5 9.6 46 270-315 242-287 (306)
299 COG1842 PspA Phage shock prote 75.7 59 0.0013 31.0 12.2 45 272-316 95-139 (225)
300 PRK12705 hypothetical protein; 75.6 40 0.00086 35.9 12.1 43 274-316 93-135 (508)
301 COG4942 Membrane-bound metallo 75.5 23 0.0005 36.8 10.1 46 266-311 63-108 (420)
302 TIGR00414 serS seryl-tRNA synt 75.5 26 0.00056 36.0 10.5 28 288-315 74-101 (418)
303 PHA03155 hypothetical protein; 75.5 3.7 7.9E-05 35.5 3.7 25 270-294 9-33 (115)
304 TIGR01554 major_cap_HK97 phage 75.5 15 0.00033 36.4 8.7 26 270-295 35-60 (378)
305 PRK14144 heat shock protein Gr 75.4 9.6 0.00021 35.7 6.7 15 273-287 63-77 (199)
306 PF15035 Rootletin: Ciliary ro 75.2 15 0.00033 33.8 7.9 29 274-302 86-114 (182)
307 KOG0249 LAR-interacting protei 75.1 24 0.00053 39.1 10.4 45 267-311 214-258 (916)
308 KOG2264 Exostosin EXT1L [Signa 75.1 28 0.0006 37.9 10.6 43 273-315 104-146 (907)
309 PF07200 Mod_r: Modifier of ru 74.9 15 0.00033 31.7 7.6 48 253-301 40-87 (150)
310 PRK15396 murein lipoprotein; P 74.9 21 0.00046 28.8 7.7 45 270-314 26-70 (78)
311 PF04899 MbeD_MobD: MbeD/MobD 74.8 15 0.00032 29.1 6.6 31 273-303 32-62 (70)
312 PF10146 zf-C4H2: Zinc finger- 74.8 59 0.0013 31.1 12.0 44 269-312 60-103 (230)
313 PRK11546 zraP zinc resistance 74.7 11 0.00025 33.6 6.7 45 266-310 58-109 (143)
314 PF14916 CCDC92: Coiled-coil d 74.6 6.5 0.00014 30.3 4.5 40 269-311 3-42 (60)
315 PF13935 Ead_Ea22: Ead/Ea22-li 74.2 35 0.00077 29.7 9.7 33 267-299 79-113 (139)
316 PF11365 DUF3166: Protein of u 74.2 12 0.00026 31.4 6.3 38 280-317 5-42 (96)
317 PF07407 Seadorna_VP6: Seadorn 74.1 10 0.00022 38.4 6.9 11 271-281 48-58 (420)
318 COG1196 Smc Chromosome segrega 74.0 29 0.00062 40.0 11.4 25 281-305 451-475 (1163)
319 PF08537 NBP1: Fungal Nap bind 74.0 30 0.00066 34.8 10.1 23 248-270 122-144 (323)
320 PF01920 Prefoldin_2: Prefoldi 73.9 10 0.00022 30.3 5.8 37 280-316 66-102 (106)
321 PF12999 PRKCSH-like: Glucosid 73.8 21 0.00045 33.0 8.4 32 265-296 142-173 (176)
322 KOG0288 WD40 repeat protein Ti 73.7 21 0.00045 37.2 9.1 47 253-299 27-78 (459)
323 KOG0243 Kinesin-like protein [ 73.5 36 0.00077 39.1 11.6 47 266-312 445-491 (1041)
324 PF13805 Pil1: Eisosome compon 73.5 31 0.00067 33.9 9.9 68 248-316 118-191 (271)
325 KOG0483 Transcription factor H 73.5 5.8 0.00013 37.1 4.8 34 282-315 111-144 (198)
326 PF15556 Zwint: ZW10 interacto 73.5 47 0.001 31.8 10.7 64 254-317 112-175 (252)
327 COG1196 Smc Chromosome segrega 73.4 30 0.00064 39.9 11.3 13 28-40 528-540 (1163)
328 PF15136 UPF0449: Uncharacteri 73.4 18 0.00039 30.4 7.2 40 276-315 57-96 (97)
329 COG1730 GIM5 Predicted prefold 73.3 17 0.00037 32.5 7.5 26 286-311 111-136 (145)
330 PF13514 AAA_27: AAA domain 73.3 39 0.00085 38.7 12.2 50 279-328 892-941 (1111)
331 KOG0709 CREB/ATF family transc 73.2 9.9 0.00021 39.8 6.8 40 278-317 274-313 (472)
332 PF05837 CENP-H: Centromere pr 73.2 12 0.00026 31.4 6.2 24 273-296 21-44 (106)
333 PF08912 Rho_Binding: Rho Bind 73.2 16 0.00035 29.0 6.4 33 274-306 1-33 (69)
334 COG2919 Septum formation initi 73.1 14 0.00031 31.4 6.7 36 284-319 51-86 (117)
335 PRK14872 rod shape-determining 73.1 16 0.00034 37.0 8.0 38 277-314 58-98 (337)
336 PRK13923 putative spore coat p 73.0 14 0.0003 34.0 7.0 62 267-330 57-149 (170)
337 COG2919 Septum formation initi 72.9 58 0.0013 27.7 11.6 40 272-311 53-92 (117)
338 PF06810 Phage_GP20: Phage min 72.9 25 0.00054 31.5 8.5 14 272-285 54-67 (155)
339 PF05911 DUF869: Plant protein 72.9 18 0.00039 40.2 9.1 66 262-327 127-221 (769)
340 PRK13922 rod shape-determining 72.8 14 0.00031 35.1 7.4 35 270-304 70-107 (276)
341 PF09789 DUF2353: Uncharacteri 72.7 27 0.00059 35.1 9.5 36 284-319 66-101 (319)
342 PF07200 Mod_r: Modifier of ru 72.6 39 0.00084 29.2 9.5 32 284-315 56-87 (150)
343 PHA03162 hypothetical protein; 72.4 5.3 0.00011 35.3 4.0 29 292-320 15-43 (135)
344 KOG0161 Myosin class II heavy 72.2 29 0.00062 42.4 11.0 67 253-319 1644-1710(1930)
345 PF12999 PRKCSH-like: Glucosid 72.1 32 0.00069 31.8 9.1 11 195-205 89-99 (176)
346 KOG0288 WD40 repeat protein Ti 72.1 47 0.001 34.7 11.1 37 277-313 35-71 (459)
347 PF09766 FimP: Fms-interacting 72.1 18 0.00039 36.4 8.2 53 263-315 102-154 (355)
348 PF10168 Nup88: Nuclear pore c 72.0 39 0.00085 37.3 11.4 35 269-303 579-613 (717)
349 PF05600 DUF773: Protein of un 71.9 17 0.00037 38.4 8.3 49 267-315 444-492 (507)
350 PF10168 Nup88: Nuclear pore c 71.9 45 0.00097 36.9 11.8 45 272-316 561-605 (717)
351 KOG3819 Uncharacterized conser 71.9 30 0.00064 36.5 9.8 76 241-316 47-172 (513)
352 KOG0250 DNA repair protein RAD 71.9 23 0.00049 40.7 9.6 48 270-317 676-723 (1074)
353 KOG0239 Kinesin (KAR3 subfamil 71.8 42 0.00091 36.8 11.5 18 304-321 300-317 (670)
354 TIGR03185 DNA_S_dndD DNA sulfu 71.5 49 0.0011 35.6 11.9 32 272-303 212-243 (650)
355 PF10481 CENP-F_N: Cenp-F N-te 71.4 33 0.00072 34.0 9.5 31 288-318 100-130 (307)
356 KOG4797 Transcriptional regula 71.4 8.5 0.00018 33.2 4.9 27 269-295 67-93 (123)
357 PF07334 IFP_35_N: Interferon- 71.3 8.1 0.00018 31.2 4.5 26 279-304 3-28 (76)
358 PF10883 DUF2681: Protein of u 71.3 19 0.00042 29.7 6.8 48 277-329 31-82 (87)
359 PF04012 PspA_IM30: PspA/IM30 71.2 45 0.00098 30.6 10.1 55 273-327 95-149 (221)
360 PRK03947 prefoldin subunit alp 71.1 20 0.00042 30.8 7.3 28 274-301 106-133 (140)
361 PF06698 DUF1192: Protein of u 71.0 14 0.00031 28.3 5.6 24 271-294 23-46 (59)
362 COG4372 Uncharacterized protei 71.0 64 0.0014 33.6 11.8 52 259-310 127-178 (499)
363 TIGR00606 rad50 rad50. This fa 70.9 44 0.00096 39.0 12.1 48 269-316 881-928 (1311)
364 PF10359 Fmp27_WPPW: RNA pol I 70.8 22 0.00047 37.1 8.8 30 288-317 198-227 (475)
365 PRK04863 mukB cell division pr 70.6 36 0.00079 40.6 11.3 40 273-312 359-398 (1486)
366 PF05667 DUF812: Protein of un 70.6 16 0.00034 39.5 7.9 48 269-316 328-375 (594)
367 cd00632 Prefoldin_beta Prefold 70.6 23 0.00049 29.2 7.2 37 280-316 67-103 (105)
368 PF11544 Spc42p: Spindle pole 70.5 39 0.00085 27.3 8.2 41 272-312 15-55 (76)
369 PF09730 BicD: Microtubule-ass 70.5 16 0.00035 40.3 8.0 48 271-318 71-118 (717)
370 PF07058 Myosin_HC-like: Myosi 70.4 8.6 0.00019 38.5 5.4 50 278-329 2-51 (351)
371 PF15290 Syntaphilin: Golgi-lo 70.4 10 0.00022 37.6 5.8 23 258-281 79-101 (305)
372 COG4420 Predicted membrane pro 70.4 24 0.00052 33.0 8.0 33 286-318 137-169 (191)
373 PF09730 BicD: Microtubule-ass 70.3 43 0.00092 37.2 11.1 42 277-318 98-142 (717)
374 KOG3335 Predicted coiled-coil 70.1 19 0.00041 33.4 7.1 30 285-314 108-137 (181)
375 PHA02109 hypothetical protein 70.0 13 0.00028 34.7 6.1 38 266-303 190-227 (233)
376 PF07047 OPA3: Optic atrophy 3 69.8 10 0.00022 33.0 5.2 20 269-288 112-131 (134)
377 PF15619 Lebercilin: Ciliary p 69.8 91 0.002 29.0 11.7 71 245-315 71-150 (194)
378 PF01486 K-box: K-box region; 69.7 24 0.00051 28.8 7.1 34 259-292 61-98 (100)
379 KOG4010 Coiled-coil protein TP 69.7 14 0.00031 34.6 6.4 32 273-304 48-79 (208)
380 PF07047 OPA3: Optic atrophy 3 69.7 9.5 0.00021 33.2 5.0 25 272-296 108-132 (134)
381 PF04340 DUF484: Protein of un 69.6 17 0.00037 33.7 7.0 25 271-295 42-66 (225)
382 PF07851 TMPIT: TMPIT-like pro 69.6 23 0.00049 35.7 8.2 9 267-275 26-34 (330)
383 PRK09343 prefoldin subunit bet 69.5 25 0.00054 30.1 7.5 41 286-328 74-114 (121)
384 PF07246 Phlebovirus_NSM: Phle 69.3 28 0.00062 34.1 8.6 15 144-158 92-106 (264)
385 PF07246 Phlebovirus_NSM: Phle 69.3 37 0.00081 33.3 9.4 12 303-314 215-226 (264)
386 PHA03161 hypothetical protein; 69.1 31 0.00068 31.2 8.2 38 258-297 45-82 (150)
387 PF13094 CENP-Q: CENP-Q, a CEN 69.0 20 0.00044 31.5 7.1 49 269-317 41-89 (160)
388 TIGR03689 pup_AAA proteasome A 68.9 12 0.00026 39.7 6.4 40 272-318 4-43 (512)
389 PF06103 DUF948: Bacterial pro 68.9 57 0.0012 25.9 9.6 47 270-316 34-80 (90)
390 PHA03155 hypothetical protein; 68.8 6.9 0.00015 33.8 3.8 29 292-320 10-38 (115)
391 PRK10963 hypothetical protein; 68.8 14 0.00031 34.5 6.4 27 272-298 54-83 (223)
392 TIGR01730 RND_mfp RND family e 68.7 28 0.00061 32.7 8.4 30 286-315 105-134 (322)
393 PF05812 Herpes_BLRF2: Herpesv 68.7 7.8 0.00017 33.7 4.2 27 292-318 5-31 (118)
394 cd00632 Prefoldin_beta Prefold 68.6 23 0.00049 29.2 6.8 37 272-308 66-102 (105)
395 KOG0239 Kinesin (KAR3 subfamil 68.5 31 0.00068 37.8 9.6 46 271-316 243-288 (670)
396 PF06216 RTBV_P46: Rice tungro 68.4 13 0.00029 36.5 6.2 48 254-304 66-113 (389)
397 KOG0933 Structural maintenance 68.4 47 0.001 38.2 11.0 29 288-316 827-855 (1174)
398 PF09727 CortBP2: Cortactin-bi 68.4 73 0.0016 29.9 10.7 65 249-315 95-173 (192)
399 TIGR01242 26Sp45 26S proteasom 68.4 11 0.00025 37.1 5.9 48 283-330 6-54 (364)
400 PRK05431 seryl-tRNA synthetase 68.3 26 0.00056 36.1 8.6 36 281-316 71-106 (425)
401 KOG4603 TBP-1 interacting prot 68.3 31 0.00067 32.1 8.1 61 268-330 85-147 (201)
402 PF10205 KLRAQ: Predicted coil 68.3 34 0.00073 29.1 7.8 31 270-300 41-71 (102)
403 TIGR02338 gimC_beta prefoldin, 68.2 25 0.00055 29.2 7.1 29 288-316 72-100 (110)
404 PF03245 Phage_lysis: Bacterio 68.0 52 0.0011 28.3 9.2 48 268-315 13-60 (125)
405 PF15254 CCDC14: Coiled-coil d 68.0 38 0.00083 37.8 10.1 37 277-313 442-478 (861)
406 PTZ00361 26 proteosome regulat 68.0 13 0.00027 38.6 6.3 61 262-331 55-116 (438)
407 TIGR03689 pup_AAA proteasome A 68.0 11 0.00024 39.9 6.0 35 269-303 8-42 (512)
408 COG4238 Murein lipoprotein [Ce 67.9 35 0.00076 27.6 7.4 48 269-316 25-72 (78)
409 PF11382 DUF3186: Protein of u 67.9 16 0.00034 36.0 6.7 41 269-309 32-72 (308)
410 PF12329 TMF_DNA_bd: TATA elem 67.9 39 0.00084 26.7 7.7 40 275-314 32-71 (74)
411 PF10234 Cluap1: Clusterin-ass 67.8 57 0.0012 32.0 10.4 8 121-128 71-78 (267)
412 TIGR01242 26Sp45 26S proteasom 67.8 12 0.00026 36.9 6.0 38 273-310 3-40 (364)
413 COG3879 Uncharacterized protei 67.7 23 0.0005 34.4 7.6 26 271-296 59-84 (247)
414 PF08606 Prp19: Prp19/Pso4-lik 67.7 35 0.00076 27.2 7.3 30 271-300 10-39 (70)
415 PHA03011 hypothetical protein; 67.6 33 0.00072 29.4 7.6 46 270-315 65-117 (120)
416 KOG3584 cAMP response element 67.5 16 0.00035 36.4 6.6 37 274-316 302-338 (348)
417 PF03980 Nnf1: Nnf1 ; InterPr 67.5 24 0.00052 29.1 6.8 32 286-317 76-107 (109)
418 PF10482 CtIP_N: Tumour-suppre 67.4 33 0.00073 29.8 7.7 28 270-297 36-63 (120)
419 KOG3650 Predicted coiled-coil 67.4 23 0.00049 30.3 6.5 42 265-306 66-107 (120)
420 cd07666 BAR_SNX7 The Bin/Amphi 67.2 27 0.00059 33.6 8.0 53 262-317 156-208 (243)
421 PF12777 MT: Microtubule-bindi 67.2 17 0.00037 36.1 6.8 57 261-317 220-276 (344)
422 PF10779 XhlA: Haemolysin XhlA 67.2 41 0.00089 26.0 7.6 45 273-317 3-47 (71)
423 PRK10361 DNA recombination pro 67.2 69 0.0015 33.9 11.5 24 273-296 64-87 (475)
424 PF05008 V-SNARE: Vesicle tran 67.1 54 0.0012 25.2 8.3 46 269-314 32-78 (79)
425 PRK10636 putative ABC transpor 67.1 26 0.00057 37.6 8.7 24 269-292 563-586 (638)
426 KOG4370 Ral-GTPase effector RL 67.1 21 0.00045 37.4 7.5 54 271-324 408-461 (514)
427 PLN02320 seryl-tRNA synthetase 67.0 15 0.00032 38.9 6.7 18 293-310 140-157 (502)
428 PF15619 Lebercilin: Ciliary p 66.9 1E+02 0.0023 28.6 11.5 11 271-281 120-130 (194)
429 KOG4360 Uncharacterized coiled 66.8 20 0.00044 38.2 7.5 45 272-316 222-266 (596)
430 PF14389 Lzipper-MIP1: Leucine 66.8 51 0.0011 26.8 8.4 26 291-316 55-80 (88)
431 PF08581 Tup_N: Tup N-terminal 66.8 46 0.00099 26.9 8.0 52 268-319 24-79 (79)
432 PRK10361 DNA recombination pro 66.7 84 0.0018 33.3 12.0 20 271-290 69-88 (475)
433 PRK10698 phage shock protein P 66.6 1E+02 0.0022 29.0 11.6 42 276-317 99-140 (222)
434 KOG0995 Centromere-associated 66.5 45 0.00097 36.0 10.0 39 279-317 283-321 (581)
435 PRK14161 heat shock protein Gr 66.4 27 0.00058 32.1 7.4 20 271-290 35-54 (178)
436 cd00890 Prefoldin Prefoldin is 66.4 29 0.00063 28.7 7.2 32 272-303 90-121 (129)
437 PLN02678 seryl-tRNA synthetase 66.3 30 0.00064 36.2 8.6 30 300-331 81-110 (448)
438 PF10506 MCC-bdg_PDZ: PDZ doma 66.3 23 0.0005 27.8 6.0 36 273-308 2-37 (67)
439 PF14257 DUF4349: Domain of un 66.3 26 0.00057 33.1 7.7 60 269-330 132-193 (262)
440 PF07889 DUF1664: Protein of u 66.2 91 0.002 27.3 10.4 67 245-317 57-123 (126)
441 cd00890 Prefoldin Prefoldin is 66.2 22 0.00048 29.4 6.4 32 271-302 96-127 (129)
442 PRK13182 racA polar chromosome 66.1 67 0.0014 29.4 9.9 60 270-331 86-150 (175)
443 PRK06835 DNA replication prote 66.1 50 0.0011 32.9 9.9 21 296-316 64-84 (329)
444 PRK09413 IS2 repressor TnpA; R 66.1 14 0.00031 31.1 5.3 33 282-314 70-102 (121)
445 PF12711 Kinesin-relat_1: Kine 66.0 38 0.00082 27.9 7.4 38 278-317 46-83 (86)
446 PF02388 FemAB: FemAB family; 66.0 28 0.0006 35.4 8.2 23 269-291 242-264 (406)
447 KOG2129 Uncharacterized conser 66.0 8.5 0.00019 40.1 4.5 38 273-310 47-84 (552)
448 PF03670 UPF0184: Uncharacteri 66.0 25 0.00054 28.9 6.3 41 269-309 33-73 (83)
449 PF06818 Fez1: Fez1; InterPro 66.0 14 0.00029 34.9 5.5 53 265-317 76-151 (202)
450 KOG0946 ER-Golgi vesicle-tethe 65.9 19 0.00041 40.3 7.3 48 269-316 650-697 (970)
451 COG1729 Uncharacterized protei 65.8 16 0.00035 35.6 6.2 49 270-319 57-105 (262)
452 KOG2185 Predicted RNA-processi 65.8 24 0.00052 36.7 7.6 55 269-323 413-477 (486)
453 PF00261 Tropomyosin: Tropomyo 65.8 1.1E+02 0.0024 28.8 11.7 43 272-314 172-214 (237)
454 PF06098 Radial_spoke_3: Radia 65.6 1.3E+02 0.0028 29.9 12.4 32 242-273 150-181 (291)
455 PF10481 CENP-F_N: Cenp-F N-te 65.5 46 0.001 33.0 9.2 36 265-300 49-84 (307)
456 PF04201 TPD52: Tumour protein 65.2 21 0.00046 32.6 6.4 25 279-303 39-63 (162)
457 PF03961 DUF342: Protein of un 65.2 35 0.00075 35.1 8.9 32 285-316 377-408 (451)
458 COG4985 ABC-type phosphate tra 65.2 13 0.00028 36.2 5.2 28 288-315 219-246 (289)
459 KOG0978 E3 ubiquitin ligase in 65.1 44 0.00096 36.9 9.9 62 260-321 564-625 (698)
460 KOG3433 Protein involved in me 65.1 69 0.0015 30.1 9.8 42 259-300 106-147 (203)
461 PF04999 FtsL: Cell division p 65.0 22 0.00048 28.6 6.0 32 279-310 38-69 (97)
462 KOG0976 Rho/Rac1-interacting s 65.0 69 0.0015 36.4 11.2 25 243-267 100-124 (1265)
463 KOG4643 Uncharacterized coiled 64.9 49 0.0011 38.1 10.3 68 249-316 374-441 (1195)
464 PF15397 DUF4618: Domain of un 64.8 77 0.0017 31.0 10.6 66 250-315 62-138 (258)
465 PF03961 DUF342: Protein of un 64.8 41 0.00089 34.5 9.3 61 257-317 329-402 (451)
466 KOG1853 LIS1-interacting prote 64.5 55 0.0012 32.3 9.4 83 244-330 108-190 (333)
467 KOG0996 Structural maintenance 64.5 59 0.0013 38.0 10.9 74 244-317 517-590 (1293)
468 PF12777 MT: Microtubule-bindi 64.3 37 0.0008 33.7 8.6 72 247-318 220-291 (344)
469 PF05622 HOOK: HOOK protein; 64.3 2.2 4.8E-05 46.3 0.0 77 241-317 296-376 (713)
470 PRK14148 heat shock protein Gr 64.2 21 0.00045 33.4 6.4 49 267-315 31-79 (195)
471 PF15070 GOLGA2L5: Putative go 64.2 44 0.00095 36.3 9.7 60 258-317 4-63 (617)
472 KOG4674 Uncharacterized conser 64.2 59 0.0013 39.6 11.3 73 244-316 811-884 (1822)
473 COG1340 Uncharacterized archae 64.1 1.2E+02 0.0025 30.3 11.8 77 239-316 5-81 (294)
474 PRK09413 IS2 repressor TnpA; R 64.0 16 0.00035 30.8 5.2 36 271-306 73-108 (121)
475 PF04899 MbeD_MobD: MbeD/MobD 64.0 50 0.0011 26.1 7.5 54 272-327 17-70 (70)
476 PF08961 DUF1875: Domain of un 64.0 2.3 4.9E-05 40.7 0.0 54 272-325 118-171 (243)
477 TIGR01069 mutS2 MutS2 family p 63.8 80 0.0017 35.2 11.8 72 244-315 518-590 (771)
478 KOG3433 Protein involved in me 63.8 81 0.0018 29.7 10.0 73 237-311 72-144 (203)
479 KOG0993 Rab5 GTPase effector R 63.7 44 0.00096 35.0 9.0 72 239-317 111-182 (542)
480 KOG0804 Cytoplasmic Zn-finger 63.7 89 0.0019 33.0 11.3 75 242-316 368-447 (493)
481 cd07429 Cby_like Chibby, a nuc 63.6 16 0.00034 31.3 5.0 37 269-305 72-108 (108)
482 TIGR00414 serS seryl-tRNA synt 63.4 43 0.00093 34.4 9.1 74 248-321 37-114 (418)
483 KOG0976 Rho/Rac1-interacting s 63.4 83 0.0018 35.8 11.4 83 244-328 322-408 (1265)
484 PRK14143 heat shock protein Gr 63.2 20 0.00043 34.5 6.2 44 272-315 63-106 (238)
485 PF06428 Sec2p: GDP/GTP exchan 63.1 32 0.00068 28.9 6.7 80 248-329 1-81 (100)
486 PRK14156 heat shock protein Gr 63.0 20 0.00043 33.0 5.9 58 274-331 32-89 (177)
487 PF14915 CCDC144C: CCDC144C pr 62.8 56 0.0012 32.7 9.3 60 258-317 182-241 (305)
488 PF07412 Geminin: Geminin; In 62.8 39 0.00084 31.9 7.9 76 265-340 114-194 (200)
489 KOG0612 Rho-associated, coiled 62.8 79 0.0017 37.1 11.6 89 241-331 466-554 (1317)
490 KOG2685 Cystoskeletal protein 62.7 1.2E+02 0.0025 31.8 11.8 81 242-324 45-125 (421)
491 KOG0837 Transcriptional activa 62.6 37 0.0008 33.4 7.9 60 255-317 202-261 (279)
492 PF09429 Wbp11: WW domain bind 62.4 56 0.0012 26.0 7.7 59 244-303 13-77 (78)
493 PF02994 Transposase_22: L1 tr 62.4 16 0.00035 36.9 5.7 66 263-328 131-196 (370)
494 PF10174 Cast: RIM-binding pro 62.4 73 0.0016 35.7 11.1 73 245-317 276-349 (775)
495 PF00261 Tropomyosin: Tropomyo 62.4 1.2E+02 0.0027 28.4 11.3 69 249-317 156-224 (237)
496 PRK01156 chromosome segregatio 62.3 95 0.0021 34.4 12.1 81 244-326 625-715 (895)
497 PF02996 Prefoldin: Prefoldin 62.2 25 0.00054 28.9 6.0 42 271-312 79-120 (120)
498 PF10458 Val_tRNA-synt_C: Valy 62.1 51 0.0011 25.1 7.2 44 273-316 1-65 (66)
499 KOG2185 Predicted RNA-processi 62.0 37 0.0008 35.5 8.1 67 244-310 419-485 (486)
500 TIGR03495 phage_LysB phage lys 62.0 94 0.002 27.5 9.7 74 256-331 20-93 (135)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=3e-63 Score=448.18 Aligned_cols=166 Identities=59% Similarity=1.033 Sum_probs=153.8
Q ss_pred CCCCCCCCccCCCCCCCCC-CCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCCCCC
Q 019499 1 MGTGEENTSAKTAKTASST-QEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVP 78 (340)
Q Consensus 1 mg~~e~~~~~k~~k~~s~~-~~~~~~~~~pdW~~smQaYy~~~~~pp~~~~s~vas-~~phPYmWg~q~~~~ppygtp~P 78 (340)
||++|++|++|.+|+++++ ++|+++++||||+ +|||||++| ++|+||+++||+ |+|||||||+||+||||||||||
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs-~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~p 78 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWS-AMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVP 78 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccH-hhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCC
Confidence 9999999999999988764 5799999999999 599999999 889999999995 99999999999999999999999
Q ss_pred CccccCCCCcCCCCCCCC--------------CCCCCCCCCCC-CCCCCcccccccccccCCCCC-C----CCCCccccc
Q 019499 79 YQAIYPPGGVYAHPSMAT--------------TPTAAPTNTEP-EGKGPEAKDRASAKKSKGTPG-G----KAGEIVKAT 138 (340)
Q Consensus 79 Y~a~y~~Gg~yaHP~mp~--------------~~~~~~~~~e~-~~k~~~~k~~~~~kk~Kg~~G-~----k~~~~gk~~ 138 (340)
|+||||||||||||+||+ ++..+++++|+ ++|++++|||+++|||||+|| + ||++++|++
T Consensus 79 Y~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~ 158 (189)
T PF07777_consen 79 YPAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTS 158 (189)
T ss_pred CccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCccc
Confidence 999999999999999996 22357889999 599999999999999999994 3 889999999
Q ss_pred cCCCCCCCcccccCCCCCCCCcCcCCCccc
Q 019499 139 SGSGNDGVSQSAESGSDGSSDASDENGNQQ 168 (340)
Q Consensus 139 ~gs~~~~~s~S~esgs~gSsdgsd~ns~~~ 168 (340)
++++|++.|||+||++||||||||+|++++
T Consensus 159 ~~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~ 188 (189)
T PF07777_consen 159 GSSANDGSSQSSESGSEGSSDGSDGNTNND 188 (189)
T ss_pred cCCCCCccCccccccccccccCcCccccCC
Confidence 999999999999999999999999999864
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.51 E-value=8.8e-14 Score=105.71 Aligned_cols=64 Identities=50% Similarity=0.738 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 307 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 307 (340)
|++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|+.++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999999873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.45 E-value=4.2e-13 Score=102.15 Aligned_cols=62 Identities=53% Similarity=0.748 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN 307 (340)
Q Consensus 246 e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~ 307 (340)
+.|+.+|+++||+||++||.||++++.+|+.+|..|+.+|..|+.++..|+.++..|+.++.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999998888888877763
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.34 E-value=2.4e-12 Score=123.57 Aligned_cols=63 Identities=35% Similarity=0.399 Sum_probs=57.8
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 238 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 238 ~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
..-+.||.-+||+-|+++|||+||+||+|||+|+.+||.||..|+..|..|-+||+.|++-+-
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999999999999999999999999999999977653
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.27 E-value=2.3e-11 Score=114.30 Aligned_cols=80 Identities=35% Similarity=0.463 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 246 e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
|+|-+|||++||.+|+-+|.|||+++++||.++..|..||+.|+.+.+.|+..++.|..+|.+|..+|+.+. +.|.+|
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~~ 144 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHhh
Confidence 446899999999999999999999999999999999999999999999999999999999999999999887 555555
Q ss_pred hh
Q 019499 326 EQ 327 (340)
Q Consensus 326 ~~ 327 (340)
.+
T Consensus 145 ~~ 146 (292)
T KOG4005|consen 145 KQ 146 (292)
T ss_pred HH
Confidence 54
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.20 E-value=5.4e-11 Score=121.78 Aligned_cols=71 Identities=39% Similarity=0.468 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 241 ~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
..|.+-.||+.|+++|||||..||+|||+|++.||.++..|..||+.|+.|...|++++..|..||..|+-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999998873
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.19 E-value=2.9e-11 Score=122.22 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-+|+.+||.|||+||++||+.||+|||+|++.||.||....+||++|++++..|+.++..|..+.+.|...+.+..
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 4889999999999999999999999999999999999999999999999998887777777777777766655543
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.17 E-value=1.7e-10 Score=85.23 Aligned_cols=50 Identities=50% Similarity=0.747 Sum_probs=46.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
++.+|+ +||+||++||.||++++++|+.+|..|+.+|..|+.+|..|+.|
T Consensus 5 ~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467777 99999999999999999999999999999999999999888754
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.72 E-value=5.6e-08 Score=92.64 Aligned_cols=69 Identities=30% Similarity=0.482 Sum_probs=60.4
Q ss_pred CCchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 236 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 236 ~~~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
.++.+++++..+|-+|.+++||++|.+||.||.++|.+||++|..|..+|..|-.++..|++...+++.
T Consensus 194 ispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 194 ISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred CCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 355667788888888889999999999999999999999999999999999999999888776665554
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.48 E-value=1.9e-09 Score=87.70 Aligned_cols=67 Identities=33% Similarity=0.484 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
+..++|..||+.+||.+|++||.||.+++++|+.++..|..+...|..++..|+.++..|+..+..|
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477899999999999999999999999999999999888888888777777766666655555444
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.35 E-value=2.5e-06 Score=82.66 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
..|.+++|+.||-|+|.||+++.|.|+.+++.|+.+|.+|+.++..|.+|+..|+.-
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467778889999999999999999999999999999999998887777776643
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=98.16 E-value=7.3e-06 Score=78.75 Aligned_cols=59 Identities=29% Similarity=0.476 Sum_probs=50.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
+...|+.+|-+|+||||.++|...+++..||..|+.||+.|+.+|..|+.++..|+.-.
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778999999999999999999999999999999999999977766666655443
No 13
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.99 E-value=3.3e-05 Score=71.10 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=80.2
Q ss_pred chhhhhhhhcCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCcCCCCCCCC--CC--CC-----
Q 019499 30 DWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMAT--TP--TA----- 100 (340)
Q Consensus 30 dW~~smQaYy~~~~~pp~~~~s~vas~~phPYmWg~q~~~~ppygtp~PY~a~y~~Gg~yaHP~mp~--~~--~~----- 100 (340)
|=. ....|.- -...=.||.+. ++||||-....+ =.+||||+ ||. +||+||+ +| .+
T Consensus 22 ~~~-~~~~ypD-Ws~mQAYyg~~----~~p~~f~s~va~----sp~phPYM----WG~--~q~mmPPYGtP~pY~A~Yph 85 (189)
T PF07777_consen 22 DQP-TPHVYPD-WSAMQAYYGPG----APPPYFNSAVAS----SPQPHPYM----WGP--QQPMMPPYGTPVPYPAMYPH 85 (189)
T ss_pred CCC-CCccCCc-cHhhhhccCCC----CCCcccCcccCC----CCCCCCcc----cCC--CccccCCCCCCCCCccccCC
Confidence 444 3666643 22344688873 778998877654 13589999 999 8999986 22 11
Q ss_pred --------CC-----------CCCCCCCCCCcccccccccccCCCCCCCCCCccccccCCCCC--CCcccccCCCCCCCC
Q 019499 101 --------AP-----------TNTEPEGKGPEAKDRASAKKSKGTPGGKAGEIVKATSGSGND--GVSQSAESGSDGSSD 159 (340)
Q Consensus 101 --------~~-----------~~~e~~~k~~~~k~~~~~kk~Kg~~G~k~~~~gk~~~gs~~~--~~s~S~esgs~gSsd 159 (340)
.+ .++++.+....+.|-.+ .|.+++ |+....|+++|...+ ..-+.+++++..+..
T Consensus 86 GgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p---~Kss~~-kd~~~~KksKg~~g~~a~s~~n~~~gk~~~~s 161 (189)
T PF07777_consen 86 GGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDP---GKSSGN-KDKGSMKKSKGFDGGLAMSIKNGESGKTSGSS 161 (189)
T ss_pred CccccCCCCCcccccCCCcccccccccCCCCccccccc---ccCcCc-cccccccccccccccceeeccCCccCccccCC
Confidence 11 11122222222222111 133333 555566777776632 234567888887778
Q ss_pred cCcCCCccchhhhccccCCCCCCC
Q 019499 160 ASDENGNQQEFARANTENNTAEAV 183 (340)
Q Consensus 160 gsd~ns~~~~s~~~~~~~~~~~~~ 183 (340)
++|+.+|..+|+++.+++++++++
T Consensus 162 ~n~~~Sqs~eSgsegSSdgSD~Nt 185 (189)
T PF07777_consen 162 ANDGSSQSSESGSEGSSDGSDGNT 185 (189)
T ss_pred CCCccCccccccccccccCcCccc
Confidence 899999988888877778777654
No 14
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.68 E-value=0.00037 Score=60.79 Aligned_cols=68 Identities=26% Similarity=0.425 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
-.+|..||-++||=-|+-||-|+-+.-++| +.++..|..+|+.|++++..+..|...|+.+++.|..-
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eL-------E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHEL-------EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888899999999999999998766655 55677777788888888888888999999999888743
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.64 E-value=9.4e-05 Score=77.96 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=59.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCc
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED-LSRLCGP 319 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e-L~~L~g~ 319 (340)
+|-.||+=+||.||++||+||..-|..||.+|+.|+.|-+.|.+|-..+...+..++.+...|-.+ +..|+.+
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~ 562 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDE 562 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455678889999999999999999999999999999999998888888877777777777777543 3444433
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.85 E-value=0.0053 Score=51.89 Aligned_cols=50 Identities=30% Similarity=0.436 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+.+.+|+.++..|..+...|+.++..|-+|+..|+.||..|+++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999864
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.82 E-value=0.016 Score=54.14 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.++.+++++..+..|+.+|++|++++..++.+++.|+.+|..|+..+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777777777777776543
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.65 E-value=0.0092 Score=50.81 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+.+|++++..|..+...|+..+..|-+|+..|+.||..||++|.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999873
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.57 E-value=0.016 Score=45.13 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
+.++.|=..++.|+.||..|+.++..+..+...|...|..-+.+|+.+- ..+..|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI--~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMI--TRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhcc
Confidence 4567777777888888888888888888888888888888888888876 66666655
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.52 E-value=0.017 Score=45.66 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
++.||.+|..+-..+..|+.++..|+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444444333333333333333
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.51 E-value=0.0095 Score=53.82 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 330 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~ 330 (340)
....|+.||..|+.++..|+++++.|+.||..|..++..+. ++-..|..+|+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~--eDY~~L~~Im~ 149 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE--EDYQTLIDIMD 149 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 46667778888888888888888888888888888887776 66666666554
No 22
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=96.48 E-value=0.016 Score=46.77 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
-++|..++..|+.....|..+++..+++|++|+.||.-|..-|..|...
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788889999999999999999999999999999999999998643
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.021 Score=45.25 Aligned_cols=57 Identities=28% Similarity=0.348 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
-|.-|+-+|+.|+.+|..|..++..++...+.|+.||..|+.+-...+ +.|+.|.-.
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ--erlrsLLGk 75 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ--ERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 345567788888888888888888888888888888888877766555 555555433
No 24
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=96.12 E-value=0.056 Score=51.88 Aligned_cols=59 Identities=25% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.++.+|+++-+.|..||..|+.....|-.+.++|..+...|+++|..+......-++-.
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ 155 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVI 155 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHH
Confidence 45789999999999999999999999999999999999999999999876655555433
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.00 E-value=0.04 Score=44.45 Aligned_cols=59 Identities=29% Similarity=0.335 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
+.|.-|+-+|+.|+.+|..|..++..++.....|..||..|+.+....+ ++|+.|.-.+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LLGkm 76 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh
Confidence 3455677778888888888888877766666667777777777666665 5565554433
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.97 E-value=0.052 Score=42.93 Aligned_cols=47 Identities=36% Similarity=0.464 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+.-|+.+++.|+.+|..|..+...|+.++++|+.|-..+..+|..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555444
No 27
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=95.82 E-value=0.00036 Score=70.39 Aligned_cols=67 Identities=31% Similarity=0.378 Sum_probs=58.6
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 240 WIQDERELKRQKRKQSNRESARR---SRLRKQAECEELQARVETLS-NENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 240 ~~~DE~e~KR~rRk~~NRESARR---SR~RKq~~leeLE~rv~~Le-~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
.+..+.+.|+.+|+++|+.+|.+ ||.|++....+|+.+|+.|+ .++..|..+|..|+++.+.|+.+.
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l 216 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKEL 216 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHH
Confidence 34577778899999999999999 99999999999999999999 999998888888877777776554
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.57 E-value=0.18 Score=47.21 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
-+++..+|+++++.++.+..+|..+...|+++++.++.|+..|+.++..+.....
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888899999999999999999999999999999999988875443
No 29
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.57 E-value=0.035 Score=40.17 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+.+...|+...+.|+.+++.|..||..|++++..|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666666666666554
No 30
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=95.49 E-value=0.31 Score=39.86 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-+.-++|..+++.+=|++=..|.-+.....+|+.+++.|..+...|-++|.....++..|+.-|..+..+|....
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888888888889999999999999999999999999999999999999999998765
No 31
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.49 E-value=0.066 Score=55.66 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+++||++++.|+.|.+.|..+...++++++.|+.||++|+.+++.+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999999999999996543
No 32
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.37 E-value=0.21 Score=45.56 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
+.+.....+..-+........++.+++.-++.|..|...|.-++..|.+++..|+.||..|-+++.+..+.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555556667778888888888999999999999999999999999999999888776543
No 33
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=95.34 E-value=0.088 Score=40.93 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+++++||.++.-++.-..+|...|....+++..|+.+...|..+|..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999999999999999863
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=95.32 E-value=0.09 Score=41.01 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+..|+.+|+.|-..+..|+.+...|+.+...+..|+..|.+++..-.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999887654
No 35
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.1 Score=41.45 Aligned_cols=53 Identities=36% Similarity=0.453 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
=|-++++|.++-..|..|.+.++...+.|..++++|+.|...+.++|+.|-|.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46689999999999999999999999999999999999999999999988763
No 36
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.21 E-value=0.08 Score=45.14 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
..+..|+.++-.|-++...|++.+..|-+|+..|+.||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999988
No 37
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.06 E-value=0.13 Score=49.14 Aligned_cols=54 Identities=31% Similarity=0.403 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+--+..++++..+-+.|..+|.+|..+++.+++++..|+.||.+|.+.+..+.|
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 333445666666666777777777777777778888888888888888887764
No 38
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.85 E-value=0.12 Score=37.42 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+||...+.|+.....|+.+.+.|.++.+.|+.|...|+.+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888888888888888888999999999888764
No 39
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.78 E-value=0.34 Score=47.20 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=52.0
Q ss_pred HHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 019499 252 RKQSNRESARRSRLRKQAE-------CEELQARVETLSNENRNLRDELQRLSEE-----------CEKLTSENNSIKEDL 313 (340)
Q Consensus 252 Rk~~NRESARRSR~RKq~~-------leeLE~rv~~Le~EN~~Lr~el~~L~~e-----------~~~L~~EN~~Lk~eL 313 (340)
+-+.-|+--+.+..--.++ +.+|+.+...|+.+|+.|+-++..++++ ...|+.+|..+++.+
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik 107 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK 107 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344454444444444444 4455555555566666666666666553 346888899999999
Q ss_pred HHhcCchhhhhhhhcCCC
Q 019499 314 SRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 314 ~~L~g~~~~~~L~~~~~~ 331 (340)
.+|+ ..|+.|+|.||+
T Consensus 108 eql~--kyiReLEQaNDd 123 (333)
T KOG1853|consen 108 EQLR--KYIRELEQANDD 123 (333)
T ss_pred HHHH--HHHHHHHHhccH
Confidence 9998 899999999987
No 40
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.68 E-value=0.64 Score=41.23 Aligned_cols=69 Identities=30% Similarity=0.315 Sum_probs=56.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.....+.|++.+-+--.-+++.|+.|+.++..+..+...|..++..|+.+...|..+....+.++..|.
T Consensus 32 eLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 32 ELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788888888888888888999988888888888888888888888888888888887777775
No 41
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.68 E-value=0.51 Score=41.19 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+..|-...|+.......++...++.|+..++.|+.++..+..++..++.....|..++..+...+....
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666677777777777777777776666666666666665555555555555444443
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.64 E-value=0.18 Score=40.75 Aligned_cols=51 Identities=33% Similarity=0.462 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
|-++++|+.+-..|..++..++..-..|.+++++|+.|...+.++|..|-|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888888888777765
No 43
>PRK04325 hypothetical protein; Provisional
Probab=94.59 E-value=0.25 Score=39.11 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++++||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999999999998875
No 44
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.58 E-value=0.25 Score=38.97 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++.+||.++.-++.-..+|-+.|...++++..|+.+.+.|..+|..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788889999988888889999999999999999999888888888875
No 45
>PRK00295 hypothetical protein; Provisional
Probab=94.57 E-value=0.26 Score=38.39 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++.+||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999998875
No 46
>PRK02119 hypothetical protein; Provisional
Probab=94.54 E-value=0.26 Score=38.99 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+++.+||.++.-++.-..+|-..|...++++..|+.+.+.|..+|..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678888888888888888888888888888888888888888888765
No 47
>PRK00736 hypothetical protein; Provisional
Probab=94.52 E-value=0.27 Score=38.36 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++++||.++..++.-..+|-..|....+++..|+.+...|..+|..+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999998875
No 48
>PRK04406 hypothetical protein; Provisional
Probab=94.36 E-value=0.31 Score=38.81 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++.+||.++..++.-+.+|-..|...++++..|+.+.+.|..+|..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888888888888888888888888888888888888777765
No 49
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=94.13 E-value=0.33 Score=45.92 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+.++++++.+.+++.++.++..|+++.+.+..|+..|..|++.|++++..
T Consensus 161 ~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 161 EKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344455566666666777777778888888888888888888888888764
No 50
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.11 E-value=0.43 Score=41.97 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+|..+...|.++++.|+.||.+++.++-.+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777888888888877777765
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.10 E-value=0.25 Score=41.88 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
+|=.++..|+.....|..++..|+..+..|..||.+|+.+...|+ +.|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 456778888888888999999999999999999999998888888 66666655
No 52
>PRK11637 AmiB activator; Provisional
Probab=94.09 E-value=0.65 Score=47.13 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++....-+.+++.|+.++..++.+...+..+|..++.++..|..+...|+.+|..+.
T Consensus 67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666666666666666666666666666666666666655543
No 53
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.06 E-value=0.08 Score=48.15 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+++|.++.+--++|.-|..|| .|.+.|+.++++||.||.+|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777776666 334445555555555555444
No 54
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=94.05 E-value=0.11 Score=50.38 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 019499 277 RVETLSNENRNLRDELQRLSEECE----KLTSENNSIKEDLSRL 316 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~----~L~~EN~~Lk~eL~~L 316 (340)
.+..|.+||.+|++|+..|+.+.+ .|+.||++||+.|.--
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344467777777777766644433 4899999999877654
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.97 E-value=0.61 Score=49.50 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++......+....-+.+++.|+..+...+.++..|..+...|....+.|..|+..|+.++.++
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555555555555555555555555554444444444444444433
No 56
>PRK11637 AmiB activator; Provisional
Probab=93.71 E-value=0.85 Score=46.26 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.+..++.++..++.+...+..+|..|+.++..++.+...++..
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333
No 57
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.65 E-value=0.47 Score=41.41 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..++.|+.+++.++.++..+..+...|+.++..+...+..+++++..+
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444444444444444444444444444
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.62 E-value=0.92 Score=42.58 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
...+.++++++.++..|+.+...++.++..+++++..++.++...+..|.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556555555555555555555555555555555444
No 59
>PRK00846 hypothetical protein; Provisional
Probab=93.59 E-value=0.48 Score=38.11 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+++++||.++.-.+.-..+|-..|...+..+..|+.+.+.|..+|+.+.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36678888888888888888888888888888888888888888888776
No 60
>PRK04406 hypothetical protein; Provisional
Probab=93.34 E-value=0.78 Score=36.50 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
++.|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.+..+...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~ 61 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 45799999999999999999999999999999999999999999996 667766643
No 61
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.02 E-value=0.017 Score=58.41 Aligned_cols=56 Identities=32% Similarity=0.399 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
+.|=..+||.||-|||.|||.++..|+.+.+.+..+|..|. ..+++.|..++..+.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~------~~~~~~l~~~~~~~~ 341 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL------LNEVELLRNEVKQLS 341 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc------cchhhHHHhHHhhhc
Confidence 35558999999999999999999999999999999999888 233345555555543
No 62
>PRK02119 hypothetical protein; Provisional
Probab=93.00 E-value=0.91 Score=35.87 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
++..|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.+..+...
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccc
Confidence 578899999999999999999999999999999999999999999997 667776644
No 63
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.00 E-value=0.43 Score=46.12 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.++|++...+-+++..+.-+....+++.++..|.+|++.|+.++.+|+.+|..|
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444433333333334444444444444444444444444444444
No 64
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.35 Score=51.74 Aligned_cols=46 Identities=35% Similarity=0.526 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.++..|+.+|+.|+.||..|+.++..|+.+++.|+.+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777776654
No 65
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.92 E-value=0.67 Score=44.13 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 019499 278 VETLSNENRNLRDELQRLSEECE---KLTSENNSIKEDLSRL 316 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~---~L~~EN~~Lk~eL~~L 316 (340)
...|.+||.+|++|+..|+.+.. .|+.||.+|++.|.-.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34455555555555555555444 7789999999877643
No 66
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.86 E-value=0.51 Score=45.28 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+|..+++.+..||.+|+.++..|+.+++.++.+..+|..+..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444443333333333333333333333
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.80 E-value=1.8 Score=40.91 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
-+..-+++++.|+.+++.|+..|..|...+..+++++..|..+...+...-..|
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666667777777777777666666666666666666655444443
No 68
>smart00338 BRLZ basic region leucin zipper.
Probab=92.79 E-value=1 Score=34.08 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
...+..|+.+...|..++..|+.++..|+.|+..|+.++.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777777777777777777776653
No 69
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.64 E-value=0.65 Score=42.68 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 297 EECEKLTSENNSIKEDLS 314 (340)
Q Consensus 297 ~e~~~L~~EN~~Lk~eL~ 314 (340)
++++.|+.++..|+.+|.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 70
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=92.61 E-value=0.41 Score=37.57 Aligned_cols=44 Identities=27% Similarity=0.472 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
.....+..++..++.+++.|+.||..|+.++..|..++.+..+-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~A 67 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 34445666666666666777777777777777776666665443
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.59 E-value=0.93 Score=49.49 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.|.+.+|+.+|+.|...|+.++...++++..|+.|...|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888888888888888888888887777666654
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=1.1 Score=49.44 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.7
Q ss_pred hhhhcCCCCCCC
Q 019499 35 MQAFYGAGATPP 46 (340)
Q Consensus 35 mQaYy~~~~~pp 46 (340)
+|.|-=|-+.||
T Consensus 82 LqG~~lP~~LPP 93 (1118)
T KOG1029|consen 82 LQGIQLPPVLPP 93 (1118)
T ss_pred hcCCcCCCCCCh
Confidence 355544444444
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=92.58 E-value=0.33 Score=37.17 Aligned_cols=25 Identities=44% Similarity=0.741 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+.+|+.+++.|+.+|..|..+++.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444333
No 74
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.40 E-value=0.56 Score=45.06 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
||.|+..+..++..|+.|++.|+..|-.|=++++=|+.
T Consensus 98 LE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 98 LEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555555555667778888888888777653
No 75
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.31 E-value=0.68 Score=39.54 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
+|=.++..|+.....|..++..|+..+..|..||..|+.+-..|+ ..|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 445566667777777777777777777777777777777766666 555554
No 76
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.30 E-value=0.46 Score=42.26 Aligned_cols=52 Identities=33% Similarity=0.431 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 267 KQAECEELQARVETLSNENRNLRDEL--QRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el--~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
-++++.+|+.++..|+.|...|...+ ..|..++..|+.|+..|..+|..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777766666655 56677788888888888888888775
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.27 E-value=2 Score=41.27 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
.+.+++.=.-++.++++|+.+|..++.+...++.++
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.14 E-value=0.52 Score=41.96 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.+|+.++..|+.++..|+.++..|.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 79
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=92.07 E-value=0.77 Score=49.17 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
..++.+||.+.+.|..|.+++..+++.|++.+...+.|..+|+.+|++-+ ..++.|.+.+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq--~~~~El~~~n 151 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ--RQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH--HHHHHHHhhc
Confidence 45788888888889999999999999999988888888888888887765 4555555443
No 80
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=92.04 E-value=0.68 Score=39.25 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
-.+|-.|+.-...|.++++.+++|+.+|+.||+-|-.-|+.|...
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 445555666667778888889999999999999999998888643
No 81
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.93 E-value=0.65 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
.+.++++++++++++.|+.+|..|+.++..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3455566777777777777777777777777653
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.91 E-value=3.1 Score=37.25 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+..+.+.+++++.++..++.+..+...|++++..++.+++.++.+...+++....+.
T Consensus 122 ~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 122 RELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLE 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554444444555555555555544444443
No 83
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.86 E-value=1.2 Score=34.98 Aligned_cols=47 Identities=32% Similarity=0.459 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDE-------LQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~e-------l~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++.|.+++...+.+|..|+.+ +..+-.++.+|+.||..|+.+|..+
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555554444 4555555555566666665555443
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.85 E-value=0.58 Score=48.82 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|+.+..+|.++.+.|+++.++|......|..+|..
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555556666666666666666666555543
No 85
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.85 E-value=1.5 Score=34.47 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
.+|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.+..+....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccc
Confidence 4589999999999999999999999999999999999999999997 6777776544
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.82 E-value=3 Score=38.72 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
.-+++....++.+++-+.-+.+-..-+..+..++.++..|+.+++.|..++..|..+...|.
T Consensus 66 ~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 66 KAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777766666777777777777788877777777777777766665
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=1.4 Score=48.73 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 019499 301 KLTSENNSIKEDLSRL 316 (340)
Q Consensus 301 ~L~~EN~~Lk~eL~~L 316 (340)
.|..|...|..++.+|
T Consensus 441 ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344443333
No 88
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.76 E-value=2.2 Score=32.14 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
..++.|+.+...|..++..|+.++..|..++..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555555555555555555443
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.76 E-value=2.9 Score=39.49 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++..+|..+++.|+.|.+.|+..++.|+..+..++.+...|..++..+.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666666666666654
No 90
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.74 E-value=0.24 Score=45.59 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.|.+|+++++ -+.++.++.+|+.+++.|+.+.++|+..+..|-
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666665 455666777777777777775555555554443
No 91
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.64 E-value=1.1 Score=34.70 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
.|+.|+..|+....-+..-|+.|.+.+.....+...|+.+|..|. +.|+.+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 478899999999999999999999999999999999999999988 7777766
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.61 E-value=0.95 Score=39.92 Aligned_cols=42 Identities=33% Similarity=0.548 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+.|+.++..|+.++..+-.+|..|+..+..|..+...|..+|
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333333333
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.59 E-value=1.4 Score=42.26 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+|..+++.|+.|+.+||-+|+.+..++++|....+.|-.+|..+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777766666554
No 94
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.57 E-value=1.6 Score=45.21 Aligned_cols=49 Identities=35% Similarity=0.422 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-+++-|+.++..|+.||.+||..+..|+..|++|..+..++..+|..+.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3456667788888888888888888888888888888777777776654
No 95
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=91.53 E-value=0.81 Score=37.57 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 019499 280 TLSNENRNLRDELQRLSEE------CEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e------~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|..+|..|+.+|..|+.+ ......||.+|++++..|+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666643 3456677777777777664
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.49 E-value=1.6 Score=45.05 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
++++-.+++=+.-.+.....++....|+.++..|+.++..|..+|......+..++..+..+...|..|.+.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4455555555566666677778888999999999999999999998888888888888888888888887655
No 97
>PRK00846 hypothetical protein; Provisional
Probab=91.38 E-value=1.4 Score=35.56 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
+.|+.|+..|+....-...-|+.|.+.+.....+...|+.+|..|. +.|..++..+.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~ 66 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFA 66 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCC
Confidence 6789999999999999999999999999999999999999999998 788888766544
No 98
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=91.22 E-value=0.8 Score=48.53 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
++--..|..+|..|..||+.|+.||..||.+|..|..+
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 34456688888888888999999999999998888653
No 99
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.11 E-value=1.7 Score=34.32 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
-|.+.|..|..+-+.|......+...|..|+.++..+..+...|+.++..+. ..+..|.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e--~~~~~l~ 67 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE--KELESLE 67 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3566777777777777777777777777777777777777777777776665 3444443
No 100
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.09 E-value=2.5 Score=39.16 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
.+.++.+..+-+..+.+.+.+...|+.++..-+.++..|..++
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i 133 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEI 133 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444445555555555556665656555554433333333333
No 101
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=90.97 E-value=0.67 Score=43.44 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.0
Q ss_pred HHHHHHHHHhcC
Q 019499 307 NSIKEDLSRLCG 318 (340)
Q Consensus 307 ~~Lk~eL~~L~g 318 (340)
..|.+-|..|.+
T Consensus 159 ~~la~~ie~l~~ 170 (200)
T PF07412_consen 159 QYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHhc
Confidence 344444445543
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.89 E-value=1.8 Score=47.38 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
||.|++ +||.++..|+.|.....+++..|+.++
T Consensus 543 ~r~r~~----~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRR----QLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555553 344444444444444444444444433
No 103
>PF15294 Leu_zip: Leucine zipper
Probab=90.80 E-value=0.72 Score=45.18 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
|..++..|+.||..|+.++..++.+|.....|...|..+|..++-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999874
No 104
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.67 E-value=3.3 Score=44.13 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..+...+.+++.|+.++..|......|..+...|..++..++.+|..|
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 105
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.52 E-value=3.7 Score=38.55 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
.+++.+++.|+.+++.++.++..++.++..+++.+
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333
No 106
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.50 E-value=2.2 Score=34.07 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
++|.+||.++..-+.-..+|...|...+..++++..+.+.|-.++.+++.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788888888888888888888888888888888888888888888763
No 107
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.49 E-value=3 Score=37.93 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
.++.+|+.+++.|+.||..|..++..++++++.|.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 108
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.40 E-value=1.1 Score=43.11 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
++..|||+++..+..++..|+.|++.|+..+.+|-...+-|..
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888888889999999999999999998888888776654
No 109
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.35 E-value=2.3 Score=48.31 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 259 SARRSRLRKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv-~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+++..+....+..++.+. ..|..+..++..+++.|+.+++.|+.++.+|++++..+.
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555 445555555666666666666666666666666665553
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.32 E-value=3.1 Score=41.00 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+++.|..++..+..++..++.++..|+.+++.|..+...+.+++.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444444444444444444443333
No 111
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.26 E-value=1.5 Score=37.34 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
.+.-.|..+-||..=..+-++|+..+..|+.++..+.+++..|+.++..++..
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544445555555555555555555555555555555444433
No 112
>PRK04325 hypothetical protein; Provisional
Probab=90.20 E-value=1.8 Score=34.32 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
+..|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.++.+..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~--~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY--QQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 46789999999999999999999999999999999999999999997 56666653
No 113
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=90.17 E-value=1.4 Score=33.49 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
+++||.++..|+.....|+.+++.|++.++.+..-.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555555555555555555444433
No 114
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=90.17 E-value=0.32 Score=37.32 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.|.+.|+.+|..|.+++..|+.||..||.. ..++.+..|..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~----~~pe~l~q~~~ 54 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN----ASPEQLAQLQS 54 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CSSSSSTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHh
Confidence 455667777777777778888888877754 34555554443
No 115
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.15 E-value=1.6 Score=37.68 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLR---DELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr---~el~~L~~e~~~L~~EN~~L 309 (340)
++-....||+..-..+.+..-.|=.+.-+.|.+++-.|..+|..++ .++..|+.++..|......+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455655555555555555555555666666666666664442 33444444444444444443
No 116
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.11 E-value=1.3 Score=43.18 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 019499 260 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLC 317 (340)
Q Consensus 260 ARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~eL~~L~ 317 (340)
++.-=.+....++++..+++.++.++.++..++..|+.++..|+ .++..|+.+++.++
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666666666666666666666666666655544 33444445544443
No 117
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.10 E-value=1.3 Score=43.83 Aligned_cols=73 Identities=29% Similarity=0.317 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 244 ERELKRQKRKQSNR-----ESARRSRLRK-QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 244 E~e~KR~rRk~~NR-----ESARRSR~RK-q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|-|.|-.+-++.|. .++..+..-- |..|++|++.+..|+.++.+...+++.+++.+..|+.|...|+++|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566553 2444444443 5677888888888888888888888888888899999999999888765
No 118
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.03 E-value=5 Score=37.18 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
...+.+|+.++..|+.+...|..+.+....++..|+.+...|.++|..
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 119
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.99 E-value=1.5 Score=36.68 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNL--RDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~L--r~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.++.|+..|+.+...| +..+..|+-++..++-+.+.|.++|..+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3355555555555555 5555555555555566666666555555
No 120
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.96 E-value=5.4 Score=39.46 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
+.+|+.+.+.|+.+-..+..+...++.+...+..|...|..+
T Consensus 80 l~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 80 LEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 121
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.95 E-value=3.1 Score=31.71 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+.+++|...|..|..+...|..++..|+.+.+..+.|-.+-..+|-.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777777777666666555555543
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.91 E-value=3.7 Score=39.46 Aligned_cols=50 Identities=36% Similarity=0.458 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++..|..++..++.+...|..++..|..+.+.|..+...|+.++..+.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777666666666654
No 123
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.86 E-value=2.2 Score=33.48 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+..|+.+++.|..++......+..|..+
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.86 E-value=1.4 Score=37.05 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+.+|+++++.++.+|.+|+.+...|+.+++.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455556666666666665555555555555554
No 125
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.80 E-value=7.3 Score=32.01 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=58.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+....++..+..=..|...+..||+++..|..|...-.+++-.+.+..+.|..|+..|+..+.+-.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 44556667777778888999999999999999999999999999999999999999999998887654
No 126
>PRK00295 hypothetical protein; Provisional
Probab=89.72 E-value=2.3 Score=33.11 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
|+.|+..|+....-+..-|+.|.+.+.....++..|+.+|..|. +.+.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 78899999999999999999999999999999999999999987 6677665
No 127
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.72 E-value=1.9 Score=35.57 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
|+-|-...+.+|+.|+.+|..|..++..|+.+++..+.|-..|-
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666666666666666666555555543
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.70 E-value=7.2 Score=33.59 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+-..|..++..++..|..|..+|..|-.+|..+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334566677777777777777777777777654
No 129
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=89.54 E-value=1.5 Score=37.53 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 324 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~ 324 (340)
+|=.+|..|+.....|..++..|++.+..|..||..|+-+...|+ ++|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR--~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR--ERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH--HHhCC
Confidence 455678889999999999999999999999999999999999988 66665
No 130
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.54 E-value=2.2 Score=39.88 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
..|..++..|+.+|..|..+.+.|+..+..|..++..|+.+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 345555555555555555555555555555555555555554
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.41 E-value=6.7 Score=34.84 Aligned_cols=49 Identities=37% Similarity=0.500 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
..|+.+...|..++..|..++..|+.|+..|...|...+ ..|..|+..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q--~kv~eLE~~~ 103 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ--EKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 334444444444444455555555555555555555555 5566665543
No 132
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=89.34 E-value=1.2 Score=36.04 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
+..+...+..++..++++..+|..||..|+.|+..+..+..+..+-
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA 78 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIA 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4445677778888888888999999999999999888877776543
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.29 E-value=2.3 Score=39.11 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++...+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~ 168 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888877777766655544443
No 134
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=89.20 E-value=0.21 Score=42.02 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+|+.|...+..|..+|..|+.++..|+.++..++.+...|+..|...
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 578899999999999999999999999999999888888888776543
No 135
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.20 E-value=1.4 Score=33.44 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..|+.+...|...+..++.+++.|+.+...|.+-+++|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555544443
No 136
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.02 E-value=4.1 Score=31.40 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++...+..|-.+.++|......+..|..+...|+.++..++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456666666666666666666666666666666666654
No 137
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.96 E-value=3.9 Score=41.37 Aligned_cols=52 Identities=21% Similarity=0.481 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|-+.+...||.-+..+++||..|.-+++.+.++|.+.+.|+..|..+|.+.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4556667777888888999999999999999999988888888887666553
No 138
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.91 E-value=3.6 Score=37.85 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSE---------------ECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~---------------e~~~L~~EN~~Lk~eL~~ 315 (340)
+..+.+|+.+++.|+.+...|+.+++.+.+ +++.|+.+|..|+.+|+.
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555544444444 444455555555555543
No 139
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.79 E-value=1.1 Score=44.40 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...+...|..+|..-.+++.....|..+|..+|.+++
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777777777777777777777777775
No 140
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=88.59 E-value=5.8 Score=37.14 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
-+.||...++ ...++..|+.+-..|..++-.+...|..|+.|...|+.+...+..
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444433 677788888888888888888888888888888888888877753
No 141
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.53 E-value=3.5 Score=44.06 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.|+..++.+-..++.....|..++....+||+.|+.+|..|+.+|+..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777777777778888888877776653
No 142
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=88.42 E-value=1.6 Score=37.02 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
..+..|+.++..+..+++.|+..+..+..+...|+.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444443
No 143
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.38 E-value=8.4 Score=37.74 Aligned_cols=50 Identities=14% Similarity=0.342 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+++.++.++...+.+..+++.++...+.++..|+.+-.+|...+..+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777766666555543
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.37 E-value=3.3 Score=35.84 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..|+.+...|..+...+-+-+-.-..++..|+..|.++
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 333333333333333333333333334555555555544
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.31 E-value=4.9 Score=41.99 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=48.4
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCchhh
Q 019499 251 KRKQSNRESARRSRLRKQA----ECEELQARVETLSNENRNLRDELQRL----SEECEKLTSENNSIKEDLSRLCGPEAV 322 (340)
Q Consensus 251 rRk~~NRESARRSR~RKq~----~leeLE~rv~~Le~EN~~Lr~el~~L----~~e~~~L~~EN~~Lk~eL~~L~g~~~~ 322 (340)
+-.+.|-+++++.-+||.+ .++.++.++..++.+|..|++....+ ++..+.+..++..+.++|.+|+ +.|
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq--EQl 444 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ--EQL 444 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3345566777777666654 34556666666677776666654433 3344445555666666677776 777
Q ss_pred hhhhhcCCC
Q 019499 323 ANLEQSNPT 331 (340)
Q Consensus 323 ~~L~~~~~~ 331 (340)
++|.--+++
T Consensus 445 rDlmf~le~ 453 (493)
T KOG0804|consen 445 RDLMFFLEA 453 (493)
T ss_pred HhHheehhh
Confidence 777776666
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.16 E-value=7.6 Score=34.74 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.++..|..++...+.+...++.++..++.+...++.+|..|+.+...+.-|+.+.+...
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~ 149 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 44556667777777788888888888888888888889988888888888887766544
No 147
>PRK14127 cell division protein GpsB; Provisional
Probab=88.02 E-value=0.86 Score=38.89 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
+.|+++...++.|..||..|+.++..|+.++..+..+....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45566666666777777777777766666666666555443
No 148
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=88.01 E-value=6.6 Score=28.75 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 286 RNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
..|..++..|..++..|..++..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 149
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=88.01 E-value=2.4 Score=41.47 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
||-+++....|+..|+.++..|+.+.+.++++.+..++.|+-|+
T Consensus 69 ~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 69 KEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444444444444444444444444444443
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.00 E-value=1.6 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
++-.-=+..|+.|+++|..|+.+++++.-+|+.|+++-..|-.+...+..+++
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~~ 106 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGA 106 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456688999999999999999999999999999999999988888766554
No 151
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.98 E-value=2 Score=45.72 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 259 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+.+.|..-++.+.++..++..|++|...++.++..|..+...|+.||.+|..+|..++.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333444444455566666777777777777777777777777777777777777777654
No 152
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.86 E-value=3.9 Score=37.04 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++.++..+..+++.|++++++.+.|...|+.|++.+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888888888888887775
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.75 E-value=2.3 Score=41.49 Aligned_cols=53 Identities=25% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.-=+.+|+.|..+|+.+..+...++.++..++.++..|..+...|++.|....
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666667777777777777777777777776666543
No 154
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=87.74 E-value=3 Score=33.21 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.+.+..++.|+.||=.|+-+|-.|.+.+.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555666666666666655555555443
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.71 E-value=7.2 Score=35.60 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 297 EECEKLTSENNSIKEDLS 314 (340)
Q Consensus 297 ~e~~~L~~EN~~Lk~eL~ 314 (340)
.|+..|..++..|.+++.
T Consensus 151 DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.64 E-value=4.2 Score=38.60 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+++.+.+.++...|+.+++....+++.+..+...|+.+.+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444444444444444444444444444444444443
No 157
>PRK00736 hypothetical protein; Provisional
Probab=87.64 E-value=2.9 Score=32.58 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.++.|+..|+.....+..-|+.|.+.+.....++..|+.+|..|. +.+..+..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~--~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT--ERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 367888899999998889999998888888888899999888887 56666553
No 158
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.55 E-value=5.8 Score=40.94 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 019499 292 LQRLSEECEKL 302 (340)
Q Consensus 292 l~~L~~e~~~L 302 (340)
+..|.+++..+
T Consensus 381 l~~l~~~l~~~ 391 (562)
T PHA02562 381 LAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 159
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.32 E-value=9.5 Score=29.41 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+.-...++.++...+..|..|..+|..|+++++.|+.
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567788888888888888888888888877765
No 160
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.30 E-value=2.4 Score=39.61 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|+.|+.-|..|..+...|+..++.+...|++|.++|..|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L 48 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDL 48 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 161
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.29 E-value=2.4 Score=43.21 Aligned_cols=61 Identities=28% Similarity=0.288 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+.|..-|+|-.+--.+.|..++.+..|...||.+++++.+....|+.|+..|++-+..|..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666776666677777888888899999999999999999999999999998888864
No 162
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.27 E-value=5.1 Score=42.76 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+++-|..+|..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...++.+|
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344444444333234556666666666666666666666666666666666666666543
No 163
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.24 E-value=7.1 Score=35.28 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
++.++..|..++..|+.++..|.
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 164
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.13 E-value=4.2 Score=35.54 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
.-+..||+.+|..|+.|+..+..-...|...+..|+..+...++++..+.....+.
T Consensus 24 eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 24 EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 34456788899999999999999999999999999999999999988876654443
No 165
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=2.9 Score=42.23 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|-++++++|.++-+.|..-..+|+.++++|+++...|......|+.+.++
T Consensus 229 ~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 229 RLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444455555555555555556666666666666666666666665555
No 166
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.04 E-value=2.7 Score=32.07 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhhhh
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL-CGPEAVAN 324 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L-~g~~~~~~ 324 (340)
..++.++..|+.+++.|+.+|..|+.++..| ..++.+..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3455555566666666666666666666666 44444433
No 167
>smart00340 HALZ homeobox associated leucin zipper.
Probab=86.99 E-value=1.2 Score=32.19 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+.|++-|+.|..||++|+.++.+|+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777777777764
No 168
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=86.83 E-value=2.5 Score=31.67 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++..|++|+.++..-. | .=.-.-...+.++..|+.||..|+++|..++
T Consensus 2 w~~Rl~ELe~klkaer-E--~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKAER-E--ARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHhH-H--hccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666554322 1 1111223344555666666666766666553
No 169
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=86.70 E-value=3.7 Score=40.57 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.-+|+.|+.|-+.|+..-.+|..||..|++-+.
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544443
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.60 E-value=13 Score=33.29 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...++.+++.++.....+.+++..|.+++.+++.+-..++.++..+.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777667777777777777777764
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.47 E-value=2.7 Score=42.81 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 331 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~ 331 (340)
+..|..++..|+.++..++.|...|+++|.+|+. +..+.++...+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PTZ00454 31 LEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDS 78 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcC
Confidence 3333333444444444445555555555666554 3345555544443
No 172
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.36 E-value=6.4 Score=35.53 Aligned_cols=46 Identities=35% Similarity=0.599 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+|..+|+.|+.+|..|..++..+..+...|......|+.++..++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455666666677766666666666666666666666666665554
No 173
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.35 E-value=2.1 Score=43.10 Aligned_cols=60 Identities=32% Similarity=0.388 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 331 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~ 331 (340)
..|+.++..|+.+++.|+.++..|..++..++.+...|++++..+.. +..+..+...+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 64 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDD 64 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCC
Confidence 44555555566666666666666666666667777777777776664 3445555555444
No 174
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.31 E-value=7.9 Score=43.76 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..|+.++..|++.++.|..+...||++++.-
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466666666666666666666666666554
No 175
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=86.02 E-value=5.2 Score=42.72 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE-------NRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E-------N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++.++.-...+++-.+|...+-+++.+++++++|+.|+.. ..+..++++.|+.+++..+...+.|+.+|
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566778888888888889999999999998874 23455566666555555444444444443
No 176
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=86.01 E-value=3.2 Score=38.18 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+++.|..-|.-|+.+++.....++.|..++..|...+..+
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555554444443
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.96 E-value=7.2 Score=43.48 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++-..=+--+.+-.-.++.|++....|+.||++|..++..+..+..+|+.++.-|+.+|....
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444445556777778889999999999999999999999999999999999999999998554
No 178
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.94 E-value=2.5 Score=42.08 Aligned_cols=21 Identities=48% Similarity=0.645 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRD 290 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~ 290 (340)
+++-+..++..|..+|..|+.
T Consensus 42 El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 42 ELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 179
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=85.93 E-value=9.7 Score=39.37 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQA 276 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~ 276 (340)
.+.|.+|||....+-=||.|..=..+|.+|-.
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344555666677888888877777777754
No 180
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=85.83 E-value=7.3 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 019499 244 ERELKRQKRKQSNRESAR 261 (340)
Q Consensus 244 E~e~KR~rRk~~NRESAR 261 (340)
|.-++|.||-...+.++=
T Consensus 19 eel~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLM 36 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667777666666554
No 181
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.74 E-value=13 Score=34.76 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
+-|+||.+ ++.-.+-..|.-..-+++...|+..+..-+..-...-.+-..++.+...|..|...++.+|.+|+ ..|.
T Consensus 102 ~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~ 178 (192)
T PF11180_consen 102 DVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVR 178 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34444443 44555555566666677777788777777776666666667777777788888888888888877 6667
Q ss_pred hhhhcCCC
Q 019499 324 NLEQSNPT 331 (340)
Q Consensus 324 ~L~~~~~~ 331 (340)
.|+...+.
T Consensus 179 ~Lq~q~~~ 186 (192)
T PF11180_consen 179 QLQRQANE 186 (192)
T ss_pred HHHHHhcC
Confidence 66665443
No 182
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=85.70 E-value=9.4 Score=36.40 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
-+..+++++-|+.-|+.|+++|+.+..+
T Consensus 230 Ekk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 230 EKKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3445566777778888888888776544
No 183
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=85.56 E-value=4.1 Score=35.75 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+....+-+..|+.||.-|+..+-.+++.++.=+.....|+++|...
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4555677888999999999999999999999999999999999865
No 184
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=85.47 E-value=3.4 Score=41.61 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|..|++++.++..-..||.++.+++++++.-|..|.....+||+.|.+-
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999988763
No 185
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=85.39 E-value=2.7 Score=31.51 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
++...-.....++..|+.||..|+.+|..++.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444466688888999999999999987754
No 186
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=85.19 E-value=1.6 Score=44.04 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L 302 (340)
||..|++|++.|+.+.++|
T Consensus 40 EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 40 ENHSLKKENNDLKIEVERL 58 (420)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 187
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.09 E-value=6.9 Score=39.61 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
+++.+|+.++.+-+|..|-.+-+|+.. |+|..-...|+.+.+.|.+++..|+..|+-|....++
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444455555555444444433 3444444445555555555555555555555444443
No 188
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=85.05 E-value=5.2 Score=30.50 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+++.|..+...|..++..|..++..|+.+....+++...-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777666665543
No 189
>PRK14143 heat shock protein GrpE; Provisional
Probab=84.89 E-value=3.1 Score=39.88 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el 292 (340)
++|..++..|.++...+|++.
T Consensus 84 ~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 84 EELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 190
>PF15556 Zwint: ZW10 interactor
Probab=84.72 E-value=15 Score=34.94 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 255 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 255 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++|.+...-.+....++..|.+....++.....-+.+|+.|..++..|+.+-..-+++|
T Consensus 120 K~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKL 178 (252)
T PF15556_consen 120 KLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKL 178 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555554444444444444555555555555544443333333
No 191
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.70 E-value=3.2 Score=43.51 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+++|+.|+.+++.|...+..|.++|+.|+.++..|+.+...++.++....+
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~~~ 132 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATG 132 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence 455677777788788888888888888888888888888777777665443
No 192
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.67 E-value=11 Score=39.19 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
++|.+-+..+..+..+|+.++..|..++..|+.+...|+.+|..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555555666677777788888888888888888888888887765
No 193
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=84.47 E-value=19 Score=31.57 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDEL-QRLSEECE-------KLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el-~~L~~e~~-------~L~~EN~~Lk~eL~~L~ 317 (340)
.+.+..+..++..|+..+..|+.+. ..++.+.. .|...+..+|.+|..|-
T Consensus 54 ~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 54 EAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 3335555555555655555555443 44444444 45566666666666663
No 194
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.43 E-value=9.4 Score=38.24 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..|..-+...+.+|..|..++..|++++..+.-++..||+++..++.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 45556666777777777777777777777777777777777777653
No 195
>PRK14158 heat shock protein GrpE; Provisional
Probab=84.40 E-value=3.4 Score=38.53 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+++++|+.++..+.++...++.+..+
T Consensus 54 ~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 54 AEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 196
>PF14282 FlxA: FlxA-like protein
Probab=84.37 E-value=4.3 Score=34.02 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 271 CEELQARVETLSN----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 271 leeLE~rv~~Le~----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+..|+.++..|.. .......++..|+.++..|..+...|..+......
T Consensus 28 i~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 28 IKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 22455666777777777777777777776666543
No 197
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=84.21 E-value=3.5 Score=34.02 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
..+|..|+.++..|..||..|+.+|..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555444443
No 198
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=84.14 E-value=3 Score=40.67 Aligned_cols=48 Identities=31% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+-.+..+|+.+.+.|+.++.+|. .+..+.+.|+.||.+|++.|..-..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~~ 111 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKES 111 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34444555555555555554433 3445568899999999988876543
No 199
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.01 E-value=2.4 Score=36.44 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.+.|+.+|..|.+.+..|+.||.-||
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666666655
No 200
>PRK14139 heat shock protein GrpE; Provisional
Probab=84.00 E-value=3.5 Score=38.14 Aligned_cols=9 Identities=11% Similarity=-0.042 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019499 276 ARVETLSNE 284 (340)
Q Consensus 276 ~rv~~Le~E 284 (340)
.++..+.++
T Consensus 53 d~~lR~~Ae 61 (185)
T PRK14139 53 DSFLRAKAE 61 (185)
T ss_pred HHHHHHHHH
Confidence 333333333
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.97 E-value=15 Score=35.00 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+.+..|+....+++.+....++.+..|..|-..|+.++..++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555543
No 202
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=83.88 E-value=10 Score=34.24 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+-.+..+++++.|..|+-+-+.|-.++.+|..++...+....+|..+|..|...+.
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888999999999999999999999888777776666666666554444
No 203
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.85 E-value=13 Score=31.15 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 267 KQAECEELQARVETL--SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 267 Kq~~leeLE~rv~~L--e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
...++..||.+++.| ..+...|+-++..++-++..|..+.+.+..++.-|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666 55666666666666666666666666555554443
No 204
>PRK03918 chromosome segregation protein; Provisional
Probab=83.81 E-value=12 Score=40.96 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019499 273 ELQARVETLS 282 (340)
Q Consensus 273 eLE~rv~~Le 282 (340)
+|+.++..|+
T Consensus 204 ~l~~ei~~l~ 213 (880)
T PRK03918 204 EVLREINEIS 213 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 205
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=83.80 E-value=4 Score=34.57 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.|...+..|..++..+.+++++|+.++..+.+++..|.
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666654
No 206
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.77 E-value=18 Score=29.46 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLS-----NENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 269 ~~leeLE~rv~~Le-----~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.++..||.+++.-- .....|..++..|+++...|..+|..|+.+|.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666555322 24556888899999999999999999998875
No 207
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=83.71 E-value=12 Score=31.88 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHH
Q 019499 240 WIQDERELKRQKRKQSNRESARR 262 (340)
Q Consensus 240 ~~~DE~e~KR~rRk~~NRESARR 262 (340)
.+.+||+.+.++|..+||||-+.
T Consensus 47 ~MKEER~K~E~~~q~r~rES~~E 69 (121)
T PF10669_consen 47 RMKEERSKKEEKRQKRNRESKRE 69 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 36678999999999999998654
No 208
>PRK14155 heat shock protein GrpE; Provisional
Probab=83.66 E-value=2.5 Score=39.71 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el 292 (340)
++|+.++..+.++.+.+|++.
T Consensus 30 ~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 30 AALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 209
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.57 E-value=12 Score=42.02 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=61.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
+++-.-.++.-++++.+-....++..+|..+++.|..+-..+..+.+.+.+.++.|+.|...|..+++.|+.. +.++.
T Consensus 444 L~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~--~~~~~ 521 (980)
T KOG0980|consen 444 LRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT--LSNLA 521 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 3344456677788888888888888888888888888888877788888888888888888888888888743 45544
Q ss_pred hc
Q 019499 327 QS 328 (340)
Q Consensus 327 ~~ 328 (340)
+.
T Consensus 522 qs 523 (980)
T KOG0980|consen 522 QS 523 (980)
T ss_pred HH
Confidence 43
No 210
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.44 E-value=21 Score=33.10 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.++..+.+++..|+-|+..|..++.++.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554443
No 211
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=5.4 Score=34.64 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
|..-+++|+.+++.|+-+...|..+-+.|+++++.|
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555444444444444444333333333
No 212
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=83.16 E-value=6.9 Score=31.72 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
|+.|-.||+..+.||..|..+.+.|+.=+..|..
T Consensus 32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555554444443
No 213
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=83.12 E-value=1.2 Score=32.36 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
|-..|..|..++..|..++..|..||..||+++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 444555666666666666666666666666654
No 214
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.12 E-value=7 Score=34.49 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
.++-.+|..|..++..|+.+...|..+|..++...
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554443
No 215
>PRK14140 heat shock protein GrpE; Provisional
Probab=82.97 E-value=3.2 Score=38.54 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
|++|+.+++.|+.++.+|+.++.++..+++-+
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~ 70 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENY 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333333
No 216
>PF15058 Speriolin_N: Speriolin N terminus
Probab=82.95 E-value=2.9 Score=39.17 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|.|.++++.|-.||++|++++..+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4678889999999999999988554 4555555544443
No 217
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.90 E-value=17 Score=32.22 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 252 RKQSNRESARRSRLRKQAECEELQ-------ARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 252 Rk~~NRESARRSR~RKq~~leeLE-------~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+++..-+.+.+.-.+|++.++.|+ .+|..|+.+...+..++..++..++
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555553 2455555555555555555544433
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=16 Score=39.65 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+..+|+.+++.|+.++..|+.++..++.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444443
No 219
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.64 E-value=11 Score=35.02 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
++.+..|+.++..++.....|+.+|..|+.++..++..-..|..+......
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777777777777766666655443
No 220
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.60 E-value=4.8 Score=43.30 Aligned_cols=44 Identities=34% Similarity=0.575 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
|++|+.+++.++.+...|..++..+.++++.++.++.+|..++.
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444544455555555544444444444433
No 221
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.56 E-value=28 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.-.++|..+.+.|+.-+..|+.+...+.+.+..|..+...++.
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344333333333
No 222
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.44 E-value=1.6 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
++.|..++..|+.+|..|..|...|+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 223
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.41 E-value=7.7 Score=31.80 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|..++..|++++..|+.+...+.++|..
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 224
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=82.39 E-value=1.3 Score=32.13 Aligned_cols=43 Identities=37% Similarity=0.499 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
++++..+||+=|+.--... ..|.+|+.++..|..||..||.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3566777877776655443 357778888888888888877765
No 225
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.35 E-value=15 Score=30.03 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019499 305 ENNSIKEDLS 314 (340)
Q Consensus 305 EN~~Lk~eL~ 314 (340)
+-..|+.+|.
T Consensus 75 e~~~lk~~i~ 84 (108)
T PF02403_consen 75 EVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 226
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=82.18 E-value=14 Score=35.94 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECE-ELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~le-eLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
|++.|-.-|++..+.=--+|.+|-|...- +|+...+.-..--.+|+.+++.|+++..+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~E 69 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHE 69 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555554443 44444333333334444444444444333
No 227
>PRK14160 heat shock protein GrpE; Provisional
Probab=82.04 E-value=5.4 Score=37.69 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
+.|+.+++.|+.+...|+.++.+++.+++-++....+=+.++........+.+|...+|+
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 334444444444444444444444444444443333334444444455556666555554
No 228
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=81.99 E-value=2.2 Score=35.34 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
|+.+++.|..+++.|+.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666666666665544
No 229
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.98 E-value=9.8 Score=30.42 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 330 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~ 330 (340)
..+||+|+..|+.....-.+-|+.|...+........+++.+|..|. +.+.++..++-
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~--~kl~~~~~~~~ 60 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLT--EKLKDLQPSAI 60 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccc
Confidence 35788899999988888888888888888888888888888888887 66666665543
No 230
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.93 E-value=29 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++..+.+++.++.+..+..+++..+++.+...+....+|..+-..|.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555544444
No 231
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=81.91 E-value=31 Score=30.25 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.2
Q ss_pred hhhhhhhhcC
Q 019499 320 EAVANLEQSN 329 (340)
Q Consensus 320 ~~~~~L~~~~ 329 (340)
..|+.|.+..
T Consensus 105 ~rLk~LG~eV 114 (136)
T PF04871_consen 105 ERLKELGEEV 114 (136)
T ss_pred HHHHHcCCCc
Confidence 3444444433
No 232
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.89 E-value=21 Score=34.85 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECE---------ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~le---------eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++.+.++.....-+.+. ..|++.+. .++..+..+..+|..+..++..-+++++.|+.++..|+++++.
T Consensus 141 del~e~~~~el~~l~~~~--q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 141 DELNEMRQMELASLSRKI--QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444332 22332222 2444566677899999999999999999999999999999999
Q ss_pred hcC
Q 019499 316 LCG 318 (340)
Q Consensus 316 L~g 318 (340)
|+.
T Consensus 219 L~~ 221 (258)
T PF15397_consen 219 LQA 221 (258)
T ss_pred HHH
Confidence 873
No 233
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=81.84 E-value=1.1 Score=40.74 Aligned_cols=30 Identities=43% Similarity=0.647 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
|-+.|+.++++|+.|+..|+.|+ .+++++.
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34446666666666666666666 5555554
No 234
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.54 E-value=20 Score=34.44 Aligned_cols=39 Identities=33% Similarity=0.527 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..++.|+..++.++..|+.++..|+..|..|..+|..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 344444555555555555555555555555555555444
No 235
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=81.49 E-value=4.7 Score=35.51 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.+...|.-++.|+.+...=..+|..|+++++.+...|..|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444455555555555555666666666666666655543
No 236
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=81.35 E-value=7 Score=33.18 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
.-+||.++|..++-+..+-..|. -+.|+..|..+++.+.++...+..+..+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44677776643333333222222 2445566666666666555555555443
No 237
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=81.06 E-value=6.3 Score=40.13 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
|+.+++.|+.++..|..++..+++++..|+.|+..|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555556666666666666666666666777666653
No 238
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.02 E-value=12 Score=42.37 Aligned_cols=47 Identities=34% Similarity=0.492 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEE---------------CEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e---------------~~~L~~EN~~Lk~eL~~L~g 318 (340)
+.|+.+|+.|+..+.+|.-.|+.|+.| +.+|+.+|.+||+-|.+|+.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666666666664 34677888888888777763
No 239
>smart00340 HALZ homeobox associated leucin zipper.
Probab=81.01 E-value=3.5 Score=29.85 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.|+-|.+-.+.|..||..|+.++..|+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777665554
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.86 E-value=9.6 Score=34.50 Aligned_cols=9 Identities=33% Similarity=0.339 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019499 295 LSEECEKLT 303 (340)
Q Consensus 295 L~~e~~~L~ 303 (340)
.+.+.+.|+
T Consensus 173 ~~~~~~~Lk 181 (192)
T PF05529_consen 173 KEKEIEALK 181 (192)
T ss_pred HHHHHHHHH
Confidence 333333333
No 241
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.83 E-value=13 Score=30.06 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|..++...+.|+..|..-+..|+.++.+...-|..|..++..+
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~ 52 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNL 52 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 242
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.40 E-value=20 Score=35.54 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++..|..++..+..++...+.++..++.+...|......+.+++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443333
No 243
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.36 E-value=19 Score=31.52 Aligned_cols=50 Identities=10% Similarity=0.341 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++|+.|..+++...+-....++++..++..+..+..+...+..-+..|.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35555666666665555555666666665555555555555555555544
No 244
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.22 E-value=14 Score=42.94 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVE 279 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~ 279 (340)
..+..+.+++..+.+|+.++.
T Consensus 847 ~l~~e~e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 847 LNRKLIQDQQEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 245
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=80.19 E-value=6.5 Score=30.72 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
....++..++.+++.|+.||.+|+.|+..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566777777777777777777776654
No 246
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.13 E-value=16 Score=41.73 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++..+.+.|+-+++.|+.+...+..++..+..+|..|..|+..|...+....
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344556666666667777777777777777777777777777776666654
No 247
>PRK09039 hypothetical protein; Validated
Probab=79.98 E-value=22 Score=35.57 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+|..|+.+.+.|+.++..|+.++..++.+...++.+|..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333
No 248
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.98 E-value=9 Score=35.87 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++|..|....+.|..||..||+-|--|-
T Consensus 114 ~~KL~eLE~kq~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 114 QQKLKELEDKQEELIRENLELKELCLYLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44666666667777788888887776663
No 249
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.90 E-value=17 Score=43.19 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRK 267 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RK 267 (340)
+.+...+.++.|++.+.-+
T Consensus 322 rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655443
No 250
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=79.89 E-value=19 Score=30.62 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 298 ECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~ 315 (340)
|++.|...|.+|..++..
T Consensus 48 E~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 48 ENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 251
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=79.85 E-value=13 Score=30.49 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++.|...+..|..-...|.++...|..++..|...|++.|.++++..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444555666667777777666554
No 252
>PLN02678 seryl-tRNA synthetase
Probab=79.59 E-value=37 Score=35.48 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
|.+++..|++++..|+.+...|.++|.
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 253
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=79.35 E-value=19 Score=33.76 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
.++..++..|+.|...++.+|..|+.++..|..+
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 254
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=79.18 E-value=0.61 Score=44.43 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
+.-|..|||...++..|+.-...|..+.++|++++++|..||.+|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777777777777777777777777777
No 255
>PF14645 Chibby: Chibby family
Probab=79.06 E-value=7.7 Score=33.31 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
..|.++...|+.||.-|+-+++.|-.-+....+|...+..+|
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666777777777777777666666666665555554
No 256
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.04 E-value=18 Score=37.86 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
-+.|+..++..+-+|...|+.||.+ .++..|..++..|+.....|+..+.+|.+.+
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556666677777777777766654 4566788888888888888888888887644
No 257
>PRK02224 chromosome segregation protein; Provisional
Probab=78.97 E-value=22 Score=39.06 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 019499 270 ECEELQARVETL 281 (340)
Q Consensus 270 ~leeLE~rv~~L 281 (340)
++.+|+.+++.|
T Consensus 510 ~l~~l~~~~~~l 521 (880)
T PRK02224 510 RIERLEERREDL 521 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 258
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=78.93 E-value=13 Score=41.83 Aligned_cols=72 Identities=31% Similarity=0.419 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 257 RESARRSRLRKQA--ECEELQARVE-----------------TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 257 RESARRSR~RKq~--~leeLE~rv~-----------------~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|++||+.+.+++- ++..|+.+++ .-+.|+..|...++.+.+++..|.++...|..+|..|.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777766652 3344444333 11367777888899999999999999999999999999
Q ss_pred Cchhhhhhhhc
Q 019499 318 GPEAVANLEQS 328 (340)
Q Consensus 318 g~~~~~~L~~~ 328 (340)
+...+++|++.
T Consensus 809 ~g~~~a~lr~~ 819 (984)
T COG4717 809 GGGTVAELRQR 819 (984)
T ss_pred cCChHHHHHHH
Confidence 99999998864
No 259
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.91 E-value=22 Score=41.74 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
..++++..++..++.+...++.++..+++++..|+.+...|+.++..|.+.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~ 332 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDA 332 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456778888888888888888888888888999999999999999998877666443
No 260
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=78.88 E-value=3.5 Score=35.81 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
|..-+|+|+.++..|+-||..|+.+|..--
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345688999999999999999998886544
No 261
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=78.80 E-value=10 Score=29.42 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+++++.++..|+..+..+..++..+.+++.++..-+..|..
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666655544
No 262
>PRK14153 heat shock protein GrpE; Provisional
Probab=78.45 E-value=5.2 Score=37.34 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+++++|+.++..+.++...++.+..+
T Consensus 47 ~e~~elkd~~lR~~AEfeN~rKR~~k 72 (194)
T PRK14153 47 EEIESLKEQLFRLAAEFDNFRKRTAR 72 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 263
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.30 E-value=34 Score=32.76 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+++.--.+-+..+..|+.++..|+..|..|..+|..|+
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33333344455566666666666666666666555544
No 264
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.29 E-value=35 Score=35.07 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 290 DELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 290 ~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
.++..|++++..|+.+...|.+++
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 73 AEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 265
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=78.22 E-value=7.8 Score=39.34 Aligned_cols=54 Identities=30% Similarity=0.563 Sum_probs=37.7
Q ss_pred CCCCCchhhhhhhhcCCCCCC--CCCCCCCCC--CCCCCCccccCCCCCCCCCCCCCCCcc
Q 019499 25 TPSYADWSSSMQAFYGAGATP--PPFFASTVA--SPTPHPYLWGSQHPLMPPYGTPVPYQA 81 (340)
Q Consensus 25 ~~~~pdW~~smQaYy~~~~~p--p~~~~s~va--s~~phPYmWg~q~~~~ppygtp~PY~a 81 (340)
.|.-.|-+ .+|.-|-+..+| .+||.-.-+ +.-|||-.| +. -|+|+||-.+||++
T Consensus 71 s~~p~dis-~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~w-p~-y~~pt~~~~~p~p~ 128 (421)
T KOG3248|consen 71 SPLPADIS-PKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGW-PV-YPIPTFGFRHPYPG 128 (421)
T ss_pred CCCccccc-ccCCCCCCCCCccccccccCCccccccCCCccCC-cc-ccCCCCCCCCCCch
Confidence 35567888 589776655443 467754333 467999999 33 37889999999996
No 266
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.13 E-value=19 Score=37.94 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 294 RLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 294 ~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+|.++.++|..|..+|+..|.+|.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555553
No 267
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.99 E-value=23 Score=38.08 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+..|+.+++.++.+...+..++..+++++..++.+...|+.+|.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 268
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=77.87 E-value=8 Score=32.44 Aligned_cols=44 Identities=30% Similarity=0.421 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..+|..++.-.+.|-.-||..|..|..+++.|+.|...++.+..
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666666666666666665555555555555555443
No 269
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=77.82 E-value=16 Score=31.92 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDEL-QRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el-~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++..+...+..|+.++......+ ..+.++....+.....+..+|..
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555444444444 22233333333444444444433
No 270
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.72 E-value=39 Score=31.63 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
...|-.-...+..||..|+.+|..|.+++..|+..+..|..+-..|..
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566778899999999999999999998888888887777653
No 271
>PHA03162 hypothetical protein; Provisional
Probab=77.71 E-value=1.8 Score=38.17 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQ 293 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~ 293 (340)
+++.-+|+|+.++..|+-||..|+.+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999883
No 272
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.66 E-value=25 Score=36.64 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
+..|.+-...+..++..|..++..|..+.+.|+++|..|+ ..|..|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~l~~l~ 172 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ--NELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 3455666666777778888888888888888888888876 4444443
No 273
>PRK10698 phage shock protein PspA; Provisional
Probab=77.63 E-value=34 Score=32.20 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
+.+..|+.+++..+.....|+..+..|+.++..++..-..|..+...-.....+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777777777777777666554433333
No 274
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=77.57 E-value=5.1 Score=43.17 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+|-.+|+.|..|+.-||.++...+.-..+|+..+..|.++|+.+..
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888877777777777777777777776653
No 275
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.57 E-value=39 Score=29.84 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr-------~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+-..|.++..+++.++..+...+.+...|+ .++..|+.++..++.+...++.++..
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666555553 24555555555555554444444433
No 276
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=77.56 E-value=9.1 Score=41.61 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
++|+.+|+.|+.++..|..+|+.+..++...+.+..+...+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~ 122 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDK 122 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544444444333333333
No 277
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.32 E-value=7.9 Score=44.09 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|..++..|.+..--|+.||..|..+|..|
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444
No 278
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=21 Score=38.66 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Q 019499 277 RVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~eL~~L~ 317 (340)
....|+.||-.|++++..|+. +++.|+.|+.+|.++++-|.
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln 214 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN 214 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344566666666666666654 56666666666666655543
No 279
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=77.28 E-value=14 Score=31.16 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
||.|+.-+==++.+.+.|+.=-+.|+.|...-+++|+.|.++
T Consensus 57 rE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 57 REAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544443344444444433333444444444455444443
No 280
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.16 E-value=8.8 Score=34.33 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019499 264 RLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECE 300 (340)
Q Consensus 264 R~RKq~~leeLE~rv~~Le~---EN~~Lr~el~~L~~e~~ 300 (340)
|.--+..|.+...+++.|+. .|.+|+.+|..|+.++.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34444445555555555555 55556666666655555
No 281
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=77.16 E-value=14 Score=36.19 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRE-SARRSRLRKQA----------------ECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 248 KR~rRk~~NRE-SARRSR~RKq~----------------~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
|-.-+-++||| +-+.+|.||+. .|..||+++..++.++.....+|..++++
T Consensus 127 R~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 127 RIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 33344567777 44555555553 33444444444444444444444444443
No 282
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.11 E-value=16 Score=39.59 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE---NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E---N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.-..+..-..+|.+.--+--..+.+++.+||.+++.++.+ ...|...+..-+..+....++|..||.+|..|+
T Consensus 97 E~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq 173 (617)
T PF15070_consen 97 ESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQ 173 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHH
No 283
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.09 E-value=11 Score=41.14 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 019499 297 EECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 297 ~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
..++.|+.||..|+++|..|.+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 46778889999999999877643
No 284
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=76.93 E-value=13 Score=34.01 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=9.5
Q ss_pred HHHHHHHHhcCchhhhhhhh
Q 019499 308 SIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 308 ~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.+..+|.+++.....+.++.
T Consensus 106 ~i~~Kl~dmrnS~tFKSfEe 125 (162)
T PF04201_consen 106 AISRKLGDMRNSPTFKSFEE 125 (162)
T ss_pred HHHHHHHHHhcchHHHhHHH
Confidence 34445555555444444443
No 285
>PRK14157 heat shock protein GrpE; Provisional
Probab=76.70 E-value=7.5 Score=37.18 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 019499 266 RKQAECEELQA 276 (340)
Q Consensus 266 RKq~~leeLE~ 276 (340)
|-+++++-+.+
T Consensus 102 R~~AEfeNyRK 112 (227)
T PRK14157 102 RERAEFINYRN 112 (227)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 286
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=76.67 E-value=27 Score=29.10 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.....+|..|..++..|..++..|..+|..+.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543
No 287
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.64 E-value=10 Score=37.60 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
-+++-|..+++.|+....+|+.++.....+++.++.....|+.++..|+.
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777788888888888888888873
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.62 E-value=31 Score=31.77 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNEN 285 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN 285 (340)
..+++++|+.+++.|+.+.
T Consensus 108 ~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 108 LLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 289
>PF14282 FlxA: FlxA-like protein
Probab=76.62 E-value=12 Score=31.38 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNEN 285 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN 285 (340)
++.+..|+.++..|+...
T Consensus 50 ~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 290
>PRK14160 heat shock protein GrpE; Provisional
Probab=76.48 E-value=15 Score=34.67 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+..|+.++..|+.++..|..++..|+..+..+.++..-+|.+.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 291
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.44 E-value=29 Score=34.73 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 261 RRSRLRKQAECEELQARVETL 281 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~L 281 (340)
+|.-+|++.++++|++....+
T Consensus 354 qraeekeq~eaee~~ra~kr~ 374 (445)
T KOG2891|consen 354 QRAEEKEQKEAEELERARKRE 374 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344446666777776544443
No 292
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=76.17 E-value=39 Score=35.15 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+..|...-..|+.+|..|.++..+|..+...|..+-+.|+
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555565555555555555555555555554
No 293
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.07 E-value=22 Score=39.45 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+.|..|...+++++..++..-++|...+..|+.++.+|+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888888888888888999999999999999988
No 294
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.93 E-value=8.5 Score=38.77 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+.+|+.+++.|+.++..|..+++.++.++..|+.++..|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567778888888888888888888888888888887774
No 295
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.86 E-value=22 Score=39.54 Aligned_cols=62 Identities=29% Similarity=0.342 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 269 AECEELQARVETLSNENRNLRD---------------------ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~---------------------el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.++.++..++..+..||..|.. ++..|...++.++.||..|+-+|.-+.-.-.|++.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777778776654 4566777788888888888888888877777777766
Q ss_pred cCC
Q 019499 328 SNP 330 (340)
Q Consensus 328 ~~~ 330 (340)
...
T Consensus 172 ~~~ 174 (769)
T PF05911_consen 172 EYS 174 (769)
T ss_pred HHh
Confidence 544
No 296
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=75.86 E-value=43 Score=29.66 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
|..+.......+..-+++++.|..||..||..-..-- |++|..|++
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~L-Pd~V~RL~~ 111 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKRENEDLRRWADTPL-PDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCC-cHHHHHHhc
Confidence 3334444444555556677788888888887765543 677777765
No 297
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.75 E-value=22 Score=32.68 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++.|+..+..+......|+..|..|+.++..++.+-..|+.+.....
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555544433
No 298
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.72 E-value=22 Score=35.53 Aligned_cols=46 Identities=26% Similarity=0.415 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++-+|+.+++.+-.||.+|...|...+..-..|..|+..|+++...
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666655444
No 299
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.67 E-value=59 Score=30.96 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..|+..+..++.+...+...+..|+..+..|+.....|+.++..+
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555444444
No 300
>PRK12705 hypothetical protein; Provisional
Probab=75.59 E-value=40 Score=35.86 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|+++.+.|......|..+-..|..+...|......+..+|+.+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333344444444444
No 301
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.49 E-value=23 Score=36.80 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+=+.+|.+|+.++..++.+..+....+..+++.+..+......|..
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3344455555555555555544444444444444444444444433
No 302
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.48 E-value=26 Score=35.97 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|+.++..|++++..|+.+...|.+++..
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 303
>PHA03155 hypothetical protein; Provisional
Probab=75.47 E-value=3.7 Score=35.47 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
-+|+|+.++..|+-||..|+++|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998855
No 304
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=75.46 E-value=15 Score=36.45 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
++.+|+.+++.++.+...+..++..+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444443
No 305
>PRK14144 heat shock protein GrpE; Provisional
Probab=75.45 E-value=9.6 Score=35.75 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRN 287 (340)
Q Consensus 273 eLE~rv~~Le~EN~~ 287 (340)
+|..++..+.++...
T Consensus 63 elkdk~lR~~AefeN 77 (199)
T PRK14144 63 ENWEKSVRALAELEN 77 (199)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 306
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.23 E-value=15 Score=33.79 Aligned_cols=29 Identities=31% Similarity=0.635 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
|..+++.....|..|..+|..|..++..|
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554443
No 307
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.12 E-value=24 Score=39.12 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
-++..+.|+++++.++....+++..-++|...++.|+.|..+|+.
T Consensus 214 Ale~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 214 ALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666666663
No 308
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=75.11 E-value=28 Score=37.93 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+|..+++.+....++|++.|.+-+.++..|+.+.++-..++++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333333
No 309
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=74.93 E-value=15 Score=31.72 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
+..|+.-|++. +-++.++++|..++..+-.+...|..++..+..++..
T Consensus 40 ~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 40 LAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555433 2223444444444444444444444444444444333
No 310
>PRK15396 murein lipoprotein; Provisional
Probab=74.86 E-value=21 Score=28.82 Aligned_cols=45 Identities=13% Similarity=0.340 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
++++|..+|+.|..+..+|...+..++...+....|-.+--++|-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777666666655555544444443
No 311
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=74.83 E-value=15 Score=29.12 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+|+.....-+.+|..|+.++..|.++...|.
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333
No 312
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.77 E-value=59 Score=31.09 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
+-+..||.-+..++.+....+..+.+|.+++..|+.+..+|+.+
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888777777
No 313
>PRK11546 zraP zinc resistance protein; Provisional
Probab=74.67 E-value=11 Score=33.60 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLR-------DELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr-------~el~~L~~e~~~L~~EN~~Lk 310 (340)
+=....++|.+++-..+.|...|. ++|..|.+|+..|+.+...++
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444442 234444444444444444333
No 314
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=74.56 E-value=6.5 Score=30.32 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.++..|+..+.-|+.|...+ |..|-.|++.|+.+|..|.-
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccce
Confidence 34556666666666665542 22333344444444444433
No 315
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=74.24 E-value=35 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=14.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQAR--VETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 267 Kq~~leeLE~r--v~~Le~EN~~Lr~el~~L~~e~ 299 (340)
+++++++|++. +..+.....+|+.+|+.....+
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455443 3444444444444443333333
No 316
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=74.17 E-value=12 Score=31.40 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|+...+-...+...|++.+..|..+|..|+.+|.++.
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555556666666666666666654
No 317
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.14 E-value=10 Score=38.40 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 019499 271 CEELQARVETL 281 (340)
Q Consensus 271 leeLE~rv~~L 281 (340)
.++|..+|+.|
T Consensus 48 N~~Lk~eVerL 58 (420)
T PF07407_consen 48 NNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 318
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.04 E-value=29 Score=40.02 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
|+...+.|+.++..+..++..+..+
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1163)
T COG1196 451 LEEQLEELRDRLKELERELAELQEE 475 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 319
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=74.03 E-value=30 Score=34.78 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAE 270 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~ 270 (340)
+++|+++++|+..-..=+||..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777877666555555433
No 320
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.87 E-value=10 Score=30.32 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|+.+...|..++..|+.+...|..+...|+..|..+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555444
No 321
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=73.83 E-value=21 Score=33.00 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.+|++++++.+.+.+.++.+..+|+.+|..++
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666655555444
No 322
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.70 E-value=21 Score=37.19 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRK-----QAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 253 k~~NRESARRSR~RK-----q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
+..-|.+|++--+|- ++.+.++|..+..|+.||..|..+.-.+...+
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444432 34556666666666666666666555444333
No 323
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.53 E-value=36 Score=39.15 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
-+...|++|+.+++.++.+...|...+..+...+..|..+...|+.+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555554444443333333344333333333
No 324
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=73.48 E-value=31 Score=33.90 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRD------ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~------el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.-..+...-|..=+.-|.+-.. +..+..+...|..+...|+. +|..|++|+..++.|+....++|..+
T Consensus 118 ~~a~~~d~yR~~LK~IR~~E~s-l~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 118 QYADRLDQYRIHLKSIRNREES-LQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3445566666666656655432 33344444445555554442 45555555555555555444444443
No 325
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=73.46 E-value=5.8 Score=37.13 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+.+...|+.++..|+.++..|..|+..|++++..
T Consensus 111 E~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 111 EKDYESLKRQLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 3333444444444444444444444444444443
No 326
>PF15556 Zwint: ZW10 interactor
Probab=73.45 E-value=47 Score=31.75 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=55.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 254 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 254 ~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+.+++..+.|.-.+++...-|..+..|.....+++.+...-+++++.|..|...|+.+...-+
T Consensus 112 aKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeq 175 (252)
T PF15556_consen 112 AKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQ 175 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888889999999999999999999999999999999998876543
No 327
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.41 E-value=30 Score=39.92 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=7.0
Q ss_pred CCchhhhhhhhcC
Q 019499 28 YADWSSSMQAFYG 40 (340)
Q Consensus 28 ~pdW~~smQaYy~ 40 (340)
-..|..++.+-=|
T Consensus 528 ~~~y~~Aie~alG 540 (1163)
T COG1196 528 KEKYETALEAALG 540 (1163)
T ss_pred ChHHHHHHHHHcc
Confidence 3466665655544
No 328
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=73.39 E-value=18 Score=30.44 Aligned_cols=40 Identities=20% Similarity=0.442 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++...-+-|+.|++-...|+++|+.|+.-...|...+.+
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555667777777788888888888888888877654
No 329
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=17 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
..|...|..|.+.+..|..++..+..
T Consensus 111 ~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 111 EKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 330
>PF13514 AAA_27: AAA domain
Probab=73.30 E-value=39 Score=38.70 Aligned_cols=50 Identities=36% Similarity=0.555 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
..|..+...|..++..|..++..|..+...++.+|..|.+.+.+..+.+.
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e 941 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQE 941 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56677778888888888888888888888888899988887777766543
No 331
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=73.23 E-value=9.9 Score=39.85 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+.|+.....-..+...|+++.+.|+.+|..|-++|.+|+
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5677777777888889999999999999999999999987
No 332
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=73.19 E-value=12 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+++.+.-.|...|.+|..++..|.
T Consensus 21 ~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 21 DVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443333
No 333
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=73.15 E-value=16 Score=28.99 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
|...|..|..|+.+|..++..+++++..++.+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777766555
No 334
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=73.14 E-value=14 Score=31.39 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
....|..++..++.+++.|..+|..|++++..|...
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444455555555555566666666666655544
No 335
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=73.11 E-value=16 Score=36.97 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEE---CEKLTSENNSIKEDLS 314 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e---~~~L~~EN~~Lk~eL~ 314 (340)
....|.+||++|++|+..|+.+ ++.++.||..|+..+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555566665555555443 3445677776665443
No 336
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=72.96 E-value=14 Score=34.01 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRN-------------------------------LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~-------------------------------Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++|.++++.-...=+.++.. |+.++..|+++++.|..++..|+.++..
T Consensus 57 rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 57 RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCchhhhhhhhcCC
Q 019499 316 LCGPEAVANLEQSNP 330 (340)
Q Consensus 316 L~g~~~~~~L~~~~~ 330 (340)
+. ++...|..+++
T Consensus 137 ~~--eDy~~Li~Im~ 149 (170)
T PRK13923 137 TE--EDYRALIVIMN 149 (170)
T ss_pred HH--HHHHHHHHHHH
No 337
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=72.94 E-value=58 Score=27.66 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
..|..+++.++++|+.|..+...|+.++..|+.+-..|.+
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e 92 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEE 92 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3444455555555555555555555555555555333333
No 338
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=72.94 E-value=25 Score=31.46 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNEN 285 (340)
Q Consensus 272 eeLE~rv~~Le~EN 285 (340)
++|+.+++.|+.+|
T Consensus 54 eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 54 EELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 339
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.90 E-value=18 Score=40.24 Aligned_cols=66 Identities=35% Similarity=0.526 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHH
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEE----------------------------CEKLTSENNSIKEDL 313 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e----------------------------~~~L~~EN~~Lk~eL 313 (340)
+++-+-.+++..|..+++.++.||..|+-++..|.++ +.+|++|.++||.-+
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677889999999999999998888777764 345666666666665
Q ss_pred HH-hcCchhhhhhhh
Q 019499 314 SR-LCGPEAVANLEQ 327 (340)
Q Consensus 314 ~~-L~g~~~~~~L~~ 327 (340)
++ |-||..|...+.
T Consensus 207 rk~lpgpaa~a~mk~ 221 (769)
T PF05911_consen 207 RKKLPGPAALAQMKN 221 (769)
T ss_pred hccCCChHHHHHhHH
Confidence 54 566666654443
No 340
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=72.77 E-value=14 Score=35.11 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQ---RLSEECEKLTS 304 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~---~L~~e~~~L~~ 304 (340)
.+.+|.++.+.|++||.+|+.++. .|++|+++|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444 33444444443
No 341
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.69 E-value=27 Score=35.06 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
++..|..-+...++++..|..|...|+.+|.+++|.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344555667777788888888888888888888753
No 342
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.63 E-value=39 Score=29.21 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+...|+.++..+..++..|..+-..+..++..
T Consensus 56 ~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 56 ELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444333333333
No 343
>PHA03162 hypothetical protein; Provisional
Probab=72.41 E-value=5.3 Score=35.33 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56777888999999999999998876665
No 344
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.16 E-value=29 Score=42.40 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=60.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
.++-.+.+++++.-=++.+..+++|+..|++|+.+|+..+..+.+....++.|...+.++|..+...
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3446789999999999999999999999999999999999999999999999999999999987643
No 345
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=72.12 E-value=32 Score=31.81 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=6.1
Q ss_pred CCCcccccccc
Q 019499 195 MPATNLNIGMD 205 (340)
Q Consensus 195 ~~~t~Lnigmd 205 (340)
+|..-+|+|+.
T Consensus 89 i~~s~VnDGIC 99 (176)
T PF12999_consen 89 IPSSRVNDGIC 99 (176)
T ss_pred eehhhhcCCcC
Confidence 34555666654
No 346
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.11 E-value=47 Score=34.72 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+...|+.|-..++..+..++.++..|+.||..|.+++
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444443
No 347
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=72.07 E-value=18 Score=36.40 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
-|+|..+.+++|+.+.+.|..+|...+..|..|...+..|..--.-|...|..
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 46777888899999999999999999999999988888888777777776643
No 348
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.05 E-value=39 Score=37.31 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+++.+|+++++.|+..-..|.++++.+.+..+.|.
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 349
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.89 E-value=17 Score=38.42 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|+..++.+...+..|+....+++.++..|+.+++.|..+-+.|+.+|+.
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444466666666666666667777777777777777776666666655
No 350
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.87 E-value=45 Score=36.87 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++++.++..|+.+.+....+|..|+++.+.|+..-..|.++++++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 351
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=71.86 E-value=30 Score=36.51 Aligned_cols=76 Identities=29% Similarity=0.344 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHHHHHHHHHHHHHHHHHH-------------------
Q 019499 241 IQDERELKRQKRKQSNRESARRSR--------LRKQAE---CEELQARVETLSNENRNLRD------------------- 290 (340)
Q Consensus 241 ~~DE~e~KR~rRk~~NRESARRSR--------~RKq~~---leeLE~rv~~Le~EN~~Lr~------------------- 290 (340)
++-|...+|.||.+..|.++-+-+ .|-|.+ |-.|+.-...|+.+|.+|++
T Consensus 47 lqkEel~rr~rr~e~er~slm~~~g~l~ndvnrrlQ~hl~eir~lK~~nqKlq~~nqElrdL~cfldddrqkgrk~arew 126 (513)
T KOG3819|consen 47 LQKEELQRRLRRAEAERVSLMLAHGGLMNDVNRRLQQHLGEIRGLKDANQKLQQDNQELRDLCCFLDDDRQKGRKLAREW 126 (513)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhccccchHHHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHH
Confidence 345666777888777777764432 222322 33455555566666666643
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 291 --------------------ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 291 --------------------el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++..|+.+.+.|+.||-+|++-|...
T Consensus 127 qrfgr~tS~~~~~eva~~~qKl~~LE~kqe~l~renlelkelc~~~ 172 (513)
T KOG3819|consen 127 QRFGRQTSGAMLPEVAGYQQKLYELENKQEELLRENLELKELCHSR 172 (513)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhc
Confidence 56677777888888888888887753
No 352
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.86 E-value=23 Score=40.72 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++.+|+.+....+....+|...+..|+.++.++...+..++.++.+|.
T Consensus 676 ~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~ 723 (1074)
T KOG0250|consen 676 EILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELK 723 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444444444443
No 353
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.79 E-value=42 Score=36.85 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcCchh
Q 019499 304 SENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 304 ~EN~~Lk~eL~~L~g~~~ 321 (340)
.++++|..+|.+|.|..+
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 555556666666655443
No 354
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.54 E-value=49 Score=35.57 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
++|+.++..++.+...|..++..++.+++.+.
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~ 243 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQ 243 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 355
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=71.44 E-value=33 Score=34.00 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
|..+|...+..++.|..|+.+|+.+|+..+.
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556777788888888888887654
No 356
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=71.42 E-value=8.5 Score=33.20 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+++|-|..++..|+..|..|+.|...|
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444
No 357
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=71.35 E-value=8.1 Score=31.15 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
..|..||..|+.+|..|+.+++++..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666555444444333
No 358
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=71.31 E-value=19 Score=29.66 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhhhhhhhcC
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR----LCGPEAVANLEQSN 329 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~----L~g~~~~~~L~~~~ 329 (340)
+.+.|..||+.|..|....+.+ .+|..++.+.++ +...+.+..|++..
T Consensus 31 ~~~kL~~en~qlk~Ek~~~~~q-----vkn~~vrqknee~~~~~sr~~V~d~L~q~g 82 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAVAETQ-----VKNAKVRQKNEENTRRLSRDSVIDQLQQHG 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHhhccCCHHHHHHHHHHcC
Confidence 3455555555555544443332 334444444333 33344555565544
No 359
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.24 E-value=45 Score=30.59 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
+++.++..|+.....+...+..|+..+..|+.....|+.+...|...........
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666655444444333
No 360
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.10 E-value=20 Score=30.82 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
|+..++.|+.+...++.+++.+...++.
T Consensus 106 l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 106 LEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333
No 361
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=70.98 E-value=14 Score=28.31 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+++|+.++..|+.|...|+.++..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665544
No 362
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.97 E-value=64 Score=33.65 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.|++--.+-++++..|..+...|+.+...|..+-..|..+.+.|.++-+.|.
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555555554
No 363
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.89 E-value=44 Score=39.04 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+....|+.+++.|..++..|+.++..+..++..|..+...+..++..+
T Consensus 881 ~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 881 QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344556666666666666666666665555555555555555554443
No 364
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=70.76 E-value=22 Score=37.08 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++.+++.|.+++..|+.....|...|..|.
T Consensus 198 ~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 198 LKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555554444443
No 365
>PRK04863 mukB cell division protein MukB; Provisional
Probab=70.61 E-value=36 Score=40.60 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
+|+.+++.++.+..++..++..++.++..++.+...|+.+
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 366
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.58 E-value=16 Score=39.49 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++++|+.+++.|..+...|..+++.|+.++.++..|..+.+.++..+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 367
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.57 E-value=23 Score=29.21 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|+.....|..++..|..++..|..+...|+.+|..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666666666666655
No 368
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=70.47 E-value=39 Score=27.31 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.+.+.+++.|..-...|+.+|....+-...|..++..++..
T Consensus 15 ~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 15 NDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555556666666666666666666677666666653
No 369
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.45 E-value=16 Score=40.34 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
++.|+.+...|+.|..+++.+-.+|-..|..|+.||-.|..++..|..
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555666677777777766666653
No 370
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=70.43 E-value=8.6 Score=38.51 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
|+.|+..|.+|..+|+.-++|+.-|..-|++--.++++|. +.|..|+-.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLs--qTi~ELEEai 51 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLS--QTIRELEEAI 51 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4566666777777777766666666666665555666655 5555555433
No 371
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.39 E-value=10 Score=37.58 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLRKQAECEELQARVETL 281 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~L 281 (340)
|+.+|-.. |..+|++|..++..+
T Consensus 79 es~~~l~d-RetEI~eLksQL~RM 101 (305)
T PF15290_consen 79 ESENRLHD-RETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34444333 233455555444433
No 372
>COG4420 Predicted membrane protein [Function unknown]
Probab=70.38 E-value=24 Score=33.05 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..|..+|..|+..+..++.|+..|++.+.++..
T Consensus 137 ~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~ 169 (191)
T COG4420 137 AALHEKLDELRLDLGYVRDELDDLRELLAEIEP 169 (191)
T ss_pred HHHHHHHHHHHHhcchhhhchHHHHHHHHHhCc
Confidence 444444444444444555555555555555544
No 373
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.29 E-value=43 Score=37.16 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Q 019499 277 RVETLSNENRNLRDELQRLSE---ECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~---e~~~L~~EN~~Lk~eL~~L~g 318 (340)
....|+.||-.|+++|..|+. +++.|+.|+++|.+++.-|..
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ 142 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNS 142 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666654 456666666666666665543
No 374
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.06 E-value=19 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..+|+.+++.|..++++++.+...|..+|.
T Consensus 108 ~~elr~~~~~l~~~i~~~~~~~~~L~~~l~ 137 (181)
T KOG3335|consen 108 IMELRLKVEKLENAIAELTKFFSQLHSKLN 137 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444444444444443333
No 375
>PHA02109 hypothetical protein
Probab=69.96 E-value=13 Score=34.72 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
-|.+++-+|+.+++.|..|..+|+.+|..++.+...-.
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~L 227 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRL 227 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766665554433
No 376
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=69.77 E-value=10 Score=33.02 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNL 288 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~L 288 (340)
+++++|+.+++.|+.+.+.+
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544443
No 377
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.77 E-value=91 Score=28.98 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLR-KQAECEELQARVETLSN--------ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~R-Kq~~leeLE~rv~~Le~--------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+-+|.+-|+.++++-+-.-+.| +..++..+..++..|+. |-.+|..+|..++.+++.-...+..|..+|.-
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544333333 33455555555555554 33455566666665555555555555555443
No 378
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.75 E-value=24 Score=28.82 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=20.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQ----AECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 259 SARRSR~RKq----~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
|-++-|.||. .+++.|+.++..|..+|..|+.++
T Consensus 61 aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 61 ALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555554 355666666666666666666655
No 379
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=69.74 E-value=14 Score=34.59 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+|..++..++.|+..||+=|..-+++|..|+.
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777666666666655554
No 380
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=69.73 E-value=9.5 Score=33.21 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
++++++++.|+.+..+|..+++.++
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777766666554
No 381
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=69.63 E-value=17 Score=33.74 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+.=.|++++.|+++|..|+.+++.|
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666655
No 382
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.60 E-value=23 Score=35.75 Aligned_cols=9 Identities=44% Similarity=0.438 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019499 267 KQAECEELQ 275 (340)
Q Consensus 267 Kq~~leeLE 275 (340)
|-+++.+|+
T Consensus 26 Kleel~~lQ 34 (330)
T PF07851_consen 26 KLEELSKLQ 34 (330)
T ss_pred HHHHHHHHH
Confidence 333444444
No 383
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.49 E-value=25 Score=30.06 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
..|..+++.+..++..|+.+...|+.+|.+++ ..|+.+.+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q--~~l~~ll~~ 114 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQ--AKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 45666666677777777777777777777666 555555443
No 384
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=69.33 E-value=28 Score=34.06 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=7.7
Q ss_pred CCCcccccCCCCCCC
Q 019499 144 DGVSQSAESGSDGSS 158 (340)
Q Consensus 144 ~~~s~S~esgs~gSs 158 (340)
=+.+++++.++.|.+
T Consensus 92 LrlTC~~~~~s~Gv~ 106 (264)
T PF07246_consen 92 LRLTCIGSLGSEGVS 106 (264)
T ss_pred ceeeecCCCCcceeE
Confidence 344455555555554
No 385
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=69.26 E-value=37 Score=33.26 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 019499 303 TSENNSIKEDLS 314 (340)
Q Consensus 303 ~~EN~~Lk~eL~ 314 (340)
+.+++.|+.+|.
T Consensus 215 r~~~~~l~~el~ 226 (264)
T PF07246_consen 215 RNESKWLEHELS 226 (264)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 386
>PHA03161 hypothetical protein; Provisional
Probab=69.15 E-value=31 Score=31.16 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
.+-|+.+.+|+. .+|+..|..|..+.++.++|+..|..
T Consensus 45 ~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 45 KSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444433 44555555555555555555554443
No 387
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.04 E-value=20 Score=31.53 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++.|+.+++..+...+.-...|..|++.+..+..+++.+..++..+-
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3456777888888888888888888888888888888888877755443
No 388
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.89 E-value=12 Score=39.67 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+|++++..|.+.|..|.+.+ ...+.|...|+++|.+|..
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELL-------KAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Confidence 345555555555555555544 5556666666666666654
No 389
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=68.85 E-value=57 Score=25.90 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.++.|+++++.+..|...|..+.+.+.+..+........+-..+.++
T Consensus 34 ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 34 TIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555555555555554444444444444444444
No 390
>PHA03155 hypothetical protein; Provisional
Probab=68.78 E-value=6.9 Score=33.80 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
++.|..++.+|+.||..|+.+|..-.+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~ 38 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPE 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 45677777888999999999987754443
No 391
>PRK10963 hypothetical protein; Provisional
Probab=68.78 E-value=14 Score=34.48 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSN---ENRNLRDELQRLSEE 298 (340)
Q Consensus 272 eeLE~rv~~Le~---EN~~Lr~el~~L~~e 298 (340)
.+||.++..|-. +|..+-.++..|.-.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 555555555555443
No 392
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=68.73 E-value=28 Score=32.71 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
..++.++..++.+++.++.+...++.++..
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 105 DDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444445554555444443
No 393
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=68.73 E-value=7.8 Score=33.67 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
++.|..++.+|+.||..||.+|..-.+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 567777889999999999999998876
No 394
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=68.63 E-value=23 Score=29.19 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
..|+.+++.|+.+...|..++..+.+++..|+.+...
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 395
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=68.46 E-value=31 Score=37.79 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..|+.++..|+.+...|..++..+.++++.+..++..|..+|..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 288 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESL 288 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666555555555444443
No 396
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=68.43 E-value=13 Score=36.48 Aligned_cols=48 Identities=27% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 254 QSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 254 ~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+=|.|+-+.+ =+.+++.|.++|..|+..|++||++|...++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4466665443 46789999999999999999999999999988888773
No 397
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.40 E-value=47 Score=38.20 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|..++..++.++..++.+...|+.++..|
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 398
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=68.38 E-value=73 Score=29.88 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQAR--------------VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~r--------------v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+-.+++.+--.+...|-||- |.+|+.+ +..|+.|-..|+.+|+.=+.+...++.|+..+..+|.
T Consensus 95 ~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~ 172 (192)
T PF09727_consen 95 KMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLE 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556655554 3444431 3457777777888777777777777777777666655
Q ss_pred H
Q 019499 315 R 315 (340)
Q Consensus 315 ~ 315 (340)
.
T Consensus 173 e 173 (192)
T PF09727_consen 173 E 173 (192)
T ss_pred H
Confidence 4
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=68.36 E-value=11 Score=37.11 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCC
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 330 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~ 330 (340)
.+++.|+.++..++.++..++.|...|+++|.++.. +..+..+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLD 54 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEec
Confidence 344444445555555555555666666666666654 233344444333
No 400
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.31 E-value=26 Score=36.06 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|..+..+|++++..|++++..++.+...+...|-.+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444444444444444444444444444444333
No 401
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=68.31 E-value=31 Score=32.13 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEE--CEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 330 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e--~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~ 330 (340)
...+..|++++..|..++..+..+|..|..- ++++..+...|+.++.... +.|.++.....
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~--erl~~~k~g~~ 147 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYR--ERLKNIKAGTN 147 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--HHHHHHHHhcc
No 402
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.28 E-value=34 Score=29.09 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.|-.++.+++.|.=.|..|..++..|+.++.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333
No 403
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.18 E-value=25 Score=29.24 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|..+++.+...+..|..+...|+.+|.++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333
No 404
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=68.04 E-value=52 Score=28.34 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++.++.....++.++.....|-.-=....+|+...+.||..|+..|..
T Consensus 13 ~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 13 QAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 333444444444444444444444445566667777777777777654
No 405
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.02 E-value=38 Score=37.83 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+++......+.|+.+.+.|.+.++.++.||.+|+..+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444445555554443
No 406
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=68.02 E-value=13 Score=38.62 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 331 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~ 331 (340)
+||+|.++ |++.++.|+.+.+-++.+.. ...|+.|+..++++|..|++ +-.+.++...+++
T Consensus 55 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (438)
T PTZ00361 55 KCRLRLLK----LERIKDYLLLEEEFITNQEA-----QKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDE 116 (438)
T ss_pred hhHHHHHH----HHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCC
Confidence 47777654 44444555544444333321 13577778888888888877 4556666665555
No 407
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=68.01 E-value=11 Score=39.94 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
.++..|.++.+.|.+...+.+++|..|++++++|.
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 8 ATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566667777777777777777766666666553
No 408
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=67.91 E-value=35 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+++|...|..|.....+|...++.++.+.+....|+.+-.++|...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 445777888888888888888888888888888888888888777654
No 409
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=67.91 E-value=16 Score=36.01 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
.-++.|+.+++.|++||.+|+.+++.|+.+++....=...+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766666555444433333
No 410
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.86 E-value=39 Score=26.67 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
...+..|+..+..+...+..|+..++.+..+...|+.++.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555555555543
No 411
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=67.79 E-value=57 Score=32.00 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=3.1
Q ss_pred cccCCCCC
Q 019499 121 KKSKGTPG 128 (340)
Q Consensus 121 kk~Kg~~G 128 (340)
|||=..||
T Consensus 71 KkLY~ADG 78 (267)
T PF10234_consen 71 KKLYQADG 78 (267)
T ss_pred HHHHHhhH
Confidence 33333343
No 412
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=67.79 E-value=12 Score=36.93 Aligned_cols=38 Identities=39% Similarity=0.601 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.|+.+++.|+.+...|+.++..+++++..++.++..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555666666666665555
No 413
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.75 E-value=23 Score=34.37 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+..+++++..|..|...|..+++..+
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 414
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=67.71 E-value=35 Score=27.18 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+..|+.+-+.+--|+-.||+++...++|+.
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs 39 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELS 39 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777766644
No 415
>PHA03011 hypothetical protein; Provisional
Probab=67.60 E-value=33 Score=29.37 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLS-------EECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~-------~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+++|..+...|-.|-.-+..+++.|. +++.-|++|..+||+.+..
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 344555555555544444444444443 4455556666666655543
No 416
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=67.55 E-value=16 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..+++.+.+.|- ++-|++...-|+++|+.|-+||+.|
T Consensus 302 AARECRRKKKEY------VKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 302 AARECRRKKKEY------VKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHHHhHhHH------HHHHHhHHHHHhcccHHHHHHHHHH
Confidence 344444444443 3334444444555555555555444
No 417
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.47 E-value=24 Score=29.14 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+..++..|...++.|..+|..|..+|..++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677888899999999999999999998775
No 418
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=67.42 E-value=33 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
.+++|-.+-..|+.++..|..-|..|..
T Consensus 36 rleel~~knqqLreQqk~L~e~i~~LE~ 63 (120)
T PF10482_consen 36 RLEELFSKNQQLREQQKTLHENIKVLEN 63 (120)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 419
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=67.35 E-value=23 Score=30.26 Aligned_cols=42 Identities=36% Similarity=0.456 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
+-=|.-+++|-+||+..+.||-.|+.|...|-+=++-|..--
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaS 107 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSAS 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhh
Confidence 445667889999999999999999999988888777776543
No 420
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.25 E-value=27 Score=33.61 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.|.-+|..++.+.+-+..++.+...|..+++.|+.+.+.. |..|++++....
T Consensus 156 k~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 156 KRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34456666666666666666666666777777776666555 556777777664
No 421
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.23 E-value=17 Score=36.10 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|..-.+-++.+++.+.++..++.+...|..+|..|+.+++....|...|..++....
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.22 E-value=41 Score=26.03 Aligned_cols=45 Identities=7% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++++++..++.+...+..++..|+.....++.+...|..+|.++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555554
No 423
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.20 E-value=69 Score=33.90 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.++.++..+..++..|..++..|+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333
No 424
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.15 E-value=54 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLR-DELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr-~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..+++++.-+..|+-|...+- ..-..+...+...+.+...|+.+|+
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555444332 2333444555555555555555554
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=67.08 E-value=26 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
++++.||.+++.|+.+..+|..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777776655544
No 426
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=67.06 E-value=21 Score=37.39 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVAN 324 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~ 324 (340)
+++|...++.|+.+|.+|+..+..|++.+..++.+.-.||..+..++-....+.
T Consensus 408 ~~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak 461 (514)
T KOG4370|consen 408 EEELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAK 461 (514)
T ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 344555555555666666666666666666666666666555555544333333
No 427
>PLN02320 seryl-tRNA synthetase
Probab=67.02 E-value=15 Score=38.95 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 293 QRLSEECEKLTSENNSIK 310 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk 310 (340)
..|++++..|+.+...+.
T Consensus 140 k~lk~~i~~le~~~~~~~ 157 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLT 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 428
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.91 E-value=1e+02 Score=28.58 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019499 271 CEELQARVETL 281 (340)
Q Consensus 271 leeLE~rv~~L 281 (340)
.++|..++..+
T Consensus 120 ReeL~~kL~~~ 130 (194)
T PF15619_consen 120 REELQRKLSQL 130 (194)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 429
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=66.85 E-value=20 Score=38.21 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+-.++.++..||..|..+|..|++++..++.|+..|.+.|...
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555666666666666666666666666655555544
No 430
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=66.81 E-value=51 Score=26.83 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+..|-.++..|+.|...|..++..|
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555544444444444
No 431
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.75 E-value=46 Score=26.85 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT----SENNSIKEDLSRLCGP 319 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~----~EN~~Lk~eL~~L~g~ 319 (340)
+...++++.++..--.|...++..|-.|.....+++ .|..+|+.+|....+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~~ 79 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
No 432
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.75 E-value=84 Score=33.29 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRD 290 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~ 290 (340)
+..+..++..++.++.+|..
T Consensus 69 l~~~~~~~~~~~~~~~~l~~ 88 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTT 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 433
>PRK10698 phage shock protein PspA; Provisional
Probab=66.61 E-value=1e+02 Score=29.03 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++..|+.+...+...+..|+..+..|+.....++.+-..|.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555544443
No 434
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.49 E-value=45 Score=36.01 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++..++.+...|+.|+.+|+..+.|+..|+.+...|+
T Consensus 283 ~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 283 SQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555566666666666666666666555554
No 435
>PRK14161 heat shock protein GrpE; Provisional
Probab=66.40 E-value=27 Score=32.14 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRD 290 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~ 290 (340)
+++|..++..+.++...++.
T Consensus 35 ~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 35 IEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 436
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=66.40 E-value=29 Score=28.69 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+.|+++++.|+.+...|..++..++.++..|+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333
No 437
>PLN02678 seryl-tRNA synthetase
Probab=66.30 E-value=30 Score=36.17 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 300 EKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 300 ~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
..|..|...|..++..+. +.+..+...+|.
T Consensus 81 ~~Lk~ei~~le~~~~~~~--~~l~~~~~~iPN 110 (448)
T PLN02678 81 KELKKEITEKEAEVQEAK--AALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 333333333333333333 333333334433
No 438
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=66.28 E-value=23 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
.|..+++.|+..|..|..-++..+.+++.|.....+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk 37 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGK 37 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666555555555555444433
No 439
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.27 E-value=26 Score=33.12 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRL--SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNP 330 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L--~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~ 330 (340)
+++.+++.|++.|+.+-..|++-+++- -+++..++.|..+++.+|+.+. ..+..|.....
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~--~~~~~l~~~v~ 193 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLE--GQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc
No 440
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.21 E-value=91 Score=27.29 Aligned_cols=67 Identities=13% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+...||.+..|...=-.++-++.++.+ ..+.+..+++..+..+..+++.+..--..|..+|..|+
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~------~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISK------QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666555444444333333222 23333344444444444444444444444444444443
No 441
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=66.19 E-value=22 Score=29.42 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
++.|+.+++.|+.+...+..++..|+..++.+
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777777777777777666654
No 442
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=66.13 E-value=67 Score=29.44 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEEC-----EKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~-----~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
.++-|+.+.+.|..+..+|...+..+..++ -+=+.|...+..+|..|. +.|..+++.+..
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le--~~~~~~e~~~~~ 150 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLE--ARLKKLEPIYIT 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHhhccC
Confidence 345555555555555555555555554432 233467777777777776 667777765544
No 443
>PRK06835 DNA replication protein DnaC; Validated
Probab=66.11 E-value=50 Score=32.88 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019499 296 SEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~L 316 (340)
...++.|+.++..|+++...|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444
No 444
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=66.06 E-value=14 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..+...+..++..|++++.+|+.||..|+.-+.
T Consensus 70 ~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 70 ASELAAAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 445
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=65.99 E-value=38 Score=27.91 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|...-.||-.|+.++.+|+.=+ ..-|-..|.++|..|+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 3345557777777777776654 3344455555555543
No 446
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.99 E-value=28 Score=35.41 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDE 291 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~e 291 (340)
++++.|+.+++.|+.+..+|..+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666554
No 447
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.98 E-value=8.5 Score=40.09 Aligned_cols=38 Identities=37% Similarity=0.613 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
+|..+|..|..+|..|+.+++.|+-.|..+..||+-|+
T Consensus 47 ~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~ 84 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL 84 (552)
T ss_pred HHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh
Confidence 34444444555555555555555555555555444443
No 448
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=65.98 E-value=25 Score=28.87 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
..|+.|..-++.|+..|..|..+|..|-+.+.+.+.|.++.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888999999999999988888877777665443
No 449
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=65.96 E-value=14 Score=34.92 Aligned_cols=53 Identities=30% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhc
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRL-----------------------SEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L-----------------------~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|++.+.+-|..++..|+.|+..|+..+..+ ......|..+..+|+++|...+
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRER 151 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHH
No 450
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=19 Score=40.34 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|+++|...+..++....+|--+++.|++....|..||..|.+++..+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666677776677777777777666665
No 451
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.84 E-value=16 Score=35.64 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
.+.+|++++..|+.+.++|+. +++|+.+.+....+....-.+|..+.+.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g 105 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESG 105 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 357778888888888888877 6666666655555555555566666554
No 452
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=65.83 E-value=24 Score=36.73 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQ----------RLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~----------~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
..+-+++.+|+.|+.+...|++-|. .|++.+...+.++..|.++...|+....-+
T Consensus 413 ~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~sr 477 (486)
T KOG2185|consen 413 AALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQVSR 477 (486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 4555666777777776666655443 455566666666666666666665444433
No 453
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.82 E-value=1.1e+02 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.349 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+.++.++..|+........++..+...+..|..++..|..+|.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 454
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=65.62 E-value=1.3e+02 Score=29.91 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEE 273 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~lee 273 (340)
.+|+|+...|+.++.=+..|..-+-..++|++
T Consensus 150 ~EEeEL~~lr~~q~~fe~~R~aEl~e~qrlE~ 181 (291)
T PF06098_consen 150 MEEEELAALRRQQRAFEELRNAELAEVQRLEE 181 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777766644444444333333333
No 455
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=65.50 E-value=46 Score=33.04 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.+-++.+++-..++..|+.||..|...++.|.+..+
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq 84 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ 84 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333444445555666666666665555554433
No 456
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=65.24 E-value=21 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
..++.|+..|++-|....++|..|+
T Consensus 39 ~KvEeEI~TLrqvL~aKer~~~eLK 63 (162)
T PF04201_consen 39 AKVEEEIQTLRQVLAAKERHCAELK 63 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444444444444444444443
No 457
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=65.24 E-value=35 Score=35.06 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
...|+..+..|.+++..|..+...|+++|..+
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555555
No 458
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=65.17 E-value=13 Score=36.16 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+-.+..+|++++..|..|.+.|+.++.+
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445555555555566666666655543
No 459
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.11 E-value=44 Score=36.90 Aligned_cols=62 Identities=27% Similarity=0.291 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 260 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 260 ARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
+.++..-=|.+++..+.+++.++....+++.+|..+......|+.|+.+|+.+|..+...+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455555677777888888888888888888888888888888999999988888876554
No 460
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.08 E-value=69 Score=30.15 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.+.+.|....+..++|..++..|+.+.+.|+.++..+++.-.
T Consensus 106 n~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dp 147 (203)
T KOG3433|consen 106 NRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDP 147 (203)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 333444444444455556666666555555555555554433
No 461
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.03 E-value=22 Score=28.62 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
..+..+.+.|..+...|+.++..|+.|...|.
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444455555555555555444
No 462
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.95 E-value=69 Score=36.36 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 019499 243 DERELKRQKRKQSNRESARRSRLRK 267 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR~RK 267 (340)
|-++.+++-|.++|+-.-+.+.+-+
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366778888888887766665544
No 463
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.88 E-value=49 Score=38.11 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
-.+-.+.||+=-...-+++-..++++-.+.-.|+.++..|..+++.|.+++.+|...+..|...-+.|
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557788877777777777788888888888888887777777777777777766666665544443
No 464
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.81 E-value=77 Score=30.98 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 019499 250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSE-----------ECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~-----------e~~~L~~EN~~Lk~eL~~ 315 (340)
.++++.-|.-=+....+-..++..|+.+|+.|.++....+.+|..|.. ++..|..+...|+..-..
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 465
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.79 E-value=41 Score=34.53 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNENRNLRD-------------ELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~-------------el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+...++...+-++++.+|+.+++.|+.....|.. ++..|.+.+..|..+...|++++..|.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.55 E-value=55 Score=32.34 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
|...|+.|.+.+--.---|+.+-+---++++++++...-..|.-|..+|..- +.|..+..+||.+..+|+..-.|+
T Consensus 108 eql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEk----e~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 108 EQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEK----EVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhcCC
Q 019499 324 NLEQSNP 330 (340)
Q Consensus 324 ~L~~~~~ 330 (340)
.-.+.-+
T Consensus 184 ~kq~E~p 190 (333)
T KOG1853|consen 184 TKQTERP 190 (333)
T ss_pred HhhccCC
No 467
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.50 E-value=59 Score=38.01 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+...|+..-...-=++.+.+-.+++..+.+|+..+..++.|..+...++..|+++...|......|+.++..+.
T Consensus 517 ~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 517 ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.32 E-value=37 Score=33.73 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.++..+...+-+.++..=..++..+.+|+.++..|+.+......+...|+.+.+.......+-..-+..|.+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
No 469
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.27 E-value=2.2 Score=46.27 Aligned_cols=77 Identities=26% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 019499 241 IQDE-RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK---LTSENNSIKEDLSRL 316 (340)
Q Consensus 241 ~~DE-~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~---L~~EN~~Lk~eL~~L 316 (340)
+.|| .++|....+..-.|+.-..=++|.+.+.+|..+|+.|+..|..|.+.+..|.+++.. ++.++..++.+|..|
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred c
Q 019499 317 C 317 (340)
Q Consensus 317 ~ 317 (340)
.
T Consensus 376 e 376 (713)
T PF05622_consen 376 E 376 (713)
T ss_dssp -
T ss_pred H
No 470
>PRK14148 heat shock protein GrpE; Provisional
Probab=64.21 E-value=21 Score=33.38 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+..+-..++.+++.|+.+...|+.++..|+..+..+.++..-+|.++.+
T Consensus 31 ~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 31 GALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.18 E-value=44 Score=36.34 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++-+.-..-|.+|.+.|......++..+..|..++..|+++..........|...|.+|.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.17 E-value=59 Score=39.56 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 244 ERELKRQKRKQSN-RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 244 E~e~KR~rRk~~N-RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++++.+.|+++.+ +.=.|..+.-+...+..+...|+.+..++..|...+..++..++.|..+...|..+|+..
T Consensus 811 ~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 811 ERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.11 E-value=1.2e+02 Score=30.33 Aligned_cols=77 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 239 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 239 ~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
....||.+.|+. -...+.+=...-|.-=.+.+..+..+.+.|..+..+|+.++..|+.+...+-.+...|+++-..+
T Consensus 5 ~~~~~E~e~K~~-~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ei 81 (294)
T COG1340 5 LDKLDELELKRK-QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEI 81 (294)
T ss_pred HHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=64.01 E-value=16 Score=30.76 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
+.+++.++..|+.++.+|+.|++.|++...-.+..+
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~~ 108 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
No 475
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=63.98 E-value=50 Score=26.14 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.+-+.+.+.++..-..|+..+..-+.+...|...+..|..++..|. ..+..|.+
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls--~ql~rLs~ 70 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS--EQLERLSQ 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcC
No 476
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=63.98 E-value=2.3 Score=40.69 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
.+...+++.....+..|+.-|..|-.+++.|+.||.+|+++-..|........|
T Consensus 118 KDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~k~~~eke~ 171 (243)
T PF08961_consen 118 KDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLLKGPVEKEL 171 (243)
T ss_dssp ------------------------------------------------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhh
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.84 E-value=80 Score=35.16 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN-LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~-Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++-.+.++..+..++.+++-+..-++..++|+++.+.|+.+-.+ +.+....+++.+.+++.|.+.|-.+|++
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.83 E-value=81 Score=29.69 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 237 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 237 ~~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+...+.+-+-.+.+--.+--+-+.+.+++++ +++..+.-.+.-+..+.+|..++..|+++++.|+.|...+++
T Consensus 72 ps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e--~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 72 PSEAICDRKSVLQELESQLATGSQKKATLGE--SIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.69 E-value=44 Score=34.99 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 239 QWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 239 ~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+|.+++++.+|+- .+-+-++-+-.|.+.|+.+.+.-...-..|+.-+.-+.+++..|+..|..-..+|..|.
T Consensus 111 q~qq~~e~~erEv-------~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 111 QLQQNEEKLEREV-------KALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
No 480
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.66 E-value=89 Score=33.03 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRN-----LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~-----Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++-.+...++....+|.....-+.+|-+.-..-++++..+-.+|.. |.+..+++++.+..+..+...|.++|++|
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 481
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=63.58 E-value=16 Score=31.31 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
.++..|..+...|++||.-|+-+++.|...+....+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 482
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.41 E-value=43 Score=34.39 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQAR----VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~r----v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
++.|..+..-+..|.-|.+--+.+..+... ++.|..+..+|++++..|.++...++.+...+...|-.+-.++.
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
No 483
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=63.36 E-value=83 Score=35.76 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQA----ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~----~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
+.+.++..|....=.-|-.-.+||.+ .+.+||.+.+.+......|++.++..+++.+.|..+...+.++|..+.
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK-- 399 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK-- 399 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhhhhhhc
Q 019499 320 EAVANLEQS 328 (340)
Q Consensus 320 ~~~~~L~~~ 328 (340)
..|-.|++.
T Consensus 400 n~if~~e~~ 408 (1265)
T KOG0976|consen 400 NHIFRLEQG 408 (1265)
T ss_pred Hhhhhhhhc
No 484
>PRK14143 heat shock protein GrpE; Provisional
Probab=63.16 E-value=20 Score=34.46 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++..++..|+.+...|+.++..|+.++..|.++..-+|.++.+
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.11 E-value=32 Score=28.94 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARV-ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv-~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
+.......-|+.|.+.+.+=..+|++|-..+ +.-..-...=+.+-..+..++..|+.+.......|..|+ ..|..|+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq--~qL~~LK 78 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ--AQLKELK 78 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT--SSSSHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred hcC
Q 019499 327 QSN 329 (340)
Q Consensus 327 ~~~ 329 (340)
..+
T Consensus 79 ~v~ 81 (100)
T PF06428_consen 79 TVM 81 (100)
T ss_dssp HCT
T ss_pred HHH
No 486
>PRK14156 heat shock protein GrpE; Provisional
Probab=62.97 E-value=20 Score=32.99 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
|..+++.|+.+..+|+.++-++..+++-++.-..+=++++........+++|...+|+
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDn 89 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDN 89 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
No 487
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=62.84 E-value=56 Score=32.68 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+++|-....+.++.+++.....-+........+-+.|.+.+.+|.+||--|+.+|...+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=62.80 E-value=39 Score=31.88 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcC--chhhhhhhhcCCCCCCCcccC
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENN---SIKEDLSRLCG--PEAVANLEQSNPTQSCGEEEN 339 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~---~Lk~eL~~L~g--~~~~~~L~~~~~~~~~~~~~~ 339 (340)
++|+.-|.+.=.+.+.|..++..|..+|..|++++..|..-.. .|.+-|..|.+ .+.+-.+.....+....+..+
T Consensus 114 E~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~~~~~~~e~~~~~~~d~~~~~~e~ 193 (200)
T PF07412_consen 114 EERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTGQELDNLESLDEQELDSEEEEAED 193 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-------------S-S-TTTSS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccCcchhcccchhccccc
Q ss_pred C
Q 019499 340 S 340 (340)
Q Consensus 340 ~ 340 (340)
+
T Consensus 194 ~ 194 (200)
T PF07412_consen 194 S 194 (200)
T ss_dssp -
T ss_pred c
No 489
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.77 E-value=79 Score=37.12 Aligned_cols=89 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 241 ~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
+.-+-+.-..+++.+--+-.|+-+.=.|.+..+.++++..++++...|..++..|+++++.+...|..+...+.++. .
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~--~ 543 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN--S 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--H
Q ss_pred hhhhhhhcCCC
Q 019499 321 AVANLEQSNPT 331 (340)
Q Consensus 321 ~~~~L~~~~~~ 331 (340)
-.+.|+..+.+
T Consensus 544 ~rk~le~~~~d 554 (1317)
T KOG0612|consen 544 LRKQLEEAELD 554 (1317)
T ss_pred HHHHHHHhhhh
No 490
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=62.70 E-value=1.2e+02 Score=31.77 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
.+++ +++.-|.+.|...++--+.-+.- .+.|.+|++.+.-=-.+|..+|+.|..|+..|..+-.+|...|..+..|..
T Consensus 45 ~s~~-ir~~sr~l~~e~~~~t~~~q~dt-t~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ 122 (421)
T KOG2685|consen 45 QSER-IRRESRLLVNETNALTDKMQRDT-TEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLS 122 (421)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q ss_pred hhh
Q 019499 322 VAN 324 (340)
Q Consensus 322 ~~~ 324 (340)
|..
T Consensus 123 ia~ 125 (421)
T KOG2685|consen 123 IAE 125 (421)
T ss_pred HHH
No 491
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=62.60 E-value=37 Score=33.39 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 255 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 255 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-|....|-|+|.+ +....-...+-....+|.+++..|+.++..|..+...|++.+.++.
T Consensus 202 qe~~kleRkrlrnr---eaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 202 QEKIKLERKRLRNR---EAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred HHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
No 492
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=62.45 E-value=56 Score=26.04 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNE------NRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~E------N~~Lr~el~~L~~e~~~L~ 303 (340)
+...|..++--+.|..+|..++.++. .++|+.+++.|+.. ...+...+..|++.+..+.
T Consensus 13 ~~kkKElkKnK~~R~~~R~~~l~~kd-p~~l~~ei~~L~~~e~~~~l~~~~k~~l~~Le~~l~~v~ 77 (78)
T PF09429_consen 13 EQKKKELKKNKKERQKVREAKLAKKD-PDRLQEEIDKLEEMEFNGKLSKVEKEKLKKLEKDLKAVK 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
No 493
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.35 E-value=16 Score=36.90 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
...+.......|..+|+.++.....|..++..+.+....+..++..|...|.+|..-..-.+|...
T Consensus 131 ~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 131 LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEE
No 494
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.35 E-value=73 Score=35.70 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQA-ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~-~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...+..-..+++|.-.-+.-+.++. ++..|..+++.+...+..++..|..|+..+.....++..|...+..|+
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
No 495
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.35 E-value=1.2e+02 Score=28.41 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+.....-+-+-.....-...|..|..++...+........++..|..++..|..+....+.+...+.
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK01156 chromosome segregation protein; Provisional
Probab=62.30 E-value=95 Score=34.44 Aligned_cols=81 Identities=9% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN----------ENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~----------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+.+..+.++..++-+..+.--...+..+++|..++..|+. +...+..++..++.++..|..+...|..++
T Consensus 625 e~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i 704 (895)
T PRK01156 625 ENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTI 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCchhhhhhh
Q 019499 314 SRLCGPEAVANLE 326 (340)
Q Consensus 314 ~~L~g~~~~~~L~ 326 (340)
..+. ..+..|.
T Consensus 705 ~~l~--~~~~~l~ 715 (895)
T PRK01156 705 EILR--TRINELS 715 (895)
T ss_pred HHHH--hhHHHHH
No 497
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=62.20 E-value=25 Score=28.94 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
++-|++|++.|+.....|..++..++.++..+....++|-.+
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 498
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.13 E-value=51 Score=25.08 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSE---------------------ECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~---------------------e~~~L~~EN~~Lk~eL~~L 316 (340)
+++.++..|+.+...|..++..+.. .+..+..+...|...|..|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=62.02 E-value=37 Score=35.45 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
+.|+||.+|.+..-+.+-..-..-..-.+.|++++...+.+...|+.+...|+++...-.++++.+.
T Consensus 419 edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~sr~s~kKm~e 485 (486)
T KOG2185|consen 419 EDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQVSRESEKKMLE 485 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcc
No 500
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.97 E-value=94 Score=27.54 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 256 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 256 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
...+++..-.+.+..+..+...+..+......|......-.+.-..|+.+...+...+..-+ ..|..|...+.+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re--~~i~rL~~ENe~ 93 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQRE--QRIERLKRENED 93 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCHH
Done!