BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019500
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/318 (87%), Positives = 294/318 (92%), Gaps = 9/318 (2%)
Query: 23 QSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH 82
QSRSF T PPP AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEH
Sbjct: 33 QSRSFGTTPPPPAAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEH 92
Query: 83 LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRV 142
LGLPVFNTVAEAKAETKANAS IYVP PFAAAAI+E + AELDL+VCITEGIPQHDMVRV
Sbjct: 93 LGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRV 152
Query: 143 KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTA 202
KAALN+QSKTRL+GPNCPG+IKPGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTA
Sbjct: 153 KAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTA 212
Query: 203 VGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT 262
VGLGQSTCVGIGGDPFNGTNFVDC+ KF DPQTEGI+LIGEIGGTAEEDAAALIKE+GT
Sbjct: 213 VGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGT 272
Query: 263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
+KP+VAFIAGLTAPPGRRMGHAG AIVSGGKGTAQDKIK+LR+AGV VVESP
Sbjct: 273 DKPVVAFIAGLTAPPGRRMGHAG---------AIVSGGKGTAQDKIKSLRDAGVKVVESP 323
Query: 323 AKIGAAMLEVFKQRGLTK 340
AKIGAAM E+F++RGL K
Sbjct: 324 AKIGAAMFELFQERGLLK 341
>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Solanum lycopersicum GN=SCOA PE=1 SV=1
Length = 332
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 284/342 (83%), Positives = 301/342 (88%), Gaps = 15/342 (4%)
Query: 1 MARQVSSRVVR-SLYMSS---EICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGT 56
MARQ + + S +SS C + + A PPA VFVDKNTRVICQGITGKNGT
Sbjct: 1 MARQATKLIANLSKKLSSSNPHTRCSEQTVWIGAAPPA--VFVDKNTRVICQGITGKNGT 58
Query: 57 FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116
FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV EAKAETKANAS IYVPPPFAAAAI
Sbjct: 59 FHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVEEAKAETKANASVIYVPPPFAAAAI 118
Query: 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
+E +EAELDL+VCITEGIPQHDMVRVKAAL QS+TRL+GPNCPG+IKPGECKIGIMPGY
Sbjct: 119 MEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSRTRLIGPNCPGIIKPGECKIGIMPGY 178
Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ KFIADPQT
Sbjct: 179 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFIADPQT 238
Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAI 296
EGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAG AI
Sbjct: 239 EGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAG---------AI 289
Query: 297 VSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 338
VSGGKGTAQDKIK L+EAGVTV ESPAKIG +MLEVFKQRGL
Sbjct: 290 VSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/356 (78%), Positives = 304/356 (85%), Gaps = 26/356 (7%)
Query: 1 MARQVSSRVVRSLYMSSEICCG----------------QSRSFTTAPPPAPAVFVDKNTR 44
M+RQV+ R++ SL + C QSRSF + P P AVFVDKNTR
Sbjct: 1 MSRQVA-RLIGSLSSKARRCSTGGSEVFPSCQSLTSLTQSRSFASDPHPPAAVFVDKNTR 59
Query: 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASA 104
V+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKA+TKANAS
Sbjct: 60 VLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASV 119
Query: 105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164
IYVP PFAAAAI+E +EAELDL+VCITEGIPQHDMVRVK ALN+QSKTRL+GPNCPG+IK
Sbjct: 120 IYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIK 179
Query: 165 PGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 224
PGECKIGIMPGYIHKPG+IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV
Sbjct: 180 PGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFV 239
Query: 225 DCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHA 284
DC+ KF DPQTEGI+LIGEIGGTAEEDAAALIK SGTEKP+VAFIAGLTAPPGRRMGHA
Sbjct: 240 DCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASGTEKPVVAFIAGLTAPPGRRMGHA 299
Query: 285 GVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 340
G AIVSGGKGTAQDKIK+L +AGV VVESPAKIG+AM E+F++RGL K
Sbjct: 300 G---------AIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYELFQERGLLK 346
>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Solanum lycopersicum PE=1 SV=1
Length = 337
Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust.
Identities = 287/347 (82%), Positives = 306/347 (88%), Gaps = 20/347 (5%)
Query: 1 MARQVSSRVVRSLY---------MSSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGIT 51
MARQ ++R++ +L MS+ Q R F + PPP PAVFVDKNTRVICQGIT
Sbjct: 1 MARQ-ATRLISNLSTKLNPSSPTMSASPLWHQYRYFGSPPPP-PAVFVDKNTRVICQGIT 58
Query: 52 GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111
GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK ETKANAS +YVPPPF
Sbjct: 59 GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKVETKANASVVYVPPPF 118
Query: 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIG 171
AAAAI+EAMEAELDLVVCITEGIPQHDMVRVKAAL Q +TRL+GPNCPG+IKPGECKIG
Sbjct: 119 AAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALKKQLRTRLIGPNCPGIIKPGECKIG 178
Query: 172 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFI 231
IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDC+ +FI
Sbjct: 179 IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLERFI 238
Query: 232 ADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTI 291
ADPQTEGI+LIGEIGGTAEEDAAALIKESGT+KP+VAFIAGLTAPPGRRMGHAG
Sbjct: 239 ADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIAGLTAPPGRRMGHAG------ 292
Query: 292 FGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 338
AIVSGGKGTAQDKIK L+EAGVTV ESPAKIG ML+VFKQRGL
Sbjct: 293 ---AIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVTMLDVFKQRGL 336
>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0577700 PE=1 SV=1
Length = 331
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/306 (88%), Positives = 287/306 (93%), Gaps = 9/306 (2%)
Query: 33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA 92
P+PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFN+VA
Sbjct: 33 PSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVA 92
Query: 93 EAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT 152
EAKAETKANAS IYVPPPFAAAAI+EAMEAELDLVVCITEGIPQHDMV+VKAALN QSKT
Sbjct: 93 EAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKT 152
Query: 153 RLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212
RL+GPNCPG+IKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAVFQTTAVGLGQSTCVG
Sbjct: 153 RLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212
Query: 213 IGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAG 272
IGGDPFNGTNFVDC+ KF+ DPQTEGI+LIGEIGGTAEEDAAA I+ES T+KP+VAFIAG
Sbjct: 213 IGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKTQKPVVAFIAG 272
Query: 273 LTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
LTAPPGRRMGHAG AIVSGGKGTAQDKIK LREAGVTVVESPAKIG+ M E+
Sbjct: 273 LTAPPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGSTMFEI 323
Query: 333 FKQRGL 338
FKQRG+
Sbjct: 324 FKQRGM 329
>sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1
Length = 292
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/300 (69%), Positives = 244/300 (81%), Gaps = 10/300 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+NTV EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP DMV+VK AL SKTRL+
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNFVDC+ F+ D +T+ II+IGEIGG AEEDAA IK+S +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI++GGKG+A+DK++ L+ AGVT+ SPA IG M ++ +
Sbjct: 241 PPGKRMGHAG---------AIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291
>sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
bellii (strain RML369-C) GN=sucD PE=3 SV=1
Length = 291
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/299 (68%), Positives = 243/299 (81%), Gaps = 10/299 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ V+K T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGG HL LP++NTV EAK
Sbjct: 2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A+T ANAS IYVPPPFAA +ILEA++A +++VVCITEGIP DMVRVK AL S+TRL+
Sbjct: 62 AKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALVG-SRTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPG+I P ECKIGIMPG+IH+ G IGIVSRSGTLTYEAV QTTAVGLGQSTCVGIGG
Sbjct: 121 GPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNFVDC+ F+ D +T+ II+IGEIGG AEE+AA IK S +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
PPG+RMGHAG AI++GGKG+A+DK++ L+ AGVT+ SPA IG ML++
Sbjct: 241 PPGKRMGHAG---------AIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMLDLLN 290
>sp|Q9AKE1|SUCD_RICTY Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=sucD PE=3 SV=1
Length = 292
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 244/300 (81%), Gaps = 10/300 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+NTV EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP DMV+VK AL SKTRL+
Sbjct: 62 AKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRALIG-SKTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGT+FV+C+ F+ D +T+ II+IGEIGG AEEDAA IK+S +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
P +RMGHAG AI+SGGKG+A+DK++ L+ AGVT+ +SPA IG ML++ +
Sbjct: 241 PSDKRMGHAG---------AIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNK 291
>sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3
SV=1
Length = 292
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/300 (68%), Positives = 241/300 (80%), Gaps = 10/300 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+NTV EAK
Sbjct: 2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A+T ANAS IYVPP FAA +ILEA++AE+++VVCITEGIP DMV+VK AL SKTRL+
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTAVGLGQSTC+GIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNFVDC+ F+ D +T+ II+IGEIGG AEEDAA IK+S +KPIV+FIAG+TA
Sbjct: 181 DPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+ G G+A+DK++ L+ AGV + SPA IG ML++ +
Sbjct: 241 PPGKRMGHAG---------AIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291
>sp|O08371|SUCD_RICPR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia
prowazekii (strain Madrid E) GN=sucD PE=3 SV=1
Length = 292
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/300 (67%), Positives = 242/300 (80%), Gaps = 10/300 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ ++K T+VICQG TG GTFH+EQAI YGT MVGGVTP KGG HL LPV+NTV EAK
Sbjct: 2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A+T ANAS IYVPP FAA +ILEA++A++++VVCITEGIP DM++VK AL SKTRL+
Sbjct: 62 AKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALIG-SKTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IHK G IGIVSRSGTLTYEAV QTTA GLGQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGT+FVDC+ F+ D +T+ II+IGEIGG+AEEDAA IK+S +KPIV+FIAG+TA
Sbjct: 181 DPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
P +RMGHAG AI+SGGKG+A+DK++ L+ AGV + SPA IG ML++ +
Sbjct: 241 PADKRMGHAG---------AIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNK 291
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=scsA PE=1 SV=3
Length = 315
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/312 (69%), Positives = 256/312 (82%), Gaps = 13/312 (4%)
Query: 25 RSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG 84
R F+T P +V ++K+T+VICQG TG GTFH++QAIEYGT MVGGV+P KGG +HL
Sbjct: 14 RFFSTKP----SVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLD 69
Query: 85 LPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKA 144
LPVFNTV EAK T ANA+ IYVPPP AAAAI EA++AE++LVVCITEGIPQ DMV+VK
Sbjct: 70 LPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKY 129
Query: 145 ALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVG 204
LN Q+KTRL+GPNCPG+IKPGECKIGIMPG+IHKPG+IGIVSRSGTLTYEAV QTTAVG
Sbjct: 130 LLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVG 189
Query: 205 LGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEK 264
LGQSTC+GIGGDPFNGTNF+DC+ F DPQTEGIILIGEIGG AEE+AA + ++ T+K
Sbjct: 190 LGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDK 249
Query: 265 PIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAK 324
P+V+FIAGL+APPGRRMGHAG AI+SGGKG A KI+ L+ AGVTV SPAK
Sbjct: 250 PVVSFIAGLSAPPGRRMGHAG---------AIISGGKGDANSKIEALKAAGVTVTFSPAK 300
Query: 325 IGAAMLEVFKQR 336
+G +L+ ++
Sbjct: 301 LGETILQKMNEK 312
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2
Length = 346
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/305 (68%), Positives = 247/305 (80%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK
Sbjct: 50 IYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKE 109
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIG 169
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPG+I PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct: 170 PNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGL 273
PFNGTNF+DC+ F+ DP TEGI+LIGEIGG AEE+AA +KE + KP+V+FIAG+
Sbjct: 230 PFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGI 289
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G M + F
Sbjct: 290 TAPPGRRMGHA---------GAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEF 340
Query: 334 KQRGL 338
++R +
Sbjct: 341 EKRKM 345
>sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment)
OS=Columba livia GN=SUCLG1 PE=1 SV=1
Length = 306
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/305 (68%), Positives = 249/305 (81%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+++ KNT+VICQG TGK GTFH++QA++YGT +VGG++P KGG HLGLPVFN+V EAK
Sbjct: 10 LYISKNTKVICQGFTGKQGTFHSQQALDYGTNLVGGISPGKGGKTHLGLPVFNSVKEAKE 69
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A+A+ IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK L Q KTRLVG
Sbjct: 70 QTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMVRVKHRLVRQDKTRLVG 129
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QT+ VGLGQS C+GIGGD
Sbjct: 130 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTSQVGLGQSLCIGIGGD 189
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGL 273
PFNGTNF+DC+ F+ DP TEGIILIGEIGG AEEDAAA +KE+ + KP+V+FIAGL
Sbjct: 190 PFNGTNFIDCLDVFLKDPHTEGIILIGEIGGNAEEDAAAFLKENNSGPNAKPVVSFIAGL 249
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G+ + + F
Sbjct: 250 TAPPGRRMGHA---------GAIIAGGKGGAKEKIAALQNAGVVVSMSPAQLGSTIYKEF 300
Query: 334 KQRGL 338
++R L
Sbjct: 301 EKRKL 305
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=3
SV=1
Length = 322
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/298 (67%), Positives = 237/298 (79%), Gaps = 12/298 (4%)
Query: 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAET 98
++K+T+VI QG TGK GTFH +Q +EY TK+VGGV K GTEHLGLPVF V+EA+ +T
Sbjct: 30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKT 89
Query: 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158
A+AS IYVP A +AI EAM+AE+ LVVCITEGIPQHDMVRVK+ L Q+KTRLVGPN
Sbjct: 90 GADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPN 149
Query: 159 CPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF 218
CPG+I +CKIGIMPG+IHK G IGIVSRSGTLTYEAV QTT VG GQ+ CVGIGGDPF
Sbjct: 150 CPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPF 209
Query: 219 NGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGLTA 275
NGTNF+DC+ F+ DP+T+GIILIGEIGG+AEE+AAA +KE + KP+V+FIAG+TA
Sbjct: 210 NGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTA 269
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
PPGRRMGHAG AI+SGGKGTA DKI LREAGV V +SPAK+G +M F
Sbjct: 270 PPGRRMGHAG---------AIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATAF 318
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Mus musculus GN=Suclg1 PE=1 SV=4
Length = 346
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/305 (68%), Positives = 247/305 (80%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFNTV EAK
Sbjct: 50 IYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKE 109
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK L Q TRL+G
Sbjct: 110 KTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIG 169
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS C+GIGGD
Sbjct: 170 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGD 229
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F+DC+ F+ DP TEGIILIGEIGG AEE+AAA +KE + KP+V+FIAG+
Sbjct: 230 PFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGI 289
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 290 TAPPGRRMGHA---------GAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEF 340
Query: 334 KQRGL 338
++R +
Sbjct: 341 EKRKM 345
>sp|P80865|SUCD_BACSU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus
subtilis (strain 168) GN=sucD PE=1 SV=3
Length = 300
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/303 (63%), Positives = 232/303 (76%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF++K+TRVI QGITG FHT+Q +EYGT +VGGVTP KGGTE G+PVFNTVAEA
Sbjct: 2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
T ANAS IYVP PFAA AI+EA++AELDLV+CITE IP DMV+VK + + KTRL+
Sbjct: 62 QTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI P ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q + G+GQST VGIGG
Sbjct: 121 GPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F DP T +I+IGEIGGTAEE+AA +K + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWVKANMT-KPVVGFIGGKTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA +KIKTL G+ V E+P+ +G +++V K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTADEKIKTLNACGIEVAETPSVMGETLIKVLKE 290
Query: 336 RGL 338
+ L
Sbjct: 291 KNL 293
>sp|P53591|SUCD_COXBU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=sucD
PE=3 SV=2
Length = 294
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 230/296 (77%), Gaps = 10/296 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG HLGLP+FN+V EA
Sbjct: 2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A+A+ I+VP PF +I+EA++A + LVVCITEGIP DM+ VKA L R++
Sbjct: 62 EETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMI 121
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IH+ G++GIVSRSGTLTYEAV QTT +G GQSTCVGIGG
Sbjct: 122 GPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTTQMGFGQSTCVGIGG 181
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP GT+F+D + F D QT+ I+++GEIGGTAEE+AA I +S +KP++++IAG+TA
Sbjct: 182 DPIPGTSFIDVLEMFEKDSQTQAIVMVGEIGGTAEEEAAEFI-QSNVKKPVISYIAGVTA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 331
PPG+RMGHAG AI++GGKGTA DK L AGV VV+SPA+IG + E
Sbjct: 241 PPGKRMGHAG---------AIIAGGKGTAADKYAALEAAGVFVVKSPAEIGKGVAE 287
>sp|P0AGE9|SUCD_ECOLI Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
(strain K12) GN=sucD PE=1 SV=2
Length = 289
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/299 (64%), Positives = 227/299 (75%), Gaps = 11/299 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A T A AS IYVP PF +ILEA++A + L++ ITEGIP DM+ VK L+ ++ R++
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G+NF+D + F DPQTE I++IGEIGG+AEE+AAA IKE T KP+V +IAG+TA
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
P G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 PKGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|P0AGF0|SUCD_ECOL6 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sucD PE=3
SV=2
Length = 289
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/299 (64%), Positives = 227/299 (75%), Gaps = 11/299 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A T A AS IYVP PF +ILEA++A + L++ ITEGIP DM+ VK L+ ++ R++
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G+NF+D + F DPQTE I++IGEIGG+AEE+AAA IKE T KP+V +IAG+TA
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
P G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 PKGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|P0AGF1|SUCD_ECO57 Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli
O157:H7 GN=sucD PE=3 SV=2
Length = 289
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/299 (64%), Positives = 227/299 (75%), Gaps = 11/299 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA
Sbjct: 2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
A T A AS IYVP PF +ILEA++A + L++ ITEGIP DM+ VK L+ ++ R++
Sbjct: 62 AATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G+NF+D + F DPQTE I++IGEIGG+AEE+AAA IKE T KP+V +IAG+TA
Sbjct: 181 DPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
P G+RMGHAG AI++GGKGTA +K L AGV V S A IG A+ V K
Sbjct: 240 PKGKRMGHAG---------AIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289
>sp|Q9P727|SUCA_NEUCR Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=8D4.130 PE=3 SV=1
Length = 333
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/321 (61%), Positives = 240/321 (74%), Gaps = 16/321 (4%)
Query: 25 RSFTTAPPPAPAVF----VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT 80
R++++ P A ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG PKK G
Sbjct: 21 RAYSSNSSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQ 80
Query: 81 EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMV 140
HL PVF+ V+EA ET A A+AI+VPPP AAA I EA++AE+ L VCITEGIPQHDMV
Sbjct: 81 THLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMV 140
Query: 141 RVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQT 200
R+ + L QSKTRLVGPNCPG+I PG+CKIGIMPG+IHK GRIGIVSRSGTLTYEAV QT
Sbjct: 141 RITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQT 200
Query: 201 TAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES 260
T GLGQS VGIGGDPF+GTNF+DC+ F+ D T+GII+IGEIGG+AEE+AA +KE
Sbjct: 201 TQAGLGQSLVVGIGGDPFSGTNFIDCLKVFLEDGDTDGIIMIGEIGGSAEEEAADFLKEY 260
Query: 261 GTE---KPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVT 317
T+ KP+V+FIAG++APPGRRMGHAG AIV+GGKG A KIK L AGV
Sbjct: 261 NTKNGGKPVVSFIAGISAPPGRRMGHAG---------AIVAGGKGGADSKIKALEAAGVV 311
Query: 318 VVESPAKIGAAMLEVFKQRGL 338
V SPA +G A+ + F +R L
Sbjct: 312 VERSPASLGKALRDEFVRRDL 332
>sp|Q51567|SUCD_PSEAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=sucD PE=3 SV=2
Length = 295
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/297 (63%), Positives = 225/297 (75%), Gaps = 11/297 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+V ++K+T+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA
Sbjct: 2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
T A AS IYVP PF +ILEA + L+VCITEGIP DM+ K + + RL+
Sbjct: 62 EATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCD-ELGVRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PGECKIGIMPG+IH PG++GIVSRSGTLTYEAV QTT G GQSTCVGIGG
Sbjct: 121 GPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G+NF+D + F DPQTE I++IGEIGG+AEE+AAA IK + T KP+V++IAG+TA
Sbjct: 181 DPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIKANVT-KPVVSYIAGVTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
PPG+RMGHAG AI+SGGKGTA +K L++AGV V S A IG A+ E+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAEL 287
>sp|P99070|SUCD_STAAN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain N315) GN=sucD PE=1 SV=1
Length = 302
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|P66866|SUCD_STAAM Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1
Length = 302
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q5HGI6|SUCD_STAAC Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain COL) GN=sucD PE=3 SV=1
Length = 302
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q6GHI9|SUCD_STAAR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=sucD PE=3 SV=1
Length = 302
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q8NX01|SUCD_STAAW Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=sucD PE=3 SV=1
Length = 302
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q6G9W7|SUCD_STAAS Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=sucD PE=3 SV=1
Length = 302
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/303 (61%), Positives = 228/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFNTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET A S IYVP PFAA +ILEA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IK + T KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++KIKTL GV +P++IG+ ++E K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKE 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q58DR8|SUCA_BOVIN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Bos taurus GN=SUCLG1 PE=2 SV=3
Length = 346
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 213/316 (67%), Positives = 249/316 (78%), Gaps = 15/316 (4%)
Query: 26 SFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL 85
S+TT+ ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG HLGL
Sbjct: 42 SYTTS---RKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGL 98
Query: 86 PVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAA 145
PVFNTV EAK +T A AS IYVPPPFA AAI EA+EAE+ LVVCITEGIPQ DMVRVK
Sbjct: 99 PVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHK 158
Query: 146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
L Q KTRLVGPNCPGVI PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGL
Sbjct: 159 LLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGL 218
Query: 206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT--- 262
GQS CVGIGGDPFNGT+F DC+ F+ DP TEGIILIGEIGG AEE+AA +K+ +
Sbjct: 219 GQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPK 278
Query: 263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
KP+V+FIAGLTAPPGRRMGHA AI++GGKG A++KI L+ AGV V SP
Sbjct: 279 AKPVVSFIAGLTAPPGRRMGHA---------GAIIAGGKGGAKEKIAALQSAGVVVSMSP 329
Query: 323 AKIGAAMLEVFKQRGL 338
A++G M + F++R +
Sbjct: 330 AQLGTTMYKEFEKRKM 345
>sp|Q5HPU4|SUCD_STAEQ Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3
SV=1
Length = 302
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/303 (60%), Positives = 229/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+NTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET AN S +YVP PFAA +I+EA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IKE+ KP+V FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN-MNKPVVGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA +KIKTL + GV ++P++IG +++ K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKK 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|P45102|SUCD_HAEIN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=sucD PE=3 SV=1
Length = 293
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/299 (61%), Positives = 230/299 (76%), Gaps = 11/299 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ +DKNT+VICQG TG GTFH+EQA+ YGT++VGGV+P KGGT HLGLPVFNTV EA
Sbjct: 2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
T A+ IYVP F AI+EA++A + L+VCITEGIP DM++VK LN ++ ++
Sbjct: 62 ENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI P ECKIGIMP +IHK G++GIVSRSGTLTYEAV QTT G GQSTCVGIGG
Sbjct: 121 GPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTTDEGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G++F+D + +F DP+TE I++IGEIGG+AEE+AA IK++ T KP+VA+IAG+TA
Sbjct: 181 DPIPGSSFIDILERFQQDPETEAIVMIGEIGGSAEEEAAIFIKDNVT-KPVVAYIAGITA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
P G+RMGHAG AI+SGGKGTA +KI L AGVT V+S A+IG A+ ++ K
Sbjct: 240 PKGKRMGHAG---------AIISGGKGTAVEKIAALEAAGVTCVKSLAEIGEALRKLLK 289
>sp|Q8CPH4|SUCD_STAES Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1
Length = 302
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/303 (59%), Positives = 229/303 (75%), Gaps = 11/303 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
+VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+NTV EAK
Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAK 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET AN S +YVP PFAA +I+EA +A+LD+V+CITE IP DMV+VK L + KTRLV
Sbjct: 62 NETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLV 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI ECKIGIMPGYIHK G +G+VSRSGTLTYEAV Q T G+GQ+T VGIGG
Sbjct: 121 GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F D +T+ +++IGEIGGTAEE+AA IKE+ KP++ FI G TA
Sbjct: 181 DPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN-MNKPVIGFIGGQTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA +KIKTL + GV ++P++IG +++ K+
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKK 290
Query: 336 RGL 338
G+
Sbjct: 291 AGI 293
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3
Length = 328
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/303 (66%), Positives = 246/303 (81%), Gaps = 12/303 (3%)
Query: 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAET 98
++ ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF +VAEAK T
Sbjct: 34 LNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKAT 93
Query: 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158
+A+ IYVPPP AAAAI+EA+EAE+ L+VCITEG+PQHDMV+VK AL +QSK+RLVGPN
Sbjct: 94 DPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPN 153
Query: 159 CPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF 218
CPG+I P +CKIGIMPG+IHK G+IG+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPF
Sbjct: 154 CPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPF 213
Query: 219 NGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGLTA 275
NGT+F+DC+ F+ DP+T+GIILIGEIGG AEE AA + E + KP+V+FIAG++A
Sbjct: 214 NGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLTEYNSGIKAKPVVSFIAGVSA 273
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPGRRMGHAG AI+SGGKG A DKI L +AGV V SPAK+G + + K+
Sbjct: 274 PPGRRMGHAG---------AIISGGKGGANDKIAALEKAGVIVTRSPAKMGHELFKEMKR 324
Query: 336 RGL 338
L
Sbjct: 325 LEL 327
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Sus scrofa GN=SUCLG1 PE=1 SV=2
Length = 346
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/305 (68%), Positives = 244/305 (80%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EAK
Sbjct: 50 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKE 109
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 110 QTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 169
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 170 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 229
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F DC+ F+ DP TEGIILIGEIGG AEE+AA +K+ + KP+V+FIAGL
Sbjct: 230 PFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGL 289
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 290 TAPPGRRMGHA---------GAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEF 340
Query: 334 KQRGL 338
++R +
Sbjct: 341 EKRKM 345
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
OS=Homo sapiens GN=SUCLG1 PE=1 SV=4
Length = 346
Score = 361 bits (927), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 210/305 (68%), Positives = 245/305 (80%), Gaps = 12/305 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG HLGLPVFNTV EAK
Sbjct: 50 LYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKE 109
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+T A AS IYVPPPFAAAAI EA+EAE+ LVVCITEGIPQ DMVRVK L Q KTRL+G
Sbjct: 110 QTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIG 169
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGD
Sbjct: 170 PNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGD 229
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT---EKPIVAFIAGL 273
PFNGT+F+DC+ F+ D TEGIILIGEIGG AEE+AA +K+ + KP+V+FIAGL
Sbjct: 230 PFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGL 289
Query: 274 TAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
TAPPGRRMGHA AI++GGKG A++KI L+ AGV V SPA++G + + F
Sbjct: 290 TAPPGRRMGHA---------GAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEF 340
Query: 334 KQRGL 338
++R +
Sbjct: 341 EKRKM 345
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC16E8.17c PE=3 SV=1
Length = 331
Score = 343 bits (879), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 189/301 (62%), Positives = 228/301 (75%), Gaps = 13/301 (4%)
Query: 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG PKK GT HLG PVF T+ EA
Sbjct: 33 PNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEA 92
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
ETKA+ASA++VPPP AA AI EA+ AE+ L+V ITEGIPQHDM+RV L QSK+RL
Sbjct: 93 MKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRL 152
Query: 155 VGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 214
VGPNCPG+I+PG+CKIGIMP +IHKPG IGIVSRSGTLTYEAV QTT LGQS +GIG
Sbjct: 153 VGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIG 212
Query: 215 GDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG----TEKPIVAFI 270
GDPF GTNF+D + F+ DP T+GIILIGEIGG+AEEDAA I+ + T KP+V+FI
Sbjct: 213 GDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFI 272
Query: 271 AGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAML 330
AG TAP GRRMGHAG AIV+GGKGTA K + L AGV + SPA +G+ ++
Sbjct: 273 AGATAPKGRRMGHAG---------AIVAGGKGTAAAKFEALEAAGVRISRSPATLGSLIV 323
Query: 331 E 331
E
Sbjct: 324 E 324
>sp|O67547|SUCD_AQUAE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus
(strain VF5) GN=sucD PE=3 SV=1
Length = 305
Score = 317 bits (812), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 173/300 (57%), Positives = 215/300 (71%), Gaps = 11/300 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFNTV EA
Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVK-AALNNQSKTRL 154
ET AN S I+VP PFAA AI+EA++A ++LVVCITEGIP DM+ VK L N +L
Sbjct: 62 KETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKL 121
Query: 155 VGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIG 214
VGPNCPGVI PGE K+GIMPG+I K G+IGIVSRSGTLTYEA +Q T GLGQST VGIG
Sbjct: 122 VGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIG 181
Query: 215 GDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274
GDP +G D + F DP+TE IL+ G EE+ AA E +KP+ A+IAG+T
Sbjct: 182 GDPVHGLTHRDVIEMFNKDPETEA-ILMIGEIGGTEEEEAAEYIEKEVDKPVFAYIAGIT 240
Query: 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
APPG+RMGHAG AI+ GGKGTA+ K++ L +AG V+E+PAKIG + ++ K
Sbjct: 241 APPGKRMGHAG---------AIIMGGKGTAKAKMEALEKAGAYVIENPAKIGETVAKILK 291
>sp|O28098|SUCD2_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD2 PE=3 SV=1
Length = 287
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 208/298 (69%), Gaps = 12/298 (4%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV+++V EA
Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
E ANAS I+VP PFAA A++EA +A + ++VCITEGIP HD +++ + T L+
Sbjct: 62 READANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPG+I PG+ +GIMP I KPG +GIVSRSGTLTY+ + T +GLGQST VGIGG
Sbjct: 121 GPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
D GT+FV+ + F D +T+ ++L+GEIGG EE AA I+E KP+V ++AGLTA
Sbjct: 181 DRIIGTDFVEVLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIRE--MSKPVVGYVAGLTA 238
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
PPG+RMGHAG AI+ GG GTA+ KIK L AG V ++P ++ + E+
Sbjct: 239 PPGKRMGHAG---------AIIEGGVGTAESKIKALEAAGARVGKTPMEVAELVAEIL 287
>sp|P53598|SUCA_YEAST Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=LSC1 PE=1 SV=1
Length = 329
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/304 (54%), Positives = 205/304 (67%), Gaps = 16/304 (5%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF +V +A
Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIK 90
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
ET A ASAI+VPPP AAAAI E++EAE+ L VCITEGIPQHDM+ + L Q KTRLVG
Sbjct: 91 ETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVG 150
Query: 157 PNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
PNCPG+I P + +IGI P I + G+IGI+SRSGTLTYEAV QTT LGQS +G+GG
Sbjct: 151 PNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLVIGMGG 210
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEK----PIVAFIA 271
D F GT+F+D + F+ D TEGII++GEIGG AE +AA +KE + P+ +FIA
Sbjct: 211 DAFPGTDFIDALKLFLEDETTEGIIMLGEIGGKAEIEAAQFLKEYNFSRSKPMPVASFIA 270
Query: 272 GLTA--PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAM 329
G A G RMGH+G AIV G A+ K + LR+ GV VVESP +G A+
Sbjct: 271 GTVAGQMKGVRMGHSG---------AIVEGSGTDAESKKQALRDVGVAVVESPGYLGQAL 321
Query: 330 LEVF 333
L+ F
Sbjct: 322 LDQF 325
>sp|O28733|SUCD1_ARCFU Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=sucD1 PE=3 SV=1
Length = 291
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/300 (53%), Positives = 204/300 (68%), Gaps = 19/300 (6%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
A+ VD+NTRVI QGITG G+F ++ ++YGTK+VGGVTP KGG+E G+PV+NTV EA
Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAV 64
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
AET A+ S IYVP FA AI EA +A L LVVC+TEGIP +D + + L + K+ L+
Sbjct: 65 AETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLL 123
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPGVI PG K+G++P G +G+VSRSGTLTY+ T G+GQST VGIGG
Sbjct: 124 GPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGG 183
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP G FVD + F D +T+ ++L+GEIGGTAEE AA IK+ KP+VAFIAG TA
Sbjct: 184 DPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQ--MSKPVVAFIAGRTA 241
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+ G GTA+ K+ LR+AG V E+ +L+V K+
Sbjct: 242 PPGKRMGHAG---------AIIEGSTGTAEAKMAALRDAGARVAET-------LLDVVKE 285
>sp|P53595|MTKB_METEA Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2
Length = 296
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 205/303 (67%), Gaps = 13/303 (4%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFNTV EA
Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALN---NQSKT 152
T A S +V PPFAA AI+EA +A L LV IT+GIP DM+RVK L + +T
Sbjct: 62 EATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRT 121
Query: 153 RLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVG 212
+VGPNC G+I PG+ +GIMPG+I+ PG++G++SRSGTL YEA Q +G+G ST VG
Sbjct: 122 MVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVG 181
Query: 213 IGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAG 272
IGGDP NG++F+D + F DP+TE +++IGEIGG E +A+A IKE+ KP++ F+AG
Sbjct: 182 IGGDPINGSSFLDHLALFEQDPETEAVLMIGEIGGPQEAEASAWIKEN-FSKPVIGFVAG 240
Query: 273 LTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
LTAP GRRMGHAG AI+S +A +K + +R G+TV P G+ + +V
Sbjct: 241 LTAPKGRRMGHAG---------AIISATGDSAAEKAEIMRSYGLTVAPDPGSFGSTVADV 291
Query: 333 FKQ 335
+
Sbjct: 292 LAR 294
>sp|O26663|SUCD_METTH Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=sucD PE=3 SV=1
Length = 293
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 195/289 (67%), Gaps = 13/289 (4%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+N+V E
Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTE 66
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
E NAS I+VP PFA A E+++ LDLVV ITE IP HD +++ + KT ++G
Sbjct: 67 EMDVNASIIFVPAPFAKDAAFESIK-HLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIG 124
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PG+I PG K+GIMP +I G IGIVSRSGTLTYE Q T G GQSTCVGIGGD
Sbjct: 125 PNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGD 184
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
P G FVD + +F DP T+ ++LIGEIGG AEE AA+ I++ KP+ AFI+G TAP
Sbjct: 185 PVTGLGFVDVLERFEDDPGTDAVVLIGEIGGDAEERAASYIEQ--MSKPVFAFISGATAP 242
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
PG+RMGHAG AI+ GG GTA K + L AG VV+ P+ I
Sbjct: 243 PGKRMGHAG---------AIIEGGTGTASSKREALEAAGAVVVDRPSAI 282
>sp|P53400|SUCA2_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1
Length = 309
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 175/306 (57%), Positives = 213/306 (69%), Gaps = 14/306 (4%)
Query: 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
P +F+DK+TRV+ QGI G G +H+ EYGTK+VG V PKK G GLP+F + E
Sbjct: 13 PLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEV 71
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
T ANAS I+VP P AAAA +EA EA + LVVCITE IPQHDM++VK + ++ +L
Sbjct: 72 VKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVMK-ETGCQL 130
Query: 155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGI 213
+GPNCPG+I+PG K+GI+P I + G+IGIVSRSGTLTYEA + TT GLGQST VGI
Sbjct: 131 IGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVGI 190
Query: 214 GGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG--TEKPIVAFIA 271
GGDPF G D + +F ADPQTEGIILIGEIGGT+EEDAA I ++ EKP+VAFIA
Sbjct: 191 GGDPFAGQLHTDVIKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIA 250
Query: 272 GLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 331
G TAPPG+RMGHAG AIVSGGKGTA+ K K L AGV + P +G + E
Sbjct: 251 GATAPPGKRMGHAG---------AIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFE 301
Query: 332 VFKQRG 337
K+ G
Sbjct: 302 EMKRLG 307
>sp|P53401|SUCA3_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1
Length = 309
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/306 (56%), Positives = 213/306 (69%), Gaps = 14/306 (4%)
Query: 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
P +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK G+ GLP+F + E
Sbjct: 13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEV 71
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
T ANAS I+VP P AAAA +EA +A + LVVCITE IPQHDM++VK + ++ +L
Sbjct: 72 VKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVMK-ETGCQL 130
Query: 155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGI 213
+GPNCPG+I+PG K+GI+P I G+IGIVSRSGTLTYEA + TT GLGQST VGI
Sbjct: 131 IGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGI 190
Query: 214 GGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG--TEKPIVAFIA 271
GGDPF G D V +F ADPQTEGIILIGEIGGT+EEDAA I ++ EKP+VAFIA
Sbjct: 191 GGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIA 250
Query: 272 GLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 331
G TAPPG+RMGHAG AIVSGGKGTA+ K K L AGV + P +G + E
Sbjct: 251 GATAPPGKRMGHAG---------AIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFE 301
Query: 332 VFKQRG 337
K+ G
Sbjct: 302 EMKRMG 307
>sp|P53399|SUCA1_TRIVA Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial
OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1
Length = 309
Score = 281 bits (718), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 175/306 (57%), Positives = 212/306 (69%), Gaps = 14/306 (4%)
Query: 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
P +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK GT GLP+F + E
Sbjct: 13 PLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGTIIAGLPIFKNMKEV 71
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
T ANAS I+VP P AAAA +EA EA + LVVCITE IPQHDM++VK + ++ +L
Sbjct: 72 VKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVMK-ETGCQL 130
Query: 155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGI 213
+GPNCPG+I+PG K+GI+P I G+IGIVSRSGTLTYEA + TT GLGQST VGI
Sbjct: 131 IGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGI 190
Query: 214 GGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG--TEKPIVAFIA 271
GGDPF G D V +F ADPQTEGIILIGEIGGT+EEDAA I ++ EKP+VA IA
Sbjct: 191 GGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVASIA 250
Query: 272 GLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 331
G TAPPG+RMGHAG AIVSGGKGTA+ K K L AGV + P +G + E
Sbjct: 251 GATAPPGKRMGHAG---------AIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFE 301
Query: 332 VFKQRG 337
K+ G
Sbjct: 302 EMKRMG 307
>sp|Q7U0Z0|SUCD_MYCBO Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=sucD PE=3
SV=1
Length = 303
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 191/308 (62%), Gaps = 22/308 (7%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLP 86
++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT + LP
Sbjct: 5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLP 64
Query: 87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKA-A 145
VF +VAEA +T A+ S I+VPP FA AI+EA++AE+ L+V ITEGIP D A
Sbjct: 65 VFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYN 124
Query: 146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
L KTR++GPNCPG+I PG+ GI P I PG IG+VS+SGTLTY+ +F+ L
Sbjct: 125 LEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFELR--DL 182
Query: 206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKP 265
G ST +GIGGDP GT +D + F DP T+ I++IGEIGG AEE AA IK + KP
Sbjct: 183 GFSTAIGIGGDPVIGTTHIDAIEAFEKDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKP 241
Query: 266 IVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
+V ++AG TAP G+ MGHAG AIVSG GTA K + L AGV V ++P+
Sbjct: 242 VVGYVAGFTAPEGKTMGHAG---------AIVSGSSGTAAAKQEALEAAGVKVGKTPSAT 292
Query: 326 GAAMLEVF 333
A E+
Sbjct: 293 AALAREIL 300
>sp|P71558|SUCD_MYCTU Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium
tuberculosis GN=sucD PE=3 SV=1
Length = 303
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 191/308 (62%), Gaps = 22/308 (7%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---------EHLGLP 86
++F+ ++ +VI QGITG T HT + + GT++VGGV +K GT + LP
Sbjct: 5 SIFLSRDNKVIVQGITGSEATVHTARMLRAGTQIVGGVNARKAGTTVTHEDKGGRLIKLP 64
Query: 87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKA-A 145
VF +VAEA +T A+ S I+VPP FA AI+EA++AE+ L+V ITEGIP D A
Sbjct: 65 VFGSVAEAMEKTGADVSIIFVPPTFAKDAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYN 124
Query: 146 LNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 205
L KTR++GPNCPG+I PG+ GI P I PG IG+VS+SGTLTY+ +F+ L
Sbjct: 125 LEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFELR--DL 182
Query: 206 GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKP 265
G ST +GIGGDP GT +D + F DP T+ I++IGEIGG AEE AA IK + KP
Sbjct: 183 GFSTAIGIGGDPVIGTTHIDAIEAFERDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKP 241
Query: 266 IVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
+V ++AG TAP G+ MGHAG AIVSG GTA K + L AGV V ++P+
Sbjct: 242 VVGYVAGFTAPEGKTMGHAG---------AIVSGSSGTAAAKQEALEAAGVKVGKTPSAT 292
Query: 326 GAAMLEVF 333
A E+
Sbjct: 293 AALAREIL 300
>sp|P09143|SUCD_THETH Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus
thermophilus GN=sucD PE=1 SV=1
Length = 288
Score = 251 bits (640), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 152/289 (52%), Positives = 199/289 (68%), Gaps = 11/289 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV++TV EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVA 61
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+ +AS I+VP P AA A LEA A + L+V ITEGIP DMVR + +RL+G
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIG 120
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
NCPG+I E KIGIMPG++ K GR+GI+SRSGTLTYEA + GLG +T VGIGGD
Sbjct: 121 GNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGD 180
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
P GT F D + F DP+TE ++LIGEIGG+ EE+AAA +K+ +KP+V FI G +AP
Sbjct: 181 PVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAP 239
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
G+RMGHAG AI+ G GT + K++ EAG+ V ++ +I
Sbjct: 240 KGKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEI 279
>sp|Q58643|SUCD_METJA Succinyl-CoA ligase [ADP-forming] subunit alpha
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=sucD PE=1
SV=1
Length = 294
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 192/289 (66%), Gaps = 12/289 (4%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +D+NT+ I QGITG+ G+FHT++ +E GTK+VGGVTP KGG G+PVF+TV EA
Sbjct: 8 ILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVK 67
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
ET ANAS I+VP PFA A+ EA++A ++L+V ITE IP HD + +++G
Sbjct: 68 ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIG 126
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PN PG+ P K+GI+P + K G +G+VSRSGTLTYE Q G G STCVGIGGD
Sbjct: 127 PNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGD 186
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
P G + + + F D +TE I++IGEIGG AEE+AA I++ +KP++ +IAG +AP
Sbjct: 187 PIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAP 244
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
G+RMGHAG AIV GKGTA+ K+K L EAG V ++ + I
Sbjct: 245 EGKRMGHAG---------AIVEKGKGTAESKMKALEEAGAYVAKNISDI 284
>sp|Q9P7W3|ACL1_SCHPO Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1703.07 PE=1 SV=1
Length = 615
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 137/277 (49%), Gaps = 29/277 (10%)
Query: 79 GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEGIPQ 136
GT+ + LPV+ T+ EA + + + A A+ +E ME ++ + I EG+P+
Sbjct: 64 GTKEILLPVYRTIEEACTKHPEVDVVVNFASSRSAYASTMELMEFPQIRCIAIIAEGVPE 123
Query: 137 HDMVRVKAAL--NNQSKTRLVGPNCPGVIKPGECKIG--------IMPGYIHKPGRIGIV 186
R + L + + ++GP G IKPG KIG I+ +++PG + V
Sbjct: 124 R---RAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAYV 180
Query: 187 SRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG 246
S+SG ++ E + G + IGGD + GT F+D + +F ADP + ++L+GE+G
Sbjct: 181 SKSGGMSNELNNIISHTTDGVYEGIAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEVG 240
Query: 247 GTAEEDAAALIKESGTEKPIVAFIAGLTAPPGR---RMGHAGVDVYTIFGSAIVSGGKGT 303
G E +K +KPIVA+ G + + + GHAG + + T
Sbjct: 241 GVEEYRVIEAVKNGTIKKPIVAWAIGTCSSMFKTEVQFGHAG---------SFANSELET 291
Query: 304 AQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGLTK 340
A K + +REAG+ V E+ K+ A + EV++ GL K
Sbjct: 292 AVAKNQAMREAGIYVPETFEKLPALLQEVYE--GLVK 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,903,182
Number of Sequences: 539616
Number of extensions: 5674796
Number of successful extensions: 15886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 15647
Number of HSP's gapped (non-prelim): 95
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)