Query 019499
Match_columns 340
No_of_seqs 240 out of 1188
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.2E-14 1.1E-18 105.3 6.2 53 248-300 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.4 5.3E-13 1.8E-17 100.9 10.3 58 248-305 2-59 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 5.5E-13 1.9E-17 99.9 9.2 57 248-304 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 6E-13 2E-17 100.1 6.9 57 248-304 1-57 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 2E-12 6.9E-17 98.0 6.7 52 249-300 10-61 (63)
6 1ci6_A Transcription factor AT 99.3 1.3E-11 4.5E-16 93.4 7.8 57 247-303 1-57 (63)
7 1gd2_E Transcription factor PA 99.2 3E-11 1E-15 93.4 8.3 61 250-310 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 99.0 9E-10 3.1E-14 88.5 8.4 63 247-309 14-76 (87)
9 1gu4_A CAAT/enhancer binding p 99.0 2.1E-09 7.1E-14 84.8 8.2 56 248-303 15-70 (78)
10 3a5t_A Transcription factor MA 98.8 7.4E-11 2.5E-15 98.0 -3.6 62 241-302 30-91 (107)
11 2wt7_B Transcription factor MA 98.6 2.5E-07 8.7E-12 74.7 10.2 68 243-317 22-89 (90)
12 2oqq_A Transcription factor HY 97.4 0.0003 1E-08 49.1 5.6 36 268-303 2-37 (42)
13 1skn_P DNA-binding domain of S 97.1 0.00025 8.7E-09 57.1 2.6 32 245-276 59-90 (92)
14 1deb_A APC protein, adenomatou 96.7 0.0059 2E-07 44.3 7.2 48 271-318 5-52 (54)
15 2jee_A YIIU; FTSZ, septum, coi 96.5 0.011 3.9E-07 46.7 8.1 55 270-326 21-75 (81)
16 3s9g_A Protein hexim1; cyclin 96.3 0.012 4.1E-07 48.1 7.6 48 269-316 37-91 (104)
17 3hnw_A Uncharacterized protein 96.1 0.026 9E-07 48.4 9.0 52 266-317 72-123 (138)
18 2c9l_Y EB1, zebra, BZLF1 trans 96.0 0.032 1.1E-06 41.2 7.7 56 251-327 4-59 (63)
19 2w6a_A ARF GTPase-activating p 95.9 0.031 1E-06 41.9 7.4 41 271-311 22-62 (63)
20 2jee_A YIIU; FTSZ, septum, coi 95.9 0.03 1E-06 44.3 7.7 52 267-318 25-76 (81)
21 3he5_A Synzip1; heterodimeric 95.7 0.046 1.6E-06 38.3 7.1 45 270-314 4-48 (49)
22 1go4_E MAD1 (mitotic arrest de 95.4 0.044 1.5E-06 44.9 7.3 24 295-318 73-96 (100)
23 3oja_B Anopheles plasmodium-re 95.3 0.15 5E-06 51.1 12.2 45 273-317 534-578 (597)
24 3m48_A General control protein 95.3 0.019 6.4E-07 38.1 3.7 27 271-297 2-28 (33)
25 3vmx_A Voltage-gated hydrogen 95.2 0.071 2.4E-06 38.2 7.0 41 275-315 3-43 (48)
26 2oxj_A Hybrid alpha/beta pepti 95.2 0.026 8.7E-07 37.7 4.3 30 269-298 1-30 (34)
27 1ci6_A Transcription factor AT 95.0 0.071 2.4E-06 39.8 6.9 41 275-315 22-62 (63)
28 1kd8_B GABH BLL, GCN4 acid bas 95.0 0.054 1.8E-06 36.5 5.3 32 269-300 1-32 (36)
29 1uii_A Geminin; human, DNA rep 95.0 0.12 4.1E-06 41.0 8.3 34 283-316 46-79 (83)
30 3a7p_A Autophagy protein 16; c 94.9 0.31 1.1E-05 42.6 11.7 75 244-318 64-138 (152)
31 3hnw_A Uncharacterized protein 94.9 0.16 5.6E-06 43.4 9.6 50 268-317 81-130 (138)
32 3oja_B Anopheles plasmodium-re 94.8 0.14 4.7E-06 51.3 10.5 12 320-331 572-583 (597)
33 3a2a_A Voltage-gated hydrogen 94.8 0.072 2.5E-06 39.3 6.1 41 275-315 10-50 (58)
34 2v66_B Nuclear distribution pr 94.8 0.065 2.2E-06 44.6 6.6 45 272-316 38-82 (111)
35 1kd8_A GABH AIV, GCN4 acid bas 94.7 0.047 1.6E-06 36.8 4.6 31 270-300 2-32 (36)
36 3cvf_A Homer-3, homer protein 94.7 0.057 1.9E-06 42.5 5.7 48 270-317 7-54 (79)
37 2wt7_B Transcription factor MA 94.5 0.33 1.1E-05 39.0 10.0 54 261-317 29-82 (90)
38 3c3f_A Alpha/beta peptide with 94.5 0.05 1.7E-06 36.2 4.3 30 269-298 1-30 (34)
39 2zxx_A Geminin; coiled-coil, c 94.3 0.14 4.9E-06 40.2 7.2 35 283-317 34-68 (79)
40 1t2k_D Cyclic-AMP-dependent tr 94.1 0.29 1E-05 35.9 8.3 37 277-313 23-59 (61)
41 3efg_A Protein SLYX homolog; x 94.1 0.13 4.4E-06 40.1 6.6 50 269-318 14-63 (78)
42 3c3g_A Alpha/beta peptide with 94.1 0.073 2.5E-06 35.3 4.3 28 271-298 2-29 (33)
43 3m91_A Proteasome-associated A 94.0 0.21 7.3E-06 36.1 7.1 39 271-309 11-49 (51)
44 2oqq_A Transcription factor HY 94.0 0.18 6.3E-06 35.1 6.4 37 278-314 5-41 (42)
45 3m91_A Proteasome-associated A 93.9 0.22 7.4E-06 36.1 7.1 43 275-317 8-50 (51)
46 2kz5_A Transcription factor NF 93.9 0.0052 1.8E-07 49.4 -1.7 25 245-269 63-87 (91)
47 2v71_A Nuclear distribution pr 93.8 0.14 4.8E-06 46.2 7.3 27 303-331 94-120 (189)
48 3mq7_A Bone marrow stromal ant 93.8 0.29 1E-05 41.1 8.6 42 275-316 70-111 (121)
49 3cve_A Homer protein homolog 1 93.8 0.24 8.1E-06 38.3 7.5 46 272-317 3-48 (72)
50 2wt7_A Proto-oncogene protein 93.8 0.58 2E-05 34.7 9.4 36 278-313 25-60 (63)
51 3m9b_A Proteasome-associated A 93.8 0.057 1.9E-06 50.7 4.7 42 269-310 54-95 (251)
52 1wlq_A Geminin; coiled-coil; 2 93.7 0.2 6.8E-06 39.7 7.1 33 283-315 38-70 (83)
53 2bni_A General control protein 93.7 0.076 2.6E-06 35.4 3.9 28 270-297 2-29 (34)
54 1uo4_A General control protein 93.7 0.078 2.7E-06 35.4 3.9 28 270-297 2-29 (34)
55 2wvr_A Geminin; DNA replicatio 93.7 0.18 6E-06 46.0 7.6 29 284-312 116-144 (209)
56 1hjb_A Ccaat/enhancer binding 93.4 0.55 1.9E-05 37.4 9.3 32 270-301 44-75 (87)
57 1t6f_A Geminin; coiled-coil, c 93.3 0.12 4.2E-06 34.9 4.5 30 282-311 6-35 (37)
58 2wq1_A General control protein 93.3 0.12 4E-06 34.3 4.3 27 271-297 2-28 (33)
59 2yy0_A C-MYC-binding protein; 93.3 0.15 5.2E-06 37.0 5.3 32 276-314 19-50 (53)
60 2hy6_A General control protein 93.3 0.098 3.4E-06 34.9 3.9 29 270-298 2-30 (34)
61 2yy0_A C-MYC-binding protein; 93.2 0.14 5E-06 37.1 5.1 23 273-295 23-45 (53)
62 1gu4_A CAAT/enhancer binding p 93.2 0.72 2.5E-05 36.0 9.4 25 271-295 45-69 (78)
63 4h22_A Leucine-rich repeat fli 93.1 0.38 1.3E-05 39.5 8.0 47 269-315 37-83 (103)
64 1nkp_B MAX protein, MYC proto- 92.8 0.41 1.4E-05 36.9 7.6 34 285-318 49-82 (83)
65 1gd2_E Transcription factor PA 92.6 0.49 1.7E-05 36.2 7.6 31 271-301 38-68 (70)
66 2dfs_A Myosin-5A; myosin-V, in 92.5 0.71 2.4E-05 51.0 11.7 15 302-316 1028-1042(1080)
67 3m9b_A Proteasome-associated A 91.6 0.18 6.2E-06 47.3 5.0 56 275-330 53-109 (251)
68 1wt6_A Myotonin-protein kinase 91.6 2 6.9E-05 33.8 10.1 60 256-318 14-73 (81)
69 1fmh_A General control protein 91.6 0.25 8.7E-06 32.0 4.1 30 270-299 2-31 (33)
70 2xdj_A Uncharacterized protein 91.5 1.6 5.5E-05 34.3 9.6 50 270-319 21-70 (83)
71 2dgc_A Protein (GCN4); basic d 91.2 0.88 3E-05 33.9 7.5 33 281-313 28-60 (63)
72 1jnm_A Proto-oncogene C-JUN; B 91.2 1.6 5.4E-05 32.1 8.8 33 284-316 23-55 (62)
73 4etp_A Kinesin-like protein KA 91.2 0.64 2.2E-05 45.8 8.7 52 267-318 8-59 (403)
74 1nkp_A C-MYC, MYC proto-oncoge 91.2 1 3.6E-05 35.4 8.3 34 285-318 54-87 (88)
75 3nmd_A CGMP dependent protein 91.1 0.96 3.3E-05 34.9 7.7 23 270-292 41-63 (72)
76 2v4h_A NF-kappa-B essential mo 91.1 2.3 7.8E-05 35.3 10.5 61 256-316 32-95 (110)
77 3efg_A Protein SLYX homolog; x 90.8 0.77 2.6E-05 35.7 7.1 55 272-328 10-64 (78)
78 3u06_A Protein claret segregat 90.8 0.71 2.4E-05 45.8 8.6 51 268-318 9-59 (412)
79 3htk_A Structural maintenance 90.6 1.7 5.9E-05 31.2 8.5 48 267-314 10-57 (60)
80 3u1c_A Tropomyosin alpha-1 cha 90.6 5.3 0.00018 32.1 12.2 23 265-287 40-62 (101)
81 2dfs_A Myosin-5A; myosin-V, in 90.3 0.9 3.1E-05 50.2 9.7 38 273-310 981-1018(1080)
82 3q8t_A Beclin-1; autophagy, AT 90.2 1.3 4.4E-05 35.5 8.2 29 269-297 25-53 (96)
83 1a93_B MAX protein, coiled coi 90.1 0.49 1.7E-05 31.6 4.6 29 288-316 5-33 (34)
84 2r2v_A GCN4 leucine zipper; co 90.1 0.44 1.5E-05 31.8 4.3 28 270-297 2-29 (34)
85 2w83_C C-JUN-amino-terminal ki 90.0 0.5 1.7E-05 36.9 5.3 42 273-314 34-75 (77)
86 3o0z_A RHO-associated protein 89.6 4.3 0.00015 35.9 11.7 58 253-317 74-131 (168)
87 3jsv_C NF-kappa-B essential mo 89.5 3.2 0.00011 33.5 9.8 74 254-329 8-84 (94)
88 3i00_A HIP-I, huntingtin-inter 89.4 3.1 0.00011 34.8 10.1 47 263-309 34-80 (120)
89 1gmj_A ATPase inhibitor; coile 89.3 2.8 9.7E-05 33.2 9.2 26 291-316 52-77 (84)
90 3u1c_A Tropomyosin alpha-1 cha 89.0 7.7 0.00026 31.1 12.5 56 257-312 18-73 (101)
91 1nkp_B MAX protein, MYC proto- 88.8 0.49 1.7E-05 36.5 4.6 27 270-296 48-74 (83)
92 2eqb_B RAB guanine nucleotide 88.7 2.1 7.3E-05 34.7 8.3 24 293-316 72-95 (97)
93 3a7o_A Autophagy protein 16; c 88.6 1.9 6.6E-05 33.2 7.6 45 273-317 29-73 (75)
94 3nmd_A CGMP dependent protein 88.4 0.79 2.7E-05 35.4 5.3 29 289-317 39-67 (72)
95 1ic2_A Tropomyosin alpha chain 88.4 2.5 8.4E-05 32.6 8.3 46 270-315 21-66 (81)
96 1nlw_A MAD protein, MAX dimeri 88.2 0.87 3E-05 35.4 5.6 29 287-315 51-79 (80)
97 3iv1_A Tumor susceptibility ge 88.1 6.4 0.00022 30.7 10.4 53 265-317 21-73 (78)
98 3ghg_A Fibrinogen alpha chain; 88.0 1.1 3.7E-05 46.1 7.5 15 243-257 58-72 (562)
99 1ic2_A Tropomyosin alpha chain 88.0 7.6 0.00026 29.8 11.6 60 257-316 15-74 (81)
100 3ghg_A Fibrinogen alpha chain; 87.8 1.5 5.1E-05 45.1 8.4 46 266-311 107-152 (562)
101 2j5u_A MREC protein; bacterial 87.8 0.24 8.2E-06 46.0 2.5 37 275-315 25-61 (255)
102 4dzn_A Coiled-coil peptide CC- 87.7 1.1 3.8E-05 29.0 4.8 26 285-310 4-29 (33)
103 3mq9_A Bone marrow stromal ant 87.5 4.6 0.00016 39.3 11.6 18 298-315 444-461 (471)
104 1dh3_A Transcription factor CR 87.3 1.6 5.4E-05 31.6 6.2 26 292-317 24-49 (55)
105 2fxo_A Myosin heavy chain, car 87.3 6.1 0.00021 32.8 10.7 47 271-317 64-110 (129)
106 3u59_A Tropomyosin beta chain; 87.3 9.8 0.00033 30.3 12.2 18 267-284 42-59 (101)
107 3mq7_A Bone marrow stromal ant 87.2 12 0.00042 31.3 12.5 46 272-317 60-105 (121)
108 1jcd_A Major outer membrane li 87.0 3.4 0.00012 29.9 7.7 44 270-313 5-48 (52)
109 2v66_B Nuclear distribution pr 86.9 12 0.00041 30.9 12.2 22 273-294 7-28 (111)
110 1wt6_A Myotonin-protein kinase 86.9 4.1 0.00014 32.1 8.7 53 253-305 22-74 (81)
111 3o0z_A RHO-associated protein 86.8 3.9 0.00013 36.2 9.6 51 263-315 30-80 (168)
112 4b4t_K 26S protease regulatory 86.8 1.1 3.6E-05 44.6 6.7 47 272-318 45-91 (428)
113 2lw1_A ABC transporter ATP-bin 86.7 2 6.7E-05 33.6 6.9 49 268-316 21-75 (89)
114 1am9_A Srebp-1A, protein (ster 86.7 7.2 0.00025 30.0 10.1 68 250-317 4-77 (82)
115 4h22_A Leucine-rich repeat fli 86.6 2.2 7.6E-05 35.0 7.3 49 270-318 31-79 (103)
116 3htk_A Structural maintenance 86.5 4.2 0.00014 29.1 8.2 47 271-317 7-53 (60)
117 3u59_A Tropomyosin beta chain; 86.5 3.2 0.00011 33.1 8.3 52 258-309 19-70 (101)
118 1i84_S Smooth muscle myosin he 86.5 1.8 6.1E-05 47.9 8.9 6 59-64 565-570 (1184)
119 4emc_A Monopolin complex subun 86.3 1.2 4.2E-05 40.1 6.1 35 278-312 22-56 (190)
120 3trt_A Vimentin; cytoskeleton, 86.0 9.1 0.00031 28.7 11.0 57 251-310 20-76 (77)
121 3a7p_A Autophagy protein 16; c 85.6 6.1 0.00021 34.4 10.0 33 271-303 98-130 (152)
122 2xv5_A Lamin-A/C; structural p 85.5 4.6 0.00016 31.0 8.3 47 270-316 6-52 (74)
123 3na7_A HP0958; flagellar bioge 85.4 8.7 0.0003 35.1 11.7 22 273-294 94-115 (256)
124 2xdj_A Uncharacterized protein 85.4 4.6 0.00016 31.7 8.3 41 265-305 23-63 (83)
125 1dip_A Delta-sleep-inducing pe 85.3 0.5 1.7E-05 36.8 2.7 42 284-329 16-57 (78)
126 1nkp_A C-MYC, MYC proto-oncoge 85.2 1.7 5.8E-05 34.2 5.8 32 269-300 52-83 (88)
127 4ani_A Protein GRPE; chaperone 85.2 1.6 5.3E-05 40.0 6.4 55 273-327 63-117 (213)
128 3cve_A Homer protein homolog 1 85.1 4.2 0.00014 31.3 7.8 49 269-317 21-69 (72)
129 3q8t_A Beclin-1; autophagy, AT 85.0 13 0.00045 29.6 12.3 66 251-316 28-93 (96)
130 2w83_C C-JUN-amino-terminal ki 84.9 4.2 0.00014 31.7 7.8 44 274-317 7-57 (77)
131 1joc_A EEA1, early endosomal a 84.7 4.8 0.00017 33.4 8.7 49 268-316 10-58 (125)
132 2wuj_A Septum site-determining 84.6 0.89 3.1E-05 33.1 3.7 29 269-297 27-55 (57)
133 3oja_A Leucine-rich immune mol 84.5 9.8 0.00034 37.1 12.3 43 273-315 425-467 (487)
134 3he5_B Synzip2; heterodimeric 84.5 4.3 0.00015 28.6 6.9 15 288-302 29-43 (52)
135 2v71_A Nuclear distribution pr 84.4 16 0.00055 32.8 12.5 13 280-292 99-111 (189)
136 3iv1_A Tumor susceptibility ge 84.3 10 0.00035 29.6 9.7 55 263-317 12-66 (78)
137 4etp_A Kinesin-like protein KA 84.2 1.8 6.2E-05 42.6 6.9 49 268-316 16-64 (403)
138 3na7_A HP0958; flagellar bioge 84.2 7.3 0.00025 35.6 10.6 40 271-310 34-73 (256)
139 3cvf_A Homer-3, homer protein 84.0 4.7 0.00016 31.5 7.8 46 271-316 29-74 (79)
140 1gmj_A ATPase inhibitor; coile 83.8 7.5 0.00026 30.8 8.9 10 291-300 59-68 (84)
141 1lwu_C Fibrinogen gamma chain; 83.5 2.4 8.3E-05 40.9 7.3 48 269-316 12-59 (323)
142 2v4h_A NF-kappa-B essential mo 83.5 15 0.0005 30.5 10.9 47 270-316 63-109 (110)
143 3swy_A Cyclic nucleotide-gated 83.5 4.8 0.00016 28.5 6.9 42 273-317 2-43 (46)
144 1x8y_A Lamin A/C; structural p 83.4 12 0.00042 29.0 10.1 52 266-317 25-76 (86)
145 1gk6_A Vimentin; intermediate 83.4 3.1 0.00011 30.4 6.2 47 271-317 2-48 (59)
146 2ve7_C Kinetochore protein NUF 83.2 1.6 5.4E-05 40.5 5.6 59 247-305 119-184 (250)
147 3s4r_A Vimentin; alpha-helix, 83.1 6.6 0.00023 31.2 8.5 34 282-315 55-88 (93)
148 2ve7_C Kinetochore protein NUF 82.5 0.53 1.8E-05 43.7 2.2 36 279-314 144-179 (250)
149 3i00_A HIP-I, huntingtin-inter 82.4 8.4 0.00029 32.1 9.3 47 271-317 35-81 (120)
150 1go4_E MAD1 (mitotic arrest de 82.2 1.8 6E-05 35.4 4.9 30 270-299 13-42 (100)
151 3oja_A Leucine-rich immune mol 82.2 12 0.00041 36.5 11.9 26 270-295 436-461 (487)
152 3bas_A Myosin heavy chain, str 82.1 16 0.00056 28.5 12.0 52 266-317 32-83 (89)
153 1g6u_A Domain swapped dimer; d 81.8 5.9 0.0002 27.5 6.6 27 291-317 21-47 (48)
154 1wle_A Seryl-tRNA synthetase; 81.7 8.9 0.00031 38.9 11.0 17 268-284 83-99 (501)
155 3ra3_B P2F; coiled coil domain 81.4 1.2 4.1E-05 27.9 2.8 21 280-300 4-24 (28)
156 2fxo_A Myosin heavy chain, car 81.3 11 0.00038 31.2 9.7 44 273-316 80-123 (129)
157 1am9_A Srebp-1A, protein (ster 81.3 2.2 7.6E-05 32.9 5.0 27 269-295 50-76 (82)
158 3s9g_A Protein hexim1; cyclin 81.2 7 0.00024 31.9 8.0 24 269-292 65-88 (104)
159 1nlw_A MAD protein, MAX dimeri 80.8 3.7 0.00013 31.7 6.1 34 268-301 46-79 (80)
160 3he5_B Synzip2; heterodimeric 80.7 5.5 0.00019 28.1 6.3 36 277-312 11-46 (52)
161 1a93_B MAX protein, coiled coi 80.7 2.4 8.4E-05 28.3 4.2 27 282-308 6-32 (34)
162 4ati_A MITF, microphthalmia-as 80.6 4.7 0.00016 33.3 7.1 70 248-317 23-111 (118)
163 3qne_A Seryl-tRNA synthetase, 80.6 6.7 0.00023 39.8 9.6 52 264-315 42-103 (485)
164 2xzr_A Immunoglobulin-binding 80.4 22 0.00076 29.0 10.8 66 251-316 34-102 (114)
165 2dq0_A Seryl-tRNA synthetase; 80.1 8.4 0.00029 38.5 10.0 28 288-315 74-101 (455)
166 1wlq_A Geminin; coiled-coil; 2 80.0 10 0.00035 30.0 8.3 43 271-317 40-82 (83)
167 4emc_A Monopolin complex subun 79.7 4.9 0.00017 36.2 7.3 34 271-304 22-55 (190)
168 2lz1_A Nuclear factor erythroi 79.6 0.046 1.6E-06 43.9 -5.2 25 245-269 63-87 (90)
169 1gk4_A Vimentin; intermediate 79.1 20 0.00068 27.6 11.7 55 263-317 20-74 (84)
170 3swf_A CGMP-gated cation chann 79.1 4.8 0.00016 31.2 6.1 43 272-317 3-45 (74)
171 1fmh_B General control protein 79.0 3.9 0.00013 26.5 4.6 30 270-299 2-31 (33)
172 3ra3_A P1C; coiled coil domain 78.7 1.3 4.6E-05 27.7 2.3 25 279-303 3-27 (28)
173 1jcd_A Major outer membrane li 78.6 8.1 0.00028 27.9 6.9 40 276-315 4-43 (52)
174 1uix_A RHO-associated kinase; 78.3 6.3 0.00021 30.3 6.5 42 274-315 2-46 (71)
175 3lay_A Zinc resistance-associa 78.0 16 0.00055 32.2 10.1 20 291-310 114-133 (175)
176 1ses_A Seryl-tRNA synthetase; 77.9 23 0.00078 34.9 12.3 31 286-316 67-97 (421)
177 2ve7_A Kinetochore protein HEC 77.8 2.9 9.9E-05 39.8 5.6 28 277-304 186-213 (315)
178 3qh9_A Liprin-beta-2; coiled-c 77.7 12 0.00041 29.4 8.1 39 268-306 25-63 (81)
179 4dzn_A Coiled-coil peptide CC- 77.1 6.1 0.00021 25.5 5.2 22 274-295 7-28 (33)
180 3bbp_D GRIP and coiled-coil do 77.0 1.9 6.3E-05 33.1 3.2 46 272-317 18-63 (71)
181 1s1c_X RHO-associated, coiled- 76.9 7.7 0.00026 29.8 6.7 43 273-315 3-46 (71)
182 3trt_A Vimentin; cytoskeleton, 76.9 20 0.00068 26.8 9.1 45 274-318 33-77 (77)
183 2oxj_A Hybrid alpha/beta pepti 76.9 5 0.00017 26.7 4.8 27 287-313 5-31 (34)
184 1ik9_A DNA repair protein XRCC 76.8 6.6 0.00023 35.6 7.4 23 272-294 142-164 (213)
185 3ol1_A Vimentin; structural ge 76.4 30 0.001 28.3 12.5 37 280-316 66-102 (119)
186 3mov_A Lamin-B1; LMNB1, B-type 76.3 21 0.00071 28.5 9.4 50 268-317 36-85 (95)
187 3u06_A Protein claret segregat 76.3 5.5 0.00019 39.4 7.3 45 271-315 19-63 (412)
188 1fzc_C Fibrin; blood coagulati 76.0 1 3.4E-05 43.5 1.9 48 269-316 4-51 (319)
189 1p9i_A Cortexillin I/GCN4 hybr 76.0 2.5 8.7E-05 27.0 3.1 19 276-294 6-24 (31)
190 2xv5_A Lamin-A/C; structural p 75.9 17 0.00057 27.8 8.4 53 262-314 5-57 (74)
191 1wle_A Seryl-tRNA synthetase; 75.6 23 0.00078 35.9 11.8 28 287-314 120-147 (501)
192 3a5t_A Transcription factor MA 75.5 0.58 2E-05 38.7 0.0 33 284-316 59-91 (107)
193 3m0d_C TNF receptor-associated 75.3 22 0.00076 26.2 8.9 51 267-317 4-54 (65)
194 3w03_C DNA repair protein XRCC 75.3 6.7 0.00023 35.1 6.9 34 269-302 145-178 (184)
195 1p9i_A Cortexillin I/GCN4 hybr 74.8 4.2 0.00014 26.0 3.9 23 295-317 4-26 (31)
196 1zxa_A CGMP-dependent protein 74.6 4.4 0.00015 30.8 4.7 35 265-299 21-55 (67)
197 4b4t_K 26S protease regulatory 74.6 5.3 0.00018 39.6 6.7 43 269-311 49-91 (428)
198 3tnu_A Keratin, type I cytoske 74.5 35 0.0012 28.1 11.7 48 269-316 77-124 (131)
199 1hlo_A Protein (transcription 74.3 6.9 0.00023 29.8 5.9 24 258-281 18-41 (80)
200 3vkg_A Dynein heavy chain, cyt 74.2 13 0.00044 45.7 10.9 34 282-315 2034-2067(3245)
201 1lwu_C Fibrinogen gamma chain; 74.1 7.2 0.00025 37.6 7.3 26 271-296 28-53 (323)
202 4e61_A Protein BIM1; EB1-like 74.0 13 0.00045 30.6 7.8 30 269-298 11-40 (106)
203 1deq_A Fibrinogen (alpha chain 73.6 17 0.00057 36.0 9.8 45 269-313 113-157 (390)
204 1dip_A Delta-sleep-inducing pe 73.5 2.3 7.7E-05 33.1 2.9 25 271-295 17-41 (78)
205 3mq9_A Bone marrow stromal ant 73.5 38 0.0013 32.7 12.5 30 288-317 441-470 (471)
206 2zqm_A Prefoldin beta subunit 73.5 12 0.0004 29.6 7.4 38 280-317 74-111 (117)
207 1kd8_B GABH BLL, GCN4 acid bas 73.0 8.2 0.00028 26.0 5.1 28 287-314 5-32 (36)
208 3tnu_B Keratin, type II cytosk 72.9 3.7 0.00013 34.0 4.4 28 269-296 36-63 (129)
209 3a2a_A Voltage-gated hydrogen 72.9 10 0.00035 27.9 6.1 27 271-297 20-46 (58)
210 2wvr_A Geminin; DNA replicatio 72.9 17 0.00058 33.1 8.9 59 269-331 115-175 (209)
211 3tnu_B Keratin, type II cytosk 72.7 38 0.0013 27.8 11.7 46 271-316 77-122 (129)
212 2oa5_A Hypothetical protein BQ 72.7 1.9 6.6E-05 35.7 2.5 26 269-294 8-33 (110)
213 1m1j_C Fibrinogen gamma chain; 72.4 2.7 9.2E-05 41.8 4.0 43 274-316 89-131 (409)
214 3hhm_B NISH2 P85alpha; PI3KCA, 72.2 13 0.00043 36.4 8.6 54 265-318 201-254 (373)
215 3lss_A Seryl-tRNA synthetase; 71.7 21 0.00071 36.2 10.3 18 268-285 50-67 (484)
216 2oto_A M protein; helical coil 71.5 16 0.00056 30.9 8.3 32 271-302 52-83 (155)
217 1fxk_C Protein (prefoldin); ar 71.1 17 0.00059 29.6 8.1 31 272-302 98-128 (133)
218 1m1j_A Fibrinogen alpha subuni 71.1 42 0.0014 34.1 12.1 45 269-313 111-155 (491)
219 1gk7_A Vimentin; intermediate 70.9 8.7 0.0003 26.1 5.1 25 291-315 14-38 (39)
220 2akf_A Coronin-1A; coiled coil 70.9 10 0.00034 24.6 5.0 27 273-299 3-29 (32)
221 3oa7_A Head morphogenesis prot 70.8 14 0.00049 33.5 7.9 42 279-320 33-74 (206)
222 1zme_C Proline utilization tra 70.2 3.8 0.00013 29.5 3.4 25 268-292 43-67 (70)
223 3mud_A DNA repair protein XRCC 70.0 15 0.00051 32.7 7.8 34 272-305 131-164 (175)
224 2eqb_B RAB guanine nucleotide 70.0 42 0.0014 27.1 12.2 46 271-316 14-59 (97)
225 2xus_A Breast cancer metastasi 69.9 10 0.00036 27.1 5.5 39 264-308 5-43 (49)
226 2ocy_A RAB guanine nucleotide 69.2 40 0.0014 29.3 10.2 23 296-318 107-129 (154)
227 3w03_C DNA repair protein XRCC 69.2 13 0.00045 33.2 7.3 17 194-210 50-66 (184)
228 1lq7_A Alpha3W; three helix bu 69.0 13 0.00045 27.3 6.0 12 303-314 54-65 (67)
229 3he4_A Synzip6; heterodimeric 68.6 6.6 0.00023 28.0 4.2 37 269-305 17-53 (56)
230 3m48_A General control protein 68.6 7.6 0.00026 25.7 4.1 24 288-311 5-28 (33)
231 3plt_A Sphingolipid long chain 68.4 31 0.0011 31.9 9.9 28 247-274 92-120 (234)
232 2fic_A Bridging integrator 1; 68.3 19 0.00064 32.1 8.3 11 306-316 199-209 (251)
233 3c3g_A Alpha/beta peptide with 68.3 11 0.00037 24.9 4.8 27 287-313 4-30 (33)
234 1uii_A Geminin; human, DNA rep 68.0 17 0.00058 28.7 6.9 30 269-298 46-75 (83)
235 4b4t_M 26S protease regulatory 68.0 5.1 0.00017 39.8 4.9 46 273-318 29-74 (434)
236 1ses_A Seryl-tRNA synthetase; 67.7 40 0.0014 33.1 11.2 37 293-331 67-103 (421)
237 1kd8_A GABH AIV, GCN4 acid bas 67.4 13 0.00044 25.0 5.1 27 288-314 6-32 (36)
238 3qh9_A Liprin-beta-2; coiled-c 66.9 20 0.00068 28.2 7.0 12 284-295 27-38 (81)
239 3qwe_A GMIP, GEM-interacting p 66.7 58 0.002 30.7 11.6 76 252-328 126-221 (279)
240 3qne_A Seryl-tRNA synthetase, 66.6 27 0.00094 35.3 9.9 19 274-292 45-63 (485)
241 2b5u_A Colicin E3; high resolu 66.3 27 0.00092 35.8 9.7 23 258-280 317-339 (551)
242 2ke4_A CDC42-interacting prote 66.3 29 0.00099 27.8 8.2 30 288-317 60-89 (98)
243 3okq_A BUD site selection prot 66.0 51 0.0017 28.3 10.0 59 256-314 8-78 (141)
244 1m1j_B Fibrinogen beta chain; 65.7 71 0.0024 32.2 12.7 15 245-259 103-117 (464)
245 2b5u_A Colicin E3; high resolu 65.7 62 0.0021 33.2 12.1 28 271-298 316-343 (551)
246 3v86_A De novo design helix; c 65.6 7.1 0.00024 24.2 3.3 18 274-291 5-22 (27)
247 3c3f_A Alpha/beta peptide with 65.4 13 0.00045 24.6 4.8 27 287-313 5-31 (34)
248 2wuj_A Septum site-determining 65.1 6.4 0.00022 28.5 3.7 25 293-317 30-54 (57)
249 3viq_B Mating-type switching p 65.1 39 0.0013 26.7 8.5 51 269-319 8-70 (85)
250 3q0x_A Centriole protein; cent 65.1 13 0.00045 34.2 6.7 42 270-311 179-220 (228)
251 2i1j_A Moesin; FERM, coiled-co 65.0 4.8 0.00017 41.3 4.2 47 270-316 336-382 (575)
252 3uux_B Mitochondrial division 64.8 24 0.00083 32.8 8.4 51 268-318 176-226 (242)
253 3he5_A Synzip1; heterodimeric 64.7 27 0.00093 24.3 6.6 12 274-285 15-26 (49)
254 3viq_B Mating-type switching p 64.3 9.7 0.00033 30.2 4.8 26 272-297 4-29 (85)
255 2zvf_A Alanyl-tRNA synthetase; 64.2 3.6 0.00012 34.8 2.6 30 273-302 29-58 (171)
256 1fxk_A Prefoldin; archaeal pro 64.1 17 0.00057 28.3 6.3 29 286-314 75-103 (107)
257 2zxx_A Geminin; coiled-coil, c 63.8 42 0.0014 26.2 8.3 40 273-316 38-77 (79)
258 1joc_A EEA1, early endosomal a 63.4 25 0.00084 29.0 7.5 28 276-303 11-38 (125)
259 3ol1_A Vimentin; structural ge 63.3 60 0.0021 26.5 11.8 9 275-283 68-76 (119)
260 3tnu_A Keratin, type I cytoske 63.3 52 0.0018 27.1 9.5 14 300-313 87-100 (131)
261 4ath_A MITF, microphthalmia-as 63.2 13 0.00044 29.3 5.3 27 271-297 51-77 (83)
262 2wq1_A General control protein 63.1 16 0.00054 24.2 4.8 27 287-313 4-30 (33)
263 1gk4_A Vimentin; intermediate 62.7 38 0.0013 26.0 8.0 41 270-310 34-74 (84)
264 3e98_A GAF domain of unknown f 62.5 15 0.0005 33.8 6.6 13 284-296 97-109 (252)
265 1ytz_T Troponin T; muscle, THI 62.4 62 0.0021 26.4 11.2 37 280-316 46-89 (107)
266 2odv_A Plectin 1, HD1; plakin 62.3 79 0.0027 28.7 11.4 40 244-283 99-138 (235)
267 4e61_A Protein BIM1; EB1-like 62.1 38 0.0013 27.7 8.2 26 278-303 13-38 (106)
268 2l5g_B Putative uncharacterize 61.5 17 0.00057 25.3 5.0 29 288-316 7-35 (42)
269 2oto_A M protein; helical coil 61.3 36 0.0012 28.8 8.3 25 271-295 59-83 (155)
270 4dk0_A Putative MACA; alpha-ha 61.2 40 0.0014 31.1 9.5 25 291-315 123-147 (369)
271 1uo4_A General control protein 61.1 14 0.00047 24.6 4.3 24 288-311 6-29 (34)
272 2ocy_A RAB guanine nucleotide 61.0 56 0.0019 28.4 9.5 22 295-316 113-134 (154)
273 2dq0_A Seryl-tRNA synthetase; 60.5 17 0.00059 36.2 7.1 62 268-331 44-108 (455)
274 2q6q_A Spindle POLE BODY compo 60.2 55 0.0019 25.0 8.3 36 282-317 23-58 (74)
275 2dq3_A Seryl-tRNA synthetase; 60.1 8.5 0.00029 38.0 4.8 28 288-315 73-100 (425)
276 2yko_A LINE-1 ORF1P; RNA-bindi 60.0 15 0.00051 34.0 6.0 42 275-316 5-46 (233)
277 1l8d_A DNA double-strand break 59.9 61 0.0021 25.4 11.0 34 281-314 69-102 (112)
278 3ljm_A Coil Ser L9C; de novo d 59.9 15 0.0005 23.5 4.1 20 272-291 4-23 (31)
279 3tq2_A KE1; parallel three hel 59.8 24 0.00081 23.2 5.2 32 286-317 4-35 (36)
280 2bni_A General control protein 59.8 13 0.00045 24.7 4.1 25 288-312 6-30 (34)
281 2oa5_A Hypothetical protein BQ 59.5 5 0.00017 33.2 2.5 24 292-315 10-33 (110)
282 1ytz_T Troponin T; muscle, THI 59.4 25 0.00086 28.7 6.7 42 268-309 48-89 (107)
283 2q6q_A Spindle POLE BODY compo 59.4 57 0.002 24.9 8.3 55 272-328 6-60 (74)
284 1fmh_A General control protein 59.3 11 0.00038 24.3 3.5 24 293-316 4-27 (33)
285 1ik9_A DNA repair protein XRCC 59.0 35 0.0012 30.8 8.3 32 273-304 136-167 (213)
286 3mtu_A Tropomyosin alpha-1 cha 58.9 17 0.00058 27.7 5.3 46 270-315 17-62 (75)
287 1l8d_A DNA double-strand break 58.6 64 0.0022 25.3 11.2 52 266-317 28-98 (112)
288 2zvf_A Alanyl-tRNA synthetase; 58.5 12 0.0004 31.6 4.8 31 286-316 28-58 (171)
289 2xu6_A MDV1 coiled coil; prote 58.3 26 0.00088 27.0 6.1 49 269-317 21-69 (72)
290 3q0x_A Centriole protein; cent 58.3 56 0.0019 30.0 9.6 42 273-314 175-216 (228)
291 1fxk_A Prefoldin; archaeal pro 58.1 31 0.0011 26.7 6.9 33 285-317 67-99 (107)
292 1x4t_A Hypothetical protein LO 58.0 29 0.00098 27.9 6.6 54 269-323 32-85 (92)
293 2aze_A Transcription factor DP 58.0 26 0.00087 30.6 6.9 16 265-280 22-37 (155)
294 1m1j_C Fibrinogen gamma chain; 57.8 25 0.00087 34.8 7.7 48 268-315 90-137 (409)
295 1fxk_C Protein (prefoldin); ar 57.8 32 0.0011 27.9 7.2 40 272-311 91-130 (133)
296 3m0a_A TNF receptor-associated 57.7 51 0.0017 23.8 8.4 43 273-315 9-51 (66)
297 2pnv_A Small conductance calci 57.6 13 0.00046 25.8 4.0 21 274-294 14-34 (43)
298 4gkw_A Spindle assembly abnorm 57.5 92 0.0032 26.7 12.0 21 298-318 141-161 (167)
299 1gk6_A Vimentin; intermediate 57.4 51 0.0018 23.8 8.1 47 268-314 6-52 (59)
300 2hy6_A General control protein 56.8 25 0.00085 23.3 5.0 27 287-313 5-31 (34)
301 3vmx_A Voltage-gated hydrogen 56.7 51 0.0017 23.5 7.2 29 269-297 11-39 (48)
302 3ghg_C Fibrinogen gamma chain; 56.7 11 0.00038 37.5 4.9 48 268-315 90-137 (411)
303 2z5i_A TM, general control pro 56.6 20 0.00069 25.6 5.0 20 273-292 9-28 (52)
304 1j1d_C Troponin I, TNI; THIN f 56.3 27 0.00094 29.6 6.6 16 303-318 92-107 (133)
305 3ni0_A Bone marrow stromal ant 56.1 79 0.0027 25.5 9.0 26 296-321 66-91 (99)
306 2j5u_A MREC protein; bacterial 56.0 5 0.00017 37.0 2.2 20 280-299 23-42 (255)
307 1f5n_A Interferon-induced guan 55.9 73 0.0025 32.8 11.0 8 309-316 572-579 (592)
308 1d7m_A Cortexillin I; coiled-c 55.6 52 0.0018 26.4 7.7 40 261-300 17-56 (101)
309 2zdi_C Prefoldin subunit alpha 55.6 24 0.00083 29.6 6.3 36 275-310 104-139 (151)
310 2no2_A HIP-I, huntingtin-inter 55.4 82 0.0028 25.5 11.5 37 281-317 59-95 (107)
311 2z5i_A TM, general control pro 55.4 46 0.0016 23.7 6.7 39 277-315 6-44 (52)
312 2xnx_M M protein, M1-BC1; cell 55.0 1E+02 0.0035 26.6 10.0 35 288-322 78-112 (146)
313 2r2v_A GCN4 leucine zipper; co 54.9 27 0.00092 23.2 4.9 27 287-313 5-31 (34)
314 2er8_A Regulatory protein Leu3 54.5 6.5 0.00022 28.5 2.2 22 268-289 48-69 (72)
315 2ke4_A CDC42-interacting prote 54.4 64 0.0022 25.8 8.2 27 298-326 63-89 (98)
316 3q4f_C DNA repair protein XRCC 54.2 23 0.00079 31.7 6.0 23 276-298 161-183 (186)
317 2wg5_A General control protein 54.1 11 0.00038 30.5 3.7 40 292-331 9-49 (109)
318 1deb_A APC protein, adenomatou 53.9 60 0.002 23.4 7.1 11 303-313 16-26 (54)
319 3ljm_A Coil Ser L9C; de novo d 53.7 24 0.0008 22.5 4.3 22 295-316 6-27 (31)
320 2wg5_A General control protein 53.4 8.7 0.0003 31.1 3.0 23 279-301 10-32 (109)
321 2l5g_B Putative uncharacterize 53.2 30 0.001 24.0 5.2 33 272-304 5-37 (42)
322 3fpp_A Macrolide-specific effl 53.2 74 0.0025 29.0 9.7 26 291-316 122-147 (341)
323 3ra3_A P1C; coiled coil domain 53.0 7.8 0.00027 24.2 2.0 14 280-293 11-24 (28)
324 1t3j_A Mitofusin 1; coiled coi 52.9 46 0.0016 26.8 7.1 41 272-316 50-90 (96)
325 3l4q_C Phosphatidylinositol 3- 52.9 46 0.0016 29.3 7.7 45 272-316 113-157 (170)
326 3sjb_C Golgi to ER traffic pro 52.8 63 0.0022 25.9 7.8 16 288-303 54-69 (93)
327 1j1d_B Troponin T, TNT; THIN f 52.3 29 0.00099 28.3 5.9 25 280-304 46-70 (106)
328 2ve7_A Kinetochore protein HEC 52.3 26 0.00089 33.2 6.6 33 268-300 184-216 (315)
329 3gp4_A Transcriptional regulat 52.2 52 0.0018 27.3 7.7 23 275-297 87-109 (142)
330 4b4t_J 26S protease regulatory 52.2 15 0.00053 36.2 5.1 56 269-331 25-81 (405)
331 3k29_A Putative uncharacterize 52.2 1.2E+02 0.0043 26.6 12.3 19 246-264 31-49 (169)
332 4ath_A MITF, microphthalmia-as 52.1 33 0.0011 26.9 6.0 39 268-317 38-76 (83)
333 3rrk_A V-type ATPase 116 kDa s 51.8 30 0.001 32.4 6.9 35 271-305 94-128 (357)
334 3onj_A T-snare VTI1; helix, HA 51.5 69 0.0024 25.1 8.0 24 294-317 69-93 (97)
335 1tu3_F RAB GTPase binding effe 50.7 28 0.00095 27.1 5.2 24 308-331 44-67 (79)
336 4a3a_A Amphiphysin; structural 50.5 60 0.002 29.4 8.5 50 264-316 139-195 (243)
337 1lrz_A FEMA, factor essential 50.5 47 0.0016 32.0 8.2 21 269-289 247-267 (426)
338 3he4_A Synzip6; heterodimeric 50.5 6 0.0002 28.3 1.3 44 273-316 7-50 (56)
339 3a7o_A Autophagy protein 16; c 50.4 84 0.0029 24.1 8.3 44 267-310 30-73 (75)
340 1deq_A Fibrinogen (alpha chain 50.1 1.1E+02 0.0036 30.4 10.5 32 286-317 116-147 (390)
341 3iox_A AGI/II, PA; alpha helix 49.9 47 0.0016 33.9 8.2 29 271-299 36-64 (497)
342 3lss_A Seryl-tRNA synthetase; 49.9 42 0.0014 33.9 7.9 28 289-316 109-137 (484)
343 4ani_A Protein GRPE; chaperone 49.7 35 0.0012 31.0 6.7 26 269-294 73-98 (213)
344 3sja_C Golgi to ER traffic pro 49.7 28 0.00097 26.2 5.0 22 293-314 35-56 (65)
345 2c9l_Y EB1, zebra, BZLF1 trans 49.6 74 0.0025 23.3 8.7 43 246-292 3-45 (63)
346 4b4t_L 26S protease subunit RP 49.5 17 0.00057 36.1 4.9 30 289-318 71-100 (437)
347 3plt_A Sphingolipid long chain 49.4 89 0.0031 28.8 9.4 47 269-315 131-179 (234)
348 2lw1_A ABC transporter ATP-bin 49.4 50 0.0017 25.4 6.7 48 269-316 29-82 (89)
349 3rrk_A V-type ATPase 116 kDa s 49.3 55 0.0019 30.6 8.3 30 269-298 226-255 (357)
350 2yo3_A General control protein 49.3 46 0.0016 31.4 7.6 53 262-314 209-261 (268)
351 2w6a_A ARF GTPase-activating p 49.0 80 0.0027 23.5 8.3 22 281-302 39-60 (63)
352 1ykh_B RNA polymerase II holoe 48.8 32 0.0011 28.8 5.8 20 276-295 92-111 (132)
353 2zqm_A Prefoldin beta subunit 48.4 95 0.0032 24.2 12.5 39 285-325 72-110 (117)
354 1yke_B RNA polymerase II holoe 48.0 36 0.0012 29.2 6.2 28 276-303 92-119 (151)
355 3k66_A Beta-amyloid-like prote 47.9 1.1E+02 0.0038 28.3 9.8 51 268-318 37-92 (239)
356 2b9c_A Striated-muscle alpha t 47.8 1.3E+02 0.0044 25.6 11.6 70 248-317 37-121 (147)
357 2dq3_A Seryl-tRNA synthetase; 47.5 34 0.0012 33.6 6.8 34 296-331 74-107 (425)
358 2pnv_A Small conductance calci 46.9 25 0.00086 24.4 4.0 23 280-302 13-35 (43)
359 4dk0_A Putative MACA; alpha-ha 46.8 39 0.0013 31.2 6.8 35 281-315 120-154 (369)
360 1j1d_C Troponin I, TNI; THIN f 46.8 1E+02 0.0035 26.1 8.7 45 268-312 64-108 (133)
361 2no2_A HIP-I, huntingtin-inter 46.7 1.1E+02 0.0039 24.6 12.3 53 266-318 51-103 (107)
362 2yko_A LINE-1 ORF1P; RNA-bindi 46.7 44 0.0015 30.9 6.9 46 270-315 7-52 (233)
363 1lwu_B Fibrinogen beta chain; 46.4 29 0.00098 33.3 5.8 26 288-313 33-58 (323)
364 4b4t_J 26S protease regulatory 46.4 32 0.0011 33.9 6.3 26 275-300 38-63 (405)
365 3jsv_C NF-kappa-B essential mo 46.3 1.1E+02 0.0039 24.5 8.6 49 269-317 40-88 (94)
366 1a93_A Coiled coil, LZ, MYC pr 46.1 37 0.0013 22.5 4.6 27 290-316 7-33 (34)
367 2p22_A Suppressor protein STP2 46.0 35 0.0012 30.2 5.9 33 279-311 52-84 (174)
368 4fla_A Regulation of nuclear P 45.9 1.4E+02 0.0049 25.5 10.8 11 269-279 86-96 (152)
369 1j1e_C Troponin I, TNI; THIN f 45.7 46 0.0016 29.6 6.6 43 269-318 65-107 (180)
370 4b4t_L 26S protease subunit RP 45.6 21 0.00072 35.4 4.9 29 283-311 72-100 (437)
371 3gp4_A Transcriptional regulat 45.5 1.3E+02 0.0044 24.9 9.5 28 277-304 82-109 (142)
372 2qyw_A Vesicle transport throu 45.4 1.1E+02 0.0036 24.3 8.2 30 265-294 45-74 (102)
373 3vp9_A General transcriptional 45.3 90 0.0031 24.9 7.6 44 274-317 41-88 (92)
374 3lay_A Zinc resistance-associa 45.3 76 0.0026 27.8 8.0 17 285-301 115-131 (175)
375 2gkw_A TNF receptor-associated 45.0 34 0.0012 29.5 5.7 34 271-304 2-35 (192)
376 2e7s_A RAB guanine nucleotide 44.8 46 0.0016 28.3 6.2 20 298-317 97-116 (135)
377 1t6f_A Geminin; coiled-coil, c 44.5 39 0.0013 22.7 4.5 13 274-286 12-24 (37)
378 2zdi_C Prefoldin subunit alpha 42.8 60 0.0021 27.1 6.7 34 271-304 107-140 (151)
379 1zxa_A CGMP-dependent protein 42.6 36 0.0012 25.7 4.7 17 301-317 36-52 (67)
380 2j69_A Bacterial dynamin-like 42.5 71 0.0024 33.1 8.5 41 275-315 351-391 (695)
381 3q4f_C DNA repair protein XRCC 42.2 41 0.0014 30.1 5.7 26 267-292 159-184 (186)
382 2p22_A Suppressor protein STP2 42.1 67 0.0023 28.3 7.1 42 272-313 52-93 (174)
383 3u0c_A Invasin IPAB, 62 kDa an 42.0 1.9E+02 0.0064 25.8 10.0 77 242-318 65-145 (201)
384 3sjb_C Golgi to ER traffic pro 42.0 92 0.0031 25.0 7.2 20 294-313 53-72 (93)
385 4dci_A Uncharacterized protein 42.0 1.1E+02 0.0039 26.3 8.4 17 270-286 44-60 (150)
386 3he4_B Synzip5; heterodimeric 41.9 82 0.0028 21.6 6.6 16 273-288 7-22 (46)
387 2aze_B Transcription factor E2 41.9 44 0.0015 27.0 5.4 30 274-303 11-40 (106)
388 2xzr_A Immunoglobulin-binding 41.5 1.4E+02 0.0047 24.4 8.2 48 267-314 60-107 (114)
389 4dzo_A Mitotic spindle assembl 41.2 50 0.0017 27.4 5.8 26 269-294 4-29 (123)
390 3fx0_A NF-kappa-B essential mo 40.9 19 0.00063 29.2 3.0 57 259-315 28-87 (96)
391 3l4f_A RHO guanine nucleotide 40.4 1.1E+02 0.0038 22.7 7.5 44 274-317 5-48 (61)
392 4b4t_M 26S protease regulatory 40.2 18 0.00063 35.8 3.5 37 274-310 37-73 (434)
393 1hs7_A Syntaxin VAM3; UP-and-D 40.1 43 0.0015 26.9 5.1 44 272-315 36-82 (97)
394 4fla_A Regulation of nuclear P 39.5 1.8E+02 0.0061 24.8 9.6 29 257-285 67-95 (152)
395 4fm3_A Uncharacterized hypothe 39.4 96 0.0033 25.0 7.0 40 267-306 55-94 (98)
396 3n7n_E Monopolin complex subun 39.1 6.3 0.00022 31.8 0.0 32 280-311 40-71 (95)
397 1zhc_A Hypothetical protein HP 39.1 35 0.0012 25.9 4.2 42 272-314 27-68 (76)
398 2aze_A Transcription factor DP 38.9 78 0.0027 27.5 6.9 34 278-311 7-40 (155)
399 2w6b_A RHO guanine nucleotide 38.9 1.1E+02 0.0038 22.3 7.1 41 273-313 14-54 (56)
400 1qvr_A CLPB protein; coiled co 38.9 1.2E+02 0.0042 31.8 9.8 28 258-285 387-417 (854)
401 3v86_A De novo design helix; c 38.8 59 0.002 20.1 4.3 8 306-313 16-23 (27)
402 1x8y_A Lamin A/C; structural p 38.4 1.3E+02 0.0046 23.0 9.2 50 265-314 31-80 (86)
403 3tq7_B Microtubule-associated 38.3 58 0.002 25.4 5.4 47 269-315 8-54 (82)
404 1vcs_A Vesicle transport throu 37.9 1.4E+02 0.0049 23.5 7.9 22 296-317 73-94 (102)
405 3zwh_Q Myosin-9; Ca-binding pr 37.9 12 0.00043 26.2 1.3 22 292-313 8-29 (45)
406 4ati_A MITF, microphthalmia-as 37.8 19 0.00066 29.5 2.7 16 269-284 74-89 (118)
407 2lq4_p Lysophosphatidic acid r 37.5 7.4 0.00025 29.5 0.2 28 287-314 52-79 (80)
408 3aon_A V-type sodium ATPase su 37.4 1.6E+02 0.0056 26.2 9.1 55 271-325 33-87 (217)
409 4h10_A ARYL hydrocarbon recept 37.4 70 0.0024 24.1 5.6 34 248-281 5-38 (73)
410 1tu3_F RAB GTPase binding effe 37.4 84 0.0029 24.4 6.0 59 270-328 13-76 (79)
411 2efr_A General control protein 37.3 2E+02 0.0069 24.8 11.6 9 288-296 103-111 (155)
412 1j1e_C Troponin I, TNI; THIN f 37.1 1.4E+02 0.0046 26.6 8.3 46 278-325 60-105 (180)
413 3p7i_A PHND, subunit of alkylp 36.8 35 0.0012 31.6 4.7 47 242-288 264-310 (321)
414 3ni0_A Bone marrow stromal ant 36.5 1.1E+02 0.0038 24.7 6.9 10 293-302 70-79 (99)
415 3vlc_E Golgi to ER traffic pro 36.2 32 0.0011 27.7 3.7 7 289-295 62-68 (94)
416 3bas_A Myosin heavy chain, str 36.0 1.5E+02 0.0051 22.9 11.6 44 271-314 44-87 (89)
417 3swk_A Vimentin; cytoskeleton, 35.9 1.5E+02 0.0051 22.9 9.9 38 280-317 46-83 (86)
418 3azd_A Short alpha-tropomyosin 35.4 10 0.00036 25.3 0.6 9 276-284 11-19 (37)
419 3swy_A Cyclic nucleotide-gated 34.9 1.2E+02 0.004 21.3 6.2 22 271-292 7-28 (46)
420 2l5g_A GPS2 protein, G protein 34.6 63 0.0022 21.9 4.3 11 288-298 20-30 (38)
421 3mud_A DNA repair protein XRCC 34.5 73 0.0025 28.2 6.1 31 263-293 136-166 (175)
422 1hwt_C Protein (heme activator 34.3 21 0.00073 26.2 2.3 23 266-288 55-77 (81)
423 3ljc_A ATP-dependent protease 34.0 1.7E+02 0.0057 26.1 8.7 26 288-314 224-249 (252)
424 1rtm_1 Mannose-binding protein 33.5 47 0.0016 26.7 4.5 18 278-295 6-23 (149)
425 2djv_A Methionyl-tRNA syntheta 33.5 93 0.0032 23.8 5.9 19 301-319 44-62 (79)
426 3ibp_A Chromosome partition pr 33.3 1.8E+02 0.0063 27.8 9.0 12 272-283 227-238 (302)
427 3gwk_C SAG1039, putative uncha 33.0 93 0.0032 23.2 5.9 28 289-316 54-81 (98)
428 2xnx_M M protein, M1-BC1; cell 33.0 2.3E+02 0.0078 24.4 8.7 32 286-317 69-100 (146)
429 4f3l_B BMAL1B; BHLH, PAS, circ 32.9 25 0.00086 33.5 3.1 59 244-303 5-63 (387)
430 2pms_C Pneumococcal surface pr 32.7 61 0.0021 27.3 5.0 26 271-296 63-88 (125)
431 1gax_A Valrs, valyl-tRNA synth 32.6 71 0.0024 34.3 6.8 30 29-64 398-427 (862)
432 1j1d_B Troponin T, TNT; THIN f 32.5 2E+02 0.0068 23.3 9.5 41 269-316 49-89 (106)
433 3hhm_B NISH2 P85alpha; PI3KCA, 32.4 1.3E+02 0.0043 29.3 8.0 38 280-317 209-246 (373)
434 4i0x_B ESAT-6-like protein MAB 32.2 1.7E+02 0.0058 22.4 8.1 17 268-284 31-47 (103)
435 3iyn_Q Protein IX, PIX, hexon- 32.1 29 0.00099 29.4 2.9 23 274-296 103-125 (140)
436 1flk_A TNF receptor associated 32.1 58 0.002 28.9 5.2 29 274-302 41-69 (228)
437 3pik_A Cation efflux system pr 32.0 3.1E+02 0.01 25.3 11.3 30 266-295 348-377 (446)
438 1cii_A Colicin IA; bacteriocin 31.8 3.7E+02 0.013 27.5 11.3 17 267-283 361-377 (602)
439 2aze_B Transcription factor E2 31.6 1.1E+02 0.0038 24.6 6.3 35 276-310 6-40 (106)
440 3thf_A Protein shroom; coiled- 31.4 1.7E+02 0.0057 26.3 7.9 30 264-293 14-43 (190)
441 4gif_A Polycystic kidney disea 31.3 1.3E+02 0.0046 21.0 5.8 34 269-302 7-40 (45)
442 3aon_A V-type sodium ATPase su 31.3 1.8E+02 0.0062 25.9 8.3 30 272-301 41-70 (217)
443 2efl_A Formin-binding protein 31.3 2.6E+02 0.0089 24.7 9.5 24 288-311 135-158 (305)
444 2p4v_A Transcription elongatio 31.2 1.9E+02 0.0065 24.5 8.1 20 296-315 52-71 (158)
445 3swf_A CGMP-gated cation chann 31.1 93 0.0032 23.9 5.4 28 269-296 7-34 (74)
446 1xaw_A Occludin; coiled-coil, 30.7 2.1E+02 0.0073 24.3 8.2 19 298-316 117-135 (140)
447 1t3j_A Mitofusin 1; coiled coi 30.6 1.8E+02 0.0061 23.3 7.2 16 268-283 53-68 (96)
448 1lwu_A Fibrinogen alpha-1 chai 30.5 1.1E+02 0.0039 25.4 6.2 40 271-310 24-63 (119)
449 4ad8_A DNA repair protein RECN 30.3 1.5E+02 0.0051 29.1 8.3 29 268-296 206-240 (517)
450 2i1j_A Moesin; FERM, coiled-co 30.2 70 0.0024 32.7 6.0 14 269-282 342-355 (575)
451 3gpv_A Transcriptional regulat 30.1 93 0.0032 25.8 5.9 25 291-315 103-127 (148)
452 3pjs_K KCSA, voltage-gated pot 30.0 58 0.002 27.5 4.6 20 270-289 139-158 (166)
453 4g2k_A General control protein 29.8 1.1E+02 0.0037 25.8 6.0 11 271-281 44-54 (125)
454 2lf0_A Uncharacterized protein 29.8 54 0.0018 27.5 4.1 45 268-312 9-58 (123)
455 1lwu_B Fibrinogen beta chain; 29.8 78 0.0027 30.3 5.9 11 286-296 38-48 (323)
456 3pjs_K KCSA, voltage-gated pot 29.5 1E+02 0.0034 25.9 6.0 7 275-281 151-157 (166)
457 3nr7_A DNA-binding protein H-N 29.5 2E+02 0.0069 22.4 7.7 46 270-315 25-70 (86)
458 2fic_A Bridging integrator 1; 29.2 2.1E+02 0.0071 25.1 8.4 16 280-295 194-209 (251)
459 3etw_A Adhesin A; antiparallel 29.1 2.5E+02 0.0084 23.3 8.4 71 244-315 19-89 (119)
460 3l4q_C Phosphatidylinositol 3- 29.0 2.2E+02 0.0076 24.9 8.2 49 269-317 96-144 (170)
461 2js5_A Uncharacterized protein 28.9 1.9E+02 0.0066 22.0 7.8 47 271-317 5-65 (71)
462 1rtm_1 Mannose-binding protein 28.9 63 0.0022 25.9 4.5 15 292-306 6-20 (149)
463 1cxz_B Protein (PKN); protein- 28.8 2.1E+02 0.0072 22.4 7.7 12 305-316 71-82 (86)
464 3gpv_A Transcriptional regulat 28.7 88 0.003 26.0 5.4 33 279-311 98-130 (148)
465 1gk7_A Vimentin; intermediate 28.6 95 0.0033 20.8 4.5 18 276-293 20-37 (39)
466 3mov_A Lamin-B1; LMNB1, B-type 28.5 2.2E+02 0.0074 22.4 8.2 47 267-313 42-88 (95)
467 1lq7_A Alpha3W; three helix bu 28.4 58 0.002 23.9 3.6 13 273-285 6-18 (67)
468 3zbh_A ESXA; unknown function, 28.2 1.3E+02 0.0044 22.1 5.9 48 269-316 30-82 (99)
469 2f1m_A Acriflavine resistance 28.1 1.2E+02 0.004 26.8 6.5 25 290-314 105-129 (277)
470 3ghg_C Fibrinogen gamma chain; 27.8 1.7E+02 0.0058 29.0 8.1 41 277-317 92-132 (411)
471 3mtu_E Head morphogenesis prot 27.6 1.9E+02 0.0065 22.4 6.6 39 278-316 32-70 (77)
472 1m1j_A Fibrinogen alpha subuni 27.5 3.4E+02 0.012 27.5 10.2 19 241-259 57-75 (491)
473 1fmh_B General control protein 27.4 74 0.0025 20.5 3.5 22 295-316 6-27 (33)
474 2a3d_A Protein (de novo three- 27.4 35 0.0012 25.4 2.4 59 256-317 9-71 (73)
475 4a3a_A Amphiphysin; structural 27.4 2.6E+02 0.009 25.1 8.8 54 267-320 36-89 (243)
476 1zhc_A Hypothetical protein HP 27.4 81 0.0028 23.9 4.5 56 265-321 20-75 (76)
477 3n5l_A Binding protein compone 27.3 94 0.0032 28.3 5.9 57 237-293 250-306 (310)
478 4avm_A Bridging integrator 2; 27.2 2.4E+02 0.0082 25.1 8.5 52 269-320 33-84 (237)
479 1r8e_A Multidrug-efflux transp 27.1 1.7E+02 0.0058 25.8 7.4 51 247-299 66-116 (278)
480 3rvy_A ION transport protein; 27.1 13 0.00045 33.6 0.0 42 260-301 240-281 (285)
481 3mtu_E Head morphogenesis prot 27.0 2.2E+02 0.0075 22.0 8.2 50 267-316 28-77 (77)
482 4ioe_A Secreted protein ESXB; 26.9 94 0.0032 22.8 4.8 31 272-302 12-42 (93)
483 2gd5_A Charged multivesicular 26.7 1E+02 0.0035 26.4 5.7 38 279-316 10-47 (179)
484 1urq_A M-tomosyn isoform; tran 26.5 1.2E+02 0.0042 22.2 5.2 36 265-300 28-63 (63)
485 3iyn_Q Protein IX, PIX, hexon- 26.5 60 0.0021 27.5 3.9 38 265-302 94-131 (140)
486 3etw_A Adhesin A; antiparallel 26.5 2.8E+02 0.0094 23.0 12.0 73 245-317 24-105 (119)
487 3pik_A Cation efflux system pr 26.5 3.8E+02 0.013 24.6 10.3 63 255-317 330-392 (446)
488 2efk_A CDC42-interacting prote 26.4 3.4E+02 0.012 24.0 9.4 55 261-315 101-155 (301)
489 3csx_A Putative uncharacterize 26.4 1.7E+02 0.0058 22.8 6.2 50 269-318 15-78 (81)
490 1vcs_A Vesicle transport throu 26.2 2.4E+02 0.0081 22.2 7.5 53 257-310 36-94 (102)
491 2akf_A Coronin-1A; coiled coil 26.0 66 0.0023 20.8 3.1 27 278-304 1-27 (32)
492 1fzc_A Fibrin; blood coagulati 26.0 68 0.0023 25.4 3.9 42 272-313 3-44 (87)
493 1ez3_A Syntaxin-1A; three heli 25.9 1.8E+02 0.0062 22.8 6.7 48 268-315 18-68 (127)
494 1s1c_X RHO-associated, coiled- 25.8 70 0.0024 24.4 3.8 41 285-326 1-45 (71)
495 3a5c_G V-type ATP synthase sub 25.7 2.1E+02 0.0073 25.6 7.8 49 268-316 8-56 (223)
496 4g1a_A AQ-C16C19 peptide; heli 25.6 24 0.00083 22.6 1.0 29 270-298 1-29 (32)
497 2w6b_A RHO guanine nucleotide 25.6 2E+02 0.0067 21.0 7.5 44 273-316 7-50 (56)
498 3umh_A Amyloid beta A4 protein 25.5 1.2E+02 0.0042 27.6 6.1 81 243-325 16-97 (211)
499 2l5g_A GPS2 protein, G protein 25.5 99 0.0034 20.9 4.1 28 286-313 11-38 (38)
500 3vbb_A Seryl-tRNA synthetase, 25.4 1.8E+02 0.0062 29.6 8.0 83 256-340 15-148 (522)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.49 E-value=3.2e-14 Score=105.25 Aligned_cols=53 Identities=40% Similarity=0.553 Sum_probs=49.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
|+++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|++++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999877653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.45 E-value=5.3e-13 Score=100.86 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=53.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|..-
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998887777766643
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.43 E-value=5.5e-13 Score=99.93 Aligned_cols=57 Identities=33% Similarity=0.457 Sum_probs=51.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|+.+|..|+.++..|+.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999877666666654
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.38 E-value=6e-13 Score=100.13 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=50.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
|+++|+.+||+||++||.||++++++|+.+|+.|+.+|..|..+|..|+.++..|+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999887776666554
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.33 E-value=2e-12 Score=98.01 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=44.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 249 RQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 249 R~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566999999999999999999999999999999999999988877653
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.26 E-value=1.3e-11 Score=93.37 Aligned_cols=57 Identities=30% Similarity=0.478 Sum_probs=45.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
.|+++++++||.||+|||.||++++++|+.+++.|+.+|..|+.+|..|+.|+..|+
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999999977766655554
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.22 E-value=3e-11 Score=93.44 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=56.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 250 QKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.||+.+||.|+|.+|.||++||.+||.+|..|+.++..|..++..|+.++..|..||..|+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999888888888888887764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.01 E-value=9e-10 Score=88.47 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
.+...|+.+|.+||+|||.++++...+++.+++.|+.||..|+.+|..|+.++..|+.-...|
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 346777899999999999999999999999999999999999999977655555554444333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.95 E-value=2.1e-09 Score=84.75 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+...|+.+|.+||+|||.++++...+++.++..|+.||..|+.+|..|+.++..|+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999977766655554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.85 E-value=7.4e-11 Score=98.03 Aligned_cols=62 Identities=26% Similarity=0.350 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 241 IQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 241 ~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
.++..++|..||+++||.+|+.||.||.+++++||.++..|..+.+.|..++..|+.+++.|
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999777666665555555544444333333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.61 E-value=2.5e-07 Score=74.66 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 243 DERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-.++|..||..+||.+|+-||.||.+++++||.++..|..+. +.|+.++..+..|...++.++..|.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~-------~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQV-------EQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477889999999999999999999999988887666665554 4555555666677777777777665
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.40 E-value=0.0003 Score=49.12 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
|+|+.+||.+++.|+..|.+|..++..|+.|+..|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999999977755555444
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=97.05 E-value=0.00025 Score=57.06 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQA 276 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~ 276 (340)
..+|..||+.+||.+|++||+||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45678899999999999999999999888763
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.72 E-value=0.0059 Score=44.30 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.++|-++|+.|+.||..||.|++.=..++.+|+.|-.-+++-+..|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578999999999999999999999999999999999999999988864
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.48 E-value=0.011 Score=46.67 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
.+.-|+.+++.|+.+|..|..++..++...+.|..||.+|+++....+ +.|+.|-
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LL 75 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344555666666666666666666666555556666666666665554 4444443
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=96.32 E-value=0.012 Score=48.12 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRD-------ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~-------el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++-+||.+++.|+.||..|+. +|..|..+++.|+.||..|+.+-+.-
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788899999888888877 78888888888888888888775544
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.10 E-value=0.026 Score=48.37 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|+.++..|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666666666666666666666655
No 18
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.99 E-value=0.032 Score=41.18 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
+++-+||.++|+||.|=++.++-...- ...-..||.+|+.-|.+++..-++..+..
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~v---------------------aaaks~en~rlr~l~kqmcpsldvdsiip 59 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREV---------------------AAAKSSENDRLRLLLKQMCPSLDVDSIIP 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHCTTCCHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhcccchHHHHHHHHhCCcccccccCC
Confidence 445679999999999877655544322 23345677788888888876655554433
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.92 E-value=0.031 Score=41.85 Aligned_cols=41 Identities=34% Similarity=0.506 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+..-|.+|..|-.-|..|.+|+..|+.+++.|.+||..|+.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34558899999999999999999999999999999999973
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.88 E-value=0.03 Score=44.27 Aligned_cols=52 Identities=33% Similarity=0.440 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
=|-++++|+.+-..|..+++.++.....|..++++|+.|...+..+|..|-|
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888888764
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=95.68 E-value=0.046 Score=38.27 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.+.+||.+|..|+.||+.|+.+.-.-+.-+..|+.|...|+.+|+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999888888888999999999998875
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.42 E-value=0.044 Score=44.91 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 295 LSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 295 L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.++++++|+.|+..|+.+|..|..
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777654
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.26 E-value=0.15 Score=51.11 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++++.+.|+.|..+|+.+++..++....|+.|+..++++|+++.
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555543
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.25 E-value=0.019 Score=38.15 Aligned_cols=27 Identities=41% Similarity=0.622 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.+||.+|+.|-.+|..|..++.+|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999988865
No 25
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=95.25 E-value=0.071 Score=38.24 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++++..|+.-|..|..++..|+..|..++.|+.+|+.-|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999988765
No 26
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=95.22 E-value=0.026 Score=37.68 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+++.+||.+|+.|-.+|.+|..++.+|+.-
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 357889999999999999999998888653
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=95.02 E-value=0.071 Score=39.78 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
..+.+.|+.+...|..+...|+.++..|+.|+..|+.-|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777788888888888888888888888888776654
No 28
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.95 E-value=0.054 Score=36.54 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+++.+||.+|+.|-.+|..|..++.+|++-+.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 35788999999999999999999988876543
No 29
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=94.95 E-value=0.12 Score=40.98 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.||..|..+|..|++++..|+.+|..|++-....
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998776654
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.31 Score=42.57 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..+.+..++..+.+..-++.=.....++.+-..-++.|..|...|+-++..+..+...|+.||..|-+++.+-.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444445555666667788899999999999999999999999999988888766543
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.86 E-value=0.16 Score=43.41 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+.+++++.++..|..++..++.+++.++++++.|+.++..|..++.+|.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666654
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.80 E-value=0.14 Score=51.31 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.2
Q ss_pred hhhhhhhhcCCC
Q 019499 320 EAVANLEQSNPT 331 (340)
Q Consensus 320 ~~~~~L~~~~~~ 331 (340)
..+..|++..+.
T Consensus 572 ~~~~~l~~~~~~ 583 (597)
T 3oja_B 572 QKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcC
Confidence 444555554443
No 33
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=94.77 E-value=0.072 Score=39.26 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|+++..|+..|..|..++..|+..|...+.|+.+|..-|++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999887765
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.75 E-value=0.065 Score=44.60 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..|+.++..|+..|..|...|..|...+..|+...+....-|.++
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 334444444444444444444444444444444444444433333
No 35
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.72 E-value=0.047 Score=36.84 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
++.+||.+|+.|..+|..|..++.+|++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5678999999999999999999988876554
No 36
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=94.65 E-value=0.057 Score=42.49 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888888888888877777777777766654
No 37
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=94.53 E-value=0.33 Score=39.01 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+|.|++-+-|... -+...+ .+...|..++..|..+.+.|..||..+..++..+.
T Consensus 29 ~RRtlKNRgyAq~--CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 29 KRRTLKNRGYAQS--CRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 233333 34466777788888888888888888888777664
No 38
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.52 E-value=0.05 Score=36.22 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+++.+||.+|+.|-.+|..|..++.+|+.-
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357889999999999999999999888653
No 39
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=94.29 E-value=0.14 Score=40.22 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.||..|..+|..+++++..|+.||..|++-+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999998887766654
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.13 E-value=0.29 Score=35.90 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
.+..|+.+...|..+...|+.++..|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666666666666666554
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=94.10 E-value=0.13 Score=40.12 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+++++||.++.-++.-..+|...|...+.++..|+.+.+.|..+|..+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788999999999999999999999999999999999999998888763
No 42
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=94.06 E-value=0.073 Score=35.27 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+.+||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5789999999999999999998888653
No 43
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=94.02 E-value=0.21 Score=36.13 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
+.+|+.++..|...|..|..-+...+.++..|+.|...|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666655555555555554443
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.96 E-value=0.18 Score=35.10 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+..|+.+-.+|..++..|.+.+..|..||..||.-|.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4567777777777777777777777777777776553
No 45
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.95 E-value=0.22 Score=36.11 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.++..|+.++..|..++..|.+.+...+.|...|+++|.+|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788888888888888888888888888888888888774
No 46
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=93.91 E-value=0.0052 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQA 269 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~ 269 (340)
..+|..||+-+||++|++||+||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5567889999999999999999964
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.83 E-value=0.14 Score=46.17 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 303 TSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 303 ~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
..|+..|+.....|. ..|++|++.||+
T Consensus 94 q~el~~l~~~~~~l~--~~ireLEq~NDd 120 (189)
T 2v71_A 94 EDDLSQTRAIKEQLH--KYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhH
Confidence 333334444444444 556666666554
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=93.80 E-value=0.29 Score=41.08 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+|+.|+.|+..|..+|..+..+++.|+.+|..|..+|..-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 335777777777777777777777888888888777776553
No 49
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.80 E-value=0.24 Score=38.31 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++..+++.++.+|..|..+|..|+..++.-+.+-..++.+|..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777766666666666554
No 50
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.76 E-value=0.58 Score=34.65 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+..|+.+...|..+...|+.++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555544443
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.75 E-value=0.057 Score=50.70 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
..+.+|+.++..|...|..|..+++.+++++..|+.|+..|+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666555555555555554443
No 52
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=93.71 E-value=0.2 Score=39.72 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.||..|..+|..+++++..|+.||..|++-...
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888888766554
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.70 E-value=0.076 Score=35.45 Aligned_cols=28 Identities=14% Similarity=0.461 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
++.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678999999999999999999888865
No 54
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=93.67 E-value=0.078 Score=35.39 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
++.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999999888865
No 55
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=93.66 E-value=0.18 Score=46.02 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
||..|..+|..|++++..|+.||..|++-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555543
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.43 E-value=0.55 Score=37.39 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
++++|+.+-..|+.++..|..++..|+.-+.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 57
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=93.34 E-value=0.12 Score=34.88 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
-.||..|..+|+.-.+++..|+.||..|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 358999999999999999999999998874
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=93.33 E-value=0.12 Score=34.30 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.+||.+|+.|-.+|..|..++.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999888888765
No 59
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.30 E-value=0.15 Score=37.03 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..++.|+.||.+|+.++ +.|..++..|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~-------~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY-------EAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 34555555555555555 444555555555554
No 60
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=93.28 E-value=0.098 Score=34.87 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
++.+||.+|+.|-.+|..|..++.+|++-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999888653
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=93.17 E-value=0.14 Score=37.12 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L 295 (340)
.|..+++.|+.++..|..++..|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.15 E-value=0.72 Score=35.97 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+++|+.+-..|+.++..|..++..|
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 63
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=93.08 E-value=0.38 Score=39.54 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
..++++++.+..|+.|+.+...++..++..+..|..+...|+.+|.+
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666554
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=92.82 E-value=0.41 Score=36.92 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
...|..++..|+.+++.|+.+|..|+.+|..|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777888888888899999999888765
No 65
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=92.64 E-value=0.49 Score=36.23 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
+.+|+.....|..||..|+.+|..|..++..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555444444443
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.48 E-value=0.71 Score=50.97 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHh
Q 019499 302 LTSENNSIKEDLSRL 316 (340)
Q Consensus 302 L~~EN~~Lk~eL~~L 316 (340)
|+.||..|+.++.+|
T Consensus 1028 L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=91.61 E-value=0.18 Score=47.30 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCC
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNP 330 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~ 330 (340)
+.+++.|+.++..|..++..|.+++..|+.|+..|+++|.+|.. +..+.++...++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~d 109 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHD 109 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 67889999999999999999999999999999999999999976 334444444443
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=91.61 E-value=2 Score=33.83 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 256 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 256 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
|=.||-.+-.|-|+ .+.+++...+..|..+.++|.....++..|..|...|+.+|..|+.
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444444442 4455667788888888889989999999999999999999988764
No 69
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=91.60 E-value=0.25 Score=31.99 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
++..||.+|...+.||-+|.+++..|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 466788888888899988888888887665
No 70
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.50 E-value=1.6 Score=34.30 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
-+-+|..+++.|+.|+..|+-+++.+..+++.|....+.+-..|......
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34668888888888888888888888888888877777776666554433
No 71
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.22 E-value=0.88 Score=33.91 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
-......|..++..|+.++..|..|+..|+++|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666555555555555555554
No 72
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.20 E-value=1.6 Score=32.06 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
....|..++..|..++..|..+...|+.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.64 Score=45.82 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.++++++|+++++.|+.++..|..++..|++++...+.+.+.|..+|.+|.|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777777778888888888888888888888888888888888888876
No 74
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=91.16 E-value=1 Score=35.43 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
...|..+...|..+++.|+.+|..|+.+|..|.+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777778888888899999999999998875
No 75
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.09 E-value=0.96 Score=34.93 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el 292 (340)
.+++|+.++..++.++..|+.++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 76
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.08 E-value=2.3 Score=35.30 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 256 NRESARRSRLRKQAECEELQARVETLSN---ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 256 NRESARRSR~RKq~~leeLE~rv~~Le~---EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|=.+|.+.=..|+..|++|++++..++. .+.-|+.++...+..+..-+..-..|..+...|
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L 95 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYL 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHH
Confidence 3345555556677777777777777666 455566666666665554444333333333333
No 77
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.83 E-value=0.77 Score=35.67 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
++|+.|+..|+....-+..-|+.|...+.....+...|+.+|..|. +.+..+...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Confidence 5788999999999999999999999999999999999999999987 666666654
No 78
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=90.82 E-value=0.71 Score=45.76 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+++++|+++++.|+.++.++..++..+++++.+...+.+.|..+|.+|.|
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356777788888888888888888888888888888888888888888876
No 79
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.65 E-value=1.7 Score=31.22 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555544
No 80
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.57 E-value=5.3 Score=32.05 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRN 287 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~ 287 (340)
.++-+++..|..++..|+.+...
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.32 E-value=0.9 Score=50.16 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
+++.++..|+.|+.+|++++..+.++.+.|+.++..|+
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555554444444444
No 82
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.23 E-value=1.3 Score=35.55 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+++.+|+.+-..|..+...|..+...|..
T Consensus 25 ~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 25 QELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444433
No 83
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=90.13 E-value=0.49 Score=31.64 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++.++...+++++.|+.+|..|.+++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34455555555566666666666666554
No 84
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=90.06 E-value=0.44 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
++.+||.+|+.|-.++..|..++.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888999888888888888877764
No 85
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=89.99 E-value=0.5 Score=36.90 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+|-.||+.|..|+..|+.++..+++-..+++..+..|.++|.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555554444444444444444443
No 86
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.63 E-value=4.3 Score=35.92 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+.-=+.-|+.|.+-.+.+.+|+.++..|+.|...++..+ ..+..+|..|.++|..|.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~-------~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL-------EKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666666666666555554444 344444444444444443
No 87
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=89.46 E-value=3.2 Score=33.54 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 254 QSNRESARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 254 ~~NRESARRSR~RKq~~leeLE~rv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
..|-.+|-..=..|+..|++|.+++..++ ..+.-|+.++...+..+..-++.-.+|..+...|. ..++.|...+
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~--~ql~~lq~q~ 84 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ--EQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHH
Confidence 34556777777889999999998888888 56667888888888888777766666666666665 5555555544
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=89.37 E-value=3.1 Score=34.75 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
....-+.++.+|+.+|..|+.|...-+.....+..+|+.|+.|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777666666555555555555555544
No 89
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=89.35 E-value=2.8 Score=33.20 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|..-+++++.|+.+..+++..|..|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444454444444
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.01 E-value=7.7 Score=31.08 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.+.|...-..-+..+..++.+...++.+...|..++..|..+++.+.......+.+
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333444444444444555555555555555544444444443333333
No 91
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=88.84 E-value=0.49 Score=36.47 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
||..|+.++..|+.+...|+.++..|+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333333
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.71 E-value=2.1 Score=34.74 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 293 QRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..-+.+...++..|..|+++|.+.
T Consensus 72 a~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 72 ADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334556667777788888877653
No 93
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=88.64 E-value=1.9 Score=33.23 Aligned_cols=45 Identities=24% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-+.++..|+....--.+-.++|..++-.|--||.-|.++|..|+
T Consensus 29 ~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 29 SKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 334445555554444445567788888899999999999998875
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=88.36 E-value=0.79 Score=35.43 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...|..|..++..+..++..|+.+|-+++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444445555555555555443
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.35 E-value=2.5 Score=32.57 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++.++.+++..+..+..+..+|..|++.+..|+.+...+.++|..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 96
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=88.18 E-value=0.87 Score=35.36 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.|+.+...|..+++.|+.||..|+.+|..
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444445555555555555543
No 97
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=88.07 E-value=6.4 Score=30.74 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...+++++.|.+--+.|..=-..|..-|.+|..+...|......|+.+.+.|.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666777777777777777777777777777765
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.98 E-value=1.1 Score=46.09 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHhH
Q 019499 243 DERELKRQKRKQSNR 257 (340)
Q Consensus 243 DE~e~KR~rRk~~NR 257 (340)
-|++++....+++|+
T Consensus 58 qErDltkrINELKnq 72 (562)
T 3ghg_A 58 VNQDFTNRINKLKNS 72 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHH
Confidence 344455444444443
No 99
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.97 E-value=7.6 Score=29.76 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+.|...-..-...+.+.+.+...++.+...|..+|..|..+++.+.........+|..-
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556667777777777888888888888888888887777777777776654
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.80 E-value=1.5 Score=45.07 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.+.++.++|++++..|+.+...-...|..|+..++.++.+.++|..
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666666666555544445555555555555555555543
No 101
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=87.78 E-value=0.24 Score=45.98 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.++.+.|++||.+|+.++. +++.|+.||.+|++.|..
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 3334444444444444333 346788899999887664
No 102
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.71 E-value=1.1 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
...|++++..|++++..|+-|...|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554
No 103
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.49 E-value=4.6 Score=39.32 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 298 ECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~ 315 (340)
++++|+.|...|..+|+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 104
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=87.33 E-value=1.6 Score=31.65 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+..|..++..|..||..|+.+|..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666654
No 105
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.32 E-value=6.1 Score=32.80 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+.+.++..|......|..+|..|...++.....|..|...-..+.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555444443
No 106
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.27 E-value=9.8 Score=30.28 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNE 284 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~E 284 (340)
+-.++..|..++..|+.+
T Consensus 42 ~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 107
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.16 E-value=12 Score=31.30 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.|+.+...-.....+|+.||..|.++++.+..|..+|+.+...+.
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3444433333444667777777777777777777777777766553
No 108
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=87.05 E-value=3.4 Score=29.88 Aligned_cols=44 Identities=2% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
.+++|..+|..|..+...|..++..|+.+++..+.|-.+--.+|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777777777777777777766666666665555554444
No 109
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.88 E-value=12 Score=30.93 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+|..++..|..|+..++.++..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 110
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.88 E-value=4.1 Score=32.06 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=37.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 253 KQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 253 k~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
-++.+.+-++-=.+=+.....++.++...+..|.+|..++..|+++++.|+.+
T Consensus 22 EIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 22 EVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555444455556667778888888889999988888888888887654
No 111
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.81 E-value=3.9 Score=36.18 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
-|+||++ .+|...+..++..+.+|+..+..|......|..++..|..+|..
T Consensus 30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 55555566666666666666666666666666666555555543
No 112
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.78 E-value=1.1 Score=44.65 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+|..+++.|+.+...|..+.+.|+++...|+.|...|++++..++.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555666666666666666666666666677777777777777765
No 113
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=86.69 E-value=2 Score=33.60 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRL------SEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L------~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|.+++.|+.+++.|+.+...|..+|..- -.++..|..+...|..+|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888887776421 133444455555555554443
No 114
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=86.68 E-value=7.2 Score=30.02 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=39.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 250 QKRKQSNRESARRSRLRKQAECEELQARVETL---SNENRNLR---DELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 250 ~rRk~~NRESARRSR~RKq~~leeLE~rv~~L---e~EN~~Lr---~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..|+.....+-|+.|.+=...+.+|..-|-.. .....-|. .=|..|+.+.+.|..|+..|+.++....
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555666667766677777777644321 00111122 2345566777777788888887777653
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=86.55 E-value=2.2 Score=34.98 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+++-|..+++.++....+|+.++....++++.++..+..|+.++..++.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999999999999999999998874
No 116
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=86.54 E-value=4.2 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+..|+..+..+..+...++.++..++..+..+..+....+..|..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666553
No 117
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.53 E-value=3.2 Score=33.14 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
+.|...-..-+..+..++.+...++.+...|..++..|..+++.+......+
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444433333333
No 118
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.46 E-value=1.8 Score=47.92 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.7
Q ss_pred CCcccc
Q 019499 59 HPYLWG 64 (340)
Q Consensus 59 hPYmWg 64 (340)
||++..
T Consensus 565 ~~~~~~ 570 (1184)
T 1i84_S 565 HAKFQK 570 (1184)
T ss_dssp CTTEEE
T ss_pred CCCccC
Confidence 444443
No 119
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.32 E-value=1.2 Score=40.11 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
|..|..||..|..+++....+++.|+.+...|+.+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444433333333
No 120
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.04 E-value=9.1 Score=28.68 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.-..+||+-|-..=.. .+++|...+..-..+....+.+|..|+..++.|+.|...||
T Consensus 20 ~ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344565544432222 24566666666666666666677777666666666666654
No 121
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.60 E-value=6.1 Score=34.42 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
++.|..++..|+-++..|..++..|++|+..|.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 122
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=85.47 E-value=4.6 Score=31.02 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++.++..+..|+.+...++.++.....+++.|..-.-.|-.+|...
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666676666666666666553
No 123
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.42 E-value=8.7 Score=35.05 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~ 294 (340)
.|+.+++.++.++..|..++..
T Consensus 94 aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 124
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.36 E-value=4.6 Score=31.71 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
..=+..+++|+.+|..|+..++++.-+|+.|++....+-.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554444444433
No 125
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=85.28 E-value=0.5 Score=36.77 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcC
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSN 329 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~ 329 (340)
|.+.|+.+|..|.+++.+|+.||..||. +..++.|..|...+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 4456677777777778888888888775 44566666665555
No 126
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=85.17 E-value=1.7 Score=34.18 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+||..|+.+...|..+...|+.+...|+.+++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333333
No 127
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=85.16 E-value=1.6 Score=39.96 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQ 327 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~ 327 (340)
.|+.+++.|+.++.+|+.++-++..+++-++....+=++++........+.+|..
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLp 117 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLP 117 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444444444444444444444444344444333
No 128
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.05 E-value=4.2 Score=31.31 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|-
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3445555555555555566666666666666666666777777666653
No 129
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.98 E-value=13 Score=29.59 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=26.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 251 KRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 251 rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
....++|+....-....+++.+.|..+=..+-.+-..++.++-.+..+...|.++..-...+|.+|
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444443333333333333333333333333333344444444444444444444444443
No 130
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.94 E-value=4.2 Score=31.69 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 274 LQARVETLSNENRNLRDEL-------QRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el-------~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-.+|+.|-.||.+|.+-- +.|-.+.+.|..|+..|+.+|..++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455556666665554321 2233345555555555555555554
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.70 E-value=4.8 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+.+...|.+++.|+.++.+|+.+++....-...|-.+|..|...+...
T Consensus 10 ~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 10 LERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 3445555667777888888888888777777777777777777655544
No 132
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=84.64 E-value=0.89 Score=33.13 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.++++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556666666666555555543
No 133
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.46 E-value=9.8 Score=37.11 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++|.+.+.++++....+.+++.|+++.+.|+.++..|..++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3333333344444444444444444444444444444444433
No 134
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.46 E-value=4.3 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKL 302 (340)
Q Consensus 288 Lr~el~~L~~e~~~L 302 (340)
|.+-+..|+.++..|
T Consensus 29 lekiianlrdeiarl 43 (52)
T 3he5_B 29 LEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 135
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.40 E-value=16 Score=32.76 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDEL 292 (340)
Q Consensus 280 ~Le~EN~~Lr~el 292 (340)
.|+..+..|+..|
T Consensus 99 ~l~~~~~~l~~~i 111 (189)
T 2v71_A 99 QTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 136
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=84.28 E-value=10 Score=29.60 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-|.|=++.+...+.+++.|..-..+|+.=-..|..-+..|..|-..|...|..|.
T Consensus 12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777778877777777777777777888888888877777776
No 137
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.24 E-value=1.8 Score=42.59 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++++++|+++++.|+.++.+|.+++...+.....|.++...|+..|+-+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3445666777777777777777777666666666777777766655443
No 138
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.16 E-value=7.3 Score=35.56 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
+++|+.++..|+.+...+..++..++.++..++.+...++
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 139
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.01 E-value=4.7 Score=31.53 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..|+.+++.-+.+-..++.++..+.+.+..-..|...|+..|.+|
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 4455555555555555566666666666666666666666666554
No 140
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=83.79 E-value=7.5 Score=30.76 Aligned_cols=10 Identities=50% Similarity=0.810 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019499 291 ELQRLSEECE 300 (340)
Q Consensus 291 el~~L~~e~~ 300 (340)
+|..|+++++
T Consensus 59 ei~~le~~i~ 68 (84)
T 1gmj_A 59 EIERLQKEIE 68 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 141
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=83.51 E-value=2.4 Score=40.88 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+++..||..|...+.+...|+..+..++.+++.|+.+...|+.+|...
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~ 59 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRP 59 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355666777777777777777777777777777777777777766543
No 142
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.49 E-value=15 Score=30.45 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|..++..|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 56666666666666555555555556666666666666666655543
No 143
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.49 E-value=4.8 Score=28.48 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+||++|+.|+.-...|..++.+|-.++.. -...|+.+|..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57788888887777777777776555443 3455666666654
No 144
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=83.43 E-value=12 Score=29.05 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|-...++.++..+..|+.+...++.++.....+++.|..=.-.|-.+|...+
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3345677788888888888888888888888888888887777877776654
No 145
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=83.43 E-value=3.1 Score=30.40 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+++..+..|+.+...++.++.....+++.|..-.-.|-.+|...+
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567777788888888888888888888888777777777776543
No 146
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=83.20 E-value=1.6 Score=40.52 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQA-------RVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~-------rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
.+|.+|.++-=.==.|+|+-|...++++-. +++.|+.||.+|+.+|+.|+.+..+.+.+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 357777655433334455555555555444 44444444444444444444444443333
No 147
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=83.06 E-value=6.6 Score=31.19 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+.+...|+.+|..+..+...|..|...|.+.+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 148
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=82.51 E-value=0.53 Score=43.70 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+.+..+.+++..+++.|++++..++.++..|+.++.
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444544444444444444444444433
No 149
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.43 E-value=8.4 Score=32.13 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+-+..|..|+..+..|..++..-+.+.+....||..|+.++..+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678888888899999999988888999999999999999874
No 150
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.19 E-value=1.8 Score=35.37 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
.+..|..+|+.|+.||..|+++++.|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444433
No 151
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.17 E-value=12 Score=36.47 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+++....+++.|++||+.|+.++..+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33333333334444444333333333
No 152
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.10 E-value=16 Score=28.49 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-.....+|+.+...|..+...|..++..+.+.|..|......|..+|..|.
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456788888888888888888888888899999988888888888875
No 153
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=81.79 E-value=5.9 Score=27.51 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++..|..+++.|+.....|+.+|..|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556666666666666666554
No 154
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.67 E-value=8.9 Score=38.90 Aligned_cols=17 Identities=12% Similarity=0.306 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNE 284 (340)
Q Consensus 268 q~~leeLE~rv~~Le~E 284 (340)
+.++++|+.+...+..+
T Consensus 83 ~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEA 99 (501)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 155
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=81.45 E-value=1.2 Score=27.88 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.|+..|..|++++..|.-++.
T Consensus 4 rlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 344445545444444443333
No 156
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=81.34 E-value=11 Score=31.23 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|+.++..|+.....+..++..|..+...|..+...|+.+|..+
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 157
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=81.25 E-value=2.2 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+||.+|+.+++.|+.++..|+.++...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777766544
No 158
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.20 E-value=7 Score=31.92 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
..+.+|+.+|+.|+.||..|+.+.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 159
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.80 E-value=3.7 Score=31.74 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
.+||..|+.+...|..|+..|+.++..|+.++++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777777777777777777776666554
No 160
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.68 E-value=5.5 Score=28.09 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
++..|+..|-+|...-..|.+-+..|+.|..+|..+
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 344444555555444445554455555554444443
No 161
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=80.67 E-value=2.4 Score=28.27 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
+.+|...++.|+.|++++..|+.+...
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555544443
No 162
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=80.63 E-value=4.7 Score=33.30 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVE-------------TLSN---ENRNLRDELQRLSEE---CEKLTSENNS 308 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~-------------~Le~---EN~~Lr~el~~L~~e---~~~L~~EN~~ 308 (340)
|+..|+...-.+-|+.|.+=...+.+|..-|- .|.. -...|+.++..|+++ ...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556677777776777777765333 3322 123455555555543 4567788888
Q ss_pred HHHHHHHhc
Q 019499 309 IKEDLSRLC 317 (340)
Q Consensus 309 Lk~eL~~L~ 317 (340)
|..+|..|.
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888877765
No 163
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=80.60 E-value=6.7 Score=39.77 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 264 RLRKQAECEELQARVETLSNENRN----------LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 264 R~RKq~~leeLE~rv~~Le~EN~~----------Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|+.-+.++++|+.+...+..+... |..++..|++++..|+.+...|.++|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544433 4444444444444444444444444443
No 164
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=80.43 E-value=22 Score=28.99 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 251 KRKQSNRESARRSRLRKQAECEEL---QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 251 rRk~~NRESARRSR~RKq~~leeL---E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|..+|+.|-+.--.+=.+....| ..|+...+.+..+=.+|+.++..+.+.|.+.|-.|..++..|
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~ 102 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666553322222222222 233344444444444445555555555555555444444433
No 165
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.06 E-value=8.4 Score=38.45 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|..++..|++++..|+.+...|.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 166
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.98 E-value=10 Score=29.97 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-+.|..+++.++.|...|+.++..| ..|..+-+.|..-|..|.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L----~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555555444 233344455555555554
No 167
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.67 E-value=4.9 Score=36.21 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+..|..++..|..++.....+++.|+++++.|+.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444433
No 168
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=79.63 E-value=0.046 Score=43.89 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQA 269 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~ 269 (340)
..++..||+-+||.+|++||+||..
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHhhhhHHHHHHcchhhcc
Confidence 4567788999999999999999853
No 169
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=79.14 E-value=20 Score=27.65 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...|-...+..++..+..|+.+...++.++.....+++.|..-.-.|-.+|...+
T Consensus 20 ~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 20 MEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344455678888889999999999999999999999988888888888877654
No 170
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=79.13 E-value=4.8 Score=31.18 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++||.+|+.|+.-...|+.++.+|-.++... ...|+.+|..|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4577777777777777777777765555432 334444444443
No 171
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=78.97 E-value=3.9 Score=26.45 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
++..|..+|..|+..|-.-++++..|+.+|
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355677788888888888777777776655
No 172
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.74 E-value=1.3 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+.|+=||..|.+++..|++++..|+
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666665555543
No 173
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=78.62 E-value=8.1 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+++.|..+...|..++..|+.+...|+.+...-+++...
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777666666544
No 174
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=78.32 E-value=6.3 Score=30.30 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENN---SIKEDLSR 315 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~---~Lk~eL~~ 315 (340)
|...|..|..|+.+|..++..+.+++..++.|-. .|++.|+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek 46 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777776666553322 34444444
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=77.95 E-value=16 Score=32.21 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 291 ELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk 310 (340)
+|+.|.+++..|+.+...++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 176
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=77.89 E-value=23 Score=34.88 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+|+.++..|++++..|+.+...|.++|..+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555443
No 177
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=77.77 E-value=2.9 Score=39.83 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+++.|+.+|+.|+++++.|+++.+.+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444444444443
No 178
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.70 E-value=12 Score=29.39 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
-+++.+|.-+|..|+.|-.+...++..-+.++..|..+.
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345666666666666665555544444444444444333
No 179
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=77.13 E-value=6.1 Score=25.52 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L 295 (340)
|.+++..|+.|...|+-++..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 180
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=77.01 E-value=1.9 Score=33.15 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++|.+++..++..+..|..-+..-...+..|..+|.-||++|..+.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555556666666666666554
No 181
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=76.94 E-value=7.7 Score=29.77 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSE-NNSIKEDLSR 315 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E-N~~Lk~eL~~ 315 (340)
+|...|..|..|+.+|..++..+.+++..+..| ...|++.|..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek 46 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888887766533 3334444444
No 182
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=76.94 E-value=20 Score=26.76 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+.+++.|......-...+...+.++..|+.....|..+|..|.|
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346777777777777777778888888888888888888877754
No 183
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=76.94 E-value=5 Score=26.68 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.+...|+.|..+|++-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344555555555556666666665544
No 184
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=76.75 E-value=6.6 Score=35.64 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
..|..+++.|+.++..|..+++.
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 185
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.38 E-value=30 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.++.+...|++.++.+.-....|+.+...|+++|.-|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444445555666666655544
No 186
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=76.33 E-value=21 Score=28.45 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+++.++..+..|+.+...++.++.....+++.|..-.-.|..+|...+
T Consensus 36 ~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 36 AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888888888777777777776543
No 187
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.29 E-value=5.5 Score=39.38 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++|+++++.++.++..|.+++.....+..+|.++...|+..|+-
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 355555566666666666666655555555566666666554433
No 188
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=76.04 E-value=1 Score=43.52 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++|..||.+|..++++...|+..|+.|+.+++.|+.....|+.+|...
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~ 51 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 51 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567778888888888888888888888888888888877787776653
No 189
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=75.99 E-value=2.5 Score=26.97 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQR 294 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~ 294 (340)
.-+..|+.||.+|+.+++.
T Consensus 6 allasleaenkqlkakvee 24 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 190
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=75.88 E-value=17 Score=27.85 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+-|...+..+..||.++..++.+......+...|-.-...|..|...-+.-|+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999999888999998888999999988876654
No 191
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.60 E-value=23 Score=35.94 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+|..++..|++++..|+.+...|.++|.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 192
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=75.46 E-value=0.58 Score=38.65 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 284 ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 284 EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+...|..++..|..+.+.|..||..|+.++..+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555554444
No 193
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=75.32 E-value=22 Score=26.22 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|..-+.+|+.++..++.-...|..+++.+.-+++.+..++..=+..|..|.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le 54 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344567777777777776666666777766666666555444444455444
No 194
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=75.32 E-value=6.7 Score=35.13 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
+.++-|=.++..|+.+|..|++++++|+.+.++.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554444433
No 195
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=74.82 E-value=4.2 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 019499 295 LSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 295 L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|..-+..|+.||.+|++++++|-
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888888887763
No 196
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=74.62 E-value=4.4 Score=30.82 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
..|.+.+.+||..+..-..++.+|+.++.+++.-+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888888888888888888887776665433
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.58 E-value=5.3 Score=39.60 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.++..|+++++.|+.++..|+.++..|++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788889999999999999999999999999999888765
No 198
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.48 E-value=35 Score=28.14 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..+..++..+..|+.+...++.++.....+++.|..=.-.|..+|...
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777777777777666666666666554
No 199
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.26 E-value=6.9 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLRKQAECEELQARVETL 281 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~L 281 (340)
..-|+.|.+=...+++|..-|-.+
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~ 41 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSL 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCC
Confidence 334444444455566666555433
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.15 E-value=13 Score=45.74 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++..+|.++|..|+++++.+..|...|+.+++.
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 201
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=74.13 E-value=7.2 Score=37.58 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+..|+.+++.++....+|..+|..|+
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444344433333333
No 202
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=74.03 E-value=13 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+++.++..++..|..+...|+..++.|.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555444443
No 203
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.64 E-value=17 Score=36.03 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++.++||+++..|+.....-...|..|+.-++.++.+..+|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777554433466667666666666666666555
No 204
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.49 E-value=2.3 Score=33.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
++.|..++..|...|.+|..|...|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 205
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.46 E-value=38 Score=32.71 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-.++|+.|+.++..|..+...+++++++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334566666666666666666666666553
No 206
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.46 E-value=12 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|+.....|..++..|..++..+..+...|+.+|..+.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666654
No 207
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.02 E-value=8.2 Score=25.97 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+|..+++.|..+...|+.|-.+|+..|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555555555555666666665544
No 208
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.90 E-value=3.7 Score=34.04 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
.++.+|...|..|+.|...|+.....|.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444444443333
No 209
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=72.86 E-value=10 Score=27.87 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
-..|..+|..|+..|.+..+||.+|..
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888743
No 210
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=72.86 E-value=17 Score=33.11 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhhhcCCC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG--PEAVANLEQSNPT 331 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g--~~~~~~L~~~~~~ 331 (340)
++-+.|..+|+.|+.|+..|+.++..|++ |..+-.-|..-|.+|.+ ++.+-.|..+.++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~~~~~~~~e~~~~~~~d 175 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLNGEPLDNFESLDNQEFD 175 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcccccCchhhhcc
Confidence 44456666666666666666666665533 33444455555555544 3334444333333
No 211
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.74 E-value=38 Score=27.79 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..++..+..|+.+...++.++.....+++.|..-.-.|..+|...
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666665555565555544
No 212
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=72.69 E-value=1.9 Score=35.71 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999863
No 213
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.41 E-value=2.7 Score=41.81 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+++..|+........+|..|+..+..+......|+.+|.+|
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444333333444444444444444444555544444
No 214
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=72.17 E-value=13 Score=36.43 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.|=+...+.|..+++.|......|..++......+..|+.+...|+-+|.+|+.
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 334445566667777777766777777777666777777777777766666643
No 215
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=71.70 E-value=21 Score=36.17 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNEN 285 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN 285 (340)
+.++++|+.+...+..+.
T Consensus 50 ~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 50 QFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 216
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.52 E-value=16 Score=30.91 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
.++|+.++..|+..|..|+.++..++.+++.|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887777444
No 217
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.10 E-value=17 Score=29.61 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
+.|+.+++.|+.....|+.++..+.++++++
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444444443
No 218
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=71.09 E-value=42 Score=34.06 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++.++||.++..|+.....--..|..|+.-++.++.+..+|..-|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777776666444333666666666666666666555443
No 219
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=70.92 E-value=8.7 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++...-+....|+.+|..|..+|..
T Consensus 14 rlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 14 RFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455666666666666643
No 220
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=70.90 E-value=10 Score=24.58 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
.||+.+..|..-.++|++++++|.+..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777776544
No 221
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=70.84 E-value=14 Score=33.48 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
++|+.+-.....+...|....++|++|+..|+..|+.|.|..
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 346666677777888888888999999999999999999854
No 222
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=70.16 E-value=3.8 Score=29.55 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
..++++|+.++..|+.+...|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888877777654
No 223
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=70.01 E-value=15 Score=32.67 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
..-++.|..|+.+|..|..++...++++..+..+
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444444444
No 224
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.00 E-value=42 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..|+.++...+.+...|..++..-+......+.++..|..+|+.|
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444
No 225
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=69.85 E-value=10 Score=27.12 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 264 RLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNS 308 (340)
Q Consensus 264 R~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~ 308 (340)
-+||.+-+++|.. |+.+...|+.++ .++.+.+|..+...
T Consensus 5 errr~e~ld~l~~----LEkqF~~LkEql--Y~ERl~ql~~~Lee 43 (49)
T 2xus_A 5 ERRRSECVSEMLD----LEKQFSELKEKL--FRERLSQLRLRLEE 43 (49)
T ss_dssp CHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3566666666543 667777776655 33333444443333
No 226
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.21 E-value=40 Score=29.29 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 019499 296 SEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+.+...++..|..|+.+|..-.+
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~ 129 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDT 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777653
No 227
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=69.18 E-value=13 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=10.3
Q ss_pred cCCCccccccccccCCC
Q 019499 194 SMPATNLNIGMDLWNTS 210 (340)
Q Consensus 194 ~~~~t~Lnigmd~~~~~ 210 (340)
.++.-.|.+|-.+|...
T Consensus 50 sgF~L~LTDG~sAW~G~ 66 (184)
T 3w03_C 50 SGFVITLTDGHSAWTGT 66 (184)
T ss_dssp GEEEEEEECSSCEEEEE
T ss_pred CceEEEEECCCceeeEE
Confidence 45555666666666554
No 228
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=69.03 E-value=13 Score=27.34 Aligned_cols=12 Identities=17% Similarity=0.435 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 019499 303 TSENNSIKEDLS 314 (340)
Q Consensus 303 ~~EN~~Lk~eL~ 314 (340)
+.|...|.++|.
T Consensus 54 eeevkkleeeik 65 (67)
T 1lq7_A 54 EEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 229
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=68.62 E-value=6.6 Score=28.02 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
.+-..||.-|..|+..|..|...|..|.+.+..|+..
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 3445667777788888888888887777777666543
No 230
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=68.57 E-value=7.6 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
|..+++.|..++..|+.|..+|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 231
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=68.36 E-value=31 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHH
Q 019499 247 LKRQKRKQSNRE-SARRSRLRKQAECEEL 274 (340)
Q Consensus 247 ~KR~rRk~~NRE-SARRSR~RKq~~leeL 274 (340)
-|-.=+-++||| +-+.+|.||+.-..++
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455678888 5566777766544333
No 232
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=68.29 E-value=19 Score=32.08 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q 019499 306 NNSIKEDLSRL 316 (340)
Q Consensus 306 N~~Lk~eL~~L 316 (340)
|..|+.+|..|
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 233
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.28 E-value=11 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.+...|+.|..+|+.-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 234
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.02 E-value=17 Score=28.70 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
++-+.|..+|+.|+.|+..|+.++..|++-
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555443
No 235
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.00 E-value=5.1 Score=39.85 Aligned_cols=46 Identities=39% Similarity=0.431 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+|+.|++.|+.|...|+.++.+++.++..|+.+...+++++..+..
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~ 74 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ 74 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444455555555556666666666666666666667777766554
No 236
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.67 E-value=40 Score=33.10 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 293 QRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
..|..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 103 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE--ARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 3455555555555555555555555 555555555555
No 237
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.43 E-value=13 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
|..+++.|..+...|+.|-.+|+..|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 444444444455555555555555443
No 238
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.94 E-value=20 Score=28.19 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRL 295 (340)
Q Consensus 284 EN~~Lr~el~~L 295 (340)
|...|+-++..|
T Consensus 27 Ei~~Lr~kv~el 38 (81)
T 3qh9_A 27 ELRHLKIKVEEL 38 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 239
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=66.69 E-value=58 Score=30.67 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=51.0
Q ss_pred HHHHhHH-HHHHHHHHHHHHHHHHHHH------H----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 252 RKQSNRE-SARRSRLRKQAECEELQAR------V----------ETLS---NENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 252 Rk~~NRE-SARRSR~RKq~~leeLE~r------v----------~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+++...+ ++++++.+=-..++++++- . ..|+ ..-++|+.+++.....+.....+-..++.
T Consensus 126 Kk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~ 205 (279)
T 3qwe_A 126 KRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQ 205 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 6778888888888888741 0 1122 12244777888888888888888888888
Q ss_pred HHHHhcCchhhhhhhhc
Q 019499 312 DLSRLCGPEAVANLEQS 328 (340)
Q Consensus 312 eL~~L~g~~~~~~L~~~ 328 (340)
+|.... +..|+.|...
T Consensus 206 eL~~tk-~~~v~~Lr~L 221 (279)
T 3qwe_A 206 DLEIAK-QRIVSHVRKL 221 (279)
T ss_dssp HHHHHH-HHHHHHHHHH
T ss_pred HHHHhh-HHHHHHHHHH
Confidence 888764 7777666543
No 240
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.59 E-value=27 Score=35.32 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDEL 292 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el 292 (340)
|..+++.|+++-..+.++|
T Consensus 45 ~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 241
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=66.34 E-value=27 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLRKQAECEELQARVET 280 (340)
Q Consensus 258 ESARRSR~RKq~~leeLE~rv~~ 280 (340)
|.|+|-=+|-+++|++.+.-+..
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~ 339 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVAR 339 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454444444444444433333
No 242
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=66.28 E-value=29 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+..+|..+..+++.|+.+...|...|.++.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777777777777764
No 243
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=65.97 E-value=51 Score=28.33 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 256 NRESARRSRLRKQAECEELQARVETLSNENRNLRD------------ELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 256 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~------------el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
||..--.++.+=-...+.|=.+|+.|+.-.+.||. +++.+.+++..+..+...|...|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666666666666666654 455555556655555555554443
No 244
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.68 E-value=71 Score=32.23 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHHH
Q 019499 245 RELKRQKRKQSNRES 259 (340)
Q Consensus 245 ~e~KR~rRk~~NRES 259 (340)
++++..-..+.|+.+
T Consensus 103 qeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 103 RDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh
Confidence 444444445555544
No 245
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=65.67 E-value=62 Score=33.19 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
++.+|++++++++|..+-.+-+.++++.
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665544444444443
No 246
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=65.58 E-value=7.1 Score=24.21 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDE 291 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~e 291 (340)
|..+|-.|+.|...|+.+
T Consensus 5 lkdevgelkgevralkde 22 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHH
Confidence 333333333333333333
No 247
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=65.42 E-value=13 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.+...|+.|-.+|+.-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344445445455555555555555443
No 248
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=65.14 E-value=6.4 Score=28.52 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 293 QRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..+.++++.|..||..|+.+|..|.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666666554
No 249
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=65.12 E-value=39 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 019499 269 AECEELQARVETLSNENRNLRDEL------------QRLSEECEKLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el------------~~L~~e~~~L~~EN~~Lk~eL~~L~g~ 319 (340)
.++..|+.++..|+.+...|+.++ -.+-.++..++.--..|-..|..++|.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 444555555555555555554322 122233444444445555666666653
No 250
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=65.07 E-value=13 Score=34.21 Aligned_cols=42 Identities=10% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
++..|+++++..+.|+..++..+...++...+|+..-.++.-
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLL 220 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 567778888888888888888777777766666666555543
No 251
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=64.95 E-value=4.8 Score=41.32 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+..+|+.++..++.+......+|....+....|..+...+.++-..|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l 382 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEEL 382 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888777776666666665555555554444443333
No 252
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=64.84 E-value=24 Score=32.81 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..+|.+|..+++.|...-..+.++|..|+++-..|+.++..++.+|..++-
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999999999988863
No 253
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.68 E-value=27 Score=24.27 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 019499 274 LQARVETLSNEN 285 (340)
Q Consensus 274 LE~rv~~Le~EN 285 (340)
||.+-+.|+..|
T Consensus 15 lenenetlkkkn 26 (49)
T 3he5_A 15 LENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhcccHHHHHhc
Confidence 333333333333
No 254
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=64.30 E-value=9.7 Score=30.17 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.|+.++..|+.+...|..++..++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655543
No 255
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=64.16 E-value=3.6 Score=34.85 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
+|..+|+.|..|+.+|+.+++.|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665554443
No 256
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.08 E-value=17 Score=28.31 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..|..++..|..++..++.+...|+..|.
T Consensus 75 e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 75 ETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 257
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=63.84 E-value=42 Score=26.19 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|..+|+.++.|+..|+.+...| ..|..+-..|.+-|.+|
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L----~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDL----AEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34444444444444444443333 23333444444444443
No 258
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.41 E-value=25 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
++....+.|...|+.++..|+..++...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333
No 259
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.30 E-value=60 Score=26.47 Aligned_cols=9 Identities=0% Similarity=0.324 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 019499 275 QARVETLSN 283 (340)
Q Consensus 275 E~rv~~Le~ 283 (340)
|..+..|+.
T Consensus 68 E~di~~lrK 76 (119)
T 3ol1_A 68 ENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 333333333
No 260
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.26 E-value=52 Score=27.11 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019499 300 EKLTSENNSIKEDL 313 (340)
Q Consensus 300 ~~L~~EN~~Lk~eL 313 (340)
..|+.+...++.++
T Consensus 87 ~~lE~eL~~~r~em 100 (131)
T 3tnu_A 87 GSVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 261
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=63.17 E-value=13 Score=29.32 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.+++.+...|+..|..|..++..|+.
T Consensus 51 ~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 51 AKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344455555555566655555554433
No 262
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.11 E-value=16 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.++..|+.|..+|+.-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345555555555556666666655543
No 263
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.70 E-value=38 Score=26.03 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.+..|+.++..++.+......+...|-.-...|..|...-+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444444444444444444444444444333
No 264
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=62.53 E-value=15 Score=33.83 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 019499 284 ENRNLRDELQRLS 296 (340)
Q Consensus 284 EN~~Lr~el~~L~ 296 (340)
+|..+..++..|.
T Consensus 97 ~Ne~l~~~~~~l~ 109 (252)
T 3e98_A 97 ENDRLFDKTRRLV 109 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 265
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=62.44 E-value=62 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 019499 280 TLSNENRNLRDELQRLSEECEKLT-------SENNSIKEDLSRL 316 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~-------~EN~~Lk~eL~~L 316 (340)
.|+..+.+|.+.|..|.++--.|+ -|...|+.++.+|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344444555555555554444443 3444555555554
No 266
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=62.31 E-value=79 Score=28.70 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN 283 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~ 283 (340)
++...+..+-+..|+-|-+...++++.++.|..++...-.
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~ 138 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAG 138 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999888888777664433
No 267
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=62.10 E-value=38 Score=27.75 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+..++.+..+|..++..|+..++.|+
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 268
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.49 E-value=17 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|.+++.++-.+++..+.+...|+.++..|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 269
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.25 E-value=36 Score=28.79 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+.+|+...+.|+.++..++.+...|
T Consensus 59 ~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 59 KQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444
No 270
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=61.18 E-value=40 Score=31.15 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++..++.+++.++.+...++.+|..
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333
No 271
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=61.15 E-value=14 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
|..+++.|-.++..|+.|..+|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444555555544
No 272
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.02 E-value=56 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019499 295 LSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 295 L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++.++..|+.+...-...|..+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333333333333
No 273
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.50 E-value=17 Score=36.19 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 268 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
+.++++|+.+...+..+...|+. +...|..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 108 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK--KKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 33344444444444444433321 133455555666666666666666665 555555555555
No 274
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.24 E-value=55 Score=25.02 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 282 SNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 282 e~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..-...||.++....+-+.+|+.++.-++..+..|.
T Consensus 23 nvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 23 KKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333344455555555555555555555555554443
No 275
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=60.12 E-value=8.5 Score=37.97 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
|..++..|++++..|+.+...|.++|..
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444
No 276
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=60.02 E-value=15 Score=34.04 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
-.+|+.++.....|..++..+.+..+..+.....|...|.+|
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL 46 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEI 46 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333333444444444444444
No 277
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.94 E-value=61 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.+.+...|..++..|+.++..|..+...|+.++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555554
No 278
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=59.91 E-value=15 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDE 291 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~e 291 (340)
+.||.++..|+...+.|.++
T Consensus 4 ealekkcaalesklqalekk 23 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKK 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333
No 279
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=59.85 E-value=24 Score=23.17 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..|++++..|++++..|.-....|++++..|.
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777788888888888888776653
No 280
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=59.84 E-value=13 Score=24.69 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
|..+++.|-.+...|..|..+|+.-
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4444444444445555555555443
No 281
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=59.53 E-value=5 Score=33.23 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++.|..++.+|+.||..||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777778889999999998865
No 282
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=59.41 E-value=25 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 309 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~L 309 (340)
++.|.+|.+++..|+.|--.|..++..-.-++..|......|
T Consensus 48 ~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 48 RDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 466778888888888888888888888888888888777776
No 283
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=59.38 E-value=57 Score=24.93 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhc
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~ 328 (340)
.+|..++..-+.|...|..-+..|+..+.+...=|..|..++..++ ..+..|+-.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q--~s~~~l~k~ 60 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ--IKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHhh
Confidence 3555566666666666666666666666666666666666655444 444444433
No 284
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=59.34 E-value=11 Score=24.32 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 293 QRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..|.++..+.+.||-+|..++.+|
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555666665555554
No 285
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.96 E-value=35 Score=30.83 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+|++++..|+.+|..|..+++.|..+++++..
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554444443
No 286
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=58.91 E-value=17 Score=27.73 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+.+.+..+++.|+.|-.-.-.+|..+..-|+..+.++..|..+|..
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555554444445555555555555454444444443
No 287
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.65 E-value=64 Score=25.26 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 266 RKQAECEELQARVETLSN-------------------ENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~-------------------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+-+.+++.|+..+..|+. .......++..++.++..|..+...|..++..|.
T Consensus 28 ~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 28 ELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666643 2334556666666677777777777776666665
No 288
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=58.51 E-value=12 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+|..+++.|.+++..|+.|+..|+.++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666554
No 289
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=58.31 E-value=26 Score=26.96 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++.++..+++.|...-.-+..+|..|.++-..|+.+...+..+|..++
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888777777777777777777777777777766665543
No 290
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=58.30 E-value=56 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.+..++..|+...+.++.|...++.++++.+.+..+||++..
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555555555555443
No 291
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=58.12 E-value=31 Score=26.72 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...|..+++.+..++..|..+...|..++..+.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776665
No 292
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=58.03 E-value=29 Score=27.88 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA 323 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~ 323 (340)
+-+.|+-.+|..++...- -..+|..|..++.+|..|-..+..+|..|-|++-.+
T Consensus 32 qvikEIs~Kv~~Iqn~~L-~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~ 85 (92)
T 1x4t_A 32 QIIGEISKKVAQIQNAGL-GEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTT
T ss_pred HHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 445566666665554211 123788888899999999999999999999987654
No 293
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=58.01 E-value=26 Score=30.60 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVET 280 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~ 280 (340)
++|++++.+|..+...
T Consensus 22 ~~K~~~LqeL~~Q~va 37 (155)
T 2aze_A 22 KQKQSQLQELILQQIA 37 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555566665554443
No 294
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.81 E-value=25 Score=34.83 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++++..||..+...+.+...|+..+..++.+++.|+.....|..+|..
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 137 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666777777777777777777766666665544
No 295
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.76 E-value=32 Score=27.94 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+.|++|++.|+.....|...+..++.++..+..+.+.+..
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777777666666666666666666666555555543
No 296
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=57.71 E-value=51 Score=23.84 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.|+.++..++.-...|..++..+.-+.+.+..++...+..+..
T Consensus 9 ~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~ 51 (66)
T 3m0a_A 9 SLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEA 51 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence 3444444444433344444444444444444443333333333
No 297
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=57.64 E-value=13 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~ 294 (340)
|..+-+.|+.+...|..+++.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 298
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=57.48 E-value=92 Score=26.74 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 019499 298 ECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.++.|..||..++++|...+.
T Consensus 141 SFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 141 SFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHhHHHHHHHHHH
Confidence 467889999999999987764
No 299
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=57.39 E-value=51 Score=23.78 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+..+..|+.++..++.+......+...|-.-...|..|...-+.-|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45678888999999998888888888888888889999888876665
No 300
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=56.78 E-value=25 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.+...|..|-.+|+.-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455555555555555555555543
No 301
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=56.73 E-value=51 Score=23.49 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+-.+.|-.+|..|+..+.++.+|+.+|+.
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34466777777777777777777766643
No 302
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.70 E-value=11 Score=37.52 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+++..||.-+...+.....|+..+......+..|+.....|..+|..
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~ 137 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444555555555555666666666666665565555555555433
No 303
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=56.58 E-value=20 Score=25.60 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el 292 (340)
..|+.|..|+.+...|..++
T Consensus 9 fAERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 304
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=56.32 E-value=27 Score=29.62 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhcC
Q 019499 303 TSENNSIKEDLSRLCG 318 (340)
Q Consensus 303 ~~EN~~Lk~eL~~L~g 318 (340)
.-|...|+.++.+|+|
T Consensus 92 ~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 92 ITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHc
Confidence 3456666666666665
No 305
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=56.06 E-value=79 Score=25.54 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 296 SEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
+.+++.|+.|...|..+|.+......
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~~~ 91 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQKE 91 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776653333
No 306
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=56.02 E-value=5 Score=37.04 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~ 299 (340)
.|.+||++|++|+..|+.+.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE 42 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655554433
No 307
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.87 E-value=73 Score=32.83 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 019499 309 IKEDLSRL 316 (340)
Q Consensus 309 Lk~eL~~L 316 (340)
|..+|..|
T Consensus 572 ~~~ei~~l 579 (592)
T 1f5n_A 572 MKNEIQDL 579 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 308
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.64 E-value=52 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+-||.-=-...++|+.-+..|+.+|..-...|..|+..++
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333456666666777777665555555555444
No 309
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=55.60 E-value=24 Score=29.55 Aligned_cols=36 Identities=8% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
++|++.|+.....|...+..++.++..+......|.
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444334444444444444444444443333
No 310
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.37 E-value=82 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|+.+...=..+|..|+..++.+..++..|..+|..+.
T Consensus 59 lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 59 LKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444344444455555666666666666655543
No 311
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=55.37 E-value=46 Score=23.71 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+.+.-+.....|..+|..|..++..-+.++..+.++|..
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444455544444444444444444444433
No 312
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=54.98 E-value=1e+02 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAV 322 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~ 322 (340)
++..+..+..++..|+.++..|.+++.+|.....|
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQI 112 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQI 112 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555666666665443333
No 313
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.92 E-value=27 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
+|..+++.|-.+...|..|..+|++-|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455556666666666666666666554
No 314
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=54.54 E-value=6.5 Score=28.55 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLR 289 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr 289 (340)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888887777665543
No 315
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=54.41 E-value=64 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 019499 298 ECEKLTSENNSIKEDLSRLCGPEAVANLE 326 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~ 326 (340)
++..+......|+.++.+++ ..|..|+
T Consensus 63 ~L~e~~~kid~L~~el~K~q--~~L~e~e 89 (98)
T 2ke4_A 63 QIAETLSNIERLKLEVQKYE--AWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45555555566666665555 3444444
No 316
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=54.16 E-value=23 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
.++..|+++|..|++|.++|.++
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433
No 317
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=54.07 E-value=11 Score=30.50 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhhcCCC
Q 019499 292 LQRLSEECEKLTSENNSIKEDLSRLCG-PEAVANLEQSNPT 331 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL~~L~g-~~~~~~L~~~~~~ 331 (340)
+..|+.++..|+.|...|+++|..|+. +..+.++...+++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILED 49 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecC
Confidence 344445555555555666666666655 4445555555544
No 318
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.88 E-value=60 Score=23.45 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 019499 303 TSENNSIKEDL 313 (340)
Q Consensus 303 ~~EN~~Lk~eL 313 (340)
+.||..||.+|
T Consensus 16 k~ENshLrrEL 26 (54)
T 1deb_A 16 KMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 33333333333
No 319
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=53.71 E-value=24 Score=22.51 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019499 295 LSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 295 L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|.++|..|++..+.|..+|+.|
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 320
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=53.42 E-value=8.7 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
.+|+.+...|+.++..|+++++.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 321
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.22 E-value=30 Score=24.01 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
++|-++++....|...-+++|..|+.....|+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777766666654
No 322
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=53.20 E-value=74 Score=29.03 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
++..++.++..++.+...++.+|..+
T Consensus 122 ~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 122 EMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 323
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.05 E-value=7.8 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQ 293 (340)
Q Consensus 280 ~Le~EN~~Lr~el~ 293 (340)
.|+.....|++++.
T Consensus 11 aleqkiaalkqkia 24 (28)
T 3ra3_A 11 ALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 324
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.94 E-value=46 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.+|+.+++.|+.+...|. .+..+...|+..-..|..+|+.+
T Consensus 50 ~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 455556666655554332 22333344444444455555444
No 325
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=52.92 E-value=46 Score=29.32 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.|+..++....+|..|-.++..|+-++..|...-......|...
T Consensus 113 ~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 113 TKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555566666666666666666666666555555443
No 326
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=52.76 E-value=63 Score=25.89 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLT 303 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~ 303 (340)
|+.+++.|.++++.|.
T Consensus 54 L~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLK 69 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 327
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=52.30 E-value=29 Score=28.33 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
.|+..+.+|...|..|.++--.|+.
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~ 70 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQE 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444555555555555554444433
No 328
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=52.29 E-value=26 Score=33.20 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
.++++.|+.+.+.|+.|.++|+.++..+++...
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~ 216 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANA 216 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 567888888888888888888888777776533
No 329
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=52.19 E-value=52 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSE 297 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~ 297 (340)
+.+++.|+.+..+|...+..|..
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 330
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.18 E-value=15 Score=36.21 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhhhcCCC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGP-EAVANLEQSNPT 331 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~-~~~~~L~~~~~~ 331 (340)
+.+++++.++..+......|. .+...|..+...|++++..|+.. ..+..+...+++
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~-------~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~ 81 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLE-------AQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSD 81 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 345555555555444444444 44444555555666666666653 334444444443
No 331
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=52.15 E-value=1.2e+02 Score=26.63 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 019499 246 ELKRQKRKQSNRESARRSR 264 (340)
Q Consensus 246 e~KR~rRk~~NRESARRSR 264 (340)
.+.+++-+++.++++|.-+
T Consensus 31 ~le~ek~~l~~~e~~r~k~ 49 (169)
T 3k29_A 31 LLELEQEKLRERESERDKV 49 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555443
No 332
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=52.08 E-value=33 Score=26.93 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
-+|+..|+.++..+.. +.. +...|+..|..|..+|.+|.
T Consensus 38 vdYI~~Lq~e~~r~~e-------~e~----r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKD-------LEN----RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHH----HHHHhhhhhHHHHHHHHHHH
Confidence 3566666554444333 322 23556777777777777664
No 333
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=51.83 E-value=30 Score=32.40 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSE 305 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~E 305 (340)
+++++..++.+..+...|..++..|+.++..|+.+
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555555555544444444444
No 334
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.50 E-value=69 Score=25.12 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhc
Q 019499 294 RLSEECEKLTSENNS-IKEDLSRLC 317 (340)
Q Consensus 294 ~L~~e~~~L~~EN~~-Lk~eL~~L~ 317 (340)
.+..++...+.+... |+.+|.+|.
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555556666666 666666654
No 335
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=50.74 E-value=28 Score=27.08 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCchhhhhhhhcCCC
Q 019499 308 SIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 308 ~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
.|..+|++++..+....+..++++
T Consensus 44 sLQvqLE~IRqadt~~qvr~Il~e 67 (79)
T 1tu3_F 44 TLQVQLERIRQADSLERIRAILND 67 (79)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTC-
T ss_pred HHHHHHHHHHhhhhHHHHHHHHcc
Confidence 566666777666655555554443
No 336
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=50.53 E-value=60 Score=29.40 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 264 RLRKQAECEELQARVETLS-------NENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 264 R~RKq~~leeLE~rv~~Le-------~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|.+|+--.+....+++.|. ........+++..+++++.| |..|+++|-.|
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~l---N~~L~eELP~l 195 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF---NVDLQEELPSL 195 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 337
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=50.49 E-value=47 Score=32.03 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLR 289 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr 289 (340)
+++++|+.+++.|+.+..+|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666664
No 338
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=50.48 E-value=6 Score=28.26 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+|..+|.-.-.||..|..-+.+|......|+.....|...|..|
T Consensus 7 qlknrvayklkenaklenivarlendnanlekdianlekdianl 50 (56)
T 3he4_A 7 QLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34444433334666666666555554444444444444444333
No 339
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=50.40 E-value=84 Score=24.14 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
|..++..|++.+..-...-+.|-.+|-.|.-|+.-|......|+
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 33445555554444333334444444444444444444444333
No 340
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.09 E-value=1.1e+02 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.+|+.++..|++.+..-...++.|+.-|+++.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~ 147 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQL 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555555555554443334444444444443
No 341
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.93 E-value=47 Score=33.88 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
+.+++.+-..+++||+.++++....+..+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Y 64 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADY 64 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666665555554443
No 342
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.86 E-value=42 Score=33.94 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=15.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 289 RDE-LQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 289 r~e-l~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..+ ...|++++..|+.+...|.++|..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5555555555555555555555443
No 343
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.66 E-value=35 Score=30.98 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+++++|..++..|.++...+|.+..+
T Consensus 73 ~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 73 AKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555544433
No 344
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=49.65 E-value=28 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 293 QRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 293 ~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..|++++.+|..|...|..+|.
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555554
No 345
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=49.65 E-value=74 Score=23.32 Aligned_cols=43 Identities=35% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 246 ELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 246 e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
|+||-|-+..-|.+-.++|.-=+-+.+-...+ ..||..|+--+
T Consensus 3 e~kryknr~asrk~rakfkn~lqh~r~vaaak----s~en~rlr~l~ 45 (63)
T 2c9l_Y 3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAK----SSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHH
Confidence 56888888889999999998888887777775 34677666544
No 346
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.53 E-value=17 Score=36.13 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..++..+++++..|+.+...++++|+.|+.
T Consensus 71 e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 71 DDQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444444444455555555565543
No 347
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=49.44 E-value=89 Score=28.84 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECE--KLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~--~L~~EN~~Lk~eL~~ 315 (340)
..+..||+++..++.++.....+|..++++.- .+..+-..|.+..++
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777766542 333444444444433
No 348
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.42 E-value=50 Score=25.44 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRN------LRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~------Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..|+.||.++..|+.+... =..++..|..++..+..+...+.++-..|
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888888888876643 12456666666677777766666655444
No 349
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=49.30 E-value=55 Score=30.59 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
+.+.+|+.+++.|+.+...+..++..+.++
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555554444
No 350
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=49.27 E-value=46 Score=31.37 Aligned_cols=53 Identities=11% Similarity=0.287 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 262 RSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 262 RSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
....--..++.+|..+|..++.+-.++.+.++++...+..|+.|..+++..|+
T Consensus 209 ~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 209 EANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444566778888888888888888888888888888888888887765443
No 351
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=49.02 E-value=80 Score=23.50 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L 302 (340)
|..|...|..+|..|+.|+..|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhh
Confidence 3334444444444444444433
No 352
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=48.83 E-value=32 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L 295 (340)
+++..|+.||.....++...
T Consensus 92 ~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444333
No 353
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.43 E-value=95 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
...|..+++.+..++..|..+...|..++.++. ..|..+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk--~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELT--AQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 355677777777777777777777777777776 444433
No 354
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.99 E-value=36 Score=29.19 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+++..|+.||.....++....++.+.|.
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544443333333
No 355
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=47.93 E-value=1.1e+02 Score=28.33 Aligned_cols=51 Identities=12% Similarity=0.315 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 268 QAECEELQARVETLSNENR----NLRDE-LQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~----~Lr~e-l~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+++++++.++..|..-.. .++++ +...++.+..|+.|+..-+.+|...+-
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~ 92 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHE 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556777777777766442 22222 334556666677777777777666653
No 356
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=47.83 E-value=1.3e+02 Score=25.56 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=39.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQ---------------AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq---------------~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
.|.++.+-||.-.-.-|..-. ...++..+++..++.+......++......|..|..+...+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677766555544322 12344555555666666666666666666666666666555555
Q ss_pred HHHhc
Q 019499 313 LSRLC 317 (340)
Q Consensus 313 L~~L~ 317 (340)
|..|.
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 55543
No 357
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=47.49 E-value=34 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhcCCC
Q 019499 296 SEECEKLTSENNSIKEDLSRLCGPEAVANLEQSNPT 331 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~ 331 (340)
..+...|..+...|.+++..+. +.+..+...+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ipN 107 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVE--EELKNTLLWIPN 107 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCC
Confidence 4455556666666666666665 555555555555
No 358
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=46.93 E-value=25 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
.|......|.++|..|..+++.|
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 359
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=46.83 E-value=39 Score=31.22 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 281 LSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 281 Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
.+.+...++.++..++.++..++.+...++.+|..
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555666666666666666666665544
No 360
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=46.76 E-value=1e+02 Score=26.08 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
++.|.+|.+++..|+.|.-.|..++..-..++..|......|+.+
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gK 108 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK 108 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcc
Confidence 455666677777777777777777777777777777777776554
No 361
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.69 E-value=1.1e+02 Score=24.61 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
.+...++.|..++..-..|...|+..++.+......|...+..|..+...|..
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777778888888877777777777777777666653
No 362
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=46.67 E-value=44 Score=30.88 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++++|+++..|+....++.+..+...+.+..++.....|...+..
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566667777777776666666666666666666666666655543
No 363
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=46.45 E-value=29 Score=33.34 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
|+.+++.|++++..|+.....|+..|
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444443
No 364
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.37 E-value=32 Score=33.95 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
++.+..|+.+...|..++..+++++.
T Consensus 38 ~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 38 TENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556555555544443
No 365
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=46.30 E-value=1.1e+02 Score=24.48 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+.+.-|+.+++..+..-..=|.--+++..+.+.|..++..|+.++..|.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777766555555555555556666666666655555443
No 366
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=46.06 E-value=37 Score=22.51 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 290 DELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 290 ~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..-..|..+.+.|+..+..|+.+|+.|
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444445555566666666666554
No 367
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=46.00 E-value=35 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+.|...-..|+..+..|.++.+.|..+...|++
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 368
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.87 E-value=1.4e+02 Score=25.48 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 019499 269 AECEELQARVE 279 (340)
Q Consensus 269 ~~leeLE~rv~ 279 (340)
+|+..|+.+++
T Consensus 86 eYn~rL~~E~~ 96 (152)
T 4fla_A 86 EYNGRLAAELE 96 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 369
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=45.73 E-value=46 Score=29.62 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g 318 (340)
+.|.+|.+++..|+.|--.|..++..-.- |...|+.++.+|+|
T Consensus 65 e~ckELh~~I~~LEeEKYDlE~kvkkqdy-------EI~dL~~rV~DLrG 107 (180)
T 1j1e_C 65 DLARQLHARVDKVDEERYDIEAKVTKNIT-------EIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcch-------hHHHHHHHHHHHHh
Confidence 33444444444444444444444444433 44455555555544
No 370
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.55 E-value=21 Score=35.42 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 283 NENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 283 ~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.+...++.++..|+++...++.|+..|+.
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444455555555555666555553
No 371
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.51 E-value=1.3e+02 Score=24.88 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
..+.|+.....|..++..|+.....|..
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 372
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=45.36 E-value=1.1e+02 Score=24.30 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
..|++.|.+++..++..+.-..+|.-|+..
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555667776666666655555555444
No 373
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=45.33 E-value=90 Score=24.90 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEK----LTSENNSIKEDLSRLC 317 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~----L~~EN~~Lk~eL~~L~ 317 (340)
.|.++..--.|...+|..|-.|.....+ -+.|..+||.+|+...
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333344444444444443332 3467778888777643
No 374
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.33 E-value=76 Score=27.82 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019499 285 NRNLRDELQRLSEECEK 301 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~ 301 (340)
..+|.+|+..|+.++..
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 375
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=44.99 E-value=34 Score=29.51 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+..||+++..|+.....+..+|..|+.+++.|+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666666666666555555553
No 376
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.76 E-value=46 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 019499 298 ECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+...++..|..|+.+|.+-.
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555556665555543
No 377
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.46 E-value=39 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENR 286 (340)
Q Consensus 274 LE~rv~~Le~EN~ 286 (340)
|...++.-..|..
T Consensus 12 Lhk~ie~KdeeIa 24 (37)
T 1t6f_A 12 LHKEIEQKDNEIA 24 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 378
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.84 E-value=60 Score=27.08 Aligned_cols=34 Identities=6% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
++.|+.+++.|+.....|+.++..+...++.|..
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777777766666654
No 379
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.57 E-value=36 Score=25.72 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019499 301 KLTSENNSIKEDLSRLC 317 (340)
Q Consensus 301 ~L~~EN~~Lk~eL~~L~ 317 (340)
.-..|+..|+.+|.+++
T Consensus 36 ~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 36 EKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 380
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=42.50 E-value=71 Score=33.14 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 275 QARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 275 E~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+..+..|+.+...++.++..++.+++.|+.....++.+|.+
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433
No 381
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.22 E-value=41 Score=30.13 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el 292 (340)
-...+.+|+++.+.|+.||+.|..+-
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777777777777776653
No 382
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.07 E-value=67 Score=28.34 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++|..-...|+.+...|..+...|..++..|+.+...+.+.+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666666555544433
No 383
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=41.99 E-value=1.9e+02 Score=25.76 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAEC-EELQARVETLSNENRNLRDE---LQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~l-eeLE~rv~~Le~EN~~Lr~e---l~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++.-.-+.--++-|+.+.+.-|..|-.++ +....-++.-+.-+..|+.. +......++.|+....++..+|..|.
T Consensus 65 lG~~SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 65 LGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELD 144 (201)
T ss_dssp HCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444455556666667777777666555 11122222222222333333 23334456666666666666666664
Q ss_pred C
Q 019499 318 G 318 (340)
Q Consensus 318 g 318 (340)
.
T Consensus 145 P 145 (201)
T 3u0c_A 145 P 145 (201)
T ss_dssp S
T ss_pred C
Confidence 3
No 384
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.99 E-value=92 Score=24.95 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 294 RLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 294 ~L~~e~~~L~~EN~~Lk~eL 313 (340)
.|++++.+|..|...|+..|
T Consensus 53 KL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 385
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.97 E-value=1.1e+02 Score=26.25 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENR 286 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~ 286 (340)
+|..|+-+...+..|..
T Consensus 44 elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 44 QLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544443
No 386
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.93 E-value=82 Score=21.60 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNL 288 (340)
Q Consensus 273 eLE~rv~~Le~EN~~L 288 (340)
+|..-++.|+..|.+|
T Consensus 7 elknyiqeleernael 22 (46)
T 3he4_B 7 ELKNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3333344444444433
No 387
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=41.87 E-value=44 Score=27.05 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
|+.+++.|+.+-..|-..+..+++.+..|.
T Consensus 11 Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 11 LTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333
No 388
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=41.45 E-value=1.4e+02 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
--+++...++++..-..|-.++..++..|-.++-.|+.|..+|+.-+.
T Consensus 60 h~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 60 HSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345666777777777777777777777887888888888888876554
No 389
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=41.24 E-value=50 Score=27.37 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQR 294 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~ 294 (340)
+++.+|+.+|+.++..+..|++-...
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666554433
No 390
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=40.94 E-value=19 Score=29.17 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 259 SARRSRLRKQAECEELQARVETLS---NENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 259 SARRSR~RKq~~leeLE~rv~~Le---~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+|-.+=..|+..|++|.+++..++ ..+.-|+.++...+..+..-+..-..|..+...
T Consensus 28 ~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~ 87 (96)
T 3fx0_A 28 QAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKEL 87 (96)
T ss_dssp SSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444557777777777776666 445557777777777666666555544444333
No 391
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=40.39 E-value=1.1e+02 Score=22.71 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
|..-|=.|..|..+|+++...++.-++.-...++.|..-|.++.
T Consensus 5 LVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~ 48 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666665555543
No 392
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.23 E-value=18 Score=35.83 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
|+.++..|+.|+..|..++..|++++..++.+...++
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555666666666666666555555554433
No 393
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=40.11 E-value=43 Score=26.85 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVE-TLSNENRNLRDELQRLSE--ECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 272 eeLE~rv~-~Le~EN~~Lr~el~~L~~--e~~~L~~EN~~Lk~eL~~ 315 (340)
.+|..+|+ .|...+..|..++..|.. ..+.|..+-..|...+..
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~ 82 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQS 82 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 44555555 555555555555543332 333444444444433333
No 394
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=39.45 E-value=1.8e+02 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNEN 285 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN 285 (340)
|+++.+.-..=.+.+.-|++-+..|++|.
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333344444444444444443
No 395
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=39.43 E-value=96 Score=24.99 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 306 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN 306 (340)
+.++-.+|..++..-+.....-++.+..|++.++.|+.|.
T Consensus 55 ~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 55 LLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556666655555555555655555555555443
No 396
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=39.14 E-value=6.3 Score=31.80 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
.+..|.-.|+.+|..|..+++.++.||..||+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke 71 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLS 71 (95)
T ss_dssp --------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777664
No 397
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=39.13 E-value=35 Score=25.93 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.+|..+|..|+....-.. ++..|+.+--.|+.|...|..+..
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444443322222 555555555555555555544433
No 398
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.93 E-value=78 Score=27.52 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
++.|+.|...++.+|+.-++++++|..+...|+.
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 399
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=38.92 E-value=1.1e+02 Score=22.30 Aligned_cols=41 Identities=15% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
.|..+|..|+.||..|..-++.=++.-..|+.=...+-..+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 400
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.89 E-value=1.2e+02 Score=31.83 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=14.8
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 019499 258 ESARRSRLR---KQAECEELQARVETLSNEN 285 (340)
Q Consensus 258 ESARRSR~R---Kq~~leeLE~rv~~Le~EN 285 (340)
+++.+.|.+ +-..+++|++++..|+.|.
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 344444443 3455666666666555543
No 401
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=38.79 E-value=59 Score=20.09 Aligned_cols=8 Identities=13% Similarity=0.517 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 019499 306 NNSIKEDL 313 (340)
Q Consensus 306 N~~Lk~eL 313 (340)
.+.|+.++
T Consensus 16 vralkdev 23 (27)
T 3v86_A 16 VRALKDEV 23 (27)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 402
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.41 E-value=1.3e+02 Score=23.04 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
..-+..+..|+.++..++.+......+...|-.-...|..|...-+.-|+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34455677777777777777777777777777777777777777665554
No 403
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=38.26 E-value=58 Score=25.42 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++.+|...|+.|+.|-.-.-.+|..+.--|+....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34566666777777766666666666655555554444444444444
No 404
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.92 E-value=1.4e+02 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 019499 296 SEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..++...+.+...|+.++..+.
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544
No 405
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=37.86 E-value=12 Score=26.23 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 292 LQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 292 l~~L~~e~~~L~~EN~~Lk~eL 313 (340)
|+.+.+..+.++.++..|+.++
T Consensus 8 LeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 8 LEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344444444444444
No 406
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=37.78 E-value=19 Score=29.53 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNE 284 (340)
Q Consensus 269 ~~leeLE~rv~~Le~E 284 (340)
+||..|+.+++.|+.+
T Consensus 74 eYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 74 DYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666543
No 407
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=37.47 E-value=7.4 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 287 NLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 287 ~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.|+.++..|+=.++.|+..|..|+.+|.
T Consensus 52 alkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 52 ALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp TTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 4778888888888888888888887764
No 408
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=37.41 E-value=1.6e+02 Score=26.15 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
..=|+.+.+.|..|-..+..++..+++++..+..+-...-.......|...+..+
T Consensus 33 ~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~ 87 (217)
T 3aon_A 33 HKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDEL 87 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 3556777777777777777778777777777777766666666666665544433
No 409
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=37.37 E-value=70 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 248 KRQKRKQSNRESARRSRLRKQAECEELQARVETL 281 (340)
Q Consensus 248 KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~L 281 (340)
|+.+|+....++.|+.|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566677777788888888888888888766543
No 410
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=37.35 E-value=84 Score=24.37 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCchhhhhhhhc
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK-----EDLSRLCGPEAVANLEQS 328 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk-----~eL~~L~g~~~~~~L~~~ 328 (340)
.+.+|..+|..|+.|......=-...-+-++.|..+...|| ++++.+-+...|+++.+.
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34444555555555433322211122223345555555555 367777777777766554
No 411
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.29 E-value=2e+02 Score=24.76 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019499 288 LRDELQRLS 296 (340)
Q Consensus 288 Lr~el~~L~ 296 (340)
|...|..|.
T Consensus 103 LEk~id~lE 111 (155)
T 2efr_A 103 LEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 412
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=37.13 E-value=1.4e+02 Score=26.61 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 325 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~~L 325 (340)
.+.|+..+.+|...|..|.++--.|+.....-.-+|..|. ..|.+|
T Consensus 60 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~--~rV~DL 105 (180)
T 1j1e_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLT--QKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHH--HHHHHH
Confidence 4456677777777777777777777776666666777776 455555
No 413
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=36.79 E-value=35 Score=31.57 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 242 QDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNL 288 (340)
Q Consensus 242 ~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~L 288 (340)
..-+++.+.+.|++-+..+.-+..-|++++.+|++++..|+.+...|
T Consensus 264 ~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (321)
T 3p7i_A 264 VPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNAL 310 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444334444455555556665555555444433
No 414
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.52 E-value=1.1e+02 Score=24.70 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 019499 293 QRLSEECEKL 302 (340)
Q Consensus 293 ~~L~~e~~~L 302 (340)
..|+.++..|
T Consensus 70 ~elqgEI~~L 79 (99)
T 3ni0_A 70 KELENEVTKL 79 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 415
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=36.18 E-value=32 Score=27.68 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019499 289 RDELQRL 295 (340)
Q Consensus 289 r~el~~L 295 (340)
+.+++.|
T Consensus 62 ~Rk~DKl 68 (94)
T 3vlc_E 62 NRKLDSL 68 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 416
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.03 E-value=1.5e+02 Score=22.87 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
+..|..+...|.........++..|......|..+...|.++|.
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555566666666666666666655553
No 417
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.94 E-value=1.5e+02 Score=22.87 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.++.+...|++-+..+.-....|+.+...|+++|.-|.
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666665555555566666666666665543
No 418
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=35.38 E-value=10 Score=25.33 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 019499 276 ARVETLSNE 284 (340)
Q Consensus 276 ~rv~~Le~E 284 (340)
.++..|+.+
T Consensus 11 kKiq~lq~q 19 (37)
T 3azd_A 11 RKIRSLQEQ 19 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 419
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.88 E-value=1.2e+02 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDEL 292 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el 292 (340)
++.||..++.|+..-..|..+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~ 28 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEY 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 420
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.59 E-value=63 Score=21.89 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019499 288 LRDELQRLSEE 298 (340)
Q Consensus 288 Lr~el~~L~~e 298 (340)
|..++..|+++
T Consensus 20 l~~kl~~LkeE 30 (38)
T 2l5g_A 20 LEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 421
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=34.52 E-value=73 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 263 SRLRKQAECEELQARVETLSNENRNLRDELQ 293 (340)
Q Consensus 263 SR~RKq~~leeLE~rv~~Le~EN~~Lr~el~ 293 (340)
+-.+.+.+++.||.++...+.++..+..+++
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555543
No 422
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.29 E-value=21 Score=26.18 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNL 288 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~L 288 (340)
.+..+++.|+.+|..|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888888888877665544
No 423
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=34.03 E-value=1.7e+02 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.++++++-++++ -|+.+.+.++.+|.
T Consensus 224 v~~~~~k~Qrey-~LrEQlk~IqkELG 249 (252)
T 3ljc_A 224 VKKQMEKSQREY-YLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 444444444443 34555555555554
No 424
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=33.50 E-value=47 Score=26.66 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRL 295 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L 295 (340)
+..|+.+...|+.+|..|
T Consensus 6 l~~l~~~~~~l~~~l~~l 23 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELT 23 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 425
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.46 E-value=93 Score=23.82 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhcCc
Q 019499 301 KLTSENNSIKEDLSRLCGP 319 (340)
Q Consensus 301 ~L~~EN~~Lk~eL~~L~g~ 319 (340)
.-..++..|+.+|..+.+.
T Consensus 44 ~aV~~Ll~LKa~l~~~tg~ 62 (79)
T 2djv_A 44 AEVAKLLDLKKQLAVAEGK 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3344456667777776653
No 426
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=33.28 E-value=1.8e+02 Score=27.75 Aligned_cols=12 Identities=50% Similarity=0.570 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 019499 272 EELQARVETLSN 283 (340)
Q Consensus 272 eeLE~rv~~Le~ 283 (340)
+.|+.+++.+..
T Consensus 227 e~L~~ere~~~e 238 (302)
T 3ibp_A 227 ESLHAEREVLSE 238 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 427
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=33.02 E-value=93 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 289 RDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 289 r~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
......++.....+..-+..+...|...
T Consensus 54 ~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 81 (98)
T 3gwk_C 54 EAQFNELSPKITEFAQLLEDINQQLLKV 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444444443
No 428
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.00 E-value=2.3e+02 Score=24.40 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
..|+..+...+.....++.+...|++++..|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~Le 100 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLT 100 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 34444555555555555555555555555555
No 429
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=32.87 E-value=25 Score=33.52 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLT 303 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~ 303 (340)
+...|...++...+++.||.|.|=-.++.+|..-|-.-..... -..++..|+.-+..|+
T Consensus 5 ~~~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~-k~dk~~il~~~~~~l~ 63 (387)
T 4f3l_B 5 EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR-KLDKLTVLRMAVQHMK 63 (387)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSS-CCCHHHHHHHHHHHHH
T ss_pred cccchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccc-ccCHHHHHHHHHHHHH
Confidence 3444555566667788999999989999999887665322111 1234455555544444
No 430
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.74 E-value=61 Score=27.31 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+++|..+|..|+.+...|..++..+.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666543
No 431
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=32.60 E-value=71 Score=34.33 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=18.4
Q ss_pred CchhhhhhhhcCCCCCCCCCCCCCCCCCCCCCcccc
Q 019499 29 ADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWG 64 (340)
Q Consensus 29 pdW~~smQaYy~~~~~pp~~~~s~vas~~phPYmWg 64 (340)
.||.=|=|-|.| ++.|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG--~pIP~w~~~~----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWG--HQIPAWYCED----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSS--CCCCCEEETT----TCCEECCC
T ss_pred cceeEecccCCC--cccCceecCC----CCEEEEec
Confidence 688855698887 4456666541 12456665
No 432
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=32.51 E-value=2e+02 Score=23.30 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.|.+|.+++..|+.|--.|..++..- .-|...|+.++.+|
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~kv~kq-------~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQEKFKQQ-------KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhh-------hHHHHHHHHHHHHh
Confidence 444555555555555555555555444 44444444444444
No 433
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=32.45 E-value=1.3e+02 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 280 TLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|+....+|+.....|.+++.....++..|..+|..|.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33333344444444444444444444555555555543
No 434
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.22 E-value=1.7e+02 Score=22.37 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNE 284 (340)
Q Consensus 268 q~~leeLE~rv~~Le~E 284 (340)
+..|++|+..|..|...
T Consensus 31 ~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 31 TENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34455555555555544
No 435
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=32.07 E-value=29 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
|-.+++.|.++..+|.+++..|+
T Consensus 103 ~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 103 LLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 436
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=32.07 E-value=58 Score=28.93 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 274 LQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 274 LE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
|+..+..+......++.+|..|++++..|
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~~l 69 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQVL 69 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555554444333
No 437
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=31.98 E-value=3.1e+02 Score=25.28 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 266 RKQAECEELQARVETLSNENRNLRDELQRL 295 (340)
Q Consensus 266 RKq~~leeLE~rv~~Le~EN~~Lr~el~~L 295 (340)
+.+....++..+|...-.+...++.++..+
T Consensus 348 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~ 377 (446)
T 3pik_A 348 NYEQKIQNAFKEVADALALRQSLNDQISAQ 377 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 438
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=31.75 E-value=3.7e+02 Score=27.51 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSN 283 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~ 283 (340)
++.++..++.-|..|+.
T Consensus 361 ArNEItsaeSaInslqa 377 (602)
T 1cii_A 361 ARNKITSAESAVNSARN 377 (602)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444443333333
No 439
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.63 E-value=1.1e+02 Score=24.63 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.++..|+.|...|..+-..|-+.+..+....+.|.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444443
No 440
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=31.36 E-value=1.7e+02 Score=26.29 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 264 RLRKQAECEELQARVETLSNENRNLRDELQ 293 (340)
Q Consensus 264 R~RKq~~leeLE~rv~~Le~EN~~Lr~el~ 293 (340)
+.+|.+-++.|..++..|+.+-..|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887777776654
No 441
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=31.33 E-value=1.3e+02 Score=20.98 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
++...|-+||.+|+.-......+++.+-.++..+
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~ 40 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKML 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555555555554444443
No 442
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=31.31 E-value=1.8e+02 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
+.|..++..+..++.+|+.++..+-++...
T Consensus 41 d~L~~ef~~i~~~~~~~r~~~~~~~~~a~~ 70 (217)
T 3aon_A 41 DELMRQFILLIRKNNELRQAIEKETQTAMK 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777888887777776555433
No 443
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=31.30 E-value=2.6e+02 Score=24.71 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 288 LRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 288 Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
...++..++..+..+..|...++.
T Consensus 135 ~~~~l~KaK~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 135 CWKQLESSKRRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 444
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=31.23 E-value=1.9e+02 Score=24.48 Aligned_cols=20 Identities=0% Similarity=0.089 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 296 SEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 296 ~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+++...++.....|..+|..
T Consensus 52 k~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 52 KKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555544
No 445
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.07 E-value=93 Score=23.94 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLS 296 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~ 296 (340)
+.++.|+..++.|+..-..|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666666655443
No 446
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.68 E-value=2.1e+02 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 019499 298 ECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 298 e~~~L~~EN~~Lk~eL~~L 316 (340)
.|+.|.+.+..||..|...
T Consensus 117 Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 117 HCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5556666666666555544
No 447
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.61 E-value=1.8e+02 Score=23.35 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSN 283 (340)
Q Consensus 268 q~~leeLE~rv~~Le~ 283 (340)
+.++.+|+.++..|+.
T Consensus 53 ~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554443
No 448
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=30.46 E-value=1.1e+02 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
.++|+++++.|+.....-...+..|+..+..-..|..+|.
T Consensus 24 sedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLE 63 (119)
T 1lwu_A 24 LRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVE 63 (119)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555444444444444
No 449
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.28 E-value=1.5e+02 Score=29.11 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSN------ENRNLRDELQRLS 296 (340)
Q Consensus 268 q~~leeLE~rv~~Le~------EN~~Lr~el~~L~ 296 (340)
.++++.|+.++..+.. |.+.|..++..|+
T Consensus 206 ~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~ 240 (517)
T 4ad8_A 206 ARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLS 240 (517)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3445555555555554 4455555554443
No 450
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.24 E-value=70 Score=32.72 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019499 269 AECEELQARVETLS 282 (340)
Q Consensus 269 ~~leeLE~rv~~Le 282 (340)
++|.+++++....+
T Consensus 342 ~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 342 DRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 451
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=30.13 E-value=93 Score=25.83 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 291 ELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 291 el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++..|.+++..|......|...|..
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 452
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=29.98 E-value=58 Score=27.46 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLR 289 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr 289 (340)
..+.|+++++.|..+..+|+
T Consensus 139 ~~~~l~~~i~~L~~~l~~le 158 (166)
T 3pjs_K 139 AEEAYTRTTRALHERFDRLE 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 453
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=29.79 E-value=1.1e+02 Score=25.76 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 019499 271 CEELQARVETL 281 (340)
Q Consensus 271 leeLE~rv~~L 281 (340)
+.-|+.+|..+
T Consensus 44 ig~L~~~l~~~ 54 (125)
T 4g2k_A 44 IGNLVSRLRRL 54 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 454
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.77 E-value=54 Score=27.51 Aligned_cols=45 Identities=22% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLR-----DELQRLSEECEKLTSENNSIKED 312 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr-----~el~~L~~e~~~L~~EN~~Lk~e 312 (340)
+++|..|..+++.++.....+. ..+..+.+|++.|..+..+|+.+
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665544432 23445555555555555555544
No 455
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.76 E-value=78 Score=30.30 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 019499 286 RNLRDELQRLS 296 (340)
Q Consensus 286 ~~Lr~el~~L~ 296 (340)
+.|+++|..|+
T Consensus 38 e~L~~KI~~LE 48 (323)
T 1lwu_B 38 EHLRAKMQRME 48 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 456
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=29.50 E-value=1e+02 Score=25.95 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019499 275 QARVETL 281 (340)
Q Consensus 275 E~rv~~L 281 (340)
.++++.|
T Consensus 151 ~~~l~~l 157 (166)
T 3pjs_K 151 HERFDRL 157 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 457
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=29.46 E-value=2e+02 Score=22.38 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
-++.|+.=++.|..-..+-+.+....+.+...-......+++.|..
T Consensus 25 ~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 25 TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666676666666666666666655555556666665554
No 458
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.18 E-value=2.1e+02 Score=25.10 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019499 280 TLSNENRNLRDELQRL 295 (340)
Q Consensus 280 ~Le~EN~~Lr~el~~L 295 (340)
..+.-|..|+.+|..|
T Consensus 194 ~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 194 VFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555555
No 459
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.14 E-value=2.5e+02 Score=23.30 Aligned_cols=71 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 244 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 244 E~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
++..+++.-+..-+.+-+....|+.+...+|..+|..-..+....+ .....+.++..|..+-..++.+|..
T Consensus 19 q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~-~~~~yk~~y~~l~k~Y~~~~keLd~ 89 (119)
T 3etw_A 19 QNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA-NTRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHH
No 460
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.95 E-value=2.2e+02 Score=24.92 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
...+.|..++..|..--..|...+......+..|..+...|+-+|..|+
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3345666666666666666666666666666677777777776666664
No 461
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=28.92 E-value=1.9e+02 Score=21.99 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhc
Q 019499 271 CEELQARVETLSNENRNLRDELQRLSE--------------ECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 271 leeLE~rv~~Le~EN~~Lr~el~~L~~--------------e~~~L~~EN~~Lk~eL~~L~ 317 (340)
+++|+.+|..|...-.++...|-.|.+ ++-..-.+...++.+|..|.
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.91 E-value=63 Score=25.89 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019499 292 LQRLSEECEKLTSEN 306 (340)
Q Consensus 292 l~~L~~e~~~L~~EN 306 (340)
|..|+.++..|+.+.
T Consensus 6 l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 6 LANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 463
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=28.82 E-value=2.1e+02 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHh
Q 019499 305 ENNSIKEDLSRL 316 (340)
Q Consensus 305 EN~~Lk~eL~~L 316 (340)
....|+.+|..|
T Consensus 71 kl~~L~~eL~eL 82 (86)
T 1cxz_B 71 RLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333333344333
No 464
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.68 E-value=88 Score=26.01 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKE 311 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~ 311 (340)
+.|+.....|..++..|++....|......++.
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 465
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.62 E-value=95 Score=20.85 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019499 276 ARVETLSNENRNLRDELQ 293 (340)
Q Consensus 276 ~rv~~Le~EN~~Lr~el~ 293 (340)
.+|..|+.+|..|..+|.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665553
No 466
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.49 E-value=2.2e+02 Score=22.44 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
-+..+..|+.++..++.+......+...|-.-...|..|...-+.-|
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777766666666666666666666666655444
No 467
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.39 E-value=58 Score=23.88 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 019499 273 ELQARVETLSNEN 285 (340)
Q Consensus 273 eLE~rv~~Le~EN 285 (340)
.|+++|..|+...
T Consensus 6 aleekvkaleekv 18 (67)
T 1lq7_A 6 ALEEKVKALEEKV 18 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 468
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=28.17 E-value=1.3e+02 Score=22.12 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 269 AECEELQARVETLSN-----ENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 269 ~~leeLE~rv~~Le~-----EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
..+..|...|..|.. -..........+......+...+..+...|...
T Consensus 30 ~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (99)
T 3zbh_A 30 ELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNS 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 122234445555555555555555555555443
No 469
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=28.13 E-value=1.2e+02 Score=26.82 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 290 DELQRLSEECEKLTSENNSIKEDLS 314 (340)
Q Consensus 290 ~el~~L~~e~~~L~~EN~~Lk~eL~ 314 (340)
.++..++.+++.++.+...++.+|.
T Consensus 105 ~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 105 ADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444444444443
No 470
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.78 E-value=1.7e+02 Score=29.03 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 277 RVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 277 rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++..|+.-+.....+|..|+..+.........|+..+..|.
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666666666666666666666654
No 471
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.58 E-value=1.9e+02 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+|+..-....++|..|..++...+.++..+..+|...
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 472
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.45 E-value=3.4e+02 Score=27.54 Aligned_cols=19 Identities=0% Similarity=0.039 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHhHHH
Q 019499 241 IQDERELKRQKRKQSNRES 259 (340)
Q Consensus 241 ~~DE~e~KR~rRk~~NRES 259 (340)
+.-|+..+....+++|+..
T Consensus 57 ~kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 57 DDTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 3456777777777887764
No 473
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=27.41 E-value=74 Score=20.47 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019499 295 LSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 295 L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
|++..+.|+..|-.-+.++..|
T Consensus 6 lkkrvqalkarnyaakqkvqal 27 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQAL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3333344444444444444433
No 474
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=27.39 E-value=35 Score=25.39 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Q 019499 256 NRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLS----EECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 256 NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~----~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
.|.+|-+.|+.- +..-|.++..++.|......++...+ -+.+.|+.|-..++.+|...+
T Consensus 9 qrlaaiktrlqa---lggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 9 QRLAAIKTRLQA---LGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHH---CSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 455555555432 22233444445555555555444332 245667777777777777654
No 475
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=27.39 E-value=2.6e+02 Score=25.07 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
+-+..++++++...|+.+...|...+......+..+..--..+.+-|..+..+.
T Consensus 36 ~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~ 89 (243)
T 4a3a_A 36 KDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPD 89 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
No 476
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.37 E-value=81 Score=23.85 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
.+-.++-.+|..+|..|+....-.. ++..|+.+--.|+.|...|..+...-.+.+.
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~~~~~ 75 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYREKQKSER 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHHhccccc
No 477
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=27.26 E-value=94 Score=28.27 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 237 PDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQ 293 (340)
Q Consensus 237 ~~~~~~DE~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~ 293 (340)
++.....-+++...+.|+.-+.-+.-+..-|++++.+|++++..|+.....|.....
T Consensus 250 ~~~~y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (310)
T 3n5l_A 250 DDDQLLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQKTA 306 (310)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 478
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=27.19 E-value=2.4e+02 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPE 320 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~ 320 (340)
+..++++++...|+.....|..++......+..+..-...|.+.|..+..+.
T Consensus 33 ~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~ 84 (237)
T 4avm_A 33 ERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
No 479
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.11 E-value=1.7e+02 Score=25.75 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 247 LKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEEC 299 (340)
Q Consensus 247 ~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~ 299 (340)
++..++.+.++ ....+.-=++++++|+++++.|+.....|...+..++...
T Consensus 66 l~~i~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 66 LEEMKKAQDLE--MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 480
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=27.05 E-value=13 Score=33.59 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 260 ARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEK 301 (340)
Q Consensus 260 ARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~ 301 (340)
.+..++.++++.++.+++.+.+..+..+|+++++.|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 240 AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcc
No 481
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.99 E-value=2.2e+02 Score=22.03 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 267 KQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 267 Kq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.+-+.+|....-.++.+...|..++...++++..+..+......+|..+
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELnsm 77 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNNM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
No 482
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=26.87 E-value=94 Score=22.82 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
++|+.-...+.....+|...+..|+..+..|
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=26.72 E-value=1e+02 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 279 ETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 279 ~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+.|+.-+..|+..+..|.+++.+|+.+-..|+.+|.+.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.55 E-value=1.2e+02 Score=22.21 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECE 300 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~ 300 (340)
+-+-+.|+.|+.+.+.|...-...+..-..|..++.
T Consensus 28 lERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 28 DERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 485
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=26.54 E-value=60 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 265 LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKL 302 (340)
Q Consensus 265 ~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L 302 (340)
..+.+.+..|-.+++.|.++..+|.+++..|+++...+
T Consensus 94 ~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 94 SARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.52 E-value=2.8e+02 Score=23.01 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 245 RELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSN---------ENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 245 ~e~KR~rRk~~NRESARRSR~RKq~~leeLE~rv~~Le~---------EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+|..|-....+++++|++-=...++....++.++..+.. +-..|-.++..++.+++.-...+..+-.-.+.
T Consensus 24 ~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 24 QEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 019499 316 LC 317 (340)
Q Consensus 316 L~ 317 (340)
+.
T Consensus 104 ik 105 (119)
T 3etw_A 104 IQ 105 (119)
T ss_dssp HH
T ss_pred HH
No 487
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=26.49 E-value=3.8e+02 Score=24.62 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019499 255 SNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLC 317 (340)
Q Consensus 255 ~NRESARRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~ 317 (340)
++|...++.+.+.++-..+++.....+..+......++..+++.+..++......++.+....
T Consensus 330 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 392 (446)
T 3pik_A 330 RNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLASLQITLQRAR 392 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=26.41 E-value=3.4e+02 Score=24.01 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 261 RRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 261 RRSR~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+..+...+.....++.....++.+...+..++...++.++.+..+...++.++..
T Consensus 101 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~ 155 (301)
T 2efk_A 101 TKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAER 155 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=26.38 E-value=1.7e+02 Score=22.85 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcC
Q 019499 269 AECEELQARVETLSNENRNLRDELQRLSE--------------ECEKLTSENNSIKEDLSRLCG 318 (340)
Q Consensus 269 ~~leeLE~rv~~Le~EN~~Lr~el~~L~~--------------e~~~L~~EN~~Lk~eL~~L~g 318 (340)
..+++|+.+|..|...-.++...|-.|-+ ++-..-.+...++.+|..+..
T Consensus 15 ~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 15 EAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 490
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.25 E-value=2.4e+02 Score=22.16 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 257 RESARRSRLRKQAECEELQARVETLSNEN------RNLRDELQRLSEECEKLTSENNSIK 310 (340)
Q Consensus 257 RESARRSR~RKq~~leeLE~rv~~Le~EN------~~Lr~el~~L~~e~~~L~~EN~~Lk 310 (340)
|..+-+.=.+..++.++|=.+.+ |+..| ..|..+|...+.++..|+.+...|+
T Consensus 36 rk~~i~~ie~~l~EA~ell~qMe-lE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 36 KKQMVANVEKQLEEARELLEQMD-LEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.02 E-value=66 Score=20.77 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 278 VETLSNENRNLRDELQRLSEECEKLTS 304 (340)
Q Consensus 278 v~~Le~EN~~Lr~el~~L~~e~~~L~~ 304 (340)
+..|+.+...|..-+..|++....|+.
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=25.98 E-value=68 Score=25.37 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 272 EELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 272 eeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
++|+++++.|+.....-...+..|+..+..-..|..+|...|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDI 44 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 44 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 493
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.85 E-value=1.8e+02 Score=22.81 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 268 QAECEELQARVETLSNENRNLRD---ELQRLSEECEKLTSENNSIKEDLSR 315 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~---el~~L~~e~~~L~~EN~~Lk~eL~~ 315 (340)
+..|..|+..|+.|...+..+.. ....++++++.|..+...+-..|..
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~ 68 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
No 494
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=25.80 E-value=70 Score=24.44 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh----hhh
Q 019499 285 NRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVA----NLE 326 (340)
Q Consensus 285 N~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~~~----~L~ 326 (340)
|..|...|..|..+++.|......+.+++..+. .+.+. .|+
T Consensus 1 ~~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~-eee~~~~~~~le 45 (71)
T 1s1c_X 1 GSMLTKDIEILRRENEELTEKMKKAEEEYKLEK-EEEISNLKAAFE 45 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
No 495
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=25.73 E-value=2.1e+02 Score=25.56 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 268 QAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 268 q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
+-.+..|..++...+.=-.-|+.+-+.|..++..+..++..|+.++.+.
T Consensus 8 R~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~ 56 (223)
T 3a5c_G 8 RMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQA 56 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=25.58 E-value=24 Score=22.59 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 270 ECEELQARVETLSNENRNLRDELQRLSEE 298 (340)
Q Consensus 270 ~leeLE~rv~~Le~EN~~Lr~el~~L~~e 298 (340)
.+..||+++..|+..+..-.+++..|.++
T Consensus 1 qiaaleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 1 QIAALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp -CHHHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHc
No 497
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.58 E-value=2e+02 Score=21.00 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019499 273 ELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRL 316 (340)
Q Consensus 273 eLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L 316 (340)
.|=.-|=.|+.+..+|++++..|++-++.-..--..|..-+.++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=25.54 E-value=1.2e+02 Score=27.56 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 019499 243 DERELKRQKRKQSNRESARRSR-LRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEA 321 (340)
Q Consensus 243 DE~e~KR~rRk~~NRESARRSR-~RKq~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~L~~EN~~Lk~eL~~L~g~~~ 321 (340)
++.|.++-+|-..--+.-.|.| .+=.+++++++.++..|.. ..=+.-+...++.+..|+.|+..-+.+|...+-...
T Consensus 16 ~~~EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~k--adkk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~qRV 93 (211)
T 3umh_A 16 DENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK--ADKKAVIQHFQEKVESLEQEAANERQQLVETHMARV 93 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 019499 322 VANL 325 (340)
Q Consensus 322 ~~~L 325 (340)
...|
T Consensus 94 ~a~l 97 (211)
T 3umh_A 94 EAML 97 (211)
T ss_dssp HHHH
T ss_pred HHHH
No 499
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.52 E-value=99 Score=20.92 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019499 286 RNLRDELQRLSEECEKLTSENNSIKEDL 313 (340)
Q Consensus 286 ~~Lr~el~~L~~e~~~L~~EN~~Lk~eL 313 (340)
.+.+.+|..|+.+++.|+.|...|=-+|
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 500
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=25.42 E-value=1.8e+02 Score=29.64 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 019499 256 NRESARRSRLRK------QAECEELQARVETLSNENRNLRDELQRLSEECEK---------------------------- 301 (340)
Q Consensus 256 NRESARRSR~RK------q~~leeLE~rv~~Le~EN~~Lr~el~~L~~e~~~---------------------------- 301 (340)
|-+..+++-.|| -+++.+|..+...|..+.+.|+.+.+.+.+++-+
T Consensus 15 n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (522)
T 3vbb_A 15 DPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADA 94 (522)
T ss_dssp CHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhh
Q ss_pred ---------------HHHHHHHHHHHHHHhcCchhhhhhhhcCCC--CCCCcccCC
Q 019499 302 ---------------LTSENNSIKEDLSRLCGPEAVANLEQSNPT--QSCGEEENS 340 (340)
Q Consensus 302 ---------------L~~EN~~Lk~eL~~L~g~~~~~~L~~~~~~--~~~~~~~~~ 340 (340)
|..+...|.+++..+. ..+..+...+|. +..+-.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~--~~~~~~l~~iPN~~~~~vP~g~~ 148 (522)
T 3vbb_A 95 LANLKVSQIKKVRLLIDEAILKCDAERIKLE--AERFENLREIGNLLHPSVPISND 148 (522)
T ss_dssp HHTTCSSSHHHHHHHHHHSCCCCHHHHHHHH--HHHHHHGGGSCCCCCTTSCCCSC
T ss_pred hhhhhhHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCCCCCCCCCC
Done!