BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019500
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
Length = 305
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/305 (60%), Positives = 217/305 (71%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EAK
Sbjct: 9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPF VVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 69 QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F DC+ F+ DP T +AA +K+ + KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 249 TAPPGRRMGHA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 334 KQRGL 338
++R +
Sbjct: 300 EKRKM 304
>pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 311
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/305 (60%), Positives = 217/305 (71%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EAK
Sbjct: 15 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPF VVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 75 QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F DC+ F+ DP T +AA +K+ + KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 255 TAPPGRRMGHA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 334 KQRGL 338
++R +
Sbjct: 306 EKRKM 310
>pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/298 (58%), Positives = 202/298 (67%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 286
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/296 (58%), Positives = 201/296 (67%), Gaps = 11/296 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 286
>pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPI|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 305
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 216/305 (70%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EAK
Sbjct: 9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 68
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPF VVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 69 QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 129 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 188
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F DC+ F+ DP T +AA +K+ + KP+V+FIAGL
Sbjct: 189 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 248
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMG A AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 249 TAPPGRRMGXA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 299
Query: 334 KQRGL 338
++R +
Sbjct: 300 EKRKM 304
>pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 311
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 216/305 (70%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EAK
Sbjct: 15 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 74
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPF VVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 75 QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 134
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 135 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 194
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F DC+ F+ DP T +AA +K+ + KP+V+FIAGL
Sbjct: 195 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 254
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMG A AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 255 TAPPGRRMGXA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 305
Query: 334 KQRGL 338
++R +
Sbjct: 306 EKRKM 310
>pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|D Chain D, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|D Chain D, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 327 bits (839), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNVPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 174/298 (58%), Positives = 201/298 (67%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1SCU|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|D Chain D, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
Length = 288
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 200/298 (67%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMG A AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|D Chain D, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 288
Score = 306 bits (785), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 172/298 (57%), Positives = 199/298 (66%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNAPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMG A AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|D Chain D, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|F Chain F, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|H Chain H, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
Length = 288
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/298 (57%), Positives = 199/298 (66%), Gaps = 11/298 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF ++ ITEGIP DM+ VK L+ ++ R++G
Sbjct: 62 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGD
Sbjct: 121 PNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G+NF+D + F DPQT +AAA IKE T KP+V +IAG+TAP
Sbjct: 181 PIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
G+RMG A AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 KGKRMGXA---------GAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
>pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Aeropyrum Pernix K1
Length = 297
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/290 (47%), Positives = 177/290 (61%), Gaps = 11/290 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
V VD TRV+ QGITG+ G+FH + +EYGTK+V GVTP KGG+E G+PV+++V EA A
Sbjct: 8 VLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALA 67
Query: 97 ET-KANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
E + N S ++VP PF VV ITEGIP HD +R Q ++
Sbjct: 68 EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGATII 126
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPG I PG+ K+GIMPG+I K G + +VSRSGTLTYE + T G+GQST +GIGG
Sbjct: 127 GPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGG 186
Query: 216 DPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA 275
DP G +F + + F DPQT AA +IK+ KP++A+IAG TA
Sbjct: 187 DPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTA 246
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
PP +RMGHAG AI+ G GT + K+K LREAGV V E+P ++
Sbjct: 247 PPEKRMGHAG---------AIIMMGTGTYEGKVKALREAGVEVAETPFEV 287
>pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain
From Methanocaldococcus Jannaschii Dsm 2661
Length = 294
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 168/289 (58%), Gaps = 12/289 (4%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF+TV EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
ET ANAS I+VP PF +V ITE IP HD + +++G
Sbjct: 68 ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIG 126
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PG+ P K+GI+P + K G +G+VSRSGTLTYE Q G G STCVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P G + + + F D +T +AA I++ +KP++ +IAG +AP
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAP 244
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
G+RMGHAG AIV GKGTA+ K+K L EAG V ++ + I
Sbjct: 245 EGKRMGHAG---------AIVEKGKGTAESKMKALEEAGAYVAKNISDI 284
>pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|D Chain D, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|F Chain F, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|H Chain H, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 296
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/289 (46%), Positives = 175/289 (60%), Gaps = 11/289 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ V+K TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2 ILVNKETRVLVQGITGREGQFHTKQMLSYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+ +AS I+VP P +V ITEGIP DMVR + +RL+G
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
NCPG+I E KIGIMPG++ K GR+GI+SRSGTLTYEA + GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P GT F D + F DP+T +AAA +K+ +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
G+RMGHAG AI+ G GT + K++ EAG+ V ++ +I
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279
>pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha
Subunit From Thermus Thermophilus
Length = 288
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 175/289 (60%), Gaps = 11/289 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97 ETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+ +AS I+VP P +V ITEGIP DMVR + +RL+G
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
NCPG+I E KIGIMPG++ K GR+GI+SRSGTLTYEA + GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTAP 276
P GT F D + F DP+T +AAA +K+ +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
G+RMGHAG AI+ G GT + K++ EAG+ V ++ +I
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279
>pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 335
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
+ I EGIP+ + R +Q ++GP G IKPG KIG I+ ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
+PG + VSRSG ++ E + G V IGGD + G+ F+D V ++ P
Sbjct: 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
IKE KPIV + G A + GHAG A
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------A 277
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
+ TA K + L+EAGV V S ++G + V++
Sbjct: 278 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 317
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
+ I EGIP+ + R +Q ++GP G IKPG KIG I+ ++
Sbjct: 594 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLY 652
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
+PG + VSRSG ++ E + G V IGGD + G+ F+D V ++ P
Sbjct: 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKM 712
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
IKE KPIV + G A + GHAG A
Sbjct: 713 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAG---------A 763
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
+ TA K + L+EAGV V S ++G + V++
Sbjct: 764 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 803
>pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 334
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 21/220 (9%)
Query: 127 VVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIH 178
+ I EGIP+ + R +Q ++GP G IKPG KIG I+ ++
Sbjct: 108 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGXLDNILASKLY 166
Query: 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTXX 238
+PG + VSRSG + E + G V IGGD + G+ F D V ++ P
Sbjct: 167 RPGSVAYVSRSGGXSNELNNIISRTTDGVYEGVAIGGDRYPGSTFXDHVLRYQDTPGVKX 226
Query: 239 XXXXXXXXXXXXXDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSA 295
IKE KPIV + G A + GHAG A
Sbjct: 227 IVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATXFSSEVQFGHAG---------A 277
Query: 296 IVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
+ TA K + L+EAGV V S ++G + V++
Sbjct: 278 CANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYED 317
>pdb|2CSU|A Chain A, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
pdb|2CSU|B Chain B, Crystal Structure Of Ph0766 From Pyrococcus Horikoshii Ot3
Length = 457
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 153 RLVGPNCPGVIKPGECKIGIMPGYI--HKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 210
R++GPNC G+ + + +I K G + +S+SG L V++T +G S
Sbjct: 123 RIIGPNCVGIXN---THVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKF 179
Query: 211 VGIGGDPFNGTNFVDCVTKFIADPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPIVAFI 270
+ +G +F + + +++AD + + K +KPI+A
Sbjct: 180 ISVGNXA--DVDFAE-LXEYLADTEEDKAIALYIEGVRNGKKFXEVAKRVTKKKPIIALK 236
Query: 271 AGLTAPPGR 279
AG + R
Sbjct: 237 AGKSESGAR 245
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLRE-------AGVTVVESPAKIG 326
+ P R+ GV YTI+ ++ G+ +D K L+E A VE K
Sbjct: 14 STPYTSRIEKQGVTAYTIYNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDS 73
Query: 327 AAMLEVFKQRGLTK 340
A ++++ R L+K
Sbjct: 74 AELVQLMTCRDLSK 87
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC 226
++++ R + ++GT+ + + G G C+ FNGT DC
Sbjct: 463 WVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNGTCIADC 513
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 160 PGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFN 219
P + K E K+ ++++ R + ++GT+ + + G G C+ FN
Sbjct: 452 PAIQKEPEQKV-----WVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFN 506
Query: 220 GTNFVDC 226
GT DC
Sbjct: 507 GTCIADC 513
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 160 PGVIKPGECKIGIMPGYIHKPGRIGIVS--RSGTLTYEAVF-QTTAVGLGQSTCVGI 213
P + PG IG PG+++ P G + +SGTL E++F Q T+ L QS +G+
Sbjct: 342 PKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENL-QSKTIGL 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,822,098
Number of Sequences: 62578
Number of extensions: 330433
Number of successful extensions: 769
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 29
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)