Query 019500
Match_columns 340
No_of_seqs 274 out of 2068
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00187 succinyl-CoA syntheta 100.0 1.8E-72 3.9E-77 538.9 34.7 300 25-336 15-316 (317)
2 PLN00125 Succinyl-CoA ligase [ 100.0 7.4E-72 1.6E-76 532.7 34.0 293 36-338 6-299 (300)
3 PRK05678 succinyl-CoA syntheta 100.0 1.3E-71 2.7E-76 530.1 33.8 289 36-336 2-291 (291)
4 TIGR01019 sucCoAalpha succinyl 100.0 4.4E-71 9.5E-76 525.2 32.7 282 39-332 3-285 (286)
5 TIGR02717 AcCoA-syn-alpha acet 100.0 1.2E-66 2.6E-71 523.9 27.6 272 34-333 1-288 (447)
6 COG0074 SucD Succinyl-CoA synt 100.0 2E-55 4.3E-60 408.7 30.6 290 36-336 2-292 (293)
7 KOG1255 Succinyl-CoA synthetas 100.0 7.4E-54 1.6E-58 388.2 27.4 311 16-338 15-328 (329)
8 PLN02522 ATP citrate (pro-S)-l 100.0 1.1E-53 2.3E-58 438.2 31.8 283 36-336 5-317 (608)
9 COG1042 Acyl-CoA synthetase (N 100.0 1.5E-53 3.3E-58 438.3 22.1 274 32-333 2-292 (598)
10 PRK06091 membrane protein FdrA 100.0 5E-40 1.1E-44 332.0 24.4 204 83-333 103-316 (555)
11 PF13607 Succ_CoA_lig: Succiny 100.0 5.6E-41 1.2E-45 287.6 10.8 132 180-331 1-137 (138)
12 PF13380 CoA_binding_2: CoA bi 99.9 8.7E-24 1.9E-28 176.2 9.9 111 45-165 3-116 (116)
13 COG1832 Predicted CoA-binding 99.8 2.7E-19 5.9E-24 151.1 6.5 122 34-165 9-134 (140)
14 PF02629 CoA_binding: CoA bind 99.5 1E-13 2.2E-18 111.6 11.2 93 40-133 1-96 (96)
15 KOG1254 ATP-citrate lyase [Ene 99.5 4.1E-13 8.9E-18 133.0 13.1 237 85-334 55-307 (600)
16 PF01113 DapB_N: Dihydrodipico 99.4 1.2E-12 2.6E-17 110.2 10.6 110 43-158 1-123 (124)
17 TIGR00036 dapB dihydrodipicoli 99.3 3.8E-11 8.2E-16 113.7 13.0 118 43-164 2-133 (266)
18 PLN02775 Probable dihydrodipic 99.2 1.1E-10 2.3E-15 111.2 12.0 118 42-164 11-142 (286)
19 COG0289 DapB Dihydrodipicolina 99.2 1.1E-10 2.3E-15 109.3 11.7 117 42-163 2-131 (266)
20 COG2344 AT-rich DNA-binding pr 99.2 2.2E-11 4.8E-16 108.4 6.4 105 26-133 65-180 (211)
21 PRK00048 dihydrodipicolinate r 99.1 1.2E-09 2.5E-14 103.1 12.4 116 43-163 2-122 (257)
22 TIGR02130 dapB_plant dihydrodi 99.0 1.3E-09 2.8E-14 103.4 11.2 116 43-164 1-131 (275)
23 PF01408 GFO_IDH_MocA: Oxidore 99.0 3.8E-09 8.3E-14 86.9 9.2 109 43-153 1-115 (120)
24 PF00549 Ligase_CoA: CoA-ligas 98.9 7.3E-09 1.6E-13 90.4 10.4 121 186-330 1-151 (153)
25 PRK11579 putative oxidoreducta 98.6 4.7E-07 1E-11 88.5 12.0 111 42-154 4-118 (346)
26 PRK13303 L-aspartate dehydroge 98.5 6.5E-07 1.4E-11 84.8 10.2 116 43-163 2-126 (265)
27 PRK13304 L-aspartate dehydroge 98.5 8.5E-07 1.8E-11 84.0 10.2 108 43-155 2-117 (265)
28 COG0673 MviM Predicted dehydro 98.5 9E-07 2E-11 85.3 10.4 117 41-158 2-126 (342)
29 PRK05472 redox-sensing transcr 98.4 1.2E-06 2.6E-11 80.2 8.3 114 18-132 57-179 (213)
30 PRK13302 putative L-aspartate 98.3 2.9E-06 6.3E-11 80.7 10.3 112 42-159 6-125 (271)
31 PRK10206 putative oxidoreducta 98.3 3.1E-06 6.6E-11 83.0 10.5 111 42-154 1-118 (344)
32 TIGR01761 thiaz-red thiazoliny 98.2 6.3E-06 1.4E-10 81.0 9.8 108 41-155 2-119 (343)
33 TIGR02717 AcCoA-syn-alpha acet 98.1 0.00027 5.9E-09 71.9 19.7 251 45-333 153-444 (447)
34 TIGR01921 DAP-DH diaminopimela 98.1 1.5E-05 3.2E-10 77.7 9.3 118 42-163 3-126 (324)
35 PLN02819 lysine-ketoglutarate 97.9 6.2E-05 1.3E-09 83.2 10.2 118 41-166 568-708 (1042)
36 PF03446 NAD_binding_2: NAD bi 97.8 4.3E-05 9.4E-10 66.9 7.0 108 43-155 2-116 (163)
37 PRK05479 ketol-acid reductoiso 97.7 0.00023 5E-09 69.6 10.1 119 37-164 14-137 (330)
38 PRK00436 argC N-acetyl-gamma-g 97.7 0.00022 4.7E-09 70.1 9.7 93 42-136 2-104 (343)
39 PRK07634 pyrroline-5-carboxyla 97.7 0.00047 1E-08 63.7 11.0 111 42-158 4-123 (245)
40 TIGR03855 NAD_NadX aspartate d 97.6 0.00022 4.8E-09 66.3 8.8 95 66-163 1-102 (229)
41 TIGR00465 ilvC ketol-acid redu 97.6 0.00032 7E-09 68.2 9.5 112 44-162 5-121 (314)
42 COG0059 IlvC Ketol-acid reduct 97.6 0.00025 5.3E-09 68.1 8.2 128 27-164 6-138 (338)
43 PRK06270 homoserine dehydrogen 97.6 0.00035 7.6E-09 68.6 9.6 175 42-226 2-223 (341)
44 PRK04207 glyceraldehyde-3-phos 97.6 0.00022 4.8E-09 70.0 8.0 87 42-133 1-110 (341)
45 PF07991 IlvN: Acetohydroxy ac 97.6 0.00015 3.3E-09 63.8 6.0 118 38-164 2-124 (165)
46 PF10727 Rossmann-like: Rossma 97.5 0.00029 6.3E-09 59.8 6.9 95 39-137 7-109 (127)
47 PRK09599 6-phosphogluconate de 97.5 0.00068 1.5E-08 65.1 10.1 114 44-161 2-123 (301)
48 PRK12490 6-phosphogluconate de 97.5 0.0006 1.3E-08 65.5 9.7 110 44-156 2-117 (299)
49 PRK06349 homoserine dehydrogen 97.5 0.00053 1.2E-08 69.3 9.6 111 42-155 3-127 (426)
50 PRK08300 acetaldehyde dehydrog 97.5 0.00099 2.1E-08 64.4 10.8 92 41-134 3-104 (302)
51 COG1712 Predicted dinucleotide 97.5 0.0012 2.5E-08 61.2 10.5 108 44-155 2-116 (255)
52 TIGR00872 gnd_rel 6-phosphoglu 97.5 0.001 2.2E-08 63.9 10.8 113 44-160 2-120 (298)
53 PRK13301 putative L-aspartate 97.4 0.0014 3.1E-08 62.2 10.9 109 43-155 3-118 (267)
54 TIGR03215 ac_ald_DH_ac acetald 97.4 0.00065 1.4E-08 65.2 8.7 89 43-133 2-97 (285)
55 PF01118 Semialdhyde_dh: Semia 97.4 0.0012 2.5E-08 55.0 8.7 88 44-135 1-101 (121)
56 PRK07680 late competence prote 97.4 0.0012 2.5E-08 62.6 9.7 107 44-158 2-118 (273)
57 PF01210 NAD_Gly3P_dh_N: NAD-d 97.3 0.0016 3.4E-08 56.7 9.7 112 44-159 1-135 (157)
58 PRK00094 gpsA NAD(P)H-dependen 97.3 0.00085 1.9E-08 64.4 8.8 92 44-139 3-113 (325)
59 KOG2741 Dimeric dihydrodiol de 97.3 0.0018 3.9E-08 63.3 10.4 122 41-165 5-136 (351)
60 PLN02256 arogenate dehydrogena 97.3 0.0018 3.9E-08 62.7 10.5 103 10-119 7-112 (304)
61 PF03807 F420_oxidored: NADP o 97.3 0.00098 2.1E-08 52.6 7.2 73 44-119 1-81 (96)
62 PRK11559 garR tartronate semia 97.3 0.002 4.4E-08 61.4 10.6 108 44-156 4-119 (296)
63 PRK14618 NAD(P)H-dependent gly 97.3 0.0011 2.4E-08 64.2 8.8 111 42-158 4-136 (328)
64 COG0240 GpsA Glycerol-3-phosph 97.3 0.0021 4.5E-08 62.8 10.3 112 44-159 3-137 (329)
65 COG1086 Predicted nucleoside-d 97.3 0.014 3.1E-07 60.5 16.8 210 40-272 114-333 (588)
66 PRK11880 pyrroline-5-carboxyla 97.2 0.0017 3.6E-08 61.0 9.4 93 43-139 3-102 (267)
67 PRK07679 pyrroline-5-carboxyla 97.2 0.0031 6.8E-08 59.9 11.3 95 43-141 4-109 (279)
68 TIGR01692 HIBADH 3-hydroxyisob 97.2 0.0018 3.8E-08 61.9 9.2 104 48-156 2-113 (288)
69 PTZ00431 pyrroline carboxylate 97.2 0.0037 7.9E-08 58.9 11.1 93 43-141 4-100 (260)
70 TIGR01505 tartro_sem_red 2-hyd 97.2 0.0025 5.5E-08 60.7 9.9 108 45-157 2-117 (291)
71 PRK00696 sucC succinyl-CoA syn 97.2 0.0084 1.8E-07 59.8 13.9 123 180-332 256-384 (388)
72 TIGR01016 sucCoAbeta succinyl- 97.1 0.0066 1.4E-07 60.5 13.0 123 179-331 255-383 (386)
73 PF03447 NAD_binding_3: Homose 97.1 0.00039 8.5E-09 57.3 3.2 104 49-155 1-115 (117)
74 PRK15059 tartronate semialdehy 97.1 0.0024 5.3E-08 61.3 8.8 107 44-156 2-116 (292)
75 PRK13403 ketol-acid reductoiso 97.1 0.0023 5E-08 62.5 8.5 119 36-163 12-134 (335)
76 PRK06928 pyrroline-5-carboxyla 97.1 0.0058 1.3E-07 58.2 11.1 94 44-141 3-108 (277)
77 PRK08374 homoserine dehydrogen 97.0 0.0044 9.5E-08 60.8 10.4 121 42-165 2-155 (336)
78 PRK06091 membrane protein FdrA 97.0 0.3 6.4E-06 51.0 24.0 253 38-334 191-494 (555)
79 PLN02688 pyrroline-5-carboxyla 97.0 0.0042 9.2E-08 58.2 9.6 93 44-140 2-104 (266)
80 PRK11199 tyrA bifunctional cho 97.0 0.0062 1.3E-07 60.6 10.9 76 40-128 96-171 (374)
81 PTZ00345 glycerol-3-phosphate 97.0 0.0042 9E-08 61.7 9.6 96 39-137 8-135 (365)
82 PRK12491 pyrroline-5-carboxyla 97.0 0.0071 1.5E-07 57.6 10.7 95 44-141 4-107 (272)
83 PLN02712 arogenate dehydrogena 96.9 0.0072 1.6E-07 64.6 11.7 95 22-121 351-447 (667)
84 PRK15461 NADH-dependent gamma- 96.9 0.0062 1.3E-07 58.5 10.0 110 44-158 3-121 (296)
85 COG1748 LYS9 Saccharopine dehy 96.9 0.0057 1.2E-07 61.1 9.7 105 43-155 2-120 (389)
86 TIGR01850 argC N-acetyl-gamma- 96.9 0.0043 9.4E-08 61.1 8.8 91 43-136 1-104 (346)
87 TIGR03376 glycerol3P_DH glycer 96.8 0.008 1.7E-07 59.2 10.0 90 45-137 2-122 (342)
88 PRK08655 prephenate dehydrogen 96.8 0.011 2.4E-07 60.1 11.2 110 44-158 2-116 (437)
89 PRK14619 NAD(P)H-dependent gly 96.8 0.01 2.2E-07 57.2 10.5 82 43-138 5-89 (308)
90 PF13460 NAD_binding_10: NADH( 96.8 0.0042 9.1E-08 54.2 7.0 86 45-132 1-98 (183)
91 TIGR03649 ergot_EASG ergot alk 96.8 0.21 4.5E-06 46.8 19.1 88 45-132 2-105 (285)
92 PRK06476 pyrroline-5-carboxyla 96.8 0.0091 2E-07 55.9 9.7 95 44-141 2-103 (258)
93 PRK12439 NAD(P)H-dependent gly 96.7 0.013 2.8E-07 57.5 10.9 93 42-137 7-117 (341)
94 PLN02712 arogenate dehydrogena 96.7 0.017 3.6E-07 61.8 12.2 76 42-120 52-129 (667)
95 PRK07502 cyclohexadienyl dehyd 96.7 0.013 2.8E-07 56.4 10.2 112 43-159 7-125 (307)
96 PLN02350 phosphogluconate dehy 96.6 0.012 2.5E-07 60.8 10.2 115 44-161 8-135 (493)
97 COG2084 MmsB 3-hydroxyisobutyr 96.6 0.012 2.6E-07 56.6 9.6 118 44-165 2-128 (286)
98 TIGR00873 gnd 6-phosphoglucona 96.6 0.013 2.9E-07 60.0 10.2 113 45-161 2-126 (467)
99 PRK14620 NAD(P)H-dependent gly 96.6 0.017 3.6E-07 56.0 10.2 90 44-136 2-111 (326)
100 PRK06545 prephenate dehydrogen 96.5 0.018 3.8E-07 56.9 10.4 107 45-158 3-119 (359)
101 PRK06728 aspartate-semialdehyd 96.5 0.023 4.9E-07 56.2 11.0 113 40-161 3-134 (347)
102 COG0136 Asd Aspartate-semialde 96.5 0.026 5.6E-07 55.3 10.8 116 43-161 2-135 (334)
103 PLN02968 Probable N-acetyl-gam 96.5 0.019 4.1E-07 57.4 10.2 93 40-135 36-138 (381)
104 PRK08507 prephenate dehydrogen 96.4 0.017 3.7E-07 54.7 9.2 87 44-135 2-93 (275)
105 PLN02383 aspartate semialdehyd 96.4 0.026 5.6E-07 55.7 10.5 120 39-162 4-142 (344)
106 PRK05671 aspartate-semialdehyd 96.4 0.012 2.6E-07 57.8 8.2 92 40-135 2-101 (336)
107 TIGR03570 NeuD_NnaD sugar O-ac 96.4 0.027 5.9E-07 49.6 9.6 82 45-127 2-87 (201)
108 COG0002 ArgC Acetylglutamate s 96.3 0.02 4.3E-07 56.2 9.1 90 42-135 2-105 (349)
109 PRK06598 aspartate-semialdehyd 96.3 0.025 5.5E-07 56.3 10.0 114 43-162 2-138 (369)
110 PRK14046 malate--CoA ligase su 96.3 0.086 1.9E-06 52.9 13.7 123 179-331 255-383 (392)
111 PRK07417 arogenate dehydrogena 96.3 0.019 4E-07 54.6 8.4 89 44-137 2-96 (279)
112 PTZ00142 6-phosphogluconate de 96.2 0.031 6.6E-07 57.4 10.4 114 44-161 3-129 (470)
113 PF03435 Saccharop_dh: Sacchar 96.2 0.0077 1.7E-07 59.7 5.7 104 45-155 1-119 (386)
114 PF05368 NmrA: NmrA-like famil 96.2 0.019 4.2E-07 52.3 7.9 87 45-132 1-102 (233)
115 TIGR01915 npdG NADPH-dependent 96.2 0.022 4.7E-07 52.2 8.2 90 44-136 2-106 (219)
116 PRK06444 prephenate dehydrogen 96.1 0.013 2.8E-07 53.4 6.3 51 44-120 2-52 (197)
117 PRK08664 aspartate-semialdehyd 96.1 0.028 6E-07 55.4 9.1 90 42-135 3-111 (349)
118 PRK14874 aspartate-semialdehyd 96.1 0.03 6.5E-07 54.8 9.1 91 43-135 2-98 (334)
119 PRK11863 N-acetyl-gamma-glutam 96.1 0.035 7.7E-07 54.1 9.4 83 42-135 2-85 (313)
120 smart00846 Gp_dh_N Glyceraldeh 96.0 0.043 9.3E-07 47.7 8.5 86 43-129 1-117 (149)
121 PRK14806 bifunctional cyclohex 96.0 0.056 1.2E-06 58.2 11.2 108 44-155 5-119 (735)
122 PLN02545 3-hydroxybutyryl-CoA 95.9 0.022 4.7E-07 54.5 7.2 91 44-139 6-127 (295)
123 TIGR03026 NDP-sugDHase nucleot 95.9 0.043 9.3E-07 55.1 9.5 96 44-143 2-131 (411)
124 PRK08818 prephenate dehydrogen 95.9 0.11 2.3E-06 51.9 11.9 69 43-122 5-74 (370)
125 PRK06392 homoserine dehydrogen 95.8 0.055 1.2E-06 53.0 9.6 106 44-155 2-139 (326)
126 PRK08040 putative semialdehyde 95.8 0.038 8.3E-07 54.3 8.5 93 40-135 2-101 (336)
127 TIGR01546 GAPDH-II_archae glyc 95.8 0.03 6.5E-07 55.0 7.6 81 46-129 2-105 (333)
128 TIGR00978 asd_EA aspartate-sem 95.8 0.033 7.2E-07 54.7 7.8 91 43-135 1-108 (341)
129 COG0287 TyrA Prephenate dehydr 95.7 0.083 1.8E-06 50.7 10.2 84 42-128 3-94 (279)
130 COG0345 ProC Pyrroline-5-carbo 95.7 0.087 1.9E-06 50.2 10.0 113 44-164 3-124 (266)
131 TIGR01745 asd_gamma aspartate- 95.7 0.052 1.1E-06 54.0 8.8 117 44-162 2-137 (366)
132 PRK05808 3-hydroxybutyryl-CoA 95.6 0.044 9.6E-07 52.0 7.9 88 44-138 5-125 (282)
133 TIGR02853 spore_dpaA dipicolin 95.6 0.055 1.2E-06 52.0 8.4 113 42-166 151-271 (287)
134 PLN02858 fructose-bisphosphate 95.6 0.063 1.4E-06 61.8 10.2 114 43-161 325-449 (1378)
135 TIGR03025 EPS_sugtrans exopoly 95.5 0.061 1.3E-06 54.4 8.9 85 43-128 126-220 (445)
136 TIGR03023 WcaJ_sugtrans Undeca 95.5 0.067 1.5E-06 54.2 9.2 84 43-128 129-223 (451)
137 PRK15204 undecaprenyl-phosphat 95.5 0.079 1.7E-06 54.4 9.7 86 44-131 148-242 (476)
138 PRK06436 glycerate dehydrogena 95.5 0.16 3.5E-06 49.2 11.3 65 38-111 120-185 (303)
139 PRK06522 2-dehydropantoate 2-r 95.5 0.07 1.5E-06 50.5 8.6 89 44-137 2-106 (304)
140 PRK08605 D-lactate dehydrogena 95.4 0.085 1.8E-06 51.7 9.3 98 43-146 147-250 (332)
141 PRK00257 erythronate-4-phospha 95.4 0.089 1.9E-06 52.6 9.5 62 43-110 117-178 (381)
142 PRK05225 ketol-acid reductoiso 95.4 0.03 6.4E-07 57.1 6.0 156 36-206 32-200 (487)
143 PRK15469 ghrA bifunctional gly 95.3 0.19 4.1E-06 48.9 11.3 68 43-116 137-208 (312)
144 PRK09260 3-hydroxybutyryl-CoA 95.3 0.028 6.1E-07 53.5 5.5 91 44-138 3-124 (288)
145 PRK07574 formate dehydrogenase 95.3 0.16 3.4E-06 51.0 10.9 63 43-109 193-258 (385)
146 TIGR01532 E4PD_g-proteo D-eryt 95.3 0.077 1.7E-06 52.0 8.6 89 44-135 1-124 (325)
147 TIGR01851 argC_other N-acetyl- 95.3 0.1 2.3E-06 50.7 9.2 207 44-271 3-247 (310)
148 TIGR03022 WbaP_sugtrans Undeca 95.2 0.097 2.1E-06 53.1 9.2 83 44-128 127-220 (456)
149 PRK06130 3-hydroxybutyryl-CoA 95.2 0.12 2.5E-06 49.7 9.2 88 44-135 6-119 (311)
150 PLN00124 succinyl-CoA ligase [ 95.2 0.45 9.7E-06 48.3 13.7 121 179-329 290-416 (422)
151 PRK12480 D-lactate dehydrogena 95.1 0.15 3.3E-06 50.0 9.9 63 44-111 148-210 (330)
152 CHL00194 ycf39 Ycf39; Provisio 95.1 0.089 1.9E-06 50.5 8.2 86 44-132 2-110 (317)
153 cd01075 NAD_bind_Leu_Phe_Val_D 95.0 0.13 2.8E-06 46.7 8.6 112 42-164 28-148 (200)
154 cd01065 NAD_bind_Shikimate_DH 95.0 0.042 9E-07 46.8 5.1 107 42-156 19-137 (155)
155 PRK15438 erythronate-4-phospha 95.0 0.15 3.2E-06 51.1 9.5 61 43-109 117-177 (378)
156 COG1023 Gnd Predicted 6-phosph 95.0 0.14 3.1E-06 48.2 8.6 116 45-162 3-123 (300)
157 PRK10124 putative UDP-glucose 94.9 0.12 2.5E-06 53.0 8.9 82 44-128 145-235 (463)
158 PLN02858 fructose-bisphosphate 94.9 0.15 3.3E-06 58.8 10.5 108 43-155 5-122 (1378)
159 PLN03139 formate dehydrogenase 94.9 0.26 5.6E-06 49.4 11.0 104 44-153 201-311 (386)
160 PLN00141 Tic62-NAD(P)-related 94.9 0.27 5.9E-06 45.3 10.5 34 40-73 15-48 (251)
161 PRK11064 wecC UDP-N-acetyl-D-m 94.8 0.2 4.4E-06 50.5 10.3 100 43-144 4-131 (415)
162 PRK13243 glyoxylate reductase; 94.8 0.23 5.1E-06 48.6 10.4 64 42-110 150-215 (333)
163 TIGR01296 asd_B aspartate-semi 94.8 0.067 1.5E-06 52.6 6.5 86 45-134 2-95 (339)
164 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.15 3.3E-06 53.0 8.7 63 44-110 140-204 (525)
165 PLN00016 RNA-binding protein; 94.4 0.26 5.6E-06 48.6 9.8 92 41-132 51-165 (378)
166 PRK12921 2-dehydropantoate 2-r 94.4 0.28 6E-06 46.6 9.6 89 44-136 2-107 (305)
167 PLN02657 3,8-divinyl protochlo 94.3 0.24 5.2E-06 49.4 9.3 93 40-132 58-182 (390)
168 COG0111 SerA Phosphoglycerate 94.3 0.24 5.1E-06 48.6 8.9 69 44-116 144-215 (324)
169 PRK09287 6-phosphogluconate de 94.2 0.32 7E-06 49.9 10.0 106 54-161 1-117 (459)
170 PF13727 CoA_binding_3: CoA-bi 94.2 0.13 2.9E-06 44.0 6.3 81 46-127 81-172 (175)
171 PRK06035 3-hydroxyacyl-CoA deh 94.1 0.19 4.1E-06 47.9 7.9 31 44-76 5-35 (291)
172 COG0057 GapA Glyceraldehyde-3- 94.1 0.23 5.1E-06 48.5 8.3 91 42-133 1-124 (335)
173 cd07018 S49_SppA_67K_type Sign 94.0 0.24 5.2E-06 45.6 8.0 94 222-318 33-133 (222)
174 PRK07530 3-hydroxybutyryl-CoA 94.0 0.13 2.9E-06 49.0 6.5 90 44-137 6-125 (292)
175 KOG0409 Predicted dehydrogenas 94.0 0.47 1E-05 46.0 9.9 194 39-242 32-252 (327)
176 PF00044 Gp_dh_N: Glyceraldehy 93.9 0.11 2.3E-06 45.5 5.2 86 43-129 1-118 (151)
177 PF04321 RmlD_sub_bind: RmlD s 93.9 0.071 1.5E-06 50.8 4.4 83 43-132 1-101 (286)
178 PRK08293 3-hydroxybutyryl-CoA 93.9 0.34 7.5E-06 46.1 9.1 90 44-137 5-126 (287)
179 PRK08410 2-hydroxyacid dehydro 93.9 0.36 7.8E-06 46.9 9.3 62 42-109 145-206 (311)
180 PRK06129 3-hydroxyacyl-CoA deh 93.8 0.24 5.2E-06 47.7 8.0 75 44-122 4-107 (308)
181 PRK06249 2-dehydropantoate 2-r 93.8 0.46 9.9E-06 45.8 9.9 92 42-137 5-112 (313)
182 PRK07531 bifunctional 3-hydrox 93.7 0.26 5.6E-06 50.9 8.4 108 44-159 6-141 (495)
183 PF02826 2-Hacid_dh_C: D-isome 93.7 0.092 2E-06 46.6 4.4 63 42-109 36-101 (178)
184 TIGR03013 EpsB_2 sugar transfe 93.6 0.25 5.4E-06 50.1 8.1 84 44-128 126-218 (442)
185 PRK13535 erythrose 4-phosphate 93.6 0.27 5.8E-06 48.5 7.8 90 43-135 2-126 (336)
186 PRK05865 hypothetical protein; 93.6 1.8 3.9E-05 47.8 14.9 88 44-134 2-105 (854)
187 COG2910 Putative NADH-flavin r 93.5 0.37 8E-06 43.7 8.0 64 44-110 2-73 (211)
188 COG0045 SucC Succinyl-CoA synt 93.5 2.5 5.4E-05 42.2 14.4 124 179-332 254-383 (387)
189 PRK06932 glycerate dehydrogena 93.5 0.46 1E-05 46.2 9.3 61 42-109 147-207 (314)
190 PRK06719 precorrin-2 dehydroge 93.5 0.19 4E-06 44.0 5.9 37 39-77 10-46 (157)
191 PRK11790 D-3-phosphoglycerate 93.4 0.6 1.3E-05 47.1 10.3 68 44-116 153-221 (409)
192 PRK08306 dipicolinate synthase 93.4 0.27 5.8E-06 47.4 7.4 112 42-163 152-269 (296)
193 PRK08229 2-dehydropantoate 2-r 93.4 0.5 1.1E-05 45.8 9.4 89 44-137 4-113 (341)
194 PRK15181 Vi polysaccharide bio 93.3 0.49 1.1E-05 46.0 9.2 38 35-72 8-45 (348)
195 PF02558 ApbA: Ketopantoate re 93.3 0.25 5.4E-06 41.9 6.3 90 45-137 1-107 (151)
196 PRK08955 glyceraldehyde-3-phos 93.2 0.42 9.1E-06 47.0 8.5 87 43-132 3-120 (334)
197 PLN02695 GDP-D-mannose-3',5'-e 93.1 0.65 1.4E-05 45.8 9.9 91 40-132 19-137 (370)
198 KOG2380 Prephenate dehydrogena 92.9 0.6 1.3E-05 46.1 9.0 115 42-158 52-173 (480)
199 PRK15057 UDP-glucose 6-dehydro 92.9 0.59 1.3E-05 46.8 9.2 108 44-158 2-141 (388)
200 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.72 1.6E-05 42.5 9.0 111 40-159 21-150 (217)
201 COG0565 LasT rRNA methylase [T 92.8 1.3 2.7E-05 41.7 10.6 64 41-107 3-80 (242)
202 PF02593 dTMP_synthase: Thymid 92.8 0.73 1.6E-05 42.7 8.9 105 51-161 5-113 (217)
203 COG4693 PchG Oxidoreductase (N 92.5 0.32 7E-06 46.7 6.3 107 39-155 3-120 (361)
204 PRK13581 D-3-phosphoglycerate 92.4 0.56 1.2E-05 48.9 8.7 68 44-116 142-212 (526)
205 TIGR01181 dTDP_gluc_dehyt dTDP 92.4 2.9 6.2E-05 39.1 12.8 30 44-74 1-32 (317)
206 cd00394 Clp_protease_like Case 92.3 0.34 7.3E-06 41.9 5.9 54 223-276 16-70 (161)
207 PRK06718 precorrin-2 dehydroge 92.3 0.54 1.2E-05 42.8 7.5 37 39-77 7-43 (202)
208 COG4569 MhpF Acetaldehyde dehy 92.2 0.56 1.2E-05 43.2 7.3 91 40-132 2-103 (310)
209 PRK10675 UDP-galactose-4-epime 91.9 1.2 2.5E-05 42.7 9.7 29 44-72 2-30 (338)
210 TIGR00715 precor6x_red precorr 91.7 0.71 1.5E-05 43.7 7.8 83 44-127 2-96 (256)
211 cd01483 E1_enzyme_family Super 91.7 0.6 1.3E-05 39.5 6.6 114 44-162 1-125 (143)
212 TIGR01777 yfcH conserved hypot 91.6 0.81 1.8E-05 42.4 8.1 85 45-132 1-111 (292)
213 PLN03209 translocon at the inn 91.6 0.95 2.1E-05 47.7 9.2 86 44-132 82-208 (576)
214 COG2085 Predicted dinucleotide 91.6 1.5 3.2E-05 40.5 9.4 81 44-128 3-90 (211)
215 PLN02928 oxidoreductase family 91.6 1.4 3E-05 43.5 10.0 62 43-109 160-236 (347)
216 smart00859 Semialdhyde_dh Semi 91.6 0.61 1.3E-05 38.3 6.4 73 45-118 2-84 (122)
217 cd05213 NAD_bind_Glutamyl_tRNA 91.6 0.4 8.8E-06 46.4 6.1 79 41-122 177-261 (311)
218 COG0569 TrkA K+ transport syst 91.6 0.64 1.4E-05 43.0 7.2 84 44-130 2-99 (225)
219 PLN02214 cinnamoyl-CoA reducta 91.6 1.5 3.2E-05 42.6 10.1 90 41-132 9-127 (342)
220 COG1810 Uncharacterized protei 91.6 1.7 3.8E-05 40.2 9.8 110 43-160 2-115 (224)
221 PLN02358 glyceraldehyde-3-phos 91.6 0.61 1.3E-05 46.0 7.3 89 41-131 4-126 (338)
222 PRK15182 Vi polysaccharide bio 91.5 1.1 2.4E-05 45.4 9.5 67 38-110 2-87 (425)
223 COG3268 Uncharacterized conser 91.5 0.63 1.4E-05 45.7 7.2 124 39-168 3-141 (382)
224 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.5 0.49 1.1E-05 49.1 6.9 65 44-112 7-97 (503)
225 cd07022 S49_Sppa_36K_type Sign 91.5 0.43 9.3E-06 43.6 5.9 56 221-276 28-86 (214)
226 TIGR01214 rmlD dTDP-4-dehydror 91.3 0.96 2.1E-05 42.1 8.2 82 44-132 1-100 (287)
227 PRK06813 homoserine dehydrogen 91.3 1.3 2.9E-05 43.8 9.4 115 42-161 2-151 (346)
228 PTZ00023 glyceraldehyde-3-phos 91.2 0.92 2E-05 44.7 8.2 88 43-132 3-122 (337)
229 PRK08223 hypothetical protein; 91.1 1.2 2.5E-05 43.1 8.6 117 42-161 27-154 (287)
230 PLN02725 GDP-4-keto-6-deoxyman 91.0 1.3 2.7E-05 41.6 8.7 81 47-132 2-101 (306)
231 KOG2711 Glycerol-3-phosphate d 90.9 0.55 1.2E-05 46.2 6.2 185 42-230 21-262 (372)
232 cd07023 S49_Sppa_N_C Signal pe 90.9 0.69 1.5E-05 42.0 6.6 55 222-276 21-79 (208)
233 PRK05447 1-deoxy-D-xylulose 5- 90.9 1.7 3.6E-05 43.7 9.8 84 44-127 3-119 (385)
234 cd07019 S49_SppA_1 Signal pept 90.9 0.6 1.3E-05 42.6 6.2 54 222-275 25-82 (211)
235 cd01491 Ube1_repeat1 Ubiquitin 90.7 1.2 2.5E-05 43.0 8.2 114 42-164 19-143 (286)
236 PF00899 ThiF: ThiF family; I 90.7 0.95 2.1E-05 38.0 6.9 115 42-161 2-127 (135)
237 cd07014 S49_SppA Signal peptid 90.7 0.67 1.5E-05 40.9 6.2 55 222-276 26-84 (177)
238 PRK08268 3-hydroxy-acyl-CoA de 90.6 0.61 1.3E-05 48.4 6.7 66 44-114 9-101 (507)
239 TIGR01179 galE UDP-glucose-4-e 90.6 1.6 3.5E-05 40.9 9.2 88 44-132 1-121 (328)
240 TIGR00936 ahcY adenosylhomocys 90.6 1.1 2.3E-05 45.4 8.2 99 42-146 195-297 (406)
241 PRK12320 hypothetical protein; 90.6 1.3 2.8E-05 47.8 9.3 86 44-133 2-103 (699)
242 TIGR02356 adenyl_thiF thiazole 90.6 1.2 2.6E-05 40.4 7.9 115 42-161 21-146 (202)
243 TIGR03466 HpnA hopanoid-associ 90.6 1.7 3.8E-05 40.9 9.3 87 44-132 2-113 (328)
244 PRK07403 glyceraldehyde-3-phos 90.6 0.92 2E-05 44.7 7.5 88 42-132 1-122 (337)
245 cd00757 ThiF_MoeB_HesA_family 90.4 1.6 3.5E-05 40.2 8.7 35 42-77 21-55 (228)
246 cd00755 YgdL_like Family of ac 90.3 1.8 3.9E-05 40.3 9.0 35 42-77 11-45 (231)
247 PRK09987 dTDP-4-dehydrorhamnos 90.3 1.1 2.3E-05 42.7 7.6 84 44-132 2-104 (299)
248 PLN02240 UDP-glucose 4-epimera 90.2 2.2 4.7E-05 41.0 9.8 89 44-132 7-132 (352)
249 PRK05562 precorrin-2 dehydroge 89.9 1.2 2.6E-05 41.4 7.3 49 27-77 10-58 (223)
250 PTZ00434 cytosolic glyceraldeh 89.9 1.3 2.9E-05 44.0 7.9 86 43-129 4-134 (361)
251 COG2185 Sbm Methylmalonyl-CoA 89.8 3.5 7.6E-05 35.8 9.6 96 47-158 19-123 (143)
252 PLN03096 glyceraldehyde-3-phos 89.8 1.3 2.9E-05 44.5 8.1 88 42-132 60-182 (395)
253 cd01492 Aos1_SUMO Ubiquitin ac 89.7 2.4 5.3E-05 38.3 9.1 115 43-163 22-147 (197)
254 TIGR01724 hmd_rel H2-forming N 89.7 3.6 7.8E-05 40.5 10.6 83 55-140 32-124 (341)
255 PRK15409 bifunctional glyoxyla 89.6 2.6 5.6E-05 41.2 9.8 62 43-109 146-210 (323)
256 PLN02235 ATP citrate (pro-S)-l 89.4 2.7 5.8E-05 42.7 9.9 97 179-276 268-382 (423)
257 TIGR01470 cysG_Nterm siroheme 89.4 1.3 2.8E-05 40.4 7.1 34 42-77 9-42 (205)
258 PRK07729 glyceraldehyde-3-phos 89.4 2 4.2E-05 42.6 8.7 86 43-131 3-120 (343)
259 PRK08618 ornithine cyclodeamin 89.4 0.64 1.4E-05 45.3 5.4 88 39-131 124-222 (325)
260 PRK09414 glutamate dehydrogena 89.3 2.4 5.2E-05 43.4 9.6 110 40-158 230-366 (445)
261 KOG1502 Flavonol reductase/cin 89.2 2.8 6.1E-05 41.2 9.6 90 41-133 5-129 (327)
262 PLN02896 cinnamyl-alcohol dehy 89.0 2.6 5.7E-05 40.8 9.4 33 40-72 8-40 (353)
263 PRK12475 thiamine/molybdopteri 89.0 1.7 3.8E-05 42.7 8.1 114 43-161 25-151 (338)
264 PF01488 Shikimate_DH: Shikima 88.9 0.42 9.1E-06 40.4 3.3 79 41-123 11-98 (135)
265 TIGR00706 SppA_dom signal pept 88.9 1.2 2.5E-05 40.6 6.4 54 223-276 18-74 (207)
266 PF03721 UDPG_MGDP_dh_N: UDP-g 88.8 1.7 3.6E-05 39.0 7.3 88 43-136 1-124 (185)
267 PRK07819 3-hydroxybutyryl-CoA 88.8 1.2 2.7E-05 42.5 6.8 66 44-113 7-98 (286)
268 PF13241 NAD_binding_7: Putati 88.7 0.67 1.5E-05 37.3 4.2 82 38-126 3-88 (103)
269 PLN02583 cinnamoyl-CoA reducta 88.6 3.9 8.4E-05 38.8 10.0 30 44-73 8-37 (297)
270 KOG1203 Predicted dehydrogenas 88.5 1 2.2E-05 45.5 6.2 44 41-84 78-121 (411)
271 PF02153 PDH: Prephenate dehyd 88.4 1.6 3.5E-05 41.0 7.2 93 59-156 2-101 (258)
272 TIGR02622 CDP_4_6_dhtase CDP-g 88.4 3.5 7.5E-05 39.9 9.8 29 43-71 5-33 (349)
273 PRK07066 3-hydroxybutyryl-CoA 88.4 2.2 4.8E-05 41.7 8.3 65 44-111 9-95 (321)
274 PF02670 DXP_reductoisom: 1-de 88.3 1.7 3.7E-05 37.0 6.6 28 45-72 1-30 (129)
275 PLN02272 glyceraldehyde-3-phos 88.2 1.3 2.9E-05 44.8 6.9 89 43-132 86-207 (421)
276 PRK08328 hypothetical protein; 88.1 3.2 7E-05 38.4 9.0 115 43-162 28-154 (231)
277 cd00401 AdoHcyase S-adenosyl-L 88.1 1.2 2.6E-05 45.1 6.4 78 43-124 203-283 (413)
278 cd05313 NAD_bind_2_Glu_DH NAD( 88.1 2.6 5.6E-05 40.0 8.3 32 41-73 37-68 (254)
279 PF00289 CPSase_L_chain: Carba 88.0 1.5 3.2E-05 36.1 5.9 97 44-158 4-106 (110)
280 KOG2018 Predicted dinucleotide 87.9 2 4.3E-05 42.1 7.4 89 42-134 74-199 (430)
281 PRK06487 glycerate dehydrogena 87.9 1.3 2.9E-05 43.0 6.5 60 42-109 148-207 (317)
282 PRK05476 S-adenosyl-L-homocyst 87.9 1.9 4E-05 43.9 7.7 115 42-165 212-330 (425)
283 COG1893 ApbA Ketopantoate redu 87.8 3.1 6.7E-05 40.4 8.9 92 44-138 2-108 (307)
284 PLN02166 dTDP-glucose 4,6-dehy 87.7 2.2 4.8E-05 43.3 8.2 41 34-74 112-152 (436)
285 PLN02494 adenosylhomocysteinas 87.7 1.3 2.9E-05 45.6 6.5 97 43-145 255-355 (477)
286 PF10087 DUF2325: Uncharacteri 87.6 11 0.00025 29.8 10.7 80 45-135 2-85 (97)
287 COG1052 LdhA Lactate dehydroge 87.5 4.1 8.9E-05 39.9 9.7 65 42-110 146-211 (324)
288 PRK11150 rfaD ADP-L-glycero-D- 87.4 2.1 4.5E-05 40.5 7.4 31 45-75 2-32 (308)
289 PF01370 Epimerase: NAD depend 87.4 2.4 5.1E-05 37.9 7.4 30 45-74 1-30 (236)
290 COG4091 Predicted homoserine d 87.4 9.7 0.00021 38.0 11.9 124 40-166 15-191 (438)
291 PF00208 ELFV_dehydrog: Glutam 87.3 1.2 2.5E-05 42.0 5.5 110 40-158 30-169 (244)
292 PRK06046 alanine dehydrogenase 87.2 0.76 1.7E-05 44.8 4.4 86 39-129 126-222 (326)
293 COG3804 Uncharacterized conser 87.2 4.1 8.9E-05 39.4 9.0 110 42-157 2-130 (350)
294 PRK06901 aspartate-semialdehyd 87.1 2.6 5.7E-05 41.3 7.9 90 42-135 3-99 (322)
295 cd01076 NAD_bind_1_Glu_DH NAD( 87.0 2.4 5.2E-05 39.3 7.4 34 40-74 29-62 (227)
296 PRK14031 glutamate dehydrogena 86.9 5.8 0.00013 40.6 10.6 34 40-75 226-259 (444)
297 PRK09466 metL bifunctional asp 86.9 4.7 0.0001 44.4 10.5 118 39-161 455-604 (810)
298 PRK05708 2-dehydropantoate 2-r 86.7 4.2 9E-05 39.2 9.1 93 42-138 2-111 (305)
299 PF07755 DUF1611: Protein of u 86.7 5.8 0.00013 38.6 9.9 176 83-276 18-229 (301)
300 COG1091 RfbD dTDP-4-dehydrorha 86.7 2.3 5.1E-05 40.9 7.2 81 44-132 2-100 (281)
301 TIGR00705 SppA_67K signal pept 86.6 1.6 3.6E-05 46.1 6.7 52 222-273 80-136 (584)
302 PLN02662 cinnamyl-alcohol dehy 86.6 5.8 0.00013 37.5 10.0 31 43-73 5-35 (322)
303 COG1171 IlvA Threonine dehydra 86.6 36 0.00078 33.8 17.6 210 87-337 60-279 (347)
304 PTZ00117 malate dehydrogenase; 86.5 7.7 0.00017 37.7 10.9 85 42-131 5-121 (319)
305 PRK12557 H(2)-dependent methyl 86.4 4.1 8.9E-05 40.2 9.0 88 55-145 32-130 (342)
306 TIGR00640 acid_CoA_mut_C methy 86.4 4.7 0.0001 34.2 8.3 91 53-159 16-114 (132)
307 KOG4039 Serine/threonine kinas 86.4 4.4 9.4E-05 36.8 8.2 99 33-132 9-131 (238)
308 COG0460 ThrA Homoserine dehydr 86.3 6.2 0.00013 38.9 10.1 109 41-155 2-136 (333)
309 TIGR01501 MthylAspMutase methy 86.2 4.5 9.7E-05 34.7 8.0 95 53-159 15-119 (134)
310 PRK04148 hypothetical protein; 86.1 1.6 3.5E-05 37.4 5.2 83 41-128 16-107 (134)
311 PRK15425 gapA glyceraldehyde-3 86.1 3.5 7.6E-05 40.6 8.2 87 43-132 3-121 (331)
312 PF01073 3Beta_HSD: 3-beta hyd 85.8 3.6 7.8E-05 39.1 8.1 82 47-132 2-115 (280)
313 PRK10949 protease 4; Provision 85.7 3.3 7.1E-05 44.2 8.4 95 222-318 99-200 (618)
314 cd01485 E1-1_like Ubiquitin ac 85.7 2.6 5.6E-05 38.2 6.7 118 42-164 19-151 (198)
315 PRK09436 thrA bifunctional asp 85.7 4 8.6E-05 45.0 9.3 112 39-155 462-604 (819)
316 PRK05597 molybdopterin biosynt 85.5 4.3 9.2E-05 40.2 8.7 36 41-77 27-62 (355)
317 PRK15116 sulfur acceptor prote 85.5 4.8 0.0001 38.5 8.7 145 42-205 30-191 (268)
318 PRK00683 murD UDP-N-acetylmura 85.5 2 4.3E-05 43.2 6.4 77 44-126 5-86 (418)
319 PRK14851 hypothetical protein; 85.4 3.6 7.8E-05 44.3 8.6 111 42-155 43-164 (679)
320 PRK10433 putative RNA methyltr 85.3 11 0.00025 35.1 10.9 35 42-77 2-38 (228)
321 COG0451 WcaG Nucleoside-diphos 85.0 5.5 0.00012 37.1 8.9 30 45-75 3-32 (314)
322 PF02737 3HCDH_N: 3-hydroxyacy 85.0 0.63 1.4E-05 41.5 2.3 63 44-111 1-90 (180)
323 cd06379 PBP1_iGluR_NMDA_NR1 N- 85.0 27 0.00059 34.0 14.1 145 106-261 63-234 (377)
324 PRK00676 hemA glutamyl-tRNA re 84.8 1.9 4.1E-05 42.5 5.8 59 41-106 173-233 (338)
325 PRK05690 molybdopterin biosynt 84.6 5.9 0.00013 37.1 8.8 35 42-77 32-66 (245)
326 COG0616 SppA Periplasmic serin 84.5 2.1 4.5E-05 41.8 5.9 80 182-277 60-142 (317)
327 PLN02986 cinnamyl-alcohol dehy 84.3 9.3 0.0002 36.3 10.2 31 43-73 6-36 (322)
328 PRK07688 thiamine/molybdopteri 84.2 4.8 0.0001 39.6 8.3 35 42-77 24-58 (339)
329 PRK06179 short chain dehydroge 84.2 6.5 0.00014 36.2 8.9 75 44-134 6-83 (270)
330 PLN02237 glyceraldehyde-3-phos 84.2 4.6 9.9E-05 41.3 8.3 87 42-131 75-196 (442)
331 PLN02778 3,5-epimerase/4-reduc 83.6 6.7 0.00015 37.4 8.9 31 40-70 7-37 (298)
332 PRK08644 thiamine biosynthesis 83.5 5.7 0.00012 36.3 8.0 34 42-76 28-61 (212)
333 TIGR00705 SppA_67K signal pept 83.5 2.3 5E-05 45.0 6.1 82 179-276 306-391 (584)
334 cd07020 Clp_protease_NfeD_1 No 83.4 3.7 8.1E-05 36.6 6.6 53 223-276 18-74 (187)
335 PRK08057 cobalt-precorrin-6x r 83.3 5.8 0.00013 37.4 8.2 84 44-128 4-97 (248)
336 COG0373 HemA Glutamyl-tRNA red 83.3 1.7 3.6E-05 44.1 4.7 73 35-109 170-248 (414)
337 TIGR02355 moeB molybdopterin s 83.2 5 0.00011 37.5 7.6 35 42-77 24-58 (240)
338 PRK14852 hypothetical protein; 83.1 4.5 9.8E-05 45.2 8.3 117 42-161 332-459 (989)
339 PRK14106 murD UDP-N-acetylmura 82.9 3.2 6.9E-05 41.8 6.6 79 44-126 7-95 (450)
340 PLN02206 UDP-glucuronate decar 82.9 4.2 9E-05 41.4 7.5 35 38-72 115-149 (442)
341 PTZ00082 L-lactate dehydrogena 82.8 12 0.00026 36.5 10.4 85 43-132 7-128 (321)
342 PRK11908 NAD-dependent epimera 82.5 4.4 9.6E-05 39.1 7.3 30 44-74 3-33 (347)
343 PRK10538 malonic semialdehyde 82.5 4.6 0.0001 36.8 7.1 31 44-75 2-32 (248)
344 PRK10949 protease 4; Provision 82.5 2.8 6.2E-05 44.6 6.3 82 179-276 324-409 (618)
345 TIGR02197 heptose_epim ADP-L-g 82.2 8 0.00017 36.2 8.8 86 45-132 1-114 (314)
346 cd02071 MM_CoA_mut_B12_BD meth 82.2 9 0.0002 31.7 8.1 92 54-160 14-112 (122)
347 cd01493 APPBP1_RUB Ubiquitin a 82.1 8.5 0.00018 39.2 9.3 118 42-164 20-150 (425)
348 PRK10669 putative cation:proto 82.0 4.1 8.9E-05 42.6 7.3 66 44-114 419-496 (558)
349 PRK14030 glutamate dehydrogena 82.0 11 0.00023 38.7 10.0 112 40-158 226-366 (445)
350 PLN02650 dihydroflavonol-4-red 82.0 10 0.00023 36.6 9.7 31 42-72 5-35 (351)
351 cd01487 E1_ThiF_like E1_ThiF_l 82.0 7.8 0.00017 34.3 8.0 33 44-77 1-33 (174)
352 PRK00141 murD UDP-N-acetylmura 81.8 3.7 8.1E-05 42.0 6.8 86 34-126 7-101 (473)
353 PRK09291 short chain dehydroge 81.6 12 0.00025 34.0 9.4 29 44-72 4-32 (257)
354 PTZ00353 glycosomal glyceralde 81.3 6.3 0.00014 39.0 7.8 30 43-74 3-33 (342)
355 COG1184 GCD2 Translation initi 81.1 9.3 0.0002 37.1 8.7 129 99-236 119-260 (301)
356 PRK10217 dTDP-glucose 4,6-dehy 81.1 9.9 0.00021 36.6 9.2 31 44-74 3-33 (355)
357 PRK14194 bifunctional 5,10-met 81.1 5.2 0.00011 38.9 7.0 59 42-114 159-217 (301)
358 cd01080 NAD_bind_m-THF_DH_Cycl 81.1 3.9 8.4E-05 36.2 5.7 57 41-112 43-100 (168)
359 PRK08762 molybdopterin biosynt 81.0 4.9 0.00011 39.9 7.1 35 41-76 134-168 (376)
360 cd02072 Glm_B12_BD B12 binding 81.0 8.8 0.00019 32.6 7.6 95 53-159 13-117 (128)
361 PRK07878 molybdopterin biosynt 81.0 7.1 0.00015 39.1 8.3 36 41-77 41-76 (392)
362 cd07021 Clp_protease_NfeD_like 80.8 5.6 0.00012 35.5 6.7 52 224-276 19-71 (178)
363 PLN02306 hydroxypyruvate reduc 80.8 3.6 7.8E-05 41.3 6.0 63 43-109 166-246 (386)
364 PLN02427 UDP-apiose/xylose syn 80.3 9.1 0.0002 37.6 8.7 31 42-72 14-45 (386)
365 PRK06223 malate dehydrogenase; 80.1 19 0.00041 34.4 10.6 84 43-131 3-118 (307)
366 PLN02572 UDP-sulfoquinovose sy 79.8 9.8 0.00021 38.6 8.9 28 43-70 48-75 (442)
367 COG1042 Acyl-CoA synthetase (N 79.8 2.1 4.5E-05 45.4 4.1 174 81-285 306-489 (598)
368 COG0300 DltE Short-chain dehyd 79.7 8.7 0.00019 36.7 8.0 84 43-135 7-95 (265)
369 cd07013 S14_ClpP Caseinolytic 79.7 4.6 0.0001 35.3 5.7 54 223-276 17-71 (162)
370 PLN02700 homoserine dehydrogen 79.6 9 0.00019 38.4 8.4 28 99-126 109-136 (377)
371 PTZ00075 Adenosylhomocysteinas 79.6 4.8 0.0001 41.6 6.5 64 44-111 256-321 (476)
372 PLN02653 GDP-mannose 4,6-dehyd 79.3 14 0.00031 35.4 9.6 29 43-71 7-35 (340)
373 TIGR02371 ala_DH_arch alanine 79.3 3 6.6E-05 40.7 4.9 88 39-130 125-222 (325)
374 PLN00203 glutamyl-tRNA reducta 79.2 1.8 3.8E-05 45.2 3.4 35 42-77 266-300 (519)
375 PRK06141 ornithine cyclodeamin 79.1 3.1 6.7E-05 40.3 4.9 81 39-124 122-213 (314)
376 TIGR01746 Thioester-redct thio 79.0 7.2 0.00016 37.0 7.4 30 45-74 2-33 (367)
377 PRK08177 short chain dehydroge 78.6 8 0.00017 34.6 7.2 79 44-134 3-81 (225)
378 COG1087 GalE UDP-glucose 4-epi 78.6 8.3 0.00018 37.7 7.4 87 44-132 2-117 (329)
379 cd01391 Periplasmic_Binding_Pr 78.5 44 0.00096 29.0 14.2 88 180-275 124-220 (269)
380 PLN02989 cinnamyl-alcohol dehy 78.4 18 0.00038 34.4 9.9 29 42-70 5-33 (325)
381 KOG4354 N-acetyl-gamma-glutamy 78.4 14 0.00031 35.1 8.7 93 35-127 12-114 (340)
382 PRK03659 glutathione-regulated 78.4 6.4 0.00014 41.7 7.3 78 44-124 402-490 (601)
383 TIGR01182 eda Entner-Doudoroff 78.2 12 0.00026 34.3 8.2 106 39-166 7-112 (204)
384 PRK13940 glutamyl-tRNA reducta 78.0 2.7 5.9E-05 42.5 4.2 67 41-110 180-253 (414)
385 PRK08289 glyceraldehyde-3-phos 77.9 11 0.00024 38.8 8.6 90 42-132 127-260 (477)
386 PRK12825 fabG 3-ketoacyl-(acyl 77.8 11 0.00025 33.5 7.9 32 44-75 8-39 (249)
387 cd06267 PBP1_LacI_sugar_bindin 77.2 33 0.00072 30.4 10.8 45 196-242 138-184 (264)
388 PRK06395 phosphoribosylamine-- 77.2 11 0.00024 38.3 8.4 82 42-126 2-92 (435)
389 KOG0069 Glyoxylate/hydroxypyru 77.1 22 0.00047 35.2 10.0 103 40-150 160-270 (336)
390 TIGR02964 xanthine_xdhC xanthi 77.1 24 0.00051 33.2 10.0 88 42-131 100-195 (246)
391 PRK09496 trkA potassium transp 76.7 7.4 0.00016 39.0 7.0 85 44-131 2-99 (453)
392 PTZ00325 malate dehydrogenase; 76.6 17 0.00038 35.5 9.3 89 41-133 7-126 (321)
393 PLN02260 probable rhamnose bio 76.6 11 0.00025 40.0 8.7 82 41-132 379-481 (668)
394 TIGR03589 PseB UDP-N-acetylglu 76.5 14 0.00031 35.4 8.7 87 44-133 6-126 (324)
395 PRK12828 short chain dehydroge 76.4 18 0.0004 32.0 8.8 80 44-133 9-91 (239)
396 TIGR01472 gmd GDP-mannose 4,6- 76.4 20 0.00043 34.5 9.6 29 44-72 2-30 (343)
397 PRK00045 hemA glutamyl-tRNA re 76.3 3.6 7.9E-05 41.6 4.6 36 41-77 181-216 (423)
398 PRK05600 thiamine biosynthesis 76.0 8.3 0.00018 38.4 7.0 35 41-76 40-74 (370)
399 COG1064 AdhP Zn-dependent alco 76.0 9.4 0.0002 37.7 7.2 33 42-76 167-199 (339)
400 PRK14188 bifunctional 5,10-met 75.9 8.4 0.00018 37.4 6.8 75 42-135 158-232 (296)
401 PRK10084 dTDP-glucose 4,6 dehy 75.8 15 0.00032 35.3 8.6 31 44-74 2-32 (352)
402 PRK05568 flavodoxin; Provision 75.8 22 0.00047 29.6 8.6 61 93-157 45-116 (142)
403 PRK06182 short chain dehydroge 75.6 20 0.00044 33.0 9.2 77 44-134 5-84 (273)
404 PF02844 GARS_N: Phosphoribosy 75.6 4.3 9.3E-05 33.1 4.0 46 108-158 47-93 (100)
405 TIGR01763 MalateDH_bact malate 75.5 18 0.00039 35.0 9.0 60 44-108 3-78 (305)
406 PRK12549 shikimate 5-dehydroge 75.4 4.3 9.4E-05 38.8 4.6 68 41-111 126-204 (284)
407 PRK07340 ornithine cyclodeamin 75.3 1.8 3.8E-05 41.9 2.0 84 39-127 122-214 (304)
408 cd06362 PBP1_mGluR Ligand bind 75.0 94 0.002 31.0 14.5 78 178-261 170-251 (452)
409 PLN02260 probable rhamnose bio 75.0 17 0.00037 38.7 9.5 29 43-71 7-37 (668)
410 PRK09288 purT phosphoribosylgl 74.9 12 0.00026 36.9 7.8 88 34-125 4-100 (395)
411 PRK12483 threonine dehydratase 74.8 18 0.00038 37.9 9.3 157 89-268 74-239 (521)
412 cd01339 LDH-like_MDH L-lactate 74.7 15 0.00032 35.2 8.1 81 46-131 2-114 (300)
413 PRK05693 short chain dehydroge 74.5 19 0.00042 33.1 8.8 77 44-134 3-82 (274)
414 PRK08125 bifunctional UDP-gluc 74.4 15 0.00032 39.3 8.8 32 42-73 315-347 (660)
415 PRK05086 malate dehydrogenase; 74.4 23 0.0005 34.3 9.5 87 44-133 2-119 (312)
416 PF10100 DUF2338: Uncharacteri 74.2 16 0.00035 37.0 8.3 79 56-138 39-125 (429)
417 TIGR01202 bchC 2-desacetyl-2-h 74.2 11 0.00024 35.8 7.2 33 44-77 147-179 (308)
418 PRK03562 glutathione-regulated 73.7 10 0.00023 40.3 7.4 78 43-123 401-489 (621)
419 PRK07411 hypothetical protein; 73.6 17 0.00036 36.5 8.5 35 42-77 38-72 (390)
420 PRK09224 threonine dehydratase 73.4 55 0.0012 34.0 12.5 158 88-268 56-222 (504)
421 PRK08264 short chain dehydroge 73.4 23 0.0005 31.7 8.8 31 44-75 8-39 (238)
422 cd07016 S14_ClpP_1 Caseinolyti 73.3 10 0.00023 32.6 6.2 55 222-276 16-71 (160)
423 PRK06841 short chain dehydroge 72.7 19 0.0004 32.7 8.0 81 43-134 16-99 (255)
424 PRK08639 threonine dehydratase 72.7 93 0.002 31.4 13.7 147 100-267 73-231 (420)
425 TIGR02992 ectoine_eutC ectoine 72.5 7.2 0.00016 38.0 5.5 81 41-126 128-220 (326)
426 PRK05653 fabG 3-ketoacyl-(acyl 72.4 24 0.00052 31.3 8.6 33 43-76 6-38 (246)
427 cd06367 PBP1_iGluR_NMDA N-term 72.3 65 0.0014 31.0 12.2 151 100-261 37-215 (362)
428 TIGR01035 hemA glutamyl-tRNA r 72.3 6.5 0.00014 39.7 5.3 36 41-77 179-214 (417)
429 PTZ00079 NADP-specific glutama 72.3 27 0.00058 36.0 9.6 32 41-73 236-267 (454)
430 PF02571 CbiJ: Precorrin-6x re 72.2 12 0.00026 35.3 6.7 83 44-128 2-98 (249)
431 PF13478 XdhC_C: XdhC Rossmann 71.7 11 0.00023 32.2 5.7 81 45-131 1-88 (136)
432 PLN02550 threonine dehydratase 71.6 26 0.00057 37.2 9.7 159 88-268 145-311 (591)
433 cd05294 LDH-like_MDH_nadp A la 71.6 49 0.0011 32.0 11.0 31 44-75 2-34 (309)
434 PRK09186 flagellin modificatio 71.5 15 0.00033 33.2 7.1 81 44-129 6-89 (256)
435 PRK12829 short chain dehydroge 71.5 23 0.00051 32.0 8.4 31 43-74 12-42 (264)
436 PRK08267 short chain dehydroge 71.4 16 0.00034 33.4 7.3 80 44-134 3-87 (260)
437 PLN00106 malate dehydrogenase 71.3 36 0.00078 33.3 10.0 25 43-67 19-43 (323)
438 TIGR00507 aroE shikimate 5-deh 71.2 11 0.00023 35.6 6.2 106 42-155 117-234 (270)
439 PRK14179 bifunctional 5,10-met 71.2 14 0.00031 35.6 7.1 59 42-114 158-216 (284)
440 PRK03369 murD UDP-N-acetylmura 71.0 10 0.00022 39.1 6.4 86 34-126 6-97 (488)
441 cd01078 NAD_bind_H4MPT_DH NADP 70.8 6.4 0.00014 34.9 4.4 36 41-77 27-62 (194)
442 COG1086 Predicted nucleoside-d 70.8 15 0.00032 38.8 7.4 98 34-133 244-377 (588)
443 PLN02477 glutamate dehydrogena 70.8 17 0.00037 36.9 7.8 34 40-74 204-237 (410)
444 PRK05993 short chain dehydroge 70.8 21 0.00045 33.2 8.0 77 44-134 6-86 (277)
445 PRK06015 keto-hydroxyglutarate 70.7 26 0.00056 32.1 8.3 100 46-166 9-108 (201)
446 PRK08291 ectoine utilization p 70.7 8.2 0.00018 37.6 5.4 82 40-126 130-223 (330)
447 PLN02686 cinnamoyl-CoA reducta 70.5 24 0.00051 34.7 8.7 31 43-73 54-84 (367)
448 COG0151 PurD Phosphoribosylami 70.5 19 0.0004 36.7 7.9 83 43-126 1-90 (428)
449 cd05292 LDH_2 A subgroup of L- 70.3 22 0.00048 34.3 8.3 84 44-131 2-115 (308)
450 cd01489 Uba2_SUMO Ubiquitin ac 70.2 29 0.00062 33.9 9.0 33 44-77 1-33 (312)
451 COG0794 GutQ Predicted sugar p 70.2 19 0.00041 33.0 7.3 101 35-158 33-139 (202)
452 PRK08591 acetyl-CoA carboxylas 70.0 27 0.00058 35.2 9.2 30 43-74 3-32 (451)
453 PRK05650 short chain dehydroge 70.0 27 0.00058 32.1 8.6 27 44-70 2-28 (270)
454 PRK08306 dipicolinate synthase 69.9 28 0.00061 33.5 8.9 147 44-205 4-176 (296)
455 PRK01710 murD UDP-N-acetylmura 69.7 16 0.00036 37.0 7.6 77 44-126 16-104 (458)
456 PRK09496 trkA potassium transp 69.2 25 0.00054 35.2 8.7 85 42-129 231-328 (453)
457 TIGR00112 proC pyrroline-5-car 69.1 19 0.00041 33.5 7.3 56 84-141 30-87 (245)
458 PLN02696 1-deoxy-D-xylulose-5- 69.0 30 0.00065 35.6 9.1 82 43-126 58-176 (454)
459 TIGR01534 GAPDH-I glyceraldehy 68.9 20 0.00043 35.3 7.6 42 90-132 80-122 (327)
460 PRK05867 short chain dehydroge 68.3 15 0.00032 33.5 6.3 83 44-134 11-96 (253)
461 PRK05784 phosphoribosylamine-- 68.3 32 0.0007 35.6 9.4 27 43-70 1-29 (486)
462 PRK12815 carB carbamoyl phosph 68.0 17 0.00037 41.3 7.9 34 43-77 8-51 (1068)
463 PRK02472 murD UDP-N-acetylmura 67.9 16 0.00034 36.7 7.0 78 44-126 7-95 (447)
464 COG1179 Dinucleotide-utilizing 67.9 28 0.0006 33.1 7.9 113 44-162 32-155 (263)
465 PF02254 TrkA_N: TrkA-N domain 67.8 13 0.00028 29.7 5.2 74 45-121 1-84 (116)
466 PRK06463 fabG 3-ketoacyl-(acyl 67.8 36 0.00079 30.9 8.9 78 44-134 9-89 (255)
467 PRK06552 keto-hydroxyglutarate 67.8 31 0.00067 31.7 8.3 107 36-160 9-117 (213)
468 PRK10637 cysG siroheme synthas 67.6 11 0.00024 38.5 5.9 81 38-125 8-99 (457)
469 PRK13789 phosphoribosylamine-- 67.5 19 0.00042 36.5 7.5 84 41-126 3-95 (426)
470 TIGR03301 PhnW-AepZ 2-aminoeth 67.3 37 0.0008 32.2 9.2 86 179-268 72-160 (355)
471 PRK06153 hypothetical protein; 67.0 15 0.00033 37.0 6.4 34 43-77 177-210 (393)
472 PRK02261 methylaspartate mutas 66.8 30 0.00064 29.5 7.4 94 54-159 18-121 (137)
473 TIGR01124 ilvA_2Cterm threonin 66.7 64 0.0014 33.5 11.3 158 88-268 53-219 (499)
474 cd05293 LDH_1 A subgroup of L- 66.6 37 0.00081 32.9 9.0 35 42-77 3-38 (312)
475 PRK12767 carbamoyl phosphate s 66.6 37 0.0008 32.3 9.0 32 43-77 2-35 (326)
476 TIGR02991 ectoine_eutB ectoine 66.5 1.1E+02 0.0024 29.5 12.3 132 99-245 66-204 (317)
477 COG0702 Predicted nucleoside-d 66.4 7.8 0.00017 35.3 4.1 30 44-73 2-31 (275)
478 PRK03803 murD UDP-N-acetylmura 66.4 19 0.00041 36.3 7.2 76 45-126 9-95 (448)
479 PRK07877 hypothetical protein; 66.3 19 0.0004 39.3 7.4 90 42-134 107-207 (722)
480 PRK12744 short chain dehydroge 66.2 15 0.00034 33.4 6.1 85 44-134 10-99 (257)
481 PRK05557 fabG 3-ketoacyl-(acyl 66.2 42 0.00092 29.7 8.8 27 44-70 7-33 (248)
482 PRK06756 flavodoxin; Provision 66.2 34 0.00074 28.8 7.8 88 55-158 19-121 (148)
483 cd01336 MDH_cytoplasmic_cytoso 66.0 19 0.0004 35.2 6.8 25 42-66 2-26 (325)
484 TIGR00514 accC acetyl-CoA carb 66.0 32 0.0007 34.8 8.8 30 44-75 4-33 (449)
485 TIGR00050 rRNA_methyl_1 RNA me 65.9 85 0.0019 29.1 10.9 35 42-77 3-39 (233)
486 TIGR01809 Shik-DH-AROM shikima 65.7 13 0.00028 35.5 5.5 69 42-111 125-202 (282)
487 PRK00421 murC UDP-N-acetylmura 65.7 16 0.00034 37.1 6.5 76 44-126 9-93 (461)
488 PLN02353 probable UDP-glucose 65.6 35 0.00076 35.2 9.0 27 43-70 2-30 (473)
489 cd00650 LDH_MDH_like NAD-depen 65.4 75 0.0016 29.7 10.6 31 46-77 2-36 (263)
490 PRK06057 short chain dehydroge 65.3 29 0.00062 31.6 7.7 78 44-134 9-89 (255)
491 PRK04308 murD UDP-N-acetylmura 65.1 15 0.00033 37.0 6.3 77 44-126 7-94 (445)
492 KOG2774 NAD dependent epimeras 64.8 1.3E+02 0.0029 28.7 13.1 200 40-259 42-269 (366)
493 cd06361 PBP1_GPC6A_like Ligand 64.8 29 0.00063 34.6 8.1 37 99-135 234-270 (403)
494 PRK08628 short chain dehydroge 64.8 20 0.00043 32.6 6.5 81 44-134 9-93 (258)
495 TIGR02853 spore_dpaA dipicolin 64.4 55 0.0012 31.4 9.6 147 44-205 3-175 (287)
496 PF02719 Polysacc_synt_2: Poly 64.2 19 0.0004 35.0 6.3 89 45-133 1-129 (293)
497 PRK08340 glucose-1-dehydrogena 64.2 26 0.00056 32.0 7.1 82 44-134 2-86 (259)
498 PRK08213 gluconate 5-dehydroge 64.2 17 0.00037 33.1 5.9 91 36-134 6-99 (259)
499 PRK12938 acetyacetyl-CoA reduc 64.2 36 0.00078 30.6 8.0 81 45-134 6-91 (246)
500 PRK07577 short chain dehydroge 64.0 45 0.00098 29.6 8.6 73 44-134 5-78 (234)
No 1
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=100.00 E-value=1.8e-72 Score=538.86 Aligned_cols=300 Identities=76% Similarity=1.219 Sum_probs=280.7
Q ss_pred CCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec--CcccccCHHHhhccCCCcE
Q 019500 25 RSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPVFNTVAEAKAETKANA 102 (340)
Q Consensus 25 ~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~--G~p~y~sl~dip~~~~vDl 102 (340)
.-|++| +.++|.+++++|+|+|.+|+.|++|.+.+++||.++|++|||+++|++++ |+|||+|++|+++++++|+
T Consensus 15 ~~~~~~---~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~ 91 (317)
T PTZ00187 15 ARSSTS---APRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADA 91 (317)
T ss_pred HHHhcc---CccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCE
Confidence 357888 89999999999999999999999999999999999999999999889999 9999999999998666999
Q ss_pred EEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCc
Q 019500 103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGR 182 (340)
Q Consensus 103 avi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~ 182 (340)
++|++|+..++++++||+++|++.++++|+||++.++.++++++++++|+|++||||+|++||....++++|...++||+
T Consensus 92 avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~ 171 (317)
T PTZ00187 92 SVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGK 171 (317)
T ss_pred EEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCC
Confidence 99999999999999999999999999999999999988887766457999999999999999985445666766678999
Q ss_pred EEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCC
Q 019500 183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGT 262 (340)
Q Consensus 183 valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~ 262 (340)
||+|||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|.+|++++++++|+++.++
T Consensus 172 VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~ 251 (317)
T PTZ00187 172 IGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPI 251 (317)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999998667
Q ss_pred CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500 263 EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336 (340)
Q Consensus 263 ~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~ 336 (340)
+||||+||+|||++.|+++|||| ||++++.|+++.++++|+|+|++++++++||.++++..++++
T Consensus 252 ~KPVVa~~aGrsap~G~r~gHaG---------Ai~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 252 KKPVVSFIAGITAPPGRRMGHAG---------AIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred CCcEEEEEecCCCCCCCcccchh---------hhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 99999999999985599999999 999888899999999999999999999999999999988765
No 2
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=100.00 E-value=7.4e-72 Score=532.70 Aligned_cols=293 Identities=93% Similarity=1.366 Sum_probs=268.3
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
.+|.+++.+|+|+|.+++.|+.+.+.+++||.+++++|||++.+++++|+|||+|++|+|++.+||++++++|++.++++
T Consensus 6 ~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~a 85 (300)
T PLN00125 6 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAA 85 (300)
T ss_pred eEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHHH
Confidence 77878889999999999999999999999999999999999766899999999999999984348999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHH
Q 019500 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY 194 (340)
Q Consensus 116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~ 194 (340)
++||+++|+|.++|+|+||+|.+++++...++|++|+|++||||+|++||. +++.++.+ ..+++|+||||||||+++.
T Consensus 86 l~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~ 164 (300)
T PLN00125 86 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPG-YIHKPGRIGIVSRSGTLTY 164 (300)
T ss_pred HHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCC-CCCCCCcEEEEeCCccHHH
Confidence 999999999999999999999886555544448999999999999999998 66655533 3467999999999999999
Q ss_pred HHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 019500 195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274 (340)
Q Consensus 195 ~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs 274 (340)
++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|++|+.++|+++|+++++++||||+||+|||
T Consensus 165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs 244 (300)
T PLN00125 165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT 244 (300)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 99999999999999999999994449999999999999999999999999988889999999999988999999999999
Q ss_pred CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhcCC
Q 019500 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQRGL 338 (340)
Q Consensus 275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~~~ 338 (340)
++.|+++|||| ||++++.|++++|+++|+|+|+++++|++||+++++.+++..||
T Consensus 245 ~~~g~~~sHTG---------ala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~ 299 (300)
T PLN00125 245 APPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299 (300)
T ss_pred CCCCCCccchh---------hhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence 83388899999 99756668999999999999999999999999999999988776
No 3
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=100.00 E-value=1.3e-71 Score=530.08 Aligned_cols=289 Identities=65% Similarity=1.071 Sum_probs=261.5
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
+++.+++++|+|+|.+++.|+.+.++|+++||+.++||||+..+++++|+|||+|++|+|++.+||++++++|++.++++
T Consensus 2 ~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~ 81 (291)
T PRK05678 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADA 81 (291)
T ss_pred ceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHH
Confidence 35667788999999999999999999999999988899999212899999999999999983239999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHH
Q 019500 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTY 194 (340)
Q Consensus 116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~ 194 (340)
+++|+++|+|.++|+|+||++++.+++.+.+ +++|+|++||||+|++||. +++.+| +...+++|+||+|||||+++.
T Consensus 82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a-~~~girvlGPNc~Gi~~~~~~~~~~~-~~~~~~~G~valiSQSGal~~ 159 (291)
T PRK05678 82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYL-ERKKTRLIGPNCPGIITPGECKIGIM-PGHIHKKGRVGVVSRSGTLTY 159 (291)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCCcccccccceeeec-CCCCCCCCCEEEEeccHHHHH
Confidence 9999999999999999999987767888876 8999999999999999998 655555 333467999999999999999
Q ss_pred HHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCC
Q 019500 195 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274 (340)
Q Consensus 195 ~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs 274 (340)
++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++.+++++|+++. ++||||+||+|||
T Consensus 160 ~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~-~~KPVV~lk~Grs 238 (291)
T PRK05678 160 EAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKAN-VTKPVVGYIAGVT 238 (291)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHc-CCCCEEEEEecCC
Confidence 999999999999999999999964479999999999999999999999999888888889998865 6899999999999
Q ss_pred CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336 (340)
Q Consensus 275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~ 336 (340)
++.|+++|||| ||++++.|++.+|+++|+|+|+++++|++||+|+++++++.|
T Consensus 239 ~~~g~~~sHTG---------ala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 239 APPGKRMGHAG---------AIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred CCCCCcccchh---------hhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 94388899999 998777899999999999999999999999999999988643
No 4
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=100.00 E-value=4.4e-71 Score=525.19 Aligned_cols=282 Identities=65% Similarity=1.065 Sum_probs=258.3
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
.+++.+|+|+|.+++.|+.+.++|+.+||+++++|||++.+++++|+|||+|++|+|++.+||++++++|++.+++++++
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e 82 (286)
T TIGR01019 3 LDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFE 82 (286)
T ss_pred ecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999444899999999999999984238999999999999999999
Q ss_pred HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHHHH
Q 019500 119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 197 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~~~ 197 (340)
|.++|+|.++|+|+||+|.+++++.+++ +++|+|++||||+|++||. +++.+|.+ ..++||+||+|||||+++.+++
T Consensus 83 ~~~~Gvk~avIis~Gf~e~~~~~l~~~a-~~~girilGPNc~Giin~~~~~~~~~~~-~~~~~G~ValiSQSG~l~~~~~ 160 (286)
T TIGR01019 83 AIDAGIELIVCITEGIPVHDMLKVKRYM-EESGTRLIGPNCPGIITPGECKIGIMPG-HIHKPGNVGIVSRSGTLTYEAV 160 (286)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHH-HHcCCEEECCCCceEEcccccceeeccc-cCCCCCcEEEEeccHHHHHHHH
Confidence 9999999999999999998777888876 8999999999999999998 77777644 3467999999999999999999
Q ss_pred HHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Q 019500 198 FQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277 (340)
Q Consensus 198 ~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs~~~ 277 (340)
+|++++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|+++++++++++|++++ ++||||++|+|||++.
T Consensus 161 ~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~-~~KPVV~lk~Grs~~~ 239 (286)
T TIGR01019 161 HQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQN-MSKPVVGFIAGATAPP 239 (286)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhc-CCCCEEEEEecCCCCc
Confidence 999999999999999999974479999999999999999999999999998888999998874 6899999999999833
Q ss_pred CCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHH
Q 019500 278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332 (340)
Q Consensus 278 g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~ 332 (340)
|+++|||| ||+++..|++++|+++|||+|+++++|++||+|.+++.
T Consensus 240 g~~~sHTG---------ala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 240 GKRMGHAG---------AIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred cccccchh---------hhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 88899999 99866668999999999999999999999999999864
No 5
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=100.00 E-value=1.2e-66 Score=523.89 Aligned_cols=272 Identities=26% Similarity=0.369 Sum_probs=248.9
Q ss_pred cccccCcCCeEEEEeCCCC---CcchHHHHHHHHcCCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 34 APAVFVDKNTRVICQGITG---KNGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasg---k~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
|++||.|++|+|+ |+|. ++|+.+.++|+++||+ .+|||||++ +++.|+|||+|++|+|+ .+|++++++|+
T Consensus 1 l~~l~~p~siavv--GaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~--~~Dlavi~vp~ 74 (447)
T TIGR02717 1 LEHLFNPKSVAVI--GASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPD--PVDLAVIVVPA 74 (447)
T ss_pred CccccCCCEEEEE--ccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCC--CCCEEEEecCH
Confidence 5689999998777 9985 5688899999999996 678999998 79999999999999997 59999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhh------HHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCCCCCc
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHD------MVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIHKPGR 182 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~------~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~~~G~ 182 (340)
+.+++++++|.++|+|.+||+|+||+|.+ .+++.+++ |++|+|++||||+|++||. +++.+|.+. .+++|+
T Consensus 75 ~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a-~~~girvlGPnc~G~~~~~~~l~~~~~~~-~~~~G~ 152 (447)
T TIGR02717 75 KYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIA-RKYGMRLLGPNCLGIINTHIKLNATFAPT-MPKKGG 152 (447)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHH-HHcCCEEEecCeeeEecCCCCeeeecCCC-CCCCCC
Confidence 99999999999999999999999999854 24566665 8999999999999999999 888887554 467999
Q ss_pred EEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-
Q 019500 183 IGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG- 261 (340)
Q Consensus 183 valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r- 261 (340)
||+|||||+++.++++|+.++|+|||++||+||++ |+++.|+|+||.+||+|++|++|+|+ ++|+++|++++|
T Consensus 153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--d~~~~d~l~~l~~D~~t~~I~ly~E~----~~~~~~f~~aa~~ 226 (447)
T TIGR02717 153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDTKVILLYLEG----IKDGRKFLKTARE 226 (447)
T ss_pred EEEEechHHHHHHHHHHHHhcCCCcceEEECCchh--hCCHHHHHHHHhhCCCCCEEEEEecC----CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999998 678899999876
Q ss_pred --CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500 262 --TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333 (340)
Q Consensus 262 --~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~ 333 (340)
++||||+||+|||+. |++ +|||| |++ |++++|+++|+|+|+++++|++||+++++.+-
T Consensus 227 a~~~KPVv~~k~Grs~~-g~~aa~sHtg---------ala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~l~ 288 (447)
T TIGR02717 227 ISKKKPIVVLKSGTSEA-GAKAASSHTG---------ALA----GSDEAYDAAFKQAGVIRADSIEELFDLARLLS 288 (447)
T ss_pred HcCCCCEEEEecCCChh-hhhhhhhccc---------ccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHHHh
Confidence 689999999999998 776 69999 998 99999999999999999999999999998633
No 6
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2e-55 Score=408.68 Aligned_cols=290 Identities=67% Similarity=1.076 Sum_probs=277.4
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
++|.+++++|+|+|.++++|++|.+.++++|++++++|+|+++|.++.|+|+|.+++|..+++..|+.+||+|+.++.+.
T Consensus 2 ~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aada 81 (293)
T COG0074 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAADA 81 (293)
T ss_pred ceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999988789999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEEEecChHHHHH
Q 019500 116 ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYE 195 (340)
Q Consensus 116 v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~ 195 (340)
+.||+++|++.++++|.|++..|+.++.+.+ ++.|++++||||.|++.|..+.++++|...++||+|++||.||+++++
T Consensus 82 i~EAida~i~liv~ITEgIP~~D~~~~~~~a-~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTyE 160 (293)
T COG0074 82 ILEAIDAGIKLVVIITEGIPVLDMLELKRYA-REKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYE 160 (293)
T ss_pred HHHHHhCCCcEEEEEeCCCCHHHHHHHHHHH-HhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHHH
Confidence 9999999999999999999999999988887 888999999999999999978899999988999999999999999999
Q ss_pred HHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCC
Q 019500 196 AVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLT 274 (340)
Q Consensus 196 ~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs 274 (340)
+..+..+.|+|+|+.|++|++.+.++++.|+|+.|.+||+|++|+|..|.+|+.+..+++|+++ . .+||||+|-+||+
T Consensus 161 ~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~t 239 (293)
T COG0074 161 AVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRT 239 (293)
T ss_pred HHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 5 4599999999999
Q ss_pred CCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHHHhc
Q 019500 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQR 336 (340)
Q Consensus 275 ~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~~~~ 336 (340)
+++|+|++|+| |+++++.|+++.+.++|+.+|+.+++++.++.++++.+++.+
T Consensus 240 ap~gkrmGhaG---------aiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 240 APEGKRMGHAG---------AIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred CCccchhhhhh---------hhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 99999999999 999999999999999999999999999999999999888654
No 7
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.4e-54 Score=388.21 Aligned_cols=311 Identities=73% Similarity=1.174 Sum_probs=292.7
Q ss_pred ccccccCCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhh
Q 019500 16 SSEICCGQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95 (340)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip 95 (340)
+.-+|--.+..|+.| ...|+.++.++|+++|.+||.|++|.+..++||.++|.+|||+.+|.+..|+|+|.|++|..
T Consensus 15 ~~~~~~~~~s~y~~T---~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~ 91 (329)
T KOG1255|consen 15 SLGILRVFKSLYNKT---ISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK 91 (329)
T ss_pred Ccchhhhhcchhhhh---hhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence 444554446689999 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCC
Q 019500 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG 175 (340)
Q Consensus 96 ~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~ 175 (340)
++..+|.-+|++||..+..+++|++++-++.+|++|+|+++.|+.++...+.++.+.|++||||.||++|..+.++++|.
T Consensus 92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg 171 (329)
T KOG1255|consen 92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG 171 (329)
T ss_pred HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence 88889999999999999999999999999999999999999999998877667888999999999999999999999999
Q ss_pred CCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHH
Q 019500 176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAA 255 (340)
Q Consensus 176 ~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~ 255 (340)
...++|.|++||+||+|.++...+..+.|+|.|.+|.+|++++.+++|-|+|+.|.+||+|+.|+|..|.+|..++++++
T Consensus 172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~ 251 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE 251 (329)
T ss_pred ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHH
Q 019500 256 LIKESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332 (340)
Q Consensus 256 f~~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~ 332 (340)
|+++.. ..||||-+.+|.++++|+|++|+| |+.++++|.+..+.++|+.+||++++++..|..++...
T Consensus 252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaG---------AIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~ 322 (329)
T KOG1255|consen 252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAG---------AIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEE 322 (329)
T ss_pred HHHHhccCCCCCceeEEeecccCCCcccccccc---------eeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHH
Confidence 999843 789999999999999999999999 99999999999999999999999999999999988877
Q ss_pred HHhcCC
Q 019500 333 FKQRGL 338 (340)
Q Consensus 333 ~~~~~~ 338 (340)
|.++.|
T Consensus 323 ~~~~kl 328 (329)
T KOG1255|consen 323 FLKLKL 328 (329)
T ss_pred HHhccC
Confidence 776654
No 8
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=1.1e-53 Score=438.16 Aligned_cols=283 Identities=28% Similarity=0.458 Sum_probs=235.7
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCC-------eEEEeeCCCCC-------CceecCcccccCHHHhhccC-CC
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGT-------KMVGGVTPKKG-------GTEHLGLPVFNTVAEAKAET-KA 100 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~-------~vv~~VnP~~~-------g~~i~G~p~y~sl~dip~~~-~v 100 (340)
.+|.++ ++-++.|. ....++.|+++.| .+.+.|+|..+ |+++.|+|+|++++|..+++ ++
T Consensus 5 ~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~ 79 (608)
T PLN02522 5 QLFSRT-TQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTA 79 (608)
T ss_pred eeecCC-ceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCC
Confidence 456554 45555664 5667788888765 25556888542 34578999999999999765 68
Q ss_pred cEEEEecChhhHHHH-HHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCC-----
Q 019500 101 NASAIYVPPPFAAAA-ILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMP----- 174 (340)
Q Consensus 101 Dlavi~vp~~~v~~~-v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~----- 174 (340)
|+.++|+|+..+.+. +++|.++|+|.+||+|+||+|.+++++.+.+ +++|+|++||||+|++||..++++.++
T Consensus 80 ~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~A-r~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~ 158 (608)
T PLN02522 80 DVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYA-RANNKVVIGPATVGGIQAGAFKIGDTAGTLDN 158 (608)
T ss_pred cEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHH-HHcCCEEECCCCCeeEccCccccccccccccc
Confidence 999999999887765 5555567999999999999999988888887 899999999999999999743333222
Q ss_pred ---CCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHH
Q 019500 175 ---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEE 251 (340)
Q Consensus 175 ---~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~ 251 (340)
+..++||+||+|||||++++++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|++|+|.+ .+
T Consensus 159 ~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiG---g~ 235 (608)
T PLN02522 159 IIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELG---GR 235 (608)
T ss_pred ccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecC---ch
Confidence 233579999999999999999999999999999999999999977899999999999999999999999943 46
Q ss_pred HHHHHHHHhC---CCCCEEEEEeCCCCC---CCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHH
Q 019500 252 DAAALIKESG---TEKPIVAFIAGLTAP---PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325 (340)
Q Consensus 252 ~~~~f~~a~r---~~KPVvvlk~Grs~~---~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el 325 (340)
++++|+++++ ++||||++|+|||++ .++++|||| |+++++.+++++++++|+|+|+++++|++||
T Consensus 236 ~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtG---------Aiag~~~~ta~~k~aAlr~aGv~vv~s~~El 306 (608)
T PLN02522 236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG---------AKSGGDMESAQAKNKALKDAGAIVPTSFEAL 306 (608)
T ss_pred hHHHHHHHHHHhcCCCCEEEEeccCCCccCcccccccccc---------ccccCCCccHHHHHHHHHHCCCeEeCCHHHH
Confidence 7778887665 789999999999994 255689999 9985555666999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 019500 326 GAAMLEVFKQR 336 (340)
Q Consensus 326 ~~~~~~~~~~~ 336 (340)
+++++.++++|
T Consensus 307 ~~~~~~~~~~~ 317 (608)
T PLN02522 307 EAAIKETFEKL 317 (608)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 9
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=100.00 E-value=1.5e-53 Score=438.28 Aligned_cols=274 Identities=25% Similarity=0.371 Sum_probs=250.2
Q ss_pred CCcccccCcCCeEEEEeCCCCC---cchHHHHHHHHcCCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec
Q 019500 32 PPAPAVFVDKNTRVICQGITGK---NGTFHTEQAIEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 32 ~~l~~lf~p~~iaViVvGasgk---~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v 107 (340)
.+|++||.|++++|+ |+|++ .|+.+.+||+++| + .+|||||++ +++.|++||+++.++|+ .+|+++++|
T Consensus 2 ~~l~~~~~p~svavi--gas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~--~~dlav~~v 74 (598)
T COG1042 2 RDLERLFAPKSIAVI--GASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPD--APDLAVIVV 74 (598)
T ss_pred CchhhhhCCceEEEe--eccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCC--CCCeeEEEe
Confidence 358999999999877 99976 4677889999988 5 777999999 79999999999999998 599999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCCChhhH------HHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCCCCC-C
Q 019500 108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDM------VRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPGYIH-K 179 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~------~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~~~~-~ 179 (340)
|+..+++++++|.++|++.+|++++||.|... .++.+ +++++++|++||||+|++++. ++|.+|.|.... .
T Consensus 75 ~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~-~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~ 153 (598)
T COG1042 75 PAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVE-AARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGR 153 (598)
T ss_pred chhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHH-HHHhcCceEeccccccccccccccccccCccccccc
Confidence 99999999999999999999999999987532 23334 458999999999999999999 999999886432 2
Q ss_pred CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 019500 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259 (340)
Q Consensus 180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a 259 (340)
+|+++|+||||+++..+++|+.+.++|||+++|.||++ |+++.|+++||.+|+.|++|.||+|+ .+|+++|+++
T Consensus 154 ~g~~afvsqsgav~~~il~~~~~~~~g~s~~vs~gn~a--d~~~~d~~~~~~~D~~tk~i~Ly~E~----~~~~r~fl~~ 227 (598)
T COG1042 154 GGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAA--DRDESDLLEYLADDPRTKAIGLYIEG----VKDGRKFLNA 227 (598)
T ss_pred CCCeEEEEechHHHHhccchhhhcCCceeEEEeecchh--hcCchHhHHHHhhCccceEEEEEecc----chhHHHHHHH
Confidence 89999999999999999999999999999999999998 99999999999999999999999998 6799999998
Q ss_pred hC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHHHH
Q 019500 260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333 (340)
Q Consensus 260 ~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~~~ 333 (340)
++ ++||+|++|+||+.. +++ .|||| +|+ |++.+|+++|+|+|++++++++||+|+++++.
T Consensus 228 a~~~~~~kpii~lk~gr~~~-~akAa~shTg---------sla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l~ 292 (598)
T COG1042 228 ARAAERKKPIIALKAGRSEA-GAKAAASHTG---------SLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKALS 292 (598)
T ss_pred HHHHhcCCCEEEEeccCCHH-HHHHHhcccc---------ccc----ccchhhHHHHHhhCceeccChHHHHHHHHHhc
Confidence 87 789999999999999 776 59999 998 99999999999999999999999999999754
No 10
>PRK06091 membrane protein FdrA; Validated
Probab=100.00 E-value=5e-40 Score=332.01 Aligned_cols=204 Identities=22% Similarity=0.328 Sum_probs=176.0
Q ss_pred cCcccccCHH-HhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 83 LGLPVFNTVA-EAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 83 ~G~p~y~sl~-dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
.++++|++.. ++|+ +|+++|++|++.+++++++|+++| +.++|+|+||+.+..+++.+++ +++|+|++|||| |
T Consensus 103 ~~~~t~~~a~~~lpe---~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~L~e~A-r~~GlrvmGPNC-G 176 (555)
T PRK06091 103 TQVRRWDSACQKLPD---ANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIRLKTRA-REKGLLVMGPDC-G 176 (555)
T ss_pred cccccHHHHHhcCCC---CCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHH-HHcCCEEECCCC-h
Confidence 3455555533 3443 699999999999999999999999 5678999999877788888887 899999999999 7
Q ss_pred cccCCCcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCC----CCCCHHHHHHHhhcCCCcc
Q 019500 162 VIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF----NGTNFVDCVTKFIADPQTE 237 (340)
Q Consensus 162 i~~p~~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~----~dv~~~d~l~~l~~Dp~T~ 237 (340)
+.|..+++++|.+. ++||+||+|||||+++.++++|+.++|+|||++||+||+.+ .|+++.|+|+||.+||+|+
T Consensus 177 ~~~i~gl~lsF~~~--~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~Tk 254 (555)
T PRK06091 177 TAMIAGTPLAFANV--MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSE 254 (555)
T ss_pred hhhhcCCcccccCC--CCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCc
Confidence 66645777777543 46999999999999999999999999999999999999932 3889999999999999999
Q ss_pred EEEEEE----ccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHH
Q 019500 238 GIILIG----EIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLR 312 (340)
Q Consensus 238 ~I~ly~----E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~ 312 (340)
+|++|+ |+ ++ ++|+++++ .+||||++|+||++. |. +
T Consensus 255 vIvly~kppaE~----v~--~~fl~aar~~~KPVVvlk~Grs~~-------------------------g~--------~ 295 (555)
T PRK06091 255 VIAFVSKPPAEA----VR--LKIINAMKATGKPVVALFLGYTPA-------------------------VA--------R 295 (555)
T ss_pred EEEEEEecCchH----HH--HHHHHHHhhCCCCEEEEEecCCch-------------------------hh--------h
Confidence 999999 65 45 49999887 799999999999887 22 8
Q ss_pred HcCCeecCCHHHHHHHHHHHH
Q 019500 313 EAGVTVVESPAKIGAAMLEVF 333 (340)
Q Consensus 313 qaGvv~v~~~~el~~~~~~~~ 333 (340)
|+|+++++|++|+++.+..+.
T Consensus 296 q~GVi~a~tleEl~~~A~~la 316 (555)
T PRK06091 296 DENVWFASTLDEAARLACLLS 316 (555)
T ss_pred cCCeEEeCCHHHHHHHHHHHh
Confidence 999999999999999998654
No 11
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=100.00 E-value=5.6e-41 Score=287.62 Aligned_cols=132 Identities=29% Similarity=0.439 Sum_probs=95.5
Q ss_pred CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHH
Q 019500 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259 (340)
Q Consensus 180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a 259 (340)
||+||+|||||+++.+++++++++|+|||++||+||++ |+++.|+|+||.+||+|++|++|+|+ ++|+++|+++
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~--dv~~~d~l~~~~~D~~t~~I~ly~E~----~~d~~~f~~~ 74 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEA--DVDFADLLEYLAEDPDTRVIVLYLEG----IGDGRRFLEA 74 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-S--SS-HHHHHHHHCT-SS--EEEEEES------S-HHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccc--cCCHHHHHHHHhcCCCCCEEEEEccC----CCCHHHHHHH
Confidence 69999999999999999999999999999999999998 99999999999999999999999998 6678999987
Q ss_pred hC---CCCCEEEEEeCCCCCCCCc--ccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHHHHHHHHHH
Q 019500 260 SG---TEKPIVAFIAGLTAPPGRR--MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLE 331 (340)
Q Consensus 260 ~r---~~KPVvvlk~Grs~~~g~~--~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~el~~~~~~ 331 (340)
++ +.||||+||+|||+. |++ .|||| +++ |++++|+++|+|+|+++++|++||++++++
T Consensus 75 ~~~a~~~KPVv~lk~Grt~~-g~~aa~sHTg---------sla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 75 ARRAARRKPVVVLKAGRTEA-GARAAASHTG---------SLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp HHHHCCCS-EEEEE-----------------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred HHHHhcCCCEEEEeCCCchh-hhhhhhccCC---------ccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 75 569999999999999 776 69999 998 999999999999999999999999999864
No 12
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=99.90 E-value=8.7e-24 Score=176.24 Aligned_cols=111 Identities=25% Similarity=0.410 Sum_probs=83.5
Q ss_pred EEEeCCCC---CcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500 45 VICQGITG---KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 45 ViVvGasg---k~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~ 121 (340)
|+|+|+|. ++|+.+.++|++.||+++ +|||++ ++++|+++|+|++|+|+ ++|++++++|++.+++++++|.+
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~--~iDlavv~~~~~~~~~~v~~~~~ 77 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPE--PIDLAVVCVPPDKVPEIVDEAAA 77 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSS--T-SEEEE-S-HHHHHHHHHHHHH
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCC--CCCEEEEEcCHHHHHHHHHHHHH
Confidence 34559985 567888999999999865 999999 89999999999999766 69999999999999999999999
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 122 AELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 122 ~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
+|++.+| +.+| +..+++.+.+ +++|++++||||+|+++|
T Consensus 78 ~g~~~v~-~~~g---~~~~~~~~~a-~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 78 LGVKAVW-LQPG---AESEELIEAA-REAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp HT-SEEE-E-TT---S--HHHHHHH-HHTT-EEEESS-HHHHHT
T ss_pred cCCCEEE-EEcc---hHHHHHHHHH-HHcCCEEEeCCcceEEcC
Confidence 9999976 5555 2334455555 789999999999999886
No 13
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=99.78 E-value=2.7e-19 Score=151.05 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=102.3
Q ss_pred cccccC-cCCeEEEEeCCCCC---cchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 34 APAVFV-DKNTRVICQGITGK---NGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 34 l~~lf~-p~~iaViVvGasgk---~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
+..+|. -+.|+| +|+|.+ .++.+.+.|.+.||+++ ||||+..|++++|.++|+||+|+|+ ++|++.+|.++
T Consensus 9 i~~iL~~~K~IAv--VG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe--~IDiVdvFR~~ 83 (140)
T COG1832 9 IAEILKSAKTIAV--VGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPE--PIDIVDVFRRS 83 (140)
T ss_pred HHHHHHhCceEEE--EecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCC--CCcEEEEecCh
Confidence 666664 455554 599975 46788999999999988 9999887789999999999999997 69999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
+.++++++++++.|+|.+ |++.|...++..+.. +++|+.++-..|+.+--+
T Consensus 84 e~~~~i~~eal~~~~kv~-W~QlGi~n~ea~~~~----~~aG~~vV~nrCi~~E~~ 134 (140)
T COG1832 84 EAAPEVAREALEKGAKVV-WLQLGIRNEEAAEKA----RDAGLDVVMDRCIMIEHP 134 (140)
T ss_pred hhhHHHHHHHHhhCCCeE-EEecCcCCHHHHHHH----HHhCcHHHHHhhHHHHHh
Confidence 999999999999999885 599998665544332 678999999999987544
No 14
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=99.53 E-value=1e-13 Score=111.64 Aligned_cols=93 Identities=30% Similarity=0.327 Sum_probs=77.7
Q ss_pred cCCeEEEEeCCCCCcchHHHHH-HHHcCCe--EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQ-AIEYGTK--MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~-l~~~G~~--vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
++..+|+|+|+ |+.|+..+.. ....||+ .++.+||+..|+++.|+|+|++++++.+..++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 36788999999 8888876643 3344665 555799998889999999999999999854599999999999999999
Q ss_pred HHHHHcCCcEEEEecCC
Q 019500 117 LEAMEAELDLVVCITEG 133 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~G 133 (340)
+++++.|+|.+|+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
No 15
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=99.47 E-value=4.1e-13 Score=133.05 Aligned_cols=237 Identities=29% Similarity=0.486 Sum_probs=187.4
Q ss_pred cccccCHHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 85 LPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 85 ~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
+|+|+++.+...+ ...|+.+=+.....+.+--.++.+.| ++.+-++.+|.+|.+..++...+ ++.+.-++||-+.|.
T Consensus 55 IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~~~a-~~k~~~iiGPaTvgg 133 (600)
T KOG1254|consen 55 IPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLRAGA-EVKGVGIIGPATVGG 133 (600)
T ss_pred eechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHHhcc-ccccceEEeeeeecc
Confidence 6889876665543 24677777777777777777888876 88888899999998877766544 778889999999999
Q ss_pred ccCC--Cc-ccc-----cCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCC
Q 019500 163 IKPG--EC-KIG-----IMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADP 234 (340)
Q Consensus 163 ~~p~--~~-~~~-----~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp 234 (340)
+-|. +. |.+ .......+||.+++||.||++..++.+.-.+.=.|...-+.+|++.+.+.++.|-+--+.+||
T Consensus 134 VePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~ 213 (600)
T KOG1254|consen 134 VEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDP 213 (600)
T ss_pred ccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccC
Confidence 9887 22 111 122345899999999999999999988777777899999999999999999999999999999
Q ss_pred CccEEEEEEccCCCcHHHHHHHHHHh---CCCCCEEEEEeCCCCC---CCCcccccCcccccccccceecCCCCcHHHHH
Q 019500 235 QTEGIILIGEIGGTAEEDAAALIKES---GTEKPIVAFIAGLTAP---PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKI 308 (340)
Q Consensus 235 ~T~~I~ly~E~~g~~~~~~~~f~~a~---r~~KPVvvlk~Grs~~---~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~ 308 (340)
.++-|++..|.+|+-+ =.|+++. +..||+|++-.|..+. ...++.|.| +-+-.....+.++.
T Consensus 214 ~vk~Iv~Lgevgg~~e---y~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghag---------taa~~~~eka~akn 281 (600)
T KOG1254|consen 214 LVKFIVVLGEVGGDEE---YTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAG---------TAAFKNGEKAAAKN 281 (600)
T ss_pred hhheEEeehhhcccce---eehhhhhhcCCccCCEEEEecCccccccchhhhccccc---------hhhhcchhhhhhcc
Confidence 9999999999877533 3566665 3899999999997553 134579988 65422324566788
Q ss_pred HHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500 309 KTLREAGVTVVESPAKIGAAMLEVFK 334 (340)
Q Consensus 309 a~~~qaGvv~v~~~~el~~~~~~~~~ 334 (340)
++++.+|+.+-+++++|.+..+..++
T Consensus 282 ~al~~ag~~vpesf~~l~~~i~~~~e 307 (600)
T KOG1254|consen 282 QALRDAGATVPESFDALGADIQETYE 307 (600)
T ss_pred hhhhhccccCccchhhhhhhhccchh
Confidence 99999999999999999988877665
No 16
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.42 E-value=1.2e-12 Score=110.24 Aligned_cols=110 Identities=26% Similarity=0.379 Sum_probs=86.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCC---CCce--------ecCcccccCHHHhhccCCCcEEEEecChh
Q 019500 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKK---GGTE--------HLGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~---~g~~--------i~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
++|+|+|++||||+.+.+.+.+ .++++++.++++. .|+. -.|+++|.+++++.+. +|++|+|+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence 5789999999999999999988 5899998887765 2232 3578999999999984 99999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN 158 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN 158 (340)
.+.+.++.|.++|++. |+.|+||++++.+++.+++ ++ +. ++.||
T Consensus 79 ~~~~~~~~~~~~g~~~-ViGTTG~~~~~~~~l~~~a-~~--~~vl~a~N 123 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPL-VIGTTGFSDEQIDELEELA-KK--IPVLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHHT-EE-EEE-SSSHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred HhHHHHHHHHhCCCCE-EEECCCCCHHHHHHHHHHh-cc--CCEEEeCC
Confidence 9999999999999987 5699999999888888765 33 44 66777
No 17
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.28 E-value=3.8e-11 Score=113.72 Aligned_cols=118 Identities=21% Similarity=0.315 Sum_probs=95.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeC-CCC--CCc---ee-----cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVT-PKK--GGT---EH-----LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~Vn-P~~--~g~---~i-----~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
++|+|+|++|+||+.+++.+.+ .++++++.++ +.. .+. ++ .|+++|.+++++.. .+|++|+|+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence 6889999889999999999887 4899998888 321 111 11 46889999999932 599999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC-CCccc
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK 164 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc-~Gi~~ 164 (340)
.+.+.++.|+++|++. ++.|+|+++++.+++.+++ +++|+. +++||. +|+..
T Consensus 80 ~~~~~~~~al~~g~~v-Vigttg~~~e~~~~l~~aA-~~~g~~v~~a~NfSlGv~l 133 (266)
T TIGR00036 80 GVLNHLKFALEHGVRL-VVGTTGFSEEDKQELADLA-EKAGIAAVIAPNFSIGVNL 133 (266)
T ss_pred HHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHH-hcCCccEEEECcccHHHHH
Confidence 9999999999999887 5588999998888888876 777776 667886 66543
No 18
>PLN02775 Probable dihydrodipicolinate reductase
Probab=99.21 E-value=1.1e-10 Score=111.21 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=95.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce----ec--Ccccc--cCHHHhhccC---CCc-EEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE----HL--GLPVF--NTVAEAKAET---KAN-ASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~----i~--G~p~y--~sl~dip~~~---~vD-lavi~vp~ 109 (340)
.++|+|.|++||||+.+++.+.+.+++++..++++..|++ +. ++++| .+++++.+.. .+| ++|+|+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 4789999999999999999988889999988998775543 32 68899 8999988543 589 89999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCC-CCccc
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNC-PGVIK 164 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc-~Gi~~ 164 (340)
+.+.++++.|+++|++. |+.|+||++++.+++. ++.++. ++.||. +|+..
T Consensus 91 ~a~~~~~~~~~~~g~~~-VvGTTG~~~e~l~~~~----~~~~i~vv~apNfSiGv~l 142 (286)
T PLN02775 91 DAVNDNAELYCKNGLPF-VMGTTGGDRDRLLKDV----EESGVYAVIAPQMGKQVVA 142 (286)
T ss_pred HHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHH----hcCCccEEEECcccHHHHH
Confidence 99999999999999998 5699999988665443 334554 778886 67653
No 19
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.21 E-value=1.1e-10 Score=109.33 Aligned_cols=117 Identities=22% Similarity=0.313 Sum_probs=94.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC-----------CceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG-----------GTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~-----------g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
+++|+|+|++||||+.+.+.+.+. ++++++.++.... |....|+|+.+++..... ++|++|+|+.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~--~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKA--DADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhccc--CCCEEEECCCc
Confidence 578999999999999999998876 6888877765431 124568999998666554 69999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI 163 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~ 163 (340)
+.+.+.++.|.++|++. ||.|+||++++.+++.+++ ++-+ -|+.||. +|+.
T Consensus 80 ~~~~~~l~~~~~~~~~l-VIGTTGf~~e~~~~l~~~a-~~v~-vv~a~NfSiGvn 131 (266)
T COG0289 80 EATLENLEFALEHGKPL-VIGTTGFTEEQLEKLREAA-EKVP-VVIAPNFSLGVN 131 (266)
T ss_pred hhhHHHHHHHHHcCCCe-EEECCCCCHHHHHHHHHHH-hhCC-EEEeccchHHHH
Confidence 99999999999999887 6699999999999888876 4432 3667885 6654
No 20
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=99.21 E-value=2.2e-11 Score=108.36 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=88.8
Q ss_pred CCCCCCCCccccc-----CcCCeEEEEeCCCCCcchHHHH--HHHHcCCeEEEe--eCCCCCCceecCccccc--CHHHh
Q 019500 26 SFTTAPPPAPAVF-----VDKNTRVICQGITGKNGTFHTE--QAIEYGTKMVGG--VTPKKGGTEHLGLPVFN--TVAEA 94 (340)
Q Consensus 26 ~~~~~~~~l~~lf-----~p~~iaViVvGasgk~G~~v~~--~l~~~G~~vv~~--VnP~~~g~~i~G~p~y~--sl~di 94 (340)
+|+.+. |..+| ..+.++|+++|+ |++|++++. ...+.+++++.. +||+.-|.++.++|+|. +|++.
T Consensus 65 GYnV~~--L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~ 141 (211)
T COG2344 65 GYNVKY--LRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKF 141 (211)
T ss_pred CccHHH--HHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHH
Confidence 455554 77766 457899999999 999999775 466789987754 78888789999999997 57777
Q ss_pred hccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 95 p~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
..+.++|+++++||++.++++.+.++++|||++|.||+.
T Consensus 142 v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 142 VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 766689999999999999999999999999999999985
No 21
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.08 E-value=1.2e-09 Score=103.05 Aligned_cols=116 Identities=20% Similarity=0.256 Sum_probs=91.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
++|+|+|++|+||+.+++.+.+. ++++++.+++..... ...|++.|.+++++.+ ++|++++|+||+.+.+.++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPEATLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHHHHHHHHHH
Confidence 57889999999999999988874 788887777654111 2346788999999886 59999999999999999999
Q ss_pred HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC-CCcc
Q 019500 119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC-PGVI 163 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc-~Gi~ 163 (340)
|+++|++.+ +.|+|+++++..++.+++ ++.+ .++.||+ +|+.
T Consensus 80 al~~G~~vv-igttG~s~~~~~~l~~aa-~~~~-v~~s~n~s~g~~ 122 (257)
T PRK00048 80 ALEHGKPLV-IGTTGFTEEQLAELEEAA-KKIP-VVIAPNFSIGVN 122 (257)
T ss_pred HHHcCCCEE-EECCCCCHHHHHHHHHHh-cCCC-EEEECcchHHHH
Confidence 999999985 579999999988888743 4444 3555665 5544
No 22
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=99.05 E-value=1.3e-09 Score=103.36 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=94.0
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEe-eCCCCCCce---ec--Cccc------ccCHHHhhccCCCc-EEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE---HL--GLPV------FNTVAEAKAETKAN-ASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~-VnP~~~g~~---i~--G~p~------y~sl~dip~~~~vD-lavi~vp~ 109 (340)
++|+|.|++||||+.+++.+.+.+++++.. ++++..+++ +. ++|+ |.+++++.+. .+| ++|+|+.|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P 79 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP 79 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh
Confidence 478899999999999999988889998866 887764332 22 6888 8899999863 488 99999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCc-EEEccCC-CCccc
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT-RLVGPNC-PGVIK 164 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gi-rviGPNc-~Gi~~ 164 (340)
+.+.+.++.|.++|++. |+.|+|+++++.+++.+. .++ .++.||. +|+..
T Consensus 80 ~~~~~n~~~~~~~gv~~-ViGTTG~~~~~~~~l~~~----~~i~~l~apNfSiGv~l 131 (275)
T TIGR02130 80 SAVNDNAAFYGKHGIPF-VMGTTGGDREALAKLVAD----AKHPAVIAPNMAKQIVA 131 (275)
T ss_pred HHHHHHHHHHHHCCCCE-EEcCCCCCHHHHHHHHHh----cCCCEEEECcccHHHHH
Confidence 99999999999999998 569999999988777543 234 4778886 67653
No 23
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.96 E-value=3.8e-09 Score=86.88 Aligned_cols=109 Identities=22% Similarity=0.293 Sum_probs=85.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
++|.|+|+ |.+|+.+.+.+.+. ++++++.++|+... + +-.|+++|.|++++.+..++|+++|++|+..+.+.+
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 47888899 88999998887775 56788888887521 1 247999999999999866799999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE
Q 019500 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR 153 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir 153 (340)
++|+++|++.++=-.-..+.++.+++.+.+ +++|..
T Consensus 80 ~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a-~~~~~~ 115 (120)
T PF01408_consen 80 KKALEAGKHVLVEKPLALTLEEAEELVEAA-KEKGVK 115 (120)
T ss_dssp HHHHHTTSEEEEESSSSSSHHHHHHHHHHH-HHHTSC
T ss_pred HHHHHcCCEEEEEcCCcCCHHHHHHHHHHH-HHhCCE
Confidence 999999996533222245667788888876 566654
No 24
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=98.93 E-value=7.3e-09 Score=90.45 Aligned_cols=121 Identities=36% Similarity=0.486 Sum_probs=96.6
Q ss_pred EecChHHHHHHHHHHHhC--------------CCCceEEeecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q 019500 186 VSRSGTLTYEAVFQTTAV--------------GLGQSTCVGIGGDPFN---------GTNFVDCVTKFIADPQTEGIILI 242 (340)
Q Consensus 186 vSQSG~l~~~~~~~~~~~--------------giG~S~~vs~Gn~a~~---------dv~~~d~l~~l~~Dp~T~~I~ly 242 (340)
++.||+|+++.++...+. +.+.+.++-+|.+.++ .....|.|+.+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999865 67899999999999999999999
Q ss_pred EccC-CCcHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC
Q 019500 243 GEIG-GTAEEDAAALIKESG------TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG 315 (340)
Q Consensus 243 ~E~~-g~~~~~~~~f~~a~r------~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG 315 (340)
+|.+ |..+.-+..++++.+ +.||||+.-.|+.+.++.++.|.+ +|+++|
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~------------------------~L~~~G 136 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAG------------------------ALEDAG 136 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHH------------------------HHHCTT
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHH------------------------HHHhCC
Confidence 9987 777677778888765 478999999998887444444433 455666
Q ss_pred CeecCCHHHHHHHHH
Q 019500 316 VTVVESPAKIGAAML 330 (340)
Q Consensus 316 vv~v~~~~el~~~~~ 330 (340)
+..+.+-++-..++.
T Consensus 137 ~~v~~s~~~A~~~A~ 151 (153)
T PF00549_consen 137 VIVAESNAQAARAAG 151 (153)
T ss_dssp CSCHHHHHHHHHHHT
T ss_pred CcccccHHHHHHHcC
Confidence 666666655554443
No 25
>PRK11579 putative oxidoreductase; Provisional
Probab=98.59 E-value=4.7e-07 Score=88.50 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=83.7
Q ss_pred CeEEEEeCCCCCcch-HHHHHHHHc-CCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500 42 NTRVICQGITGKNGT-FHTEQAIEY-GTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (340)
Q Consensus 42 ~iaViVvGasgk~G~-~v~~~l~~~-G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 117 (340)
.++|.|+|+ |.+|+ .+...+.+. ++++++.++++.. .....+.++|.+++++.+..++|+++|++|+..+.+.+.
T Consensus 4 ~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 578999999 88887 466766664 7888878877641 112346789999999987557999999999999999999
Q ss_pred HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154 (340)
Q Consensus 118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv 154 (340)
+|+++|.+.++=-.-..+.++.+++.+++ +++|+.+
T Consensus 83 ~al~aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l 118 (346)
T PRK11579 83 AALEAGKHVVVDKPFTVTLSQARELDALA-KSAGRVL 118 (346)
T ss_pred HHHHCCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEE
Confidence 99999987643222245566777887776 6777664
No 26
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.50 E-value=6.5e-07 Score=84.81 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=84.7
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---e-e-cCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E-H-LGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---~-i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
++|.|+|+ |++|+.+++.+.+. +.++++.+++....+ + . .+.++|.+++++ . .++|++++|+|+..+.+.+
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence 57889999 99999999998876 667665554432101 1 1 267899999999 4 3699999999999999999
Q ss_pred HHHHHcCCcEEEEecCC-CChhh-HHHHHHHHhccCCcE-EEccCCCCcc
Q 019500 117 LEAMEAELDLVVCITEG-IPQHD-MVRVKAALNNQSKTR-LVGPNCPGVI 163 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~G-f~e~~-~~~l~~~aar~~gir-viGPNc~Gi~ 163 (340)
.+|+++|++.+ +.++| +++.+ ..+|.+.+ +++|.+ .+-|.+.|.+
T Consensus 79 ~~aL~aGk~Vv-i~s~~Al~d~~~~~~L~~~A-~~~g~~l~v~sga~gg~ 126 (265)
T PRK13303 79 VPILKAGIDCA-VISVGALADEALRERLEQAA-EAGGARLHLLSGAIGGI 126 (265)
T ss_pred HHHHHcCCCEE-EeChHHhcCHHHHHHHHHHH-HHCCCEEEEeChHhhCH
Confidence 99999998874 46766 55444 45666665 677766 4445555544
No 27
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.48 E-value=8.5e-07 Score=83.98 Aligned_cols=108 Identities=7% Similarity=0.106 Sum_probs=82.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
++|.|+|+ |++|+.+++.+.+. ++++++.+|++... + +..|.+.|.+++++.. ++|++++|+|++.+.+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 47888898 99999999988875 57778778876410 1 2346788999999974 699999999999999999
Q ss_pred HHHHHcCCcEEEEecCCC--ChhhHHHHHHHHhccCCcEEE
Q 019500 117 LEAMEAELDLVVCITEGI--PQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf--~e~~~~~l~~~aar~~girvi 155 (340)
++++++|.+. ++.+.|. .++..+++.+++ +++|.++.
T Consensus 79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA-~~~g~~l~ 117 (265)
T PRK13304 79 PKSLENGKDV-IIMSVGALADKELFLKLYKLA-KENNCKIY 117 (265)
T ss_pred HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHH-HHcCCEEE
Confidence 9999999876 4466653 334456677765 77887764
No 28
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.47 E-value=9e-07 Score=85.32 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=85.2
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCCCC-c---eecCcc-cccCHHHhhccCCCcEEEEecChhhHH
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGG-T---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~~g-~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
+.++|.|+|+.+-.+..+...+.+.+ +.+++.++++... + +-.|++ +|.|++++.+..++|+++|++|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 46788999994344566888888764 5788887776521 1 246775 999999999876699999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccC
Q 019500 114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPN 158 (340)
Q Consensus 114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPN 158 (340)
+.+.+|+++|.+.++=-.-..+.+|.++|.+++ +++|+. .+|-|
T Consensus 82 e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a-~~~~~~l~v~~~ 126 (342)
T COG0673 82 ELALAALEAGKHVLCEKPLALTLEEAEELVELA-RKAGVKLMVGFN 126 (342)
T ss_pred HHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH-HHcCCceeeehh
Confidence 999999999997633111134556777788776 566654 55555
No 29
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.38 E-value=1.2e-06 Score=80.24 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=82.0
Q ss_pred ccccCCCCCCCCCC--CCccccc-CcCCeEEEEeCCCCCcchHHHHHH--HHcCCeEEEeeCC--CCCCceecCccccc-
Q 019500 18 EICCGQSRSFTTAP--PPAPAVF-VDKNTRVICQGITGKNGTFHTEQA--IEYGTKMVGGVTP--KKGGTEHLGLPVFN- 89 (340)
Q Consensus 18 ~~~~~~~~~~~~~~--~~l~~lf-~p~~iaViVvGasgk~G~~v~~~l--~~~G~~vv~~VnP--~~~g~~i~G~p~y~- 89 (340)
|.---+...|+... ..++.+| ..+..+|+|+|+ |.+|..+.+.+ .+.|+++++.+++ ...+..+.|+|++.
T Consensus 57 ~~~G~~~~gy~v~~l~~~~~~~l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~ 135 (213)
T PRK05472 57 GEFGKRGVGYNVEELLEFIEKILGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHI 135 (213)
T ss_pred HhcCCCCCCeeHHHHHHHHHHHhCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCH
Confidence 43334455566543 1144555 234578999999 99998888753 2468998876654 44445677888764
Q ss_pred -CHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 90 -sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
++.++..++++|.+++++|.....++.+.+.++|++.+|.+++
T Consensus 136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 5666655457999999999999999999999999999998875
No 30
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.34 E-value=2.9e-06 Score=80.70 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=82.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHH--cCCeEEEeeCCCCCC-c---eecC-cccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIE--YGTKMVGGVTPKKGG-T---EHLG-LPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~--~G~~vv~~VnP~~~g-~---~i~G-~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
.++|.|+|+ |++|+.+++++.+ .++++++..++.... + +-.| .+.|.+++++.. ++|++++++|.+.+.+
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPASVLRA 82 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCcHHHHH
Confidence 467888899 9999999999987 378877666765410 1 1234 467899999976 5999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccCC
Q 019500 115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNC 159 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPNc 159 (340)
..++++++|.+.+ +.+.|- -.+.+++.+.+ +++|.++ ++|..
T Consensus 83 ~~~~aL~aGk~Vi-~~s~ga-l~~~~~L~~~A-~~~g~~l~v~sGa 125 (271)
T PRK13302 83 IVEPVLAAGKKAI-VLSVGA-LLRNEDLIDLA-RQNGGQIIVPTGA 125 (271)
T ss_pred HHHHHHHcCCcEE-Eecchh-HHhHHHHHHHH-HHcCCEEEEcchH
Confidence 9999999998764 455442 12445666665 6788775 55443
No 31
>PRK10206 putative oxidoreductase; Provisional
Probab=98.33 E-value=3.1e-06 Score=83.00 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=79.8
Q ss_pred CeEEEEeCCCCCcc-hHHHHHHHH--cCCeEEEeeCCCCCC----ceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNG-TFHTEQAIE--YGTKMVGGVTPKKGG----TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G-~~v~~~l~~--~G~~vv~~VnP~~~g----~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
+++|.|+|+ |.++ +.+...+.+ .++++++.++++... ++..+.+.|.+++++.+..++|+++|++|+..+.+
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~ 79 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 79 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHH
Confidence 467888999 7654 446665543 367888777764310 12335789999999997657999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE
Q 019500 115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv 154 (340)
.+.+|+++|.+.++=-.-..+.++.+++.+++ +++|+.+
T Consensus 80 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l 118 (344)
T PRK10206 80 YAKRALEAGKNVLVEKPFTPTLAEAKELFALA-KSKGLTV 118 (344)
T ss_pred HHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEE
Confidence 99999999977533111234556777787776 6777664
No 32
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.22 E-value=6.3e-06 Score=81.00 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=81.3
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEec----Chh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYV----PPP 110 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~v----p~~ 110 (340)
+.++|+|+|+ .+|+.+++.+.+. ++++++.++++... + +-+|+|.|.+++|+++ ++|+++|++ |+.
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~--d~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhc--CCCEEEEEeCCCCCCc
Confidence 4578889998 5799999888774 58898888876421 1 2468999999999996 477777776 457
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
.+.+++.+|+++|++.++ ---+..++.+++.+++ +++|+.+.
T Consensus 78 ~H~e~a~~aL~aGkHVL~--EKPla~~Ea~el~~~A-~~~g~~l~ 119 (343)
T TIGR01761 78 QGSALARALLARGIHVLQ--EHPLHPRDIQDLLRLA-ERQGRRYL 119 (343)
T ss_pred cHHHHHHHHHhCCCeEEE--cCCCCHHHHHHHHHHH-HHcCCEEE
Confidence 889999999999987632 2235556777888776 67787755
No 33
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.12 E-value=0.00027 Score=71.88 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=146.3
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC----hhhHHHHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP----PPFAAAAILEAM 120 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp----~~~v~~~v~ea~ 120 (340)
|.++.=||.++..+...+.+.|+..-+.|+-.. +-. +..-+-++-+.+..+.++++++.- +....++++.+.
T Consensus 153 valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~d--~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~ 228 (447)
T TIGR02717 153 IAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KAD--IDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREIS 228 (447)
T ss_pred EEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hhh--CCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHc
Confidence 444487887777777777776554333454432 111 111111222223235788888865 345556666664
Q ss_pred HcCCcEEEEecCCCChhhH-------------HHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEEEe
Q 019500 121 EAELDLVVCITEGIPQHDM-------------VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVS 187 (340)
Q Consensus 121 ~~Gvk~vvi~t~Gf~e~~~-------------~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvS 187 (340)
+ +.+ +|++-+|-++.+. .+..+.+.++.|+..+ .+.--+++.. ..+.....++-.+||+||
T Consensus 229 ~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~---~~l~~~~~~~g~rvaivs 302 (447)
T TIGR02717 229 K-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLA---RLLSNQPLPKGNRVAIIT 302 (447)
T ss_pred C-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHH---HHHhcCCCCCCCeEEEEE
Confidence 4 544 5667777655432 1233333377776655 2211222211 111111224556799999
Q ss_pred cChHHHHHHHHHHHhCCCCceE---------------EeecCCCCC-----CCCCHHHHHHHhhcCCCccEEEEEEccC-
Q 019500 188 RSGTLTYEAVFQTTAVGLGQST---------------CVGIGGDPF-----NGTNFVDCVTKFIADPQTEGIILIGEIG- 246 (340)
Q Consensus 188 QSG~l~~~~~~~~~~~giG~S~---------------~vs~Gn~a~-----~dv~~~d~l~~l~~Dp~T~~I~ly~E~~- 246 (340)
-||+.+..+.|.+.+.|+-+-. ..+.+|-.+ ..-.+.+.|+.+.+||++.+|++.+-..
T Consensus 303 ~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~ 382 (447)
T TIGR02717 303 NAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTA 382 (447)
T ss_pred CCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCc
Confidence 9999999999999999987652 345666431 1224678999999999999998654311
Q ss_pred -CCcHHHHHHHHHHhC-C-CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCCeecCCHH
Q 019500 247 -GTAEEDAAALIKESG-T-EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPA 323 (340)
Q Consensus 247 -g~~~~~~~~f~~a~r-~-~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGvv~v~~~~ 323 (340)
.....-.+.+.++.+ . +|||++.-.|. ...+.....|+++|+...++++
T Consensus 383 ~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg----------------------------~~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 383 MTDPEEVAKGIIEGAKKSNEKPVVAGFMGG----------------------------KSVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEecCC----------------------------ccHHHHHHHHHhCCCCccCCHH
Confidence 111223344444444 3 89997764331 1223446668899999999999
Q ss_pred HHHHHHHHHH
Q 019500 324 KIGAAMLEVF 333 (340)
Q Consensus 324 el~~~~~~~~ 333 (340)
+-..++..++
T Consensus 435 ~A~~al~~~~ 444 (447)
T TIGR02717 435 RAVKALSALY 444 (447)
T ss_pred HHHHHHHHHH
Confidence 9887776544
No 34
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.09 E-value=1.5e-05 Score=77.70 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=80.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCccccc--CHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFN--TVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~--sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
+++|+|+|. |++|+.+.+.+.+. ++++++.++++..+.--.+.++|. +..++.. ++|++++|+|+....+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 589999999 99999999988775 789887777663111112234444 5555543 69999999999999999999
Q ss_pred HHHcCCcEEEEecCCCCh-hhHHHHHHHHhcc-CCcEEEccC-CCCcc
Q 019500 119 AMEAELDLVVCITEGIPQ-HDMVRVKAALNNQ-SKTRLVGPN-CPGVI 163 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~e-~~~~~l~~~aar~-~girviGPN-c~Gi~ 163 (340)
++++|++.+.-+-..... +..+++.+++ ++ .++.+++-. =.|++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~~GwDPG~~ 126 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVISTGWDPGMF 126 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEECCCCcChH
Confidence 999999985433222221 2244555554 54 688898822 24544
No 35
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.87 E-value=6.2e-05 Score=83.18 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHc-CCe------------EEEeeCCCCCC-ce----ecC---ccc-ccCHHHhhcc-
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEY-GTK------------MVGGVTPKKGG-TE----HLG---LPV-FNTVAEAKAE- 97 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~------------vv~~VnP~~~g-~~----i~G---~p~-y~sl~dip~~- 97 (340)
++-+|+|+|+ |++|+.+++.|.+. +++ ++...++.... ++ ..+ +++ |.+.+++.+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 3556778899 99999999999875 333 35556654310 11 113 445 6677777641
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500 98 TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (340)
Q Consensus 98 ~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~ 166 (340)
.++|+||+++|+..+.++++.|+++|++.+ +..+..+++.++.+.+ +++|+.++ |.| | ++|+
T Consensus 647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv---~eky~~~e~~~L~e~A-k~AGV~~m-~e~-G-lDPG 708 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKACIELKKHLV---TASYVSEEMSALDSKA-KEAGITIL-CEM-G-LDPG 708 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCCEE---ECcCCHHHHHHHHHHH-HHcCCEEE-ECC-c-cCHH
Confidence 259999999999999999999999999873 3336666677777776 77888876 333 3 5554
No 36
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.85 E-value=4.3e-05 Score=66.90 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILE 118 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e 118 (340)
.+|.++|. |+||+.++++|.+.||++. ..|+.... ++ -.|.....|++|+.+ ..|++++++|. +.+.+++..
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE-SSSHHHHHHHHHC
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEeecccchhhhhhhhh
Confidence 45777799 9999999999999999954 44544210 11 257889999999987 48999999998 555666666
Q ss_pred --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
.... .-..++|-++-.+.+..+++.+.+ ++.|++++
T Consensus 78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~-~~~g~~~v 116 (163)
T PF03446_consen 78 ENILAGLRPGKIIIDMSTISPETSRELAERL-AAKGVRYV 116 (163)
T ss_dssp TTHGGGS-TTEEEEE-SS--HHHHHHHHHHH-HHTTEEEE
T ss_pred hHHhhccccceEEEecCCcchhhhhhhhhhh-hhccceee
Confidence 4443 345556556666666667777666 56777766
No 37
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.69 E-value=0.00023 Score=69.63 Aligned_cols=119 Identities=24% Similarity=0.265 Sum_probs=76.8
Q ss_pred ccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 37 lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
.+..++ |.|+|. |++|+.++++|++.|++++....+..... +-.|+.+. +++++.+ ..|++++++|+....
T Consensus 14 ~L~gkt--IgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~--~ADVVvLaVPd~~~~ 87 (330)
T PRK05479 14 LIKGKK--VAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAK--WADVIMILLPDEVQA 87 (330)
T ss_pred hhCCCE--EEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHh--cCCEEEEcCCHHHHH
Confidence 344555 455599 99999999999999998664333322101 12466655 7888876 589999999999888
Q ss_pred HHH-HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 114 AAI-LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 114 ~~v-~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
+++ ++.... .-..+++++.||+-.... ........+-.+-||+.|-..
T Consensus 88 ~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~v 137 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLV 137 (330)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhh
Confidence 887 444433 223466899999754322 111123345555699887643
No 38
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.67 E-value=0.00022 Score=70.10 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=67.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec---C-cc-----cccCHHHhhccCCCcEEEEecChhh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL---G-LP-----VFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~---G-~p-----~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
+++|+|+|++|.+|+.+++.+.+. ++++++.++++..++.+. + ++ .|.++++... .++|++++|+|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHH
Confidence 367888899999999999999886 678777777543333221 1 22 3545544322 25999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCh
Q 019500 112 AAAAILEAMEAELDLVVCITEGIPQ 136 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vvi~t~Gf~e 136 (340)
+.+.+.++.++|++. |-.++.|.-
T Consensus 81 ~~~~v~~a~~aG~~V-ID~S~~fR~ 104 (343)
T PRK00436 81 SMDLAPQLLEAGVKV-IDLSADFRL 104 (343)
T ss_pred HHHHHHHHHhCCCEE-EECCcccCC
Confidence 999999999999765 677877753
No 39
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.65 E-value=0.00047 Score=63.74 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=74.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCC-CC-Cce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPK-KG-GTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~-~~-g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
.++|.|+|+ |++|+.+++.+.+.+. +.++.++++ .. .+. -.|++.+.+.+++.+ +.|++++++|+..+.
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DiViiavp~~~~~ 80 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVT--SVDTIVLAMPPSAHE 80 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHh--cCCEEEEecCHHHHH
Confidence 457788898 9999999998887653 324455542 10 011 246777888888775 589999999999999
Q ss_pred HHHHHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 114 AAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 114 ~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+++++.... .-+.+|-++.|++.+. |++.......+-..+||
T Consensus 81 ~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~~~~~v~r~~Pn 123 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAGIGPSY---LEERLPKGTPVAWIMPN 123 (245)
T ss_pred HHHHHHHhhccCCEEEEECCCCCHHH---HHHHcCCCCeEEEECCc
Confidence 999887642 2256677778987554 33332112234457887
No 40
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.65 E-value=0.00022 Score=66.33 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC-CCh-hhH
Q 019500 66 GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG-IPQ-HDM 139 (340)
Q Consensus 66 G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G-f~e-~~~ 139 (340)
++++++..||+... + +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|.+.++ .+.| +.+ ++.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl~-~s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLLI-MSVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEEE-ECCcccCCHHHH
Confidence 35667777776411 1 23578899999999753 699999999999999999999999998755 6766 433 556
Q ss_pred HHHHHHHhccCCcE-EEccCCCCcc
Q 019500 140 VRVKAALNNQSKTR-LVGPNCPGVI 163 (340)
Q Consensus 140 ~~l~~~aar~~gir-viGPNc~Gi~ 163 (340)
+++.+.+ +++|.+ .++++.+|..
T Consensus 79 ~~l~~aA-~~~g~~l~i~sGai~g~ 102 (229)
T TIGR03855 79 ERLREVA-RSSGRKVYIPSGAIGGL 102 (229)
T ss_pred HHHHHHH-HhcCCEEEEChHHHHHH
Confidence 7777776 667766 5566555443
No 41
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.60 E-value=0.00032 Score=68.20 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=72.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChh-hHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAILEA 119 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v~ea 119 (340)
+|.|+|+ |+||+.++++|.+.|++++...++.... +. -.|+.++ +..++.+ ..|++++++||+ ......++.
T Consensus 5 kIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~--~ADiVvLaVpp~~~~~~v~~ei 80 (314)
T TIGR00465 5 TVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIP--QADLIMNLLPDEVQHEVYEAEI 80 (314)
T ss_pred EEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHh--cCCEEEEeCCcHhHHHHHHHHH
Confidence 3556698 9999999999999999866455554210 11 2466655 4777655 589999999999 544444444
Q ss_pred HHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 120 MEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 120 ~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
... .-+.+|.++.||+-+... ...-....+-.+-||+.|.
T Consensus 81 ~~~l~~g~iVs~aaG~~i~~~~---~~~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 81 QPLLKEGKTLGFSHGFNIHFVQ---IVPPKDVDVVMVAPKGPGT 121 (314)
T ss_pred HhhCCCCcEEEEeCCccHhhcc---ccCCCCCcEEEECCCCCcH
Confidence 432 123478899999754432 2221223466678999885
No 42
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.58 E-value=0.00025 Score=68.14 Aligned_cols=128 Identities=17% Similarity=0.309 Sum_probs=90.5
Q ss_pred CCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---ceecCcccccCHHHhhccCCCcEE
Q 019500 27 FTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANAS 103 (340)
Q Consensus 27 ~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i~G~p~y~sl~dip~~~~vDla 103 (340)
|.|.-.+++ +++.+.++|| |. |..|+.+..||++.|.+++.++-+.... .+-.|..+|. ++|+.. ..|++
T Consensus 6 yyd~da~l~-~LkgK~iaII--GY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k--~ADvi 78 (338)
T COG0059 6 YYDEDADLD-LLKGKKVAII--GY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAK--RADVV 78 (338)
T ss_pred eecccCChh-HhcCCeEEEE--ec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhh--cCCEE
Confidence 334445577 7777766655 98 8899999999999999977777665410 1347888875 777665 48999
Q ss_pred EEecChhhHHHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 104 AIYVPPPFAAAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 104 vi~vp~~~v~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
++.+|.+...++.++-++-.. ..++.|+.||+-.-.. + +- .+.-.+-++-|-|+|-..
T Consensus 79 m~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~-i-~p-pkdvdV~MVAPKgPG~~V 138 (338)
T COG0059 79 MILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL-I-VP-PKDVDVIMVAPKGPGHLV 138 (338)
T ss_pred EEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecce-e-cC-CccCcEEEEcCCCCcHHH
Confidence 999999999999887776543 3367899999743211 1 10 134457788999988543
No 43
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.58 E-value=0.00035 Score=68.59 Aligned_cols=175 Identities=19% Similarity=0.184 Sum_probs=101.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc----------CCeEEEeeCCCC-----CCce---------ecC-ccccc------C
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY----------GTKMVGGVTPKK-----GGTE---------HLG-LPVFN------T 90 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~----------G~~vv~~VnP~~-----~g~~---------i~G-~p~y~------s 90 (340)
.++|+|+|+ |++|+.+++.+.+. ++++++.+|++. .|-. -.| +..|+ +
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 478899999 99999998877643 467787777531 1100 011 23343 7
Q ss_pred HHHhhccCCCcEEEEecChhh-----HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 91 VAEAKAETKANASAIYVPPPF-----AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 91 l~dip~~~~vDlavi~vp~~~-----v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
+.++....++|++++++|+.. +.+.+++|+++|++. |.-+.+.-.....+|.+.+ +++|..+.=.-+.|-..|
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL~~~A-~~~g~~~~~ea~v~~glP 158 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKELKELA-KKNGVRFRYEATVGGAMP 158 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHHHHHH-HHcCCEEEEeeeeeechh
Confidence 888875557999999999754 378899999999876 3222233222345666665 778877652223333333
Q ss_pred C--CcccccCCCCCCCCCcEEEEe--cChHHHHHHHHHHHhCCCCceEEe----ecCC---CCCCCCCHHHH
Q 019500 166 G--ECKIGIMPGYIHKPGRIGIVS--RSGTLTYEAVFQTTAVGLGQSTCV----GIGG---DPFNGTNFVDC 226 (340)
Q Consensus 166 ~--~~~~~~~~~~~~~~G~valvS--QSG~l~~~~~~~~~~~giG~S~~v----s~Gn---~a~~dv~~~d~ 226 (340)
. .+.- ....+.|.=|. -||+..+ +++...+.|..|+.++ ..|- ++-.|++-.|.
T Consensus 159 ii~~l~~------~l~g~~I~~I~GIlnGT~ny-Il~~m~~~g~~f~~al~~Aq~~G~aE~DP~~D~~G~D~ 223 (341)
T PRK06270 159 IINLAKE------TLAGNDIKSIKGILNGTTNY-ILTRMEEEGLSYEQALAEAQELGYAEADPTYDVEGIDA 223 (341)
T ss_pred HHHHHHh------hcccCceEEEEEEEeCcHHH-HHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCccHHH
Confidence 3 1111 12234554432 2444433 4455555677777654 3442 22336666665
No 44
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.57 E-value=0.00022 Score=70.04 Aligned_cols=87 Identities=21% Similarity=0.215 Sum_probs=66.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCC---------Cce-----------e--cCcccccCHHHhhccC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKG---------GTE-----------H--LGLPVFNTVAEAKAET 98 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~---------g~~-----------i--~G~p~y~sl~dip~~~ 98 (340)
+++|.|+|+ |++|+.+++.+.+. ++++++.++++.. |-. . .+++++.+++++.+
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~-- 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE-- 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--
Confidence 368889999 99999999988764 7888866654320 000 0 25677788888875
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC
Q 019500 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
++|++++|+|+....+..+.++++|.+. |++++
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~V--I~~~~ 110 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKA--IFQGG 110 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEE--EEcCC
Confidence 5999999999999999999999999554 35665
No 45
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.56 E-value=0.00015 Score=63.83 Aligned_cols=118 Identities=22% Similarity=0.346 Sum_probs=75.4
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---ceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
|+.+.++|+ |. |+.|+.++.||++.|++++....+.... .+-.|..++ +++|..+ .-|++++.+|.+...+
T Consensus 2 l~~k~IAVi--Gy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~--~aDvV~~L~PD~~q~~ 75 (165)
T PF07991_consen 2 LKGKTIAVI--GY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVK--KADVVMLLLPDEVQPE 75 (165)
T ss_dssp HCTSEEEEE--S--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHH--C-SEEEE-S-HHHHHH
T ss_pred cCCCEEEEE--CC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHh--hCCEEEEeCChHHHHH
Confidence 455666555 99 8899999999999999977677665410 135788887 5777766 4899999999999999
Q ss_pred HHHHHHHcC--CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 115 AILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 115 ~v~ea~~~G--vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
+.++-++.. -..+++|+.||+-.- ..+. - .+.-++-++-|..+|-..
T Consensus 76 vy~~~I~p~l~~G~~L~fahGfni~~-~~i~-p-p~~vdV~mvAPKgpG~~v 124 (165)
T PF07991_consen 76 VYEEEIAPNLKPGATLVFAHGFNIHY-GLIK-P-PKDVDVIMVAPKGPGHLV 124 (165)
T ss_dssp HHHHHHHHHS-TT-EEEESSSHHHHC-TTS-----TTSEEEEEEESSSCHHH
T ss_pred HHHHHHHhhCCCCCEEEeCCcchhhc-Cccc-C-CCCCeEEEEecCCCChHH
Confidence 987776654 345788999996321 0111 0 123456677888777543
No 46
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.51 E-value=0.00029 Score=59.79 Aligned_cols=95 Identities=17% Similarity=0.086 Sum_probs=59.6
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-----eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
++...+|.|+|+ ||.|+.+.+.|.+.|+.+....+++.... .+.+.+ +.++.|+.. +.|+++|++|.+...
T Consensus 7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~-~~~~~~~~~--~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 7 QAARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA-ILDLEEILR--DADLVFIAVPDDAIA 82 (127)
T ss_dssp -----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGC--C-SEEEE-S-CCHHH
T ss_pred CCCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc-ccccccccc--cCCEEEEEechHHHH
Confidence 345678889999 99999999999999999775555543111 133444 445777766 589999999999999
Q ss_pred HHHHHHHHcC---CcEEEEecCCCChh
Q 019500 114 AAILEAMEAE---LDLVVCITEGIPQH 137 (340)
Q Consensus 114 ~~v~ea~~~G---vk~vvi~t~Gf~e~ 137 (340)
++.++....| -..+|+-|+|--..
T Consensus 83 ~va~~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 83 EVAEQLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHHHHHhccCCCCcEEEECCCCChH
Confidence 9999998772 34578889986443
No 47
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.49 E-value=0.00068 Score=65.13 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=74.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccC-CCcEEEEecChh-hHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~e 118 (340)
+|.++|. |.||..++++|.+.|++++ ..|+.... +. -.|..++.+++|+.+.. ++|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 4677799 9999999999999999854 56664310 11 24778888999887631 369999999987 66777666
Q ss_pred HHHc-CC-cEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCC
Q 019500 119 AMEA-EL-DLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPG 161 (340)
Q Consensus 119 a~~~-Gv-k~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~G 161 (340)
+... .- +.+|..+++. .....++.+.+ ++.|++++ .|.+-|
T Consensus 80 l~~~l~~g~ivid~st~~-~~~~~~~~~~~-~~~g~~~~dapvsG~ 123 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSY-YKDDIRRAELL-AEKGIHFVDVGTSGG 123 (301)
T ss_pred HHhhCCCCCEEEeCCCCC-hhHHHHHHHHH-HHcCCEEEeCCCCcC
Confidence 5543 11 2334344443 34445555555 67788866 454444
No 48
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.49 E-value=0.0006 Score=65.51 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=74.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccC-CCcEEEEecChh-hHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAET-KANASAIYVPPP-FAAAAILE 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~-~vDlavi~vp~~-~v~~~v~e 118 (340)
+|.++|. |+||..++++|.+.|++++ ..|++... +. -.|..++.+.+++.++. ..|++++++|++ .+.+++++
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 4667798 9999999999999999855 45654310 11 24778889999987531 269999999998 77777776
Q ss_pred HHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500 119 AMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 119 a~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviG 156 (340)
....- -+.+||-++.....+..++.+.+ +++|++++-
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~-~~~g~~~vd 117 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEEL-AERGIHYVD 117 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHH-HHcCCeEEe
Confidence 55432 23345555555555555565555 567777663
No 49
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.48 E-value=0.00053 Score=69.32 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=76.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHH--------c--CCeEEEeeCCCCC---CceecCcccccCHHHhhccCCCcEEEEecC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIE--------Y--GTKMVGGVTPKKG---GTEHLGLPVFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~--------~--G~~vv~~VnP~~~---g~~i~G~p~y~sl~dip~~~~vDlavi~vp 108 (340)
.++|.|+|+ |.+|+.+++.+.+ . ++++++.++++.. +....+...|.+++++....++|+++++++
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 578999999 9999988776543 2 3467766665431 112345668889999986557999999986
Q ss_pred h-hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 109 P-PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 109 ~-~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
+ +.+.+.+++|+++|.+.+. -......+...+|.+++ +++|+.+.
T Consensus 82 ~~~~~~~~~~~aL~~GkhVVt-aNK~~~a~~~~eL~~lA-~~~gv~l~ 127 (426)
T PRK06349 82 GIEPARELILKALEAGKHVVT-ANKALLAVHGAELFAAA-EEKGVDLY 127 (426)
T ss_pred CchHHHHHHHHHHHCCCeEEE-cCHHHHHHHHHHHHHHH-HHcCCcEE
Confidence 5 6678999999999987632 11222233456777766 78887755
No 50
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.47 E-value=0.00099 Score=64.44 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=70.1
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC--CCCCC---ceecCccc-ccCHHHhhcc---CCCcEEEEecChh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGG---TEHLGLPV-FNTVAEAKAE---TKANASAIYVPPP 110 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn--P~~~g---~~i~G~p~-y~sl~dip~~---~~vDlavi~vp~~ 110 (340)
+.++|.|+|. |++|+.++..+.+. ++++++.++ |...+ ..-.|++. |.+++++.+. .++|++++++|+.
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4578889994 99999988777764 677776654 43222 12368886 5889999864 4799999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGI 134 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf 134 (340)
.+.+....+.++|++. +..++-+
T Consensus 82 ~H~e~a~~a~eaGk~V-ID~sPA~ 104 (302)
T PRK08300 82 AHVRHAAKLREAGIRA-IDLTPAA 104 (302)
T ss_pred HHHHHHHHHHHcCCeE-EECCccc
Confidence 9999999999999876 5566543
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.46 E-value=0.0012 Score=61.20 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=78.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 117 (340)
+|.++|+ |.+|+.+.+.+.+. .++.++.-+..... . .-.+.++..+|+|+.+ .+|++|=|-.++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHHHHHHHhH
Confidence 5677899 99999999988764 57766554443310 1 1245555588999975 5999999999999999999
Q ss_pred HHHHcCCcEEEEecCCCChhhHHH-HHHHHhccCCcEEE
Q 019500 118 EAMEAELDLVVCITEGIPQHDMVR-VKAALNNQSKTRLV 155 (340)
Q Consensus 118 ea~~~Gvk~vvi~t~Gf~e~~~~~-l~~~aar~~girvi 155 (340)
++++.|+..+|+-..-+++++..+ +.+.+ +..|-++-
T Consensus 79 ~~L~~g~d~iV~SVGALad~~l~erl~~la-k~~~~rv~ 116 (255)
T COG1712 79 KILKAGIDVIVMSVGALADEGLRERLRELA-KCGGARVY 116 (255)
T ss_pred HHHhcCCCEEEEechhccChHHHHHHHHHH-hcCCcEEE
Confidence 999999999764444478777544 44444 66666644
No 52
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.45 E-value=0.001 Score=63.88 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=72.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhcc-CCCcEEEEecChhhHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAE-TKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea 119 (340)
+|.++|. |+||..++++|.+.|++++ ..|++... +. -.|...+.+++++.+. ..+|++++++|+..+.+++++.
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 4667798 9999999999999999855 45554310 11 1356667788776542 2479999999999888888776
Q ss_pred HHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500 120 MEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (340)
Q Consensus 120 ~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~ 160 (340)
...- - +.+|..+++.+ .+..++.+.+ ++.|++++.-.-.
T Consensus 80 ~~~l~~g~ivid~st~~~-~~t~~~~~~~-~~~g~~~vda~vs 120 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYY-KDSLRRYKLL-KEKGIHLLDCGTS 120 (298)
T ss_pred HhhCCCCCEEEECCCCCc-ccHHHHHHHH-HhcCCeEEecCCC
Confidence 6432 1 33343334443 3434444444 5678887764433
No 53
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.41 E-value=0.0014 Score=62.17 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=78.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC-ce-ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG-TE-HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g-~~-i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 117 (340)
.+|.|+|+ |.+|+.+++.+.+. ++++++...+.... +. ....+++.+++++... .+|++|-|-+++.+.+..+
T Consensus 3 ~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~~ 80 (267)
T PRK13301 3 HRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHAE 80 (267)
T ss_pred eEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHHH
Confidence 46788899 99999999988753 36766443332200 11 2337889999997432 6999999999999999999
Q ss_pred HHHHcCCcEEEEecCC-CChhhH-HHHHHHHhccCCcEEE
Q 019500 118 EAMEAELDLVVCITEG-IPQHDM-VRVKAALNNQSKTRLV 155 (340)
Q Consensus 118 ea~~~Gvk~vvi~t~G-f~e~~~-~~l~~~aar~~girvi 155 (340)
.++++|+..++ +|.| |.+.+. +++.+.+ +++|-++.
T Consensus 81 ~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A-~~~g~~i~ 118 (267)
T PRK13301 81 GCLTAGLDMII-CSAGALADDALRARLIAAA-EAGGARIR 118 (267)
T ss_pred HHHhcCCCEEE-EChhHhcCHHHHHHHHHHH-HhCCCEEE
Confidence 99999999855 6765 776654 4555555 66665654
No 54
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.41 E-value=0.00065 Score=65.23 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=67.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC--CCCCC---ceecCccc-ccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT--PKKGG---TEHLGLPV-FNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn--P~~~g---~~i~G~p~-y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
++|.|+|+ |++|+.++..+.+. ++++++.++ |...+ .+-.|++. |.+++++.+..++|++++++|+..+.+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 57788898 99999987776654 677666554 44322 12368875 5689998765579999999999999999
Q ss_pred HHHHHHcCCcEEEEecCC
Q 019500 116 ILEAMEAELDLVVCITEG 133 (340)
Q Consensus 116 v~ea~~~Gvk~vvi~t~G 133 (340)
..++.++|++. +..++-
T Consensus 81 a~~al~aGk~V-IdekPa 97 (285)
T TIGR03215 81 ARLLAELGKIV-IDLTPA 97 (285)
T ss_pred HHHHHHcCCEE-EECCcc
Confidence 99999999876 445553
No 55
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.36 E-value=0.0012 Score=55.00 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=62.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC-CCceec-Ccc---------ccc-CHHHhhccCCCcEEEEecChh
Q 019500 44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEHL-GLP---------VFN-TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~-~g~~i~-G~p---------~y~-sl~dip~~~~vDlavi~vp~~ 110 (340)
||.|+|++|..|+.+++.|.++ .+++++.+..+. .|+.+. ..| +-. +.+++. ++|+++.|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELS---DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHT---TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhh---cCCEEEecCchh
Confidence 5778899999999999999986 567776666554 444321 111 111 233442 599999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
...+...++++.|++. |=.++.|.
T Consensus 78 ~~~~~~~~~~~~g~~V-iD~s~~~R 101 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKV-IDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHTTSEE-EESSSTTT
T ss_pred HHHHHHHHHhhCCcEE-EeCCHHHh
Confidence 9999999999999954 66777664
No 56
>PRK07680 late competence protein ComER; Validated
Probab=97.35 E-value=0.0012 Score=62.56 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCC-c----eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-T----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g-~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
+|.|+|+ |+||..+++.|.+.|+ ..+...|++... + +..|++++.+..++.. +.|++++++|+..+.++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS--QSDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHH--hCCEEEEecCHHHHHHH
Confidence 4667798 9999999999998874 234466765310 1 1226777788888765 48999999999999999
Q ss_pred HHHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 116 ILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 116 v~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+++.... .-+.++-++.|.+ .+++.+.. ..+.+|++ ||
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~---~~~L~~~~-~~~~~r~~-p~ 118 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPIS---VEQLETLV-PCQVARII-PS 118 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCC---HHHHHHHc-CCCEEEEC-CC
Confidence 9886542 1235566777775 33444433 33445666 55
No 57
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.34 E-value=0.0016 Score=56.73 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCC-------------CCC-Cce-ecCcccccCHHHhhccCCCcEEEEec
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTP-------------KKG-GTE-HLGLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP-------------~~~-g~~-i~G~p~y~sl~dip~~~~vDlavi~v 107 (340)
+|.|+|+ |++|+.++..|.+.|.++. |.-++ ++. +.+ -..+.+..++++..+ +.|++++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~--~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE--DADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT--T-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC--cccEEEecc
Confidence 4677799 9999999999999997733 32221 110 000 123556778988876 589999999
Q ss_pred ChhhHHHHHHHHHHc--CCcEEEEecCCCChhh---H-HHHHHHHhccCCcE-EEccCC
Q 019500 108 PPPFAAAAILEAMEA--ELDLVVCITEGIPQHD---M-VRVKAALNNQSKTR-LVGPNC 159 (340)
Q Consensus 108 p~~~v~~~v~ea~~~--Gvk~vvi~t~Gf~e~~---~-~~l~~~aar~~gir-viGPNc 159 (340)
|+..+.+++++.... .-..+++.+-||.... . +.+.+.. ....+. +-||+-
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~-~~~~~~~lsGP~~ 135 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEIL-PIPRIAVLSGPSF 135 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHH-SSCGEEEEESS--
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHh-hhcceEEeeCccH
Confidence 999999999988763 2344566777993322 2 2233333 333344 557773
No 58
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.34 E-value=0.00085 Score=64.39 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=62.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCcccccCHHHhhccCCCcEEEEe
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------------LGLPVFNTVAEAKAETKANASAIY 106 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------------~G~p~y~sl~dip~~~~vDlavi~ 106 (340)
+|.|+|+ |.||..++..|.+.|+++. .++++..- +.+ .+.....++++..+ +.|+++++
T Consensus 3 kI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA--DADLILVA 78 (325)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh--CCCEEEEe
Confidence 5778899 9999999999999998843 44443200 000 13445567777765 58999999
Q ss_pred cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhhH
Q 019500 107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHDM 139 (340)
Q Consensus 107 vp~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~~~ 139 (340)
+|+..+.+++++.... .- +.++.++.|+..+..
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~ 113 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTG 113 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCC
Confidence 9999888888877653 21 234556668875433
No 59
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.0018 Score=63.27 Aligned_cols=122 Identities=10% Similarity=0.065 Sum_probs=89.8
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCCC-c---eecC---cccccCHHHhhccCCCcEEEEecChh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGG-T---EHLG---LPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~g-~---~i~G---~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+++-++|+ +++++...+.+.. .++++++..+|.... . +-.+ .++|.|.+++.+...+|+++|.+|..
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 4678888899 8888888877654 478899888885411 1 1133 57999999999876799999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
.+.+++..++++|-+.++=-....+.+|.+++.++| ++.|+.++ -....-..|
T Consensus 84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA-~~rgv~~m-eg~~~R~~P 136 (351)
T KOG2741|consen 84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAA-EARGVFFM-EGLWWRFFP 136 (351)
T ss_pred cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHH-HHcCcEEE-eeeeeecCc
Confidence 999999999999988543222356777888888887 77886644 233344444
No 60
>PLN02256 arogenate dehydrogenase
Probab=97.30 E-value=0.0018 Score=62.69 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=72.8
Q ss_pred hhhhhcccccccCCCCCCCCCCCCcccc-cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcc
Q 019500 10 VRSLYMSSEICCGQSRSFTTAPPPAPAV-FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLP 86 (340)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l-f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p 86 (340)
-|||-.- -|-..|.-.|+.. |..- -.++..+|.|+|+ |.||..+++.+.+.|++++ .++++.... .-.|+.
T Consensus 7 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~ 80 (304)
T PLN02256 7 PRSLRVR-AIDAAQPFDYESR---LQEELEKSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVS 80 (304)
T ss_pred CCCcccc-cccccCCCChHhH---HhHhhccCCCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCe
Confidence 3444332 3445566666655 4333 3567778999997 9999999999998898765 666654101 124677
Q ss_pred cccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 87 VFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 87 ~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
.+.+++++... ++|++++++|+....+++++.
T Consensus 81 ~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 81 FFRDPDDFCEE-HPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred eeCCHHHHhhC-CCCEEEEecCHHHHHHHHHhh
Confidence 78888887532 489999999999999999887
No 61
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.29 E-value=0.00098 Score=52.57 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCCc----eecCccccc-CHHHhhccCCCcEEEEecChhhHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGGT----EHLGLPVFN-TVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g~----~i~G~p~y~-sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
+|.++|+ |+||+.+.+.|.+.| .++....+++.... +-.+..++. +..|+.+ ..|++++++||..+.++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQ--EADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHH--HTSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhc--cCCEEEEEECHHHHHHH
Confidence 4667799 999999999999998 66552335543101 234556666 7888876 48999999999999999
Q ss_pred HHHH
Q 019500 116 ILEA 119 (340)
Q Consensus 116 v~ea 119 (340)
+++.
T Consensus 78 ~~~i 81 (96)
T PF03807_consen 78 LSEI 81 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 62
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.28 E-value=0.002 Score=61.37 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=69.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHH-HH---
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI--- 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v--- 116 (340)
+|.|+|. |.+|..+++++.+.|++++ ..|++... +. -.|.....+++++.+ +.|++++++|...... ++
T Consensus 4 ~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp~~~~~~~v~~~~ 79 (296)
T PRK11559 4 KVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLPNSPHVKEVALGE 79 (296)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCCCHHHHHHHHcCc
Confidence 5667798 9999999999999999855 56665310 11 246667788988876 5899999999655433 33
Q ss_pred HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500 117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG 156 (340)
+..... .-..+++-++..+....+++.+.+ ++.|++++-
T Consensus 80 ~~~~~~~~~g~iiid~st~~~~~~~~l~~~~-~~~g~~~~d 119 (296)
T PRK11559 80 NGIIEGAKPGTVVIDMSSIAPLASREIAAAL-KAKGIEMLD 119 (296)
T ss_pred chHhhcCCCCcEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence 222322 223444445555555556666655 455766553
No 63
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.28 E-value=0.0011 Score=64.24 Aligned_cols=111 Identities=23% Similarity=0.205 Sum_probs=70.2
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------cC------cccccCHHHhhccCCCcEEE
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LG------LPVFNTVAEAKAETKANASA 104 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------~G------~p~y~sl~dip~~~~vDlav 104 (340)
.++|.|+|+ |.||..++..|.+.|+++. .+++.... +.+ .| +....++++..+ +.|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~--~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA--GADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc--CCCEEE
Confidence 346778899 9999999999999999854 55654210 111 13 334557777654 589999
Q ss_pred EecChhhHHHHHHHHHHcCCcEEEEecCCCChhh--HHHHHHHHhc--cCCcE-EEccC
Q 019500 105 IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHD--MVRVKAALNN--QSKTR-LVGPN 158 (340)
Q Consensus 105 i~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~--~~~l~~~aar--~~gir-viGPN 158 (340)
+++|+..+.++++.+ +.+. .++.++.|+...+ .+++.+.+.+ ..++. +.|||
T Consensus 80 ~~v~~~~~~~v~~~l-~~~~-~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~ 136 (328)
T PRK14618 80 VAVPSKALRETLAGL-PRAL-GYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN 136 (328)
T ss_pred EECchHHHHHHHHhc-CcCC-EEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence 999999887777554 3343 4566788876443 3444444311 13443 45666
No 64
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.26 E-value=0.0021 Score=62.76 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=77.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCe-EEEee-------------CCCCCCc-e-ecCcccccCHHHhhccCCCcEEEEec
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGV-------------TPKKGGT-E-HLGLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~V-------------nP~~~g~-~-i~G~p~y~sl~dip~~~~vDlavi~v 107 (340)
+|.|+|+ |.+|+.+++.+.+.|.+ .+|.- ||++-.. . -.++....+++++.+ ..|++++.+
T Consensus 3 kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~--~ad~iv~av 79 (329)
T COG0240 3 KIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD--GADIIVIAV 79 (329)
T ss_pred eEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh--cCCEEEEEC
Confidence 5666699 99999999999999887 55663 4444211 1 134667888999987 589999999
Q ss_pred ChhhHHHHHHHHH---HcCCcEEEEecCCCChhhHHHHHHHHhccCC---cE-EEccCC
Q 019500 108 PPPFAAAAILEAM---EAELDLVVCITEGIPQHDMVRVKAALNNQSK---TR-LVGPNC 159 (340)
Q Consensus 108 p~~~v~~~v~ea~---~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g---ir-viGPNc 159 (340)
|.....++++... .++.+. ++.+-||..+..+.+-+.+.+..+ +- +.|||-
T Consensus 80 Ps~~~r~v~~~l~~~l~~~~~i-v~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 80 PSQALREVLRQLKPLLLKDAII-VSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred ChHHHHHHHHHHhhhccCCCeE-EEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 9999999999864 444544 668889976654444444322222 33 568874
No 65
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.014 Score=60.47 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=129.8
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC--CCCceecCcccccCH--HHhhccCCCcEEEEecCh---hh
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTEHLGLPVFNTV--AEAKAETKANASAIYVPP---PF 111 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~--~~g~~i~G~p~y~sl--~dip~~~~vDlavi~vp~---~~ 111 (340)
+...+++|+|| |..|...++.++.. .|..++.+|+. ..|.++.|+|+|.++ .++.++..+|.++++.|. +.
T Consensus 114 ~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~ 192 (588)
T COG1086 114 DNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEE 192 (588)
T ss_pred cCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHH
Confidence 45677889999 88999999988875 58888888864 346789999999864 444556778999999886 55
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCCCCCCCCcEEEEecC-
Q 019500 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRS- 189 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc~Gi~~p~~~~~~~~~~~~~~~G~valvSQS- 189 (340)
..+.++.|.+.|++.-++ +.+.+ ..+..... |+-.+. ++|=. |-..+..-. ...-.|+.-+|+-.
T Consensus 193 ~~~i~~~l~~~~~~v~~l--P~~~~--l~~~~~~l-reI~ieDLLgR~------pV~~d~~~i--~~~~~gK~vLVTGag 259 (588)
T COG1086 193 RRRILLRLARTGIAVRIL--PQLTD--LKDLNGQL-REIEIEDLLGRP------PVALDTELI--GAMLTGKTVLVTGGG 259 (588)
T ss_pred HHHHHHHHHhcCCcEEec--CcHHH--HHHhcccc-ccCCHHHHhCCC------CCCCCHHHH--HhHcCCCEEEEeCCC
Confidence 667899999999766442 22211 00000000 111110 11100 000111000 01334777777765
Q ss_pred hHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEE
Q 019500 190 GTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAF 269 (340)
Q Consensus 190 G~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvl 269 (340)
|+++.++..+..+. +....+=.+.+ ....-++-..|.+.-....+..|+-+ ++|.++..++.+..||=+++
T Consensus 260 GSiGsel~~qil~~--~p~~i~l~~~~---E~~~~~i~~el~~~~~~~~~~~~igd----VrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 260 GSIGSELCRQILKF--NPKEIILFSRD---EYKLYLIDMELREKFPELKLRFYIGD----VRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred CcHHHHHHHHHHhc--CCCEEEEecCc---hHHHHHHHHHHHhhCCCcceEEEecc----cccHHHHHHHHhcCCCceEE
Confidence 47889998887765 66777766665 23444555555553224445556555 77888888888878898888
Q ss_pred EeC
Q 019500 270 IAG 272 (340)
Q Consensus 270 k~G 272 (340)
.+-
T Consensus 331 HAA 333 (588)
T COG1086 331 HAA 333 (588)
T ss_pred Ehh
Confidence 744
No 66
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.25 E-value=0.0017 Score=60.98 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
.+|.|+|+ |++|..+++.+.+.| ++ +..++++... + +..|+.+..+..++.+ +.|++++++|+..+.++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~-v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~--~advVil~v~~~~~~~v 78 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKD-IIVSDPSPEKRAALAEEYGVRAATDNQEAAQ--EADVVVLAVKPQVMEEV 78 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcce-EEEEcCCHHHHHHHHHhcCCeecCChHHHHh--cCCEEEEEcCHHHHHHH
Confidence 35777799 999999999998877 44 4467765410 1 1136777778887765 58999999999999999
Q ss_pred HHHHHHcCCcEEEEecCCCChhhH
Q 019500 116 ILEAMEAELDLVVCITEGIPQHDM 139 (340)
Q Consensus 116 v~ea~~~Gvk~vvi~t~Gf~e~~~ 139 (340)
++++....-+.++-++.|.+.+..
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~l 102 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLARL 102 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHHH
Confidence 998876432456667788865443
No 67
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.25 E-value=0.0031 Score=59.87 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCCC--ce---ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~g--~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
.+|.++|+ |+||..+++.|.+.| ++++ ..|+.... +. -.|+....+..++.+ +.|++++++||+...
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~--~aDvVilav~p~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLT--DANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHh--cCCEEEEEeCHHHHH
Confidence 46778898 999999999999887 4443 56654310 11 136777778888765 489999999999999
Q ss_pred HHHHHHHHc-C-CcEEEEecCCCChhhHHH
Q 019500 114 AAILEAMEA-E-LDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 114 ~~v~ea~~~-G-vk~vvi~t~Gf~e~~~~~ 141 (340)
+++++.... . -+.+|-+.+|++.+..++
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 999877643 1 134454568997655443
No 68
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.20 E-value=0.0018 Score=61.85 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=72.5
Q ss_pred eCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH---HHHH
Q 019500 48 QGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI---LEAM 120 (340)
Q Consensus 48 vGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v---~ea~ 120 (340)
+|. |.||..++++|.+.|+++. ..|++... +. -.|.....+..++.+ +.|++++++|+ ..+.+++ +...
T Consensus 2 IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v~~g~~~l~ 77 (288)
T TIGR01692 2 IGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAE--GADRVITMLPAGQHVISVYSGDEGIL 77 (288)
T ss_pred Ccc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCcchHh
Confidence 588 9999999999999999854 55665410 11 246667788888876 58999999998 4456665 3444
Q ss_pred Hc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500 121 EA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 121 ~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG 156 (340)
+. .-..+++-+++++.+..+++.+.+ ++.|++++.
T Consensus 78 ~~~~~g~~vid~st~~p~~~~~~~~~~-~~~g~~~vd 113 (288)
T TIGR01692 78 PKVAKGSLLIDCSTIDPDSARKLAELA-AAHGAVFMD 113 (288)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEE
Confidence 33 223456667788777777777766 567888775
No 69
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.19 E-value=0.0037 Score=58.93 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=67.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
++|.++|+ |+||..+.+.|.+.+. +-++..+|+. +. .+.....+..++.+ +.|++++++||..+.+++++.
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~--~~D~Vilavkp~~~~~vl~~i 77 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAK--TCDIIVLAVKPDLAGKVLLEI 77 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHH--hCCEEEEEeCHHHHHHHHHHH
Confidence 46778898 9999999999988762 2355788765 22 24444556666655 489999999999999999987
Q ss_pred HHc-CCcEEEEecCCCChhhHHH
Q 019500 120 MEA-ELDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 120 ~~~-Gvk~vvi~t~Gf~e~~~~~ 141 (340)
... .-+.+|....|++.+..++
T Consensus 78 ~~~l~~~~iIS~~aGi~~~~l~~ 100 (260)
T PTZ00431 78 KPYLGSKLLISICGGLNLKTLEE 100 (260)
T ss_pred HhhccCCEEEEEeCCccHHHHHH
Confidence 642 2356777889998555543
No 70
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.17 E-value=0.0025 Score=60.71 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=69.2
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhhHHH-HH---H
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AI---L 117 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v---~ 117 (340)
|.|+|. |+||..+++++.+.|++++ .+|++... +. -.|.....+..++.+ +.|++++++|.....+ ++ +
T Consensus 2 IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~v~~~~~ 77 (291)
T TIGR01505 2 VGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTE--QADVIFTMVPDSPQVEEVAFGEN 77 (291)
T ss_pred EEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCcc
Confidence 556698 9999999999999999855 56665410 11 235556678888776 5899999999864433 33 2
Q ss_pred HHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc
Q 019500 118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP 157 (340)
Q Consensus 118 ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP 157 (340)
.+... .-..+++-++..+..+.+++.+.+ ++.|+.++.+
T Consensus 78 ~~~~~~~~g~iivd~st~~~~~~~~l~~~l-~~~g~~~~~~ 117 (291)
T TIGR01505 78 GIIEGAKPGKTLVDMSSISPIESKRFAKAV-KEKGIDYLDA 117 (291)
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEec
Confidence 23332 122344444555555556676665 5667887764
No 71
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.16 E-value=0.0084 Score=59.78 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=86.8
Q ss_pred CCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHHH
Q 019500 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALIK 258 (340)
Q Consensus 180 ~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~~ 258 (340)
.|+|++|+.+|+++...+|.+...|+.....+-+|..+ ..-.+.+.|+.+.+||++++|++.+=+. .....-++.+.+
T Consensus 256 ~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~ 334 (388)
T PRK00696 256 DGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIA 334 (388)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999998666677665543 3456788999999999999999764321 111122233333
Q ss_pred HhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHHH
Q 019500 259 ESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLEV 332 (340)
Q Consensus 259 a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~~ 332 (340)
+.+ .+|||++.-.| . ..+.....|+++| +...+++++-..++.++
T Consensus 335 ~~~~~~~~kPvv~~~~g-~----------------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~~~ 384 (388)
T PRK00696 335 AVKEVGVTVPLVVRLEG-T----------------------------NVELGKKILAESGLNIIAADTLDDAAQKAVEA 384 (388)
T ss_pred HHHhcCCCCcEEEEeCC-C----------------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHHHH
Confidence 333 47999665433 1 2234467789999 88999999987776643
No 72
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.15 E-value=0.0066 Score=60.49 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=87.7
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccC-CCcHHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIG-GTAEEDAAALI 257 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~~~~f~ 257 (340)
..|+|++++-.|+++...+|.+...|.-...++-+|..+ ..-.+.+.|+-+.+||++++|++++-+. .....-++.+.
T Consensus 255 l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~ 333 (386)
T TIGR01016 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLV 333 (386)
T ss_pred cCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 579999999999999999999999898887888777654 2456788999999999999999875521 11112223333
Q ss_pred HHhC-C--CCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHH
Q 019500 258 KESG-T--EKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLE 331 (340)
Q Consensus 258 ~a~r-~--~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~ 331 (340)
++.+ . +|||++.-.|. ..+.....|+++| +...+++++-...+-+
T Consensus 334 ~a~~~~~~~kPvvv~~~g~-----------------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~~ 383 (386)
T TIGR01016 334 EALKEVGVNVPVVVRLEGT-----------------------------NVEEGKKILAESGLNIIFATSMEEAAEKAVE 383 (386)
T ss_pred HHHHhcCCCCcEEEEeCCc-----------------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence 3333 3 39996654331 2234467788999 9999999886665543
No 73
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.11 E-value=0.00039 Score=57.28 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCCCcchHHHHHHHHc----CCeEEEeeCCC--CCC---ceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 49 GITGKNGTFHTEQAIEY----GTKMVGGVTPK--KGG---TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 49 Gasgk~G~~v~~~l~~~----G~~vv~~VnP~--~~g---~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
|+ |++|+.+++.+.+. ++++++..|.+ ... ....+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 44 78899999888764 67788777766 100 1134556778999998744699999999999999999999
Q ss_pred HHcCCcEEEEecCC-CC-hhhHHHHHHHHhccCCcEEE
Q 019500 120 MEAELDLVVCITEG-IP-QHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 120 ~~~Gvk~vvi~t~G-f~-e~~~~~l~~~aar~~girvi 155 (340)
+++|++.+. .+-+ ++ .....+|.+++ +++|.++.
T Consensus 80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A-~~~g~~~~ 115 (117)
T PF03447_consen 80 LERGKHVVT-ANKGALADEALYEELREAA-RKNGVRIY 115 (117)
T ss_dssp HHTTCEEEE-S-HHHHHSHHHHHHHHHHH-HHHT-EEE
T ss_pred HHCCCeEEE-ECHHHhhhHHHHHHHHHHH-HHcCCEEE
Confidence 999998743 3333 33 12355666665 78887764
No 74
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.08 E-value=0.0024 Score=61.28 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=71.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeE-EEeeCCCCCCcee--cCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHH-
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTEH--LGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE- 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~v-v~~VnP~~~g~~i--~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e- 118 (340)
+|.++|. |+||..+.++|.+.|+++ ++-.+|+. +.. .|.....+..++.+ ..|++++++|.+. +.+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~--~advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTE--ASDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHh--cCCEEEEeCCChHHHHHHHcCC
Confidence 4667798 999999999999999984 44445543 222 46777788888876 5899999999873 3444321
Q ss_pred --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500 119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG 156 (340)
+... .-..+|+-++..+....+++.+.+ ++.|++++.
T Consensus 77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~-~~~G~~~vd 116 (292)
T PRK15059 77 NGCTKASLKGKTIVDMSSISPIETKRFARQV-NELGGDYLD 116 (292)
T ss_pred cchhccCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCCEEE
Confidence 1221 112355566666667677777766 567777664
No 75
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.07 E-value=0.0023 Score=62.48 Aligned_cols=119 Identities=21% Similarity=0.328 Sum_probs=78.0
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
..|..+.+. |+|. |++|+.++++|+++|++++...+|....+ ...|..++ +++|+.. ..|++++.+|.+...
T Consensus 12 ~~LkgKtVG--IIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak--~ADVV~llLPd~~t~ 85 (335)
T PRK13403 12 ELLQGKTVA--VIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVR--TAQVVQMLLPDEQQA 85 (335)
T ss_pred hhhCcCEEE--EEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHh--cCCEEEEeCCChHHH
Confidence 344455554 5599 99999999999999999764434422101 13466654 8999887 589999999987777
Q ss_pred HHHHHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500 114 AAILEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163 (340)
Q Consensus 114 ~~v~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~ 163 (340)
+++.+-+.. .-..+++|+.||+-.-. .+. - -+.-++-++-|-++|-.
T Consensus 86 ~V~~~eil~~MK~GaiL~f~hgfni~~~-~i~-p-p~~vdv~mvaPKgpG~~ 134 (335)
T PRK13403 86 HVYKAEVEENLREGQMLLFSHGFNIHFG-QIN-P-PSYVDVAMVAPKSPGHL 134 (335)
T ss_pred HHHHHHHHhcCCCCCEEEECCCcceecC-cee-C-CCCCeEEEECCCCCChH
Confidence 777543333 33467889999964211 111 0 13345667788888754
No 76
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.06 E-value=0.0058 Score=58.16 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=65.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCCC--ce----ecCcccccCHHHhhccCCCcEEEEecChhhHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKGG--TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~g--~~----i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~ 113 (340)
+|.++|+ |+||..+++.|.+.| .+++ .++++... .. ..+..+..+..++.+ +.|++++++|+..+.
T Consensus 3 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~--~aDvVilavpp~~~~ 78 (277)
T PRK06928 3 KIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFT--KCDHSFICVPPLAVL 78 (277)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHh--hCCEEEEecCHHHHH
Confidence 4667798 999999999998877 4444 56654310 11 223445567777765 589999999999999
Q ss_pred HHHHHHHHc--CCcEEEEecCCCChhhHHH
Q 019500 114 AAILEAMEA--ELDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 114 ~~v~ea~~~--Gvk~vvi~t~Gf~e~~~~~ 141 (340)
++++++... .-+.++.++.|++.+++++
T Consensus 79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLE 108 (277)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 999888542 1235677888997665443
No 77
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.05 E-value=0.0044 Score=60.83 Aligned_cols=121 Identities=19% Similarity=0.124 Sum_probs=75.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHH--------cC--CeEEEeeCCCC-----CCceec---------C-cccc-------c
Q 019500 42 NTRVICQGITGKNGTFHTEQAIE--------YG--TKMVGGVTPKK-----GGTEHL---------G-LPVF-------N 89 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~--------~G--~~vv~~VnP~~-----~g~~i~---------G-~p~y-------~ 89 (340)
.++|+|+|. |+.|+.+++.+.+ +| .++++..|.+. .|-.+. | +.-| +
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 478899999 9999988876655 46 45665544321 011110 0 1111 1
Q ss_pred -CHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 90 -TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 90 -sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
++.++....++|++|.+++++.+.+...++++.|++.+ ..+.|.-....+++.+++ +++|.++.=.-+.|.--|
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VV-tanK~~la~~~~el~~la-~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVV-TSNKPPIAFHYDELLDLA-NERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEE-ECCHHHHHhCHHHHHHHH-HHcCCeEEEeccccccCC
Confidence 56677643469999999999999999999999999974 345441112234555554 678887664444443333
No 78
>PRK06091 membrane protein FdrA; Validated
Probab=97.04 E-value=0.3 Score=51.00 Aligned_cols=253 Identities=18% Similarity=0.168 Sum_probs=138.9
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEec--ChhhHH
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYV--PPPFAA 113 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~v--p~~~v~ 113 (340)
+.+-++. +++.||.++..+...+.+.|..+-+.|.-... .+++.|+..-.-|+-+.+....++++++. |.+.+.
T Consensus 191 ~~~G~Ig--iVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~ 268 (555)
T PRK06091 191 MPEGNIG--VIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVR 268 (555)
T ss_pred CCCCCEE--EEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHH
Confidence 3344555 45999998888888887765543333443220 01244655555566665544678888888 445555
Q ss_pred HHHHHHH-HcCCcEEEEecCCCChh-----------hHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCC
Q 019500 114 AAILEAM-EAELDLVVCITEGIPQH-----------DMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPG 181 (340)
Q Consensus 114 ~~v~ea~-~~Gvk~vvi~t~Gf~e~-----------~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G 181 (340)
+-+.+++ +.+.+. |++-.|-++. +.+++.+.+..-.+......+ + + .+..+
T Consensus 269 ~~fl~aar~~~KPV-Vvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~~~~~---~-----------~--~~~~~ 331 (555)
T PRK06091 269 LKIINAMKATGKPV-VALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTAQRNA---I-----------L--PVSQG 331 (555)
T ss_pred HHHHHHHhhCCCCE-EEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccccccc---c-----------c--cccCC
Confidence 5444444 445554 5566665442 233333332100011111111 0 0 02223
Q ss_pred cEEEEecChHHHHHHHHHHHhCCCCce----------------EEeecCCCCCC------CCCH---HHHHHHhhcCCCc
Q 019500 182 RIGIVSRSGTLTYEAVFQTTAVGLGQS----------------TCVGIGGDPFN------GTNF---VDCVTKFIADPQT 236 (340)
Q Consensus 182 ~valvSQSG~l~~~~~~~~~~~giG~S----------------~~vs~Gn~a~~------dv~~---~d~l~~l~~Dp~T 236 (340)
.|==+.--|+++.+.+ .+.+...++. .+|-+|.+.|+ .+|. .+.|.-.+.||+|
T Consensus 332 ~irGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~ 410 (555)
T PRK06091 332 FICGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQV 410 (555)
T ss_pred eeEEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcc
Confidence 3333334589999887 5655554433 35556655421 1222 3556667789999
Q ss_pred cEEEEEEc-cCCCcHHHHHHHHHHh------C---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHH
Q 019500 237 EGIILIGE-IGGTAEEDAAALIKES------G---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQD 306 (340)
Q Consensus 237 ~~I~ly~E-~~g~~~~~~~~f~~a~------r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~ 306 (340)
.+|+|-+. +.|....-+..++.++ + |.-+||+...|.-.. - -+.+-
T Consensus 411 ~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D-p-----------------------Q~~~~ 466 (555)
T PRK06091 411 RVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD-P-----------------------QCRSQ 466 (555)
T ss_pred eEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC-C-----------------------cCHHH
Confidence 99999766 3444322223444332 2 445666677774333 1 12233
Q ss_pred HHHHHHHcCCeecCCHHHHHHHHHHHHH
Q 019500 307 KIKTLREAGVTVVESPAKIGAAMLEVFK 334 (340)
Q Consensus 307 ~~a~~~qaGvv~v~~~~el~~~~~~~~~ 334 (340)
-.+.|+.+|+++++|-.+...++..+..
T Consensus 467 q~~~L~~aGv~v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 467 QIATLEDAGIAVVDSLPEATLLAAALIR 494 (555)
T ss_pred HHHHHHhCCeEEEcCcHHHHHHHHHHhh
Confidence 4578999999999999999988887663
No 79
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.00 E-value=0.0042 Score=58.19 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=65.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC----eEEEee-CCCCCCce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT----KMVGGV-TPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~----~vv~~V-nP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
+|.++|. |+||..+++.|.+.|+ +++ .. |++....+ -.|+....+..++.+ +.|++++++|++.+.++
T Consensus 2 kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 2 RVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVK--SSDVIILAVKPQVVKDV 77 (266)
T ss_pred eEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHh--cCCEEEEEECcHHHHHH
Confidence 4667798 9999999999999887 544 55 66541111 247777888888775 58999999999999999
Q ss_pred HHHHHHc-CC-cEEEEecCCCChhhHH
Q 019500 116 ILEAMEA-EL-DLVVCITEGIPQHDMV 140 (340)
Q Consensus 116 v~ea~~~-Gv-k~vvi~t~Gf~e~~~~ 140 (340)
++++... .- +.+|-.++|.+.++.+
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~ 104 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQ 104 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence 9877543 11 3345455777644443
No 80
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.98 E-value=0.0062 Score=60.59 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=56.5
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
|...+|+|+|..|.||..+++.+.+.|+++. .+|++. ..+.+++.. +.|++++++|.....+++++.
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~--~aDlVilavP~~~~~~~~~~l 162 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILA--DAGMVIVSVPIHLTEEVIARL 162 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHh--cCCEEEEeCcHHHHHHHHHHH
Confidence 4556788889669999999999999998854 666542 135556554 589999999999999999886
Q ss_pred HHcCCcEEE
Q 019500 120 MEAELDLVV 128 (340)
Q Consensus 120 ~~~Gvk~vv 128 (340)
....-..+|
T Consensus 163 ~~l~~~~iv 171 (374)
T PRK11199 163 PPLPEDCIL 171 (374)
T ss_pred hCCCCCcEE
Confidence 653333433
No 81
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.0042 Score=61.73 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=65.4
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcC-------Ce-EEEeeCCCCCC--------------ceec------CcccccC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYG-------TK-MVGGVTPKKGG--------------TEHL------GLPVFNT 90 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G-------~~-vv~~VnP~~~g--------------~~i~------G~p~y~s 90 (340)
..+..+|.|+|+ |.+|+.++..+.+.| .+ .+|.-|+...+ +-.. .+.+..+
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 345667888899 999999999988776 45 45554542100 0011 2334556
Q ss_pred HHHhhccCCCcEEEEecChhhHHHHHHHHHH--cC--CcEEEEecCCCChh
Q 019500 91 VAEAKAETKANASAIYVPPPFAAAAILEAME--AE--LDLVVCITEGIPQH 137 (340)
Q Consensus 91 l~dip~~~~vDlavi~vp~~~v~~~v~ea~~--~G--vk~vvi~t~Gf~e~ 137 (340)
+.++.+ +.|++++++|+..+.+++++... .- -..+|.++-|+..+
T Consensus 87 l~eav~--~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 87 LKEAVE--DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHHHh--cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 777665 58999999999999999999875 21 12466688899643
No 82
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.95 E-value=0.0071 Score=57.57 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
+|.++|+ |+||..+++.|.+.|+ .-++..|++... +. -.|+..+.+..++.. +.|++++++||..+.+++
T Consensus 4 ~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~--~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 4 QIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVAN--SADILILSIKPDLYSSVI 80 (272)
T ss_pred eEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHh--hCCEEEEEeChHHHHHHH
Confidence 5677798 9999999999998775 235577875421 11 146777778888765 489999999999999999
Q ss_pred HHHHHc--CCcEEEEecCCCChhhHHH
Q 019500 117 LEAMEA--ELDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 117 ~ea~~~--Gvk~vvi~t~Gf~e~~~~~ 141 (340)
++.... +-+.+|=+..|++-+++++
T Consensus 81 ~~l~~~~~~~~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGKSIKSTEN 107 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCCcHHHHHH
Confidence 887642 2235566668987555443
No 83
>PLN02712 arogenate dehydrogenase
Probab=96.94 E-value=0.0072 Score=64.55 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCCCCCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCC
Q 019500 22 GQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETK 99 (340)
Q Consensus 22 ~~~~~~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~ 99 (340)
.|--.|+... -......+..+|.|+|. |+||..+++.|.+.|++++ .+|+....+ .-.|+..+.+++++... .
T Consensus 351 ~~~~~~~~~~--~~~~~~~~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~ 425 (667)
T PLN02712 351 AQKYEYNAQV--SGCVNDGSKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-H 425 (667)
T ss_pred cCCCCccchh--hhccCCCCCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-C
Confidence 3444555542 22222345667888897 9999999999999998865 666553101 12466678889887642 4
Q ss_pred CcEEEEecChhhHHHHHHHHHH
Q 019500 100 ANASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 100 vDlavi~vp~~~v~~~v~ea~~ 121 (340)
.|++++++|+....+++++...
T Consensus 426 aDvVILavP~~~~~~vi~~l~~ 447 (667)
T PLN02712 426 PEVILLCTSILSTEKVLKSLPF 447 (667)
T ss_pred CCEEEECCChHHHHHHHHHHHH
Confidence 7999999999999999998764
No 84
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.91 E-value=0.0062 Score=58.47 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=69.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHH-
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILE- 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~e- 118 (340)
+|.++|. |+||..++++|.+.|+++. ..|++... ++ -.|.....+..++.+ ..|++++++|++. +.+++..
T Consensus 3 ~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~--~aDvVi~~vp~~~~~~~vl~~~ 78 (296)
T PRK15461 3 AIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAA--GAEFVITMLPNGDLVRSVLFGE 78 (296)
T ss_pred eEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEecCCHHHHHHHHcCc
Confidence 4667799 9999999999999999854 66765410 11 136667778888876 5899999999985 4444431
Q ss_pred --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccC
Q 019500 119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN 158 (340)
Q Consensus 119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPN 158 (340)
..+. .-..+++-++-++....+++.+.+ ++.|++++ .|-
T Consensus 79 ~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l-~~~g~~~ldapV 121 (296)
T PRK15461 79 NGVCEGLSRDALVIDMSTIHPLQTDKLIADM-QAKGFSMMDVPV 121 (296)
T ss_pred ccHhhcCCCCCEEEECCCCCHHHHHHHHHHH-HHcCCcEEEccC
Confidence 2221 112233334434445556666655 56777766 444
No 85
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0057 Score=61.13 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=68.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCC-cee------------cCcccccCHHHhhccCCCcEEEEecC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGG-TEH------------LGLPVFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g-~~i------------~G~p~y~sl~dip~~~~vDlavi~vp 108 (340)
.+|+|+|+ |+.|+.++.+|.+.+ +++. ..+..... ..+ ..+--.+.+.++.. +.|++|.+.|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP 77 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence 36788899 999999999988877 7644 44433100 011 12222335666666 3699999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 109 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 109 ~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
+.....+++.|++.|++.+- .| -..+. ..++.+.+ +++|+.++
T Consensus 78 ~~~~~~i~ka~i~~gv~yvD-ts-~~~~~-~~~~~~~a-~~Agit~v 120 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVD-TS-YYEEP-PWKLDEEA-KKAGITAV 120 (389)
T ss_pred chhhHHHHHHHHHhCCCEEE-cc-cCCch-hhhhhHHH-HHcCeEEE
Confidence 99999999999999999843 23 22222 23344443 56666654
No 86
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.88 E-value=0.0043 Score=61.08 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=65.0
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCC-CCcee---cC-cc-----ccc--CHHHhhccCCCcEEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKK-GGTEH---LG-LP-----VFN--TVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~-~g~~i---~G-~p-----~y~--sl~dip~~~~vDlavi~vp~ 109 (340)
++|+|+|+||..|..+++.|.++ ++++++.+.++. .|+.+ .+ ++ .+. +.+++.+ ++|++++|+|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 36778899999999999999987 677775545433 33322 11 11 133 3445443 59999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCCh
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQ 136 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e 136 (340)
....+.+.++.++|++. |-.++.|.-
T Consensus 79 ~~s~~~~~~~~~~G~~V-IDlS~~fR~ 104 (346)
T TIGR01850 79 GVSAELAPELLAAGVKV-IDLSADFRL 104 (346)
T ss_pred hHHHHHHHHHHhCCCEE-EeCChhhhc
Confidence 99999999999999654 667877753
No 87
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.81 E-value=0.008 Score=59.21 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=61.1
Q ss_pred EEEeCCCCCcchHHHHHHHHcC--------Ce-EEEeeCC-------------CCCCce-ecC------cccccCHHHhh
Q 019500 45 VICQGITGKNGTFHTEQAIEYG--------TK-MVGGVTP-------------KKGGTE-HLG------LPVFNTVAEAK 95 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G--------~~-vv~~VnP-------------~~~g~~-i~G------~p~y~sl~dip 95 (340)
|.|+|+ |++|+.++..+.+.| .+ .+|..++ .+.... ..| +....+++++.
T Consensus 2 I~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 2 VAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 566799 999999999888877 66 4444311 110000 113 33556788876
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 019500 96 AETKANASAIYVPPPFAAAAILEAMEAE--LDLVVCITEGIPQH 137 (340)
Q Consensus 96 ~~~~vDlavi~vp~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~ 137 (340)
+ +.|++++++|+....+++++....- -+.+|.++-|+..+
T Consensus 81 ~--~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 K--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred h--cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 5 5899999999999999888876432 23467788899755
No 88
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.011 Score=60.07 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=70.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
+|.|+|..|.+|..+++.+.+.|+++. .++++... .+ -.|+....+..+..+ +.|++++++|++...+++++.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~--~aDvVIlavp~~~~~~vl~~l 78 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAK--DADIVIISVPINVTEDVIKEV 78 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhc--cCCEEEEecCHHHHHHHHHHH
Confidence 567789779999999999999998744 44443210 11 246665667777665 589999999999999999887
Q ss_pred HHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 120 MEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 120 ~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
...- -..+++-.+.......+.+.+.. ..+.+++|-.
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~--~~~~~~V~~H 116 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYA--PEGVEILPTH 116 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhc--CCCCEEEEcC
Confidence 7542 23333333333333344444432 3356666543
No 89
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.79 E-value=0.01 Score=57.17 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=60.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~ 122 (340)
.+|.|+|+ |++|+.+++.|.+.|+++. ..|++. . .+++++.+ +.|++++++|.+.+.++++.....
T Consensus 5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~--~advvi~~vp~~~~~~v~~~l~~~ 70 (308)
T PRK14619 5 KTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLA--DADVIVSAVSMKGVRPVAEQVQAL 70 (308)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHh--cCCEEEEECChHHHHHHHHHHHHh
Confidence 45777899 9999999999999999865 667654 1 46777765 589999999999888888776542
Q ss_pred CC---cEEEEecCCCChhh
Q 019500 123 EL---DLVVCITEGIPQHD 138 (340)
Q Consensus 123 Gv---k~vvi~t~Gf~e~~ 138 (340)
.. ..++..|.|+.++.
T Consensus 71 ~~~~~~ivi~~s~gi~~~~ 89 (308)
T PRK14619 71 NLPPETIIVTATKGLDPET 89 (308)
T ss_pred cCCCCcEEEEeCCcccCCC
Confidence 22 23444455776543
No 90
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.78 E-value=0.0042 Score=54.21 Aligned_cols=86 Identities=21% Similarity=0.220 Sum_probs=59.7
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc-------cCHHHhhccCCCcEEEEecC-----hhhH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-------NTVAEAKAETKANASAIYVP-----PPFA 112 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y-------~sl~dip~~~~vDlavi~vp-----~~~v 112 (340)
|+|.|+||..|+.+++.|.+.|+++...+-....-++..++.+. .++.+... ++|.++.+.+ .+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 56789999999999999999999977555322100111222222 23555554 6999999998 4556
Q ss_pred HHHHHHHHHcCCcEEEEecC
Q 019500 113 AAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vvi~t~ 132 (340)
..+++.|.+.|++.++++++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccceeeec
Confidence 77777888889998877664
No 91
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.78 E-value=0.21 Score=46.84 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=56.2
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCC-ceecCcc-cccC---HHHhhc---c-CC-CcEEEEecCh----
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGG-TEHLGLP-VFNT---VAEAKA---E-TK-ANASAIYVPP---- 109 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g-~~i~G~p-~y~s---l~dip~---~-~~-vDlavi~vp~---- 109 (340)
|+|.|+||..|+.+++.|.+.|+++...+ ||.... ..+..++ -|.+ +.+... . .. +|.++.+.|.
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~ 81 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDL 81 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCCh
Confidence 67889999999999999999999866444 343210 1111111 2233 333321 0 14 7888877763
Q ss_pred -hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 -PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 -~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+....+++.|.+.|++.+|..++
T Consensus 82 ~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 82 APPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeec
Confidence 34567888889999999776654
No 92
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.77 E-value=0.0091 Score=55.93 Aligned_cols=95 Identities=6% Similarity=0.008 Sum_probs=63.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCCCCCC-ce----ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTK--MVGGVTPKKGG-TE----HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP~~~g-~~----i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
+|.++|+ |+||+.+.+.|.+.|+. .+...|++... ++ ..|...+.+..++.+ +.|++++++|++...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~--~aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVD--RSDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHH--hCCEEEEEeCHHHHHHHH
Confidence 4667798 99999999999987764 23355654310 11 225677888888865 489999999999999988
Q ss_pred HHHHHcCCcEEEEecCCCChhhHHH
Q 019500 117 LEAMEAELDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~ 141 (340)
++..-..=+.++-+..|.+-+.+++
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~ 103 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLE 103 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHH
Confidence 7752112234454556665444443
No 93
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.74 E-value=0.013 Score=57.49 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=62.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC------C---ceec-------CcccccCHHHhhccCCCcEEEE
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG------G---TEHL-------GLPVFNTVAEAKAETKANASAI 105 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~------g---~~i~-------G~p~y~sl~dip~~~~vDlavi 105 (340)
..+|.|+|+ |.+|...+..|.+.|...++..+|... + +... .+.+..++++..+ +.|++++
T Consensus 7 ~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~--~aDlVil 83 (341)
T PRK12439 7 EPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN--CADVVVM 83 (341)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh--cCCEEEE
Confidence 456788899 999999999998888444544443210 0 0011 1234456766554 5899999
Q ss_pred ecChhhHHHHHHHHHHc-CCc-EEEEecCCCChh
Q 019500 106 YVPPPFAAAAILEAMEA-ELD-LVVCITEGIPQH 137 (340)
Q Consensus 106 ~vp~~~v~~~v~ea~~~-Gvk-~vvi~t~Gf~e~ 137 (340)
++|+..+.+++++.... .-+ .++.++-|+...
T Consensus 84 avps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 84 GVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 99999999999888754 222 467788899754
No 94
>PLN02712 arogenate dehydrogenase
Probab=96.70 E-value=0.017 Score=61.81 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=58.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea 119 (340)
..+|.|+|. |+||..+++.|.+.|++++ .++++.... .-.|+..+.+.+++..+ ..|++++++|+....+++++.
T Consensus 52 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~vl~~l 128 (667)
T PLN02712 52 QLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENVLKSL 128 (667)
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHHHHhh
Confidence 356888897 9999999999999998865 566543101 12477778888886532 489999999999999999886
Q ss_pred H
Q 019500 120 M 120 (340)
Q Consensus 120 ~ 120 (340)
.
T Consensus 129 ~ 129 (667)
T PLN02712 129 P 129 (667)
T ss_pred h
Confidence 4
No 95
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.67 E-value=0.013 Score=56.41 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=67.5
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce---ecCc--ccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~---i~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
.+|.|+|+ |.+|..+++.+.+.|+ ..+..++++....+ -.|. ....+..+..+ +.|++++++|+....+++
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvViiavp~~~~~~v~ 83 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGASGAVA 83 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhc--CCCEEEECCCHHHHHHHH
Confidence 35777897 9999999999998886 23446676541001 1232 23456666654 589999999999888888
Q ss_pred HHHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500 117 LEAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (340)
Q Consensus 117 ~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc 159 (340)
++.... .-+.+++-.++....-.+++.+.. ..++++++-+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~--~~~~~~v~~hP 125 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHL--PEGVHFIPGHP 125 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhC--CCCCeEEeCCC
Confidence 776543 223344334444433333333321 34667776443
No 96
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.64 E-value=0.012 Score=60.80 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=72.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee------cCcc---cccCHHHhhcc-CCCcEEEEecChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LGLP---VFNTVAEAKAE-TKANASAIYVPPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i------~G~p---~y~sl~dip~~-~~vDlavi~vp~~~v 112 (340)
+|.++|. |.||+.+++||.+.||++. .-|+.... +++ .|.. .+.|++|+.+. ..+|++++++|....
T Consensus 8 ~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 8 RIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 3566699 9999999999999999855 55665411 111 1433 67899998862 248999999998765
Q ss_pred HHHH-HHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 113 AAAI-LEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 113 ~~~v-~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
.+.+ +.....- -..+||=.+-...++.+++.+.+ ++.|+++++---.|
T Consensus 86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l-~~~Gi~fldapVSG 135 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA-AEKGLLYLGMGVSG 135 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-HHcCCeEEeCCCcC
Confidence 5544 4444331 22233333333344555555555 67889988755554
No 97
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.64 E-value=0.012 Score=56.56 Aligned_cols=118 Identities=24% Similarity=0.280 Sum_probs=79.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH--
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE-- 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e-- 118 (340)
+|..+|. |.||.-.+++|.+.||+ .+|-.+|...-+ .-.|...+.+..|... ..|++|.++|.......+-.
T Consensus 2 kIafIGL-G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~V~~V~~g~ 78 (286)
T COG2084 2 KIAFIGL-GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAA--EADVVITMLPDDAAVRAVLFGE 78 (286)
T ss_pred eEEEEcC-chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHH--hCCEEEEecCCHHHHHHHHhCc
Confidence 4556699 99999999999999998 444444443101 1348899999988887 59999999998666554442
Q ss_pred --HHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE-ccCCCCcccC
Q 019500 119 --AMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPNCPGVIKP 165 (340)
Q Consensus 119 --a~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi-GPNc~Gi~~p 165 (340)
.++. .-..+||-.+-.+.+..+++.+.+ ++.|++.+ .|=+-|....
T Consensus 79 ~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~-~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 79 NGLLEGLKPGAIVIDMSTISPETARELAAAL-AAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred cchhhcCCCCCEEEECCCCCHHHHHHHHHHH-HhcCCcEEecCccCCchhh
Confidence 2221 223455556666777777777776 67887765 5555555443
No 98
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.59 E-value=0.013 Score=60.00 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=71.3
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--c-----CcccccCHHHhhcc-CCCcEEEEecCh-hhHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--L-----GLPVFNTVAEAKAE-TKANASAIYVPP-PFAAA 114 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~-----G~p~y~sl~dip~~-~~vDlavi~vp~-~~v~~ 114 (340)
|.++|. |.||..++++|.+.|+++. ..|++... ++. . ++..+.+++++.+. ..+|++++++|+ +.+.+
T Consensus 2 IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 2 IGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred EEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 445698 9999999999999999854 55654310 111 1 25677888887742 258999999999 56677
Q ss_pred HHHHHHHcC-C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 115 AILEAMEAE-L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 115 ~v~ea~~~G-v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
+++++...- - +.+|-.++....+..++ .+.+ ++.|+++++---.|
T Consensus 80 Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l-~~~gi~fvdapVsG 126 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNSHYPDTERR-YKEL-KAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHH-HhcCCEEEcCCCCC
Confidence 776665431 1 33444444443333333 3334 56788888655554
No 99
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.55 E-value=0.017 Score=55.96 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=62.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC----------Cce-ec------CcccccCHHHhhccCCCcEEEEe
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----------GTE-HL------GLPVFNTVAEAKAETKANASAIY 106 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~----------g~~-i~------G~p~y~sl~dip~~~~vDlavi~ 106 (340)
+|.|+|+ |.+|......|.+.|+++. .++++.. +.. +. +++.+.++.+...+ +.|+++++
T Consensus 2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia 78 (326)
T PRK14620 2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA 78 (326)
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence 4667799 9999999999999898854 4444220 001 11 23355566665421 58999999
Q ss_pred cChhhHHHHHHHHHH-c-C-CcEEEEecCCCCh
Q 019500 107 VPPPFAAAAILEAME-A-E-LDLVVCITEGIPQ 136 (340)
Q Consensus 107 vp~~~v~~~v~ea~~-~-G-vk~vvi~t~Gf~e 136 (340)
+|+..+.+++++... . + -..+++++.|+..
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999999998876 3 2 2246778899955
No 100
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.54 E-value=0.018 Score=56.94 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=69.1
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCcee---cCccc----ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTEH---LGLPV----FNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~i---~G~p~----y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
|.|+|. |.||..+++.|.+.|++ .++..+|+. .+. .+..+ ..++.++.. +.|++++++|+....+++
T Consensus 3 I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~aDlVilavP~~~~~~vl 77 (359)
T PRK06545 3 VLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSA--AQLARALGFGVIDELAADLQRAAA--EADLIVLAVPVDATAALL 77 (359)
T ss_pred EEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCH--HHHHHHhcCCCCcccccCHHHHhc--CCCEEEEeCCHHHHHHHH
Confidence 566799 99999999999999986 455667654 221 12222 245666654 589999999999999999
Q ss_pred HHHHHc--CCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 117 LEAMEA--ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 117 ~ea~~~--Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
++.... .-+.++.-.++....-.+.+.+. ...+.+++|-.
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~--~~~~~~~ig~H 119 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVKGAILAEAEAL--LGDLIRFVGGH 119 (359)
T ss_pred HHHhhcCCCCCcEEEeCccccHHHHHHHHHh--cCCCCeEEeeC
Confidence 888752 22344433455554434444332 23466777743
No 101
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.54 E-value=0.023 Score=56.17 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=75.9
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHH-cCCe---EEEeeCCCCCCcee--cC--ccccc-CHHHhhccCCCcEEEEecChh
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTK---MVGGVTPKKGGTEH--LG--LPVFN-TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~---vv~~VnP~~~g~~i--~G--~p~y~-sl~dip~~~~vDlavi~vp~~ 110 (340)
+++++|.|+||||-.|+...+.|.+ ..|+ +......+..|+.+ .| +.+.+ +.+++ . ++|+++.++|.+
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~ 79 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE 79 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence 4567888999999999999999985 4665 44455565555543 22 22222 33344 2 599999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHHhccCCcEEEccCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~aar~~girviGPNc~G 161 (340)
...+.+.++.++|++. |-.++-|..+ ..+.+. ...+ .|-.|||.=
T Consensus 80 ~s~~~~~~~~~~G~~V-ID~Ss~fR~~~~vplvvPEvN~e~i~----~~~~-iIanPnC~t 134 (347)
T PRK06728 80 VSRQFVNQAVSSGAIV-IDNTSEYRMAHDVPLVVPEVNAHTLK----EHKG-IIAVPNCSA 134 (347)
T ss_pred HHHHHHHHHHHCCCEE-EECchhhcCCCCCCeEeCCcCHHHHh----ccCC-EEECCCCHH
Confidence 9999999999999754 5567666422 122222 2235 588899964
No 102
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.026 Score=55.28 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=73.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC--eEEEe-eCCCCCCce---ecC--cccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT--KMVGG-VTPKKGGTE---HLG--LPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~--~vv~~-VnP~~~g~~---i~G--~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
.+|.|+|++|..|+..++.|.+..| ..+.+ -.++..|++ ..| +++-.+..+.....++|+++.+.+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 4677789999999999999998544 32323 334433443 222 233333334433336999999999999999
Q ss_pred HHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHHhccCCcEEEccCCCC
Q 019500 115 AILEAMEAELDLVVCITEGIPQH----------DMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~aar~~girviGPNc~G 161 (340)
...++.+.|+-. |--++-|.-+ -...+.+. ++.|.-+.+|||.-
T Consensus 82 ~~p~~~~~G~~V-IdnsSa~Rm~~DVPLVVPeVN~~~l~~~--~~rg~IianpNCst 135 (334)
T COG0136 82 VEPKAAEAGCVV-IDNSSAFRMDPDVPLVVPEVNPEHLIDY--QKRGFIIANPNCST 135 (334)
T ss_pred HHHHHHHcCCEE-EeCCcccccCCCCCEecCCcCHHHHHhh--hhCCCEEECCChHH
Confidence 999999999432 3334444321 13345443 23456788999954
No 103
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.48 E-value=0.019 Score=57.40 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=62.4
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceec-------C--cccccCHHHhhccCCCcEEEEecCh
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHL-------G--LPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~-------G--~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
++..+|.|+||||..|..+.+.|.++ .+++......+..|+.+. + .+.+.+++...- .++|+++.++|.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCH
Confidence 45668888899999999999999887 677665555433333321 1 111222222100 258999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
+...+.+... +.|.+ +|-+++.|.
T Consensus 115 ~~s~~i~~~~-~~g~~-VIDlSs~fR 138 (381)
T PLN02968 115 GTTQEIIKAL-PKDLK-IVDLSADFR 138 (381)
T ss_pred HHHHHHHHHH-hCCCE-EEEcCchhc
Confidence 9999999885 77865 466777664
No 104
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.43 E-value=0.017 Score=54.66 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=58.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc---eecCcc-cccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT---EHLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~---~i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
+|.|+|. |.||..+++.|.+.|+. .++.+|++.... .-.|.. .+.+..++.+ .|++++++|+..+.+++++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aD~Vilavp~~~~~~~~~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKK---CDVIFLAIPVDAIIEILPK 77 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhc---CCEEEEeCcHHHHHHHHHH
Confidence 4677798 99999999999988863 344677654100 113432 3456777643 8999999999999999988
Q ss_pred HHHcCCcEEEEecCCCC
Q 019500 119 AMEAELDLVVCITEGIP 135 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~ 135 (340)
.....-.. +++..|-.
T Consensus 78 l~~l~~~~-iv~d~gs~ 93 (275)
T PRK08507 78 LLDIKENT-TIIDLGST 93 (275)
T ss_pred HhccCCCC-EEEECccc
Confidence 76522233 33455544
No 105
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.40 E-value=0.026 Score=55.66 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=75.7
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCc-ccccCH--HHhhccCCCcEEEEecChh
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGL-PVFNTV--AEAKAETKANASAIYVPPP 110 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~-p~y~sl--~dip~~~~vDlavi~vp~~ 110 (340)
..+..+|.|+|+||..|..+++.|.+.++ ++.+....+..|+.+ .|. ..+.++ +++ . ++|+++.++|.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~-~--~~D~vf~a~p~~ 80 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSF-D--GVDIALFSAGGS 80 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHH-c--CCCEEEECCCcH
Confidence 34567888889999999999999988544 344344444334433 221 122222 233 2 599999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChh----------hHHHHHHHH-hccCCcEEEccCCCCc
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQH----------DMVRVKAAL-NNQSKTRLVGPNCPGV 162 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~----------~~~~l~~~a-ar~~girviGPNc~Gi 162 (340)
...+.+.++.++|++. |-.++-|.-+ ..+.+...- .++.+-.|-.|||.=.
T Consensus 81 ~s~~~~~~~~~~g~~V-IDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t 142 (344)
T PLN02383 81 ISKKFGPIAVDKGAVV-VDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTI 142 (344)
T ss_pred HHHHHHHHHHhCCCEE-EECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHH
Confidence 9999999999999864 6677666322 123333210 0122347889999643
No 106
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.40 E-value=0.012 Score=57.82 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=64.9
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCcc-ccc--CHHHhhccCCCcEEEEecChhh
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFN--TVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~p-~y~--sl~dip~~~~vDlavi~vp~~~ 111 (340)
+++++|.|+||||..|..+++.|.+.++ ++.+..+.+..|+.+ .|.. .+. +..++ . ++|++++++|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence 3457888899999999999999996443 355556665545433 2210 111 12223 2 5999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCC
Q 019500 112 AAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
..+.+.++.++|++. |-.++.|.
T Consensus 79 s~~~v~~~~~~G~~V-IDlS~~fR 101 (336)
T PRK05671 79 SRSFAEKARAAGCSV-IDLSGALP 101 (336)
T ss_pred HHHHHHHHHHCCCeE-EECchhhc
Confidence 999999999999874 67787774
No 107
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=96.37 E-value=0.027 Score=49.62 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=60.5
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC--CCCceecCcccccCHHHhhcc-CCCcEEEEecC-hhhHHHHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAKAE-TKANASAIYVP-PPFAAAAILEAM 120 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip~~-~~vDlavi~vp-~~~v~~~v~ea~ 120 (340)
++|+|+ +..|+.+++.|++.||++++.++.+ ..++.+.|+|+|.+.+++..- .+.+.++++++ +....++++.+.
T Consensus 2 ~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 2 LVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHHH
Confidence 678899 8899999999988899988777643 234678999999887776532 13578888885 455566677777
Q ss_pred HcCCcEE
Q 019500 121 EAELDLV 127 (340)
Q Consensus 121 ~~Gvk~v 127 (340)
+.+++..
T Consensus 81 ~~g~~~~ 87 (201)
T TIGR03570 81 AKGYRFA 87 (201)
T ss_pred hCCCcce
Confidence 7776553
No 108
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.02 Score=56.23 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=63.7
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccC-------------HHHhhccCCCcEEEEec
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNT-------------VAEAKAETKANASAIYV 107 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~s-------------l~dip~~~~vDlavi~v 107 (340)
+++|.|+|+||-.|-.+.+.|.++ ..++......++.|+.+.. .|++ .+++ +..++|++++++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~--~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSD--VHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHH--hCcccccccccccccCChhhh-hcccCCEEEEec
Confidence 578899999999999999999886 4564433333323333321 1222 2333 222489999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 108 PPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
|.....+.+.+..+.|++ ||-+++.|.
T Consensus 79 Phg~s~~~v~~l~~~g~~-VIDLSadfR 105 (349)
T COG0002 79 PHGVSAELVPELLEAGCK-VIDLSADFR 105 (349)
T ss_pred CchhHHHHHHHHHhCCCe-EEECCcccc
Confidence 999999999999999999 577887764
No 109
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.33 E-value=0.025 Score=56.26 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCcchHHHHHHH-HcCCe---EEEeeCCCCCCcee---cC--ccccc--CHHHhhccCCCcEEEEecChhh
Q 019500 43 TRVICQGITGKNGTFHTEQAI-EYGTK---MVGGVTPKKGGTEH---LG--LPVFN--TVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~-~~G~~---vv~~VnP~~~g~~i---~G--~p~y~--sl~dip~~~~vDlavi~vp~~~ 111 (340)
++|+|+||||-.|+.+.+.++ +..+. ++. +.....|+.. .| ..++. +.+++ . ++|+++.+.|.+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence 467788999999999998444 45665 554 4332222222 23 22332 23333 2 5999999999999
Q ss_pred HHHHHHHHHHcCCcE-EEEecCCCChh----------hHHHHHHHHhccCCc-EEEccCCCCc
Q 019500 112 AAAAILEAMEAELDL-VVCITEGIPQH----------DMVRVKAALNNQSKT-RLVGPNCPGV 162 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~-vvi~t~Gf~e~----------~~~~l~~~aar~~gi-rviGPNc~Gi 162 (340)
..+...++.++|++. +|-.++-|.-+ ..+.+... .+.|+ .+..|||.=.
T Consensus 78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~--~~~g~~iIanPnC~tt 138 (369)
T PRK06598 78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDA--LANGVKTFVGGNCTVS 138 (369)
T ss_pred HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhh--hhcCCCEEEcCChHHH
Confidence 999999999999873 45555545322 12333321 24565 5779999643
No 110
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.29 E-value=0.086 Score=52.91 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=84.1
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI 257 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~ 257 (340)
..|+|++++-.++++.+.+|.....|....-++-+|..+ ..-.+.+.++.+.+||++++|++.+-+.-+. ..-+..+.
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 569999999999999999999999998777788777654 3566789999999999999999765421111 12223333
Q ss_pred HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCC--eecCCHHHHHHHHHH
Q 019500 258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGV--TVVESPAKIGAAMLE 331 (340)
Q Consensus 258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGv--v~v~~~~el~~~~~~ 331 (340)
++.+ .+|||++.-.| ...+.....|+++|+ ...+|++|-...+-+
T Consensus 334 ~a~~~~~~~kPvvv~l~G-----------------------------~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~ 383 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAG-----------------------------TNVEEGRKILAESGLPIITADTLAEAAEKAVE 383 (392)
T ss_pred HHHHhcCCCCcEEEEcCC-----------------------------CCHHHHHHHHHHcCCCeeecCCHHHHHHHHHH
Confidence 3333 47899664433 123345677888895 555666655544443
No 111
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.25 E-value=0.019 Score=54.62 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=57.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecC-cccc-cCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLG-LPVF-NTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G-~p~y-~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
+|.|+|. |.||..++..|.+.|+++. .++++... +. -.| +... .+.+ ... +.|++++++|+..+.+++++
T Consensus 2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~-~~~--~aDlVilavp~~~~~~~~~~ 76 (279)
T PRK07417 2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLS-LLK--DCDLVILALPIGLLLPPSEQ 76 (279)
T ss_pred eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHh-Hhc--CCCEEEEcCCHHHHHHHHHH
Confidence 4677798 9999999999999998754 66665310 11 122 2223 2343 333 58999999999999999888
Q ss_pred HHHc-CCcEEEEecCCCChh
Q 019500 119 AMEA-ELDLVVCITEGIPQH 137 (340)
Q Consensus 119 a~~~-Gvk~vvi~t~Gf~e~ 137 (340)
.... .-+.+|.-+++....
T Consensus 77 l~~~l~~~~ii~d~~Svk~~ 96 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAP 96 (279)
T ss_pred HHHhCCCCcEEEeCcchHHH
Confidence 7764 333444334455433
No 112
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.25 E-value=0.031 Score=57.43 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=71.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee------cC--cccccCHHHhhcc-CCCcEEEEecCh-hhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH------LG--LPVFNTVAEAKAE-TKANASAIYVPP-PFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i------~G--~p~y~sl~dip~~-~~vDlavi~vp~-~~v 112 (340)
+|.|+|. |.||..++++|.+.|+++. ..|.+... +++ .| +..+.+++|+.+. .++|++++++|+ +.+
T Consensus 3 ~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 3 DIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred EEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 4667799 9999999999999999844 55654310 111 14 3367899998752 148988888665 566
Q ss_pred HHHHHHHHHcCC--cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 113 AAAILEAMEAEL--DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 113 ~~~v~ea~~~Gv--k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
.+++++....-- +.+|..++++.+...+ +.+.+ ++.|+++++---.|
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~-r~~~l-~~~Gi~fldapVSG 129 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTER-RIKRC-EEKGILYLGMGVSG 129 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHH-HHHHH-HHcCCeEEcCCCCC
Confidence 667666554311 3344444555444333 33444 57899988755555
No 113
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.22 E-value=0.0077 Score=59.66 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=63.3
Q ss_pred EEEeCCCCCcchHHHHHHHHcC-C-e-EEEeeCCCCC--------Ccee----cCcccccCHHHhhccCCCcEEEEecCh
Q 019500 45 VICQGITGKNGTFHTEQAIEYG-T-K-MVGGVTPKKG--------GTEH----LGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G-~-~-vv~~VnP~~~--------g~~i----~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
|+|+|+ |.+|+.+++.|.+.+ + + +++.-|+... +..+ ..+.-..+|.++.. +.|++|-++|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 567899 999999999999864 5 4 3333343320 0011 11122234666665 57999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
.....+++.|++.|++.+ - +.+-.+...++.+.+ +++|+.++
T Consensus 78 ~~~~~v~~~~i~~g~~yv-D--~~~~~~~~~~l~~~a-~~~g~~~l 119 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYV-D--TSYVTEEMLALDEEA-KEAGVTAL 119 (386)
T ss_dssp GGHHHHHHHHHHHT-EEE-E--SS-HHHHHHHCHHHH-HHTTSEEE
T ss_pred chhHHHHHHHHHhCCCee-c--cchhHHHHHHHHHHH-HhhCCEEE
Confidence 999999999999999973 2 333233344455554 56777765
No 114
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.20 E-value=0.019 Score=52.32 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=59.2
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--Cce--ecCccc----ccCHHHhhcc-CCCcEEEEecC------h
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTE--HLGLPV----FNTVAEAKAE-TKANASAIYVP------P 109 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~--i~G~p~----y~sl~dip~~-~~vDlavi~vp------~ 109 (340)
|+|+|++|+.|+.+++.|.+.++++.+.+.+... -++ -.|..+ |.+.+++.+. .++|.+++++| .
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 4677999999999999999999988777775320 001 123221 3344444322 37999999999 4
Q ss_pred hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+....+++.|.+.||+.++ +++
T Consensus 81 ~~~~~li~Aa~~agVk~~v-~ss 102 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFV-PSS 102 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEE-ESE
T ss_pred hhhhhHHHhhhccccceEE-EEE
Confidence 5677889999999999976 553
No 115
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.19 E-value=0.022 Score=52.19 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=59.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--------e--cCc--ccc-cCHHHhhccCCCcEEEEecCh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--------H--LGL--PVF-NTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--------i--~G~--p~y-~sl~dip~~~~vDlavi~vp~ 109 (340)
+|.|+|.+|++|+.+.+.|.+.|++++ ..+++... +. + .|+ .+. .+..+..+ ..|++++++|+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~--~aDvVilavp~ 78 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAK--RADVVILAVPW 78 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHh--cCCEEEEECCH
Confidence 577788669999999999999998854 34443210 00 0 121 111 24455554 48999999999
Q ss_pred hhHHHHHHHHHHc-CCcEEEEecCCCCh
Q 019500 110 PFAAAAILEAMEA-ELDLVVCITEGIPQ 136 (340)
Q Consensus 110 ~~v~~~v~ea~~~-Gvk~vvi~t~Gf~e 136 (340)
....+++++.... .-+.++-++.|+..
T Consensus 79 ~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 79 DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 9999998877542 22566667778754
No 116
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.13 E-value=0.013 Score=53.38 Aligned_cols=51 Identities=24% Similarity=0.143 Sum_probs=43.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~ 120 (340)
+|.|+|.+|+||+...+.+.+.|+.+. +. +.|++++|+|.....+++++..
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~~---~~DlVilavPv~~~~~~i~~~~ 52 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------IK---KADHAFLSVPIDAALNYIESYD 52 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------EC---CCCEEEEeCCHHHHHHHHHHhC
Confidence 577889999999999999999998753 12 4899999999999999998864
No 117
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.12 E-value=0.028 Score=55.39 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=62.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEe-eCCCCCCceec---Ccccc--------------cCHHHhhccCCCcE
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGG-VTPKKGGTEHL---GLPVF--------------NTVAEAKAETKANA 102 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~-VnP~~~g~~i~---G~p~y--------------~sl~dip~~~~vDl 102 (340)
+++|+|+|++|.+|+.+++.|.++. ++++.. .++...|+.+. +...| .+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 4678888999999999999988864 466654 44443333332 11111 023333 2 5899
Q ss_pred EEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 103 SAIYVPPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 103 avi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
++.++|.....+.++++.+.|++. |..++-|.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~v-IDls~~fR 111 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPV-FSNASAHR 111 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEE-EECCchhc
Confidence 999999999999999998999986 55666553
No 118
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.09 E-value=0.03 Score=54.84 Aligned_cols=91 Identities=14% Similarity=0.062 Sum_probs=61.7
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC---eEEEeeCCCCCCcee--cCcc-cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT---KMVGGVTPKKGGTEH--LGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~---~vv~~VnP~~~g~~i--~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
++|.|+|+||..|..+++.|.+.++ ++.+....+..|+.+ .|.. .+.++++..- .++|+++.++|.....+.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHHH
Confidence 5788889999999999999998654 456555554444443 2221 2222222111 1599999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCC
Q 019500 117 LEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf~ 135 (340)
.++.++|+ .+|-+++.|.
T Consensus 81 ~~~~~~G~-~VIDlS~~~R 98 (334)
T PRK14874 81 PKAAAAGA-VVIDNSSAFR 98 (334)
T ss_pred HHHHhCCC-EEEECCchhh
Confidence 99999998 3444566553
No 119
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.08 E-value=0.035 Score=54.06 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=60.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~ 120 (340)
+++|.|+||||-.|..+.+.|.++. +++++...-.. ..+ ...++... ++|+++.++|.....+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 4577888999999999999998874 45664433222 222 22233333 5899999999999999999999
Q ss_pred HcCCcEEEEecCCCC
Q 019500 121 EAELDLVVCITEGIP 135 (340)
Q Consensus 121 ~~Gvk~vvi~t~Gf~ 135 (340)
+.|++. |-+++.|.
T Consensus 72 ~~g~~V-IDlSadfR 85 (313)
T PRK11863 72 NPATRV-IDASTAHR 85 (313)
T ss_pred hCCCEE-EECChhhh
Confidence 999874 66777664
No 120
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.97 E-value=0.043 Score=47.73 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=52.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC--------ceecCc-------------------ccc--cCHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG--------TEHLGL-------------------PVF--NTVA 92 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g--------~~i~G~-------------------p~y--~sl~ 92 (340)
++|+|+|+ |+||+.+.+.+.+ .++++++..+|.... +...|. +++ .+.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 46788899 9999999998775 477777655541100 112221 111 2344
Q ss_pred Hhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500 93 EAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (340)
Q Consensus 93 dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi 129 (340)
++| .+..+|+++.|+..-...+..+.-++.|+|.+++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 444 2235788888866656666666677778888653
No 121
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.95 E-value=0.056 Score=58.18 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=69.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce---ecCcc--cccCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE---HLGLP--VFNTVAEAKAETKANASAIYVPPPFAAAAIL 117 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~---i~G~p--~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ 117 (340)
+|.|+|+ |++|..+++.+.+.|+ ..+..+|++....+ -.|.. ...++.+..+ +.|++++++|+..+.++++
T Consensus 5 ~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~--~aDvVilavp~~~~~~vl~ 81 (735)
T PRK14806 5 RVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVS--GADVIVLAVPVLAMEKVLA 81 (735)
T ss_pred EEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhc--CCCEEEECCCHHHHHHHHH
Confidence 4667798 9999999999999885 23446777641111 13432 3345666665 5899999999999999988
Q ss_pred HHHHc-CCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 118 EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 118 ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
+..+. .-+.+++..++....-.+.+.+.. ....+|++
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~-~~~~~r~~ 119 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVF-GELPAGFV 119 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhc-cccCCeEE
Confidence 87653 223445445666544444454443 23356776
No 122
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.94 E-value=0.022 Score=54.46 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=57.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--------------------------ecC-cccccCHHHhhc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--------------------------HLG-LPVFNTVAEAKA 96 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--------------------------i~G-~p~y~sl~dip~ 96 (340)
+|.|+|+ |.||..++..+...|++++ .+|++....+ ..+ +.+..+.+++ +
T Consensus 6 ~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 82 (295)
T PLN02545 6 KVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL-R 82 (295)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh-C
Confidence 4677799 9999999999999999855 5665431000 011 2233455544 3
Q ss_pred cCCCcEEEEecC--hhhHHHHHHHHHHcC-CcEEEE-ecCCCChhhH
Q 019500 97 ETKANASAIYVP--PPFAAAAILEAMEAE-LDLVVC-ITEGIPQHDM 139 (340)
Q Consensus 97 ~~~vDlavi~vp--~~~v~~~v~ea~~~G-vk~vvi-~t~Gf~e~~~ 139 (340)
+.|+++.++| ++.-..++.+..+.- -+.+++ -|++++..+.
T Consensus 83 --~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l 127 (295)
T PLN02545 83 --DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRL 127 (295)
T ss_pred --CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 5899999999 666666666655432 223443 5778865543
No 123
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.91 E-value=0.043 Score=55.06 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=60.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-cccccCHHHhhccCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---------------------LG-LPVFNTVAEAKAETKA 100 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---------------------~G-~p~y~sl~dip~~~~v 100 (340)
+|.|+|. |.+|...+..|.+.|++++ .+|++... +.+ .| +....+++++.. +.
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~--~a 77 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR--DA 77 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh--hC
Confidence 4677799 9999999999999999855 55543310 000 13 444556777554 58
Q ss_pred cEEEEecChhh----------HHHHHHHHHHc-CCcEEEEecCCCChhhHHHHH
Q 019500 101 NASAIYVPPPF----------AAAAILEAMEA-ELDLVVCITEGIPQHDMVRVK 143 (340)
Q Consensus 101 Dlavi~vp~~~----------v~~~v~ea~~~-Gvk~vvi~t~Gf~e~~~~~l~ 143 (340)
|++++++|... +.++++...+. .-+.+|+..+.++....+++.
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 99999999653 55555555442 223456667776655444443
No 124
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.86 E-value=0.11 Score=51.92 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~ 121 (340)
-+|.|+|.+|.||....+.|.+. +++++ ++++.. + ...++++... +.|++++|+|.....+++++...
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~--~aDlVilavPv~~~~~~l~~l~~ 73 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQ--RADVLIFSAPIRHTAALIEEYVA 73 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhc--CCCEEEEeCCHHHHHHHHHHHhh
Confidence 35677799999999999999874 77755 788753 1 1224555554 58999999999999999999987
Q ss_pred c
Q 019500 122 A 122 (340)
Q Consensus 122 ~ 122 (340)
.
T Consensus 74 ~ 74 (370)
T PRK08818 74 L 74 (370)
T ss_pred h
Confidence 4
No 125
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.83 E-value=0.055 Score=53.00 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred EEEEeCCCCCcchHHHHHHHH------c--CCeEEEeeCCCC-----CCcee---------cCcccc--c--CHHHhhcc
Q 019500 44 RVICQGITGKNGTFHTEQAIE------Y--GTKMVGGVTPKK-----GGTEH---------LGLPVF--N--TVAEAKAE 97 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~------~--G~~vv~~VnP~~-----~g~~i---------~G~p~y--~--sl~dip~~ 97 (340)
+|+|+|+ |+.|+.+++.|.+ + ++++++..|.+. .|-.+ ..+..| + ++.++.+.
T Consensus 2 rVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 2 RISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred EEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 6788899 9999999998776 2 456776544331 00000 012223 2 56777653
Q ss_pred CCCcEEEEecChh----hHHHHHHHHHHcCCcEEEEecC-C-CChhhHHHHHHHHhccCCcEEE
Q 019500 98 TKANASAIYVPPP----FAAAAILEAMEAELDLVVCITE-G-IPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 98 ~~vDlavi~vp~~----~v~~~v~ea~~~Gvk~vvi~t~-G-f~e~~~~~l~~~aar~~girvi 155 (340)
++|++|.++|.. ...+.+++++++|++.+. +. | ++ ....++.+.+ +++|.++.
T Consensus 81 -~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT--aNKgalA-~~~~eL~~lA-~~~g~~~~ 139 (326)
T PRK06392 81 -KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT--ANKSGLA-NHWHDIMDSA-SKNRRIIR 139 (326)
T ss_pred -CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc--CCHHHHH-hhHHHHHHHH-HHcCCeEE
Confidence 689999999742 256778999999998632 32 2 22 2345666665 77777765
No 126
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.83 E-value=0.038 Score=54.32 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=66.1
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHH--cC-CeEEEeeCCCCCCcee--cC--cccccCHHHhhccCCCcEEEEecChhhH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIE--YG-TKMVGGVTPKKGGTEH--LG--LPVFNTVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~--~G-~~vv~~VnP~~~g~~i--~G--~p~y~sl~dip~~~~vDlavi~vp~~~v 112 (340)
.+.++|+|+||||-.|....+.|.+ +. +++......+..|+.+ .| +++. ++++..- .++|+++.++|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~-~~~Dvvf~a~p~~~s 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDW-SQAQLAFFVAGREAS 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhc-cCCCEEEECCCHHHH
Confidence 3567888889999999999999998 43 3555444444445544 22 2222 4444421 158999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCC
Q 019500 113 AAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
.+.+.++.++|++. |-.++.|.
T Consensus 80 ~~~~~~~~~~g~~V-IDlS~~fR 101 (336)
T PRK08040 80 AAYAEEATNAGCLV-IDSSGLFA 101 (336)
T ss_pred HHHHHHHHHCCCEE-EECChHhc
Confidence 99999999999974 66777664
No 127
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.79 E-value=0.03 Score=55.02 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=59.1
Q ss_pred EEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC--------------------c--eecCcccccCHHHhhccCCCcE
Q 019500 46 ICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG--------------------T--EHLGLPVFNTVAEAKAETKANA 102 (340)
Q Consensus 46 iVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g--------------------~--~i~G~p~y~sl~dip~~~~vDl 102 (340)
.|+|. |++|+.+++.+.+. +.++++..++.... . +-.|++++.+++++++ ++|+
T Consensus 2 aInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vDi 78 (333)
T TIGR01546 2 GVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVDI 78 (333)
T ss_pred EEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCCE
Confidence 45688 88888888877653 56777544332200 0 0124666778999986 5999
Q ss_pred EEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500 103 SAIYVPPPFAAAAILEAMEAELDLVVC 129 (340)
Q Consensus 103 avi~vp~~~v~~~v~ea~~~Gvk~vvi 129 (340)
++.++|........+...+.|.|.+++
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEE
Confidence 999999999999999999999999654
No 128
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.76 E-value=0.033 Score=54.66 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=60.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeC-CCCCCceec---Ccccc-------c-----CHHHhhccCCCcEEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVT-PKKGGTEHL---GLPVF-------N-----TVAEAKAETKANASAI 105 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G-~~vv~~Vn-P~~~g~~i~---G~p~y-------~-----sl~dip~~~~vDlavi 105 (340)
++|+|+|++|.+|+.+.+.+.+.. +++++.+. ....|+.+. ....| . ++++-.. .++|+++.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS-KDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh-ccCCEEEE
Confidence 367788999999999999888865 67776643 322233322 11111 1 1111111 26999999
Q ss_pred ecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 106 YVPPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
++|.....+..+++.+.|++. |..++-|.
T Consensus 80 a~p~~~s~~~~~~~~~~G~~V-IDlsg~fR 108 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPV-FSNASNHR 108 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEE-EECChhhc
Confidence 999999999999999999985 55666553
No 129
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.083 Score=50.67 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=58.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeE-EEeeCCCCCCc---eecCcc-cc-cCH-HHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGT---EHLGLP-VF-NTV-AEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~v-v~~VnP~~~g~---~i~G~p-~y-~sl-~dip~~~~vDlavi~vp~~~v~~ 114 (340)
..+|+|+|. |.||+..++.+.+.|+.+ +++.++..... .-.|+. .+ .+. .+... ..|++|++||.....+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 456888897 999999999999999874 67888765211 113332 22 222 22221 4799999999999999
Q ss_pred HHHHHHH-cCCcEEE
Q 019500 115 AILEAME-AELDLVV 128 (340)
Q Consensus 115 ~v~ea~~-~Gvk~vv 128 (340)
++++... .....+|
T Consensus 80 ~l~~l~~~l~~g~iv 94 (279)
T COG0287 80 VLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHhcccCCCCCEE
Confidence 9999985 3444444
No 130
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.087 Score=50.19 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=77.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC-C--eEEEeeCCCCCCc----eecCcccccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG-T--KMVGGVTPKKGGT----EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G-~--~vv~~VnP~~~g~----~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
+|.++|+ |+||+.++..|++.| + ..+...||+.... +-+|+....+-.++.+ +.|++++++.|....+++
T Consensus 3 ~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~--~advv~LavKPq~~~~vl 79 (266)
T COG0345 3 KIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE--EADVVFLAVKPQDLEEVL 79 (266)
T ss_pred eEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHh--hCCEEEEEeChHhHHHHH
Confidence 5667799 999999999999987 3 2454788876211 1345555666666665 489999999999999999
Q ss_pred HHHHH-cCCcEEEEecCCCChhhHHHHHHHHhccCC-cEEEccCCCCccc
Q 019500 117 LEAME-AELDLVVCITEGIPQHDMVRVKAALNNQSK-TRLVGPNCPGVIK 164 (340)
Q Consensus 117 ~ea~~-~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g-irviGPNc~Gi~~ 164 (340)
.++.. ..=+.+|=+..|.+-+.++ ++. -... +|++ ||..-.+.
T Consensus 80 ~~l~~~~~~~lvISiaAGv~~~~l~---~~l-~~~~vvR~M-PNt~a~vg 124 (266)
T COG0345 80 SKLKPLTKDKLVISIAAGVSIETLE---RLL-GGLRVVRVM-PNTPALVG 124 (266)
T ss_pred HHhhcccCCCEEEEEeCCCCHHHHH---HHc-CCCceEEeC-CChHHHHc
Confidence 99874 2334567678899755544 333 2233 4555 99654443
No 131
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.67 E-value=0.052 Score=53.97 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=69.8
Q ss_pred EEEEeCCCCCcchHHHHHHH-HcCCe--EEEeeCC-CCCCce--ecCcc-cccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAI-EYGTK--MVGGVTP-KKGGTE--HLGLP-VFNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~-~~G~~--vv~~VnP-~~~g~~--i~G~p-~y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
+|+|+||+|-.|+...+.|. +..|. .+.++.. +.+|+. ..|.+ ...++++...-.++|+++.+.+.+...+..
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~~ 81 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEIY 81 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHHH
Confidence 46677999999999999888 44554 2224443 333332 22222 111232210112599999999999999999
Q ss_pred HHHHHcCCcEEEE-ecCCCChh----------hHHHHHHHHhccCCcE-EEccCCCCc
Q 019500 117 LEAMEAELDLVVC-ITEGIPQH----------DMVRVKAALNNQSKTR-LVGPNCPGV 162 (340)
Q Consensus 117 ~ea~~~Gvk~vvi-~t~Gf~e~----------~~~~l~~~aar~~gir-viGPNc~Gi 162 (340)
..+.++|.+.+|| -++-|.-+ .-+.+.+. ++.|+. +..|||.-+
T Consensus 82 p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~--~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 82 PKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG--LNNGIRTFVGGNCTVS 137 (366)
T ss_pred HHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH--HhCCcCeEECcCHHHH
Confidence 9999999865443 33334211 12223221 246775 788999543
No 132
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.044 Score=51.96 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=54.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee----------------c-------------CcccccCHHHh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH----------------L-------------GLPVFNTVAEA 94 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i----------------~-------------G~p~y~sl~di 94 (340)
+|.|+|+ |.||..++..+.+.|++++ .+|++. +.+ . ++....+++++
T Consensus 5 kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~--~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 80 (282)
T PRK05808 5 KIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISD--AAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL 80 (282)
T ss_pred EEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 5677799 9999999999999999855 445432 111 1 23334566654
Q ss_pred hccCCCcEEEEecChhhH--HHHHHHHHHcC-CcEEE-EecCCCChhh
Q 019500 95 KAETKANASAIYVPPPFA--AAAILEAMEAE-LDLVV-CITEGIPQHD 138 (340)
Q Consensus 95 p~~~~vDlavi~vp~~~v--~~~v~ea~~~G-vk~vv-i~t~Gf~e~~ 138 (340)
. +.|++++++|++.. .+++++..+.- -..++ -.|+|++.++
T Consensus 81 ~---~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~ 125 (282)
T PRK05808 81 K---DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282)
T ss_pred c---cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 3 58999999987555 56666655432 22333 3345665443
No 133
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.58 E-value=0.055 Score=51.98 Aligned_cols=113 Identities=16% Similarity=0.313 Sum_probs=68.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCccc--ccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPV--FNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
..+|+|+|+ |++|+.+++.+..+|.++. .+|++. +.. .|... +.++.+... +.|+++.++|......
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~--~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSS--ADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCChHHhCH
Confidence 346778899 9999999999999999754 667654 221 23332 234555554 5899999999765433
Q ss_pred HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEE-EccCCCCcccCC
Q 019500 115 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL-VGPNCPGVIKPG 166 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girv-iGPNc~Gi~~p~ 166 (340)
..-+..+.+ ..++.+++.=...+. +.+ ++.|++. +-|+-.|.+.|.
T Consensus 225 ~~l~~~k~~-aliIDlas~Pg~tdf----~~A-k~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 225 DVLSKLPKH-AVIIDLASKPGGTDF----EYA-KKRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred HHHhcCCCC-eEEEEeCcCCCCCCH----HHH-HHCCCEEEEeCCCCcccCch
Confidence 222233332 233444443223344 222 6788774 457777777664
No 134
>PLN02858 fructose-bisphosphate aldolase
Probab=95.57 E-value=0.063 Score=61.82 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccccCHHHhhccCCCcEEEEecC-hhhHHHHHH-
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVFNTVAEAKAETKANASAIYVP-PPFAAAAIL- 117 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y~sl~dip~~~~vDlavi~vp-~~~v~~~v~- 117 (340)
.+|.++|. |+||..++++|.+.|+++. ..|+.... +. -.|.....+..++.+ ..|++++++| ++.+.+++.
T Consensus 325 ~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~--~aDvVi~~V~~~~~v~~Vl~g 400 (1378)
T PLN02858 325 KRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAK--DVDVLVIMVANEVQAENVLFG 400 (1378)
T ss_pred CeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEecCChHHHHHHHhc
Confidence 45677799 9999999999999999854 55654310 11 135556778888876 5899999999 666666652
Q ss_pred --HHHHc-CCcEEEEecCCCChhhHHHHHHHHhcc--CCcEEE-ccCCCC
Q 019500 118 --EAMEA-ELDLVVCITEGIPQHDMVRVKAALNNQ--SKTRLV-GPNCPG 161 (340)
Q Consensus 118 --ea~~~-Gvk~vvi~t~Gf~e~~~~~l~~~aar~--~girvi-GPNc~G 161 (340)
.+++. ....+||-.+-.+....+++.+.+ ++ .|++++ .|=+-|
T Consensus 401 ~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l-~~~g~g~~~lDAPVsGg 449 (1378)
T PLN02858 401 DLGAVSALPAGASIVLSSTVSPGFVIQLERRL-ENEGRDIKLVDAPVSGG 449 (1378)
T ss_pred hhhHHhcCCCCCEEEECCCCCHHHHHHHHHHH-HhhCCCcEEEEccCCCC
Confidence 23332 122344445545555566666655 45 777765 454333
No 135
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=95.52 E-value=0.061 Score=54.42 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=63.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCC-CceecCcccccCHHHhhc---cCCCcEEEEecChhh---H
Q 019500 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAKA---ETKANASAIYVPPPF---A 112 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~-g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~~~---v 112 (340)
.+++|+|+ +..+..+.+.+.+ .||++++.++++.. +..+.|+|++.+++++++ ++++|-++++.|... .
T Consensus 126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~~~ 204 (445)
T TIGR03025 126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI 204 (445)
T ss_pred CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHHHH
Confidence 35788899 7778888888765 37888877775432 246789999988776653 457999999988644 4
Q ss_pred HHHHHHHHHcCCcEEE
Q 019500 113 AAAILEAMEAELDLVV 128 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vv 128 (340)
.+.+++|.+.|++..+
T Consensus 205 ~~ll~~~~~~gv~V~~ 220 (445)
T TIGR03025 205 LELLLQLRDLGVDVRL 220 (445)
T ss_pred HHHHHHHHhcCCEEEE
Confidence 5788999999998644
No 136
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=95.50 E-value=0.067 Score=54.22 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=62.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCC--CCCceecCcccccCHHHhhc---cCCCcEEEEecChh---h
Q 019500 43 TRVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAKA---ETKANASAIYVPPP---F 111 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~~---~ 111 (340)
.+|+|+|+ +..|..+.+.+.+ .||++++.++.+ ..+.. .|+|++.+++++++ ++++|.++++.|.. .
T Consensus 129 ~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~~ 206 (451)
T TIGR03023 129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAEDR 206 (451)
T ss_pred CcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHHH
Confidence 35788899 7778888888765 378888777643 22234 89999988776653 46799999999874 4
Q ss_pred HHHHHHHHHHcCCcEEE
Q 019500 112 AAAAILEAMEAELDLVV 128 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vv 128 (340)
..+++++|-+.|++..+
T Consensus 207 ~~~ll~~~~~~gv~V~v 223 (451)
T TIGR03023 207 ILELLDALEDLTVDVRL 223 (451)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 56788899999988644
No 137
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=95.49 E-value=0.079 Score=54.44 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=61.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecChh---hHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPP---FAAA 114 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~~---~v~~ 114 (340)
+++|+|+ |..|..+.+.+.+. ||++++.++++..+.++.|+|++.+.+++. .++.+|+ +++.|.. ...+
T Consensus 148 rvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r~~ 225 (476)
T PRK15204 148 KTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKTHF 225 (476)
T ss_pred eEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHHHH
Confidence 5778899 77788888888764 899888888654335689999998876552 2235675 7888843 4557
Q ss_pred HHHHHHHcCCcEEEEec
Q 019500 115 AILEAMEAELDLVVCIT 131 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t 131 (340)
.+++|.+.|++.+.++.
T Consensus 226 il~~l~~~gv~~V~vIP 242 (476)
T PRK15204 226 WLRELSKHHCRSVTVVP 242 (476)
T ss_pred HHHHHhhcCCeEEEEeC
Confidence 88999888987544333
No 138
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.49 E-value=0.16 Score=49.19 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=48.6
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCc-ccccCHHHhhccCCCcEEEEecChhh
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-PVFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~-p~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
+..++ |.|+|. |++|+.+++.+..+|++++ .+||.. .. .|. +.|.+++++.. +.|++++++|...
T Consensus 120 L~gkt--vgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~--~aDiv~~~lp~t~ 185 (303)
T PRK06436 120 LYNKS--LGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMK--KSDFVLISLPLTD 185 (303)
T ss_pred CCCCE--EEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHh--hCCEEEECCCCCc
Confidence 34444 556699 9999999999888999876 778764 22 233 34789999986 4899999999643
No 139
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.45 E-value=0.07 Score=50.54 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=59.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcc-----------cccCHHHhhccCCCcEEEEecCh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLP-----------VFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p-----------~y~sl~dip~~~~vDlavi~vp~ 109 (340)
+|.|+|+ |.+|...+..|.+.|+++. .++++..- +.+ .|+. ...+.+++ + +.|++++++|+
T Consensus 2 ~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVKA 76 (304)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEeccc
Confidence 5778899 9999999999998898855 44432100 111 2332 23455554 3 58999999999
Q ss_pred hhHHHHHHHHHHc-CC-cEEEEecCCCChh
Q 019500 110 PFAAAAILEAMEA-EL-DLVVCITEGIPQH 137 (340)
Q Consensus 110 ~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~ 137 (340)
..+.+++++.... +- ..++.++.|+...
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 9998888887753 32 2466778898633
No 140
>PRK08605 D-lactate dehydrogenase; Validated
Probab=95.43 E-value=0.085 Score=51.65 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=59.9
Q ss_pred eEEEEeCCCCCcchHHHHHH-HHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHH--H--
Q 019500 43 TRVICQGITGKNGTFHTEQA-IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--L-- 117 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l-~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v--~-- 117 (340)
.+|.|+|. |++|+.+++.+ ..+|.+++ ..||......-.++....+++++.. ..|++++++|.......+ +
T Consensus 147 ~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~--~aDvIvl~lP~t~~t~~li~~~~ 222 (332)
T PRK08605 147 LKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVE--GADIVTLHMPATKYNHYLFNADL 222 (332)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHH--hCCEEEEeCCCCcchhhhcCHHH
Confidence 35777799 99999999998 45677765 6787642111123344458999876 489999999976544443 1
Q ss_pred -HHHHcCCcEEEEecCCCChhhHHHHHHHH
Q 019500 118 -EAMEAELDLVVCITEGIPQHDMVRVKAAL 146 (340)
Q Consensus 118 -ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~a 146 (340)
+..+.|. .+|..+.|.. .+..++.+++
T Consensus 223 l~~mk~ga-ilIN~sRG~~-vd~~aL~~aL 250 (332)
T PRK08605 223 FKHFKKGA-VFVNCARGSL-VDTKALLDAL 250 (332)
T ss_pred HhcCCCCc-EEEECCCCcc-cCHHHHHHHH
Confidence 1223332 3455555643 3344455544
No 141
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.41 E-value=0.089 Score=52.63 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=47.7
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..|.|+|. |++|+.+++.+..+|++++ ..||.. ....+..-|.+++++.. ..|++++.+|-.
T Consensus 117 ktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~--~aDiV~lh~Plt 178 (381)
T PRK00257 117 RTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILE--ECDVISLHTPLT 178 (381)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHh--hCCEEEEeCcCC
Confidence 34667799 9999999999999999976 678754 22223334678999986 489999999953
No 142
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.38 E-value=0.03 Score=57.08 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=92.3
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC-----CCCcee---cCcccccCHHHhhccCCCcEEEEec
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK-----KGGTEH---LGLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~-----~~g~~i---~G~p~y~sl~dip~~~~vDlavi~v 107 (340)
..|..+.+ +|+|. |..|+.++.+|+..|.++++++-+. ..+.+. .|.++ .+++|+.. ..|++++.+
T Consensus 32 ~~LkgKtI--aIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~--~ADvVviLl 105 (487)
T PRK05225 32 SYLKGKKI--VIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIP--QADLVINLT 105 (487)
T ss_pred HHhCCCEE--EEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHH--hCCEEEEcC
Confidence 34555554 55599 9999999999999999977665543 111122 57766 46888765 489999999
Q ss_pred ChhhHHHHHHHHHHcC--CcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCCCcccccCCCCCCCCCcEEE
Q 019500 108 PPPFAAAAILEAMEAE--LDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGI 185 (340)
Q Consensus 108 p~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~~~~~~G~val 185 (340)
|... ...+-+-+... -...+.|+.||.-.... + . ..+.-.+-++-|-|+|-..-.-..-++ --|.-||+
T Consensus 106 PDt~-q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~-i-~-~~~dvdVimvAPKgpG~~vR~~y~~G~-----Gvp~l~AV 176 (487)
T PRK05225 106 PDKQ-HSDVVRAVQPLMKQGAALGYSHGFNIVEVG-E-Q-IRKDITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAV 176 (487)
T ss_pred ChHH-HHHHHHHHHhhCCCCCEEEecCCceeeeCc-e-e-CCCCCcEEEECCCCCCchHHHHHhcCC-----CceEEEEE
Confidence 9996 44444444443 34567899999743211 0 0 113445678899998854321000111 23455777
Q ss_pred E---ecChHHHHHHHHHHHhCCCC
Q 019500 186 V---SRSGTLTYEAVFQTTAVGLG 206 (340)
Q Consensus 186 v---SQSG~l~~~~~~~~~~~giG 206 (340)
- =-||.-.--.+.|+..-|-+
T Consensus 177 ~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 177 HPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred eecCCCCchHHHHHHHHHHHhCCC
Confidence 6 33554333344565543433
No 143
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.35 E-value=0.19 Score=48.89 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=48.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcc---cccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP---VFNTVAEAKAETKANASAIYVPPP-FAAAAI 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p---~y~sl~dip~~~~vDlavi~vp~~-~v~~~v 116 (340)
.+|.|+|. |++|+.+++.+..+|++++ .+||.. +...+.. -+.+++++.. +.|++++++|-. ....++
T Consensus 137 ~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~--~aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 137 FTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLS--QTRVLINLLPNTPETVGII 208 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHh--cCCEEEECCCCCHHHHHHh
Confidence 35677799 9999999999999999866 677654 2222222 2457888886 589999999953 334444
No 144
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.028 Score=53.52 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=54.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--------------------------cCcccccCHHHhhc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--------------------------LGLPVFNTVAEAKA 96 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--------------------------~G~p~y~sl~dip~ 96 (340)
+|.|+|+ |.||..++..+.+.|++++ .+|++... +.. ..+....++++...
T Consensus 3 ~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 3 KLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred EEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 4667799 9999999999999999854 44443200 010 01234456766655
Q ss_pred cCCCcEEEEecChhhHH--HHHHHHHHcCC-cEEE-EecCCCChhh
Q 019500 97 ETKANASAIYVPPPFAA--AAILEAMEAEL-DLVV-CITEGIPQHD 138 (340)
Q Consensus 97 ~~~vDlavi~vp~~~v~--~~v~ea~~~Gv-k~vv-i~t~Gf~e~~ 138 (340)
+.|+++.++|.+... .++.++.+.-- ..++ +-++.++.++
T Consensus 81 --~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~ 124 (288)
T PRK09260 81 --DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE 124 (288)
T ss_pred --CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH
Confidence 589999999987632 34444333222 2222 3456666544
No 145
>PRK07574 formate dehydrogenase; Provisional
Probab=95.33 E-value=0.16 Score=50.98 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=48.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
.+|.|+|. |++|+.+++.+..+|++++ ..||..... .-.|+..|.+++++.. ..|++++++|-
T Consensus 193 ktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPl 258 (385)
T PRK07574 193 MTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVS--VCDVVTIHCPL 258 (385)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhh--cCCEEEEcCCC
Confidence 35677799 9999999999999999876 677653111 1346666789999986 58999999995
No 146
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.32 E-value=0.077 Score=51.96 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=62.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCCC------------------------Cc--eecC--cccc--c
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKKG------------------------GT--EHLG--LPVF--N 89 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~~------------------------g~--~i~G--~p~y--~ 89 (340)
+|.|+|+ |++|+.+.+.+.+.+ +++++ +|.-.. |+ .+.| ++++ +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vva-Ind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVA-LNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEE-EecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 3667799 999999999988753 77774 443110 01 0223 3344 2
Q ss_pred CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
+++++|= +.++|+++.|++.....+.+..++++|.+.++ ++.-+.
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~-~SaP~~ 124 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVL-FSHPGA 124 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEE-ecCCCc
Confidence 6777773 34799999999999999999999999998865 454443
No 147
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.29 E-value=0.1 Score=50.72 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=112.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~ 122 (340)
+|.|+|+||-.|..+.+.|.++ .+++++....+. .. . .+.+++.+ ++|++++++|.+...+.+.++.+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~---~-~~~~~~~~--~~D~vFlalp~~~s~~~~~~~~~~ 72 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD---A-AERAKLLN--AADVAILCLPDDAAREAVSLVDNP 72 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC---c-CCHhHhhc--CCCEEEECCCHHHHHHHHHHHHhC
Confidence 5778899999999999999987 456664432221 10 0 13445544 599999999999999999999898
Q ss_pred CCcEEEEecCCCChhh-----HHHH----HHHHhccCCcEEEccCCCCcccCCCcccccCCC---CCC-CCCcEEEEecC
Q 019500 123 ELDLVVCITEGIPQHD-----MVRV----KAALNNQSKTRLVGPNCPGVIKPGECKIGIMPG---YIH-KPGRIGIVSRS 189 (340)
Q Consensus 123 Gvk~vvi~t~Gf~e~~-----~~~l----~~~aar~~girviGPNc~Gi~~p~~~~~~~~~~---~~~-~~G~valvSQS 189 (340)
|++. |-+++.|.-++ .-++ .+.+ ++. -.|--|+|.=...- +...|- ... +...+.+-+-|
T Consensus 73 g~~V-IDlSadfRl~~~~~yglPEln~~~~~~i-~~a-~lIAnPgC~aTa~~----LaL~PL~~~~li~~~~~~~~~a~S 145 (310)
T TIGR01851 73 NTCI-IDASTAYRTADDWAYGFPELAPGQREKI-RNS-KRIANPGCYPTGFI----ALMRPLVEAGILPADFPITINAVS 145 (310)
T ss_pred CCEE-EECChHHhCCCCCeEEccccCHHHHHhh-ccC-CEEECCCCHHHHHH----HHHHHHHHcCCccccceEEEEecc
Confidence 8874 66776653221 1111 1111 222 26778898532210 111110 001 22247777777
Q ss_pred h--HHHHHHHHHHHhCCCC------ceEEeecCCCCCCCCCHHHHHHHhhcC----------CCccEEE--EEEcc---C
Q 019500 190 G--TLTYEAVFQTTAVGLG------QSTCVGIGGDPFNGTNFVDCVTKFIAD----------PQTEGII--LIGEI---G 246 (340)
Q Consensus 190 G--~l~~~~~~~~~~~giG------~S~~vs~Gn~a~~dv~~~d~l~~l~~D----------p~T~~I~--ly~E~---~ 246 (340)
| +-+....+...+ ..+ --+..+++-. ---..|+.+++... |-+|.|+ +|++. -
T Consensus 146 G~SGAGr~~~~~l~~-q~~~~e~~~~~~~Y~~~~~---HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti~~~l~~~~ 221 (310)
T TIGR01851 146 GYSGGGKAMIADYEQ-GSADNPSLQPFRIYGLALT---HKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHLQTLA 221 (310)
T ss_pred ccCccChhhhHHhhh-cccchhhccCceeccCCCC---CCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEEEEEeccCC
Confidence 6 122222222211 111 1224445411 24567888887542 3445553 55553 1
Q ss_pred -CCcHHHHHHHHHHhCCCCCEEEEEe
Q 019500 247 -GTAEEDAAALIKESGTEKPIVAFIA 271 (340)
Q Consensus 247 -g~~~~~~~~f~~a~r~~KPVvvlk~ 271 (340)
+...++..+.++..-++.|.|=+.+
T Consensus 222 ~~~~~~~~~~~~~~~Y~~epfVrv~~ 247 (310)
T TIGR01851 222 SKVSPADIHAALADYYQGEQFVRVAP 247 (310)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 1123455555554447888886653
No 148
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=95.18 E-value=0.097 Score=53.13 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred EEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCC--CCCceecCcccccCHHHhh---ccCCCcEEEEecCh---hhH
Q 019500 44 RVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPK--KGGTEHLGLPVFNTVAEAK---AETKANASAIYVPP---PFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~--~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~---~~v 112 (340)
+++|+|+ |..|..+.+.+.+ .||++++.++++ ..+..+.|+|++.+ +++. .++++|.++++.|. +..
T Consensus 127 rvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~~~ 204 (456)
T TIGR03022 127 PAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAEDM 204 (456)
T ss_pred eEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHHHH
Confidence 5788899 7778888887764 478888777654 22356889999976 5543 33579999999983 456
Q ss_pred HHHHHHHHHcCCcEEE
Q 019500 113 AAAILEAMEAELDLVV 128 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vv 128 (340)
.+.+++|.+.|+..+.
T Consensus 205 ~~ll~~l~~~~v~~V~ 220 (456)
T TIGR03022 205 ARLVRKLGALHFRNVL 220 (456)
T ss_pred HHHHHHHHhCCCeEEE
Confidence 6788889888884433
No 149
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.12 Score=49.67 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=54.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-------cC--------------cccccCHHHhhccCCCc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-------LG--------------LPVFNTVAEAKAETKAN 101 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-------~G--------------~p~y~sl~dip~~~~vD 101 (340)
+|.|+|+ |.||..++..+.+.|++++ .++++... +.. .| +....++++..+ +.|
T Consensus 6 ~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~aD 81 (311)
T PRK06130 6 NLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS--GAD 81 (311)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc--cCC
Confidence 5677799 9999999999999999855 55553310 000 11 123356666554 589
Q ss_pred EEEEecChhh--HHHHHHHHHHc-CCcEEE-EecCCCC
Q 019500 102 ASAIYVPPPF--AAAAILEAMEA-ELDLVV-CITEGIP 135 (340)
Q Consensus 102 lavi~vp~~~--v~~~v~ea~~~-Gvk~vv-i~t~Gf~ 135 (340)
++++++|++. ..+++.+.... .-+.++ ..|+|.+
T Consensus 82 lVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~ 119 (311)
T PRK06130 82 LVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119 (311)
T ss_pred EEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 9999999874 45566665442 122233 3556775
No 150
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=95.15 E-value=0.45 Score=48.31 Aligned_cols=121 Identities=16% Similarity=0.250 Sum_probs=86.8
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI 257 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~ 257 (340)
..|+|+.+.--++++.+.+|.....|--...|.-+|+.+ +.-.+.+.++-+..||+.|+|++=+=++=.. ..-+..++
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 569999999999999999999999998889999999886 3567788899999999999999832221000 11223344
Q ss_pred HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHH
Q 019500 258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAM 329 (340)
Q Consensus 258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~ 329 (340)
++++ .++|||+=-.|... +.-...|+..| +..++|++|-...+
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~-----------------------------~~g~~~l~~~~~~~~~~~~l~~A~~~~ 416 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNV-----------------------------DQGKRILKESGMTLITAEDLDDAAEKA 416 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCH-----------------------------HHHHHHHHhCCCCeEEcCCHHHHHHHH
Confidence 4443 68999885555322 33467788888 56667666655444
No 151
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.11 E-value=0.15 Score=49.95 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=46.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
+|.|+|. |++|+.+++.+..+|++++ ..+|... ..........+++++.+ ..|++++++|...
T Consensus 148 ~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~aDiVil~lP~t~ 210 (330)
T PRK12480 148 TVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIK--DADIISLHVPANK 210 (330)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHh--cCCEEEEeCCCcH
Confidence 5677799 9999999999999999866 5666541 11112333358999887 5899999999653
No 152
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.10 E-value=0.089 Score=50.49 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc--eecCcccc-------cCHHHhhccCCCcEEEEecChh---
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--EHLGLPVF-------NTVAEAKAETKANASAIYVPPP--- 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~--~i~G~p~y-------~sl~dip~~~~vDlavi~vp~~--- 110 (340)
+|+|.|+||..|+.+++.|.+.|+++.+.+. +... . .-.|+.++ .++.++.+ ++|+++-+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 5788999999999999999999999775543 2210 1 11233322 23444444 589988765421
Q ss_pred ----------hHHHHHHHHHHcCCcEEEEecC
Q 019500 111 ----------FAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 111 ----------~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
....+++.|.+.|++.+|.+++
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2356778888899998776555
No 153
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.04 E-value=0.13 Score=46.73 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI 116 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v 116 (340)
..+|+|+|. |++|+.+++.|.+.|.+++ ..|.+... . +-.|....++ +++... ++|+.+-+.... ...+.
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~- 102 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT- 102 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH-
Confidence 345788899 8999999999999999976 56654310 1 1124444433 455442 589988554332 22222
Q ss_pred HHHHHcCCcEEEEecCC-CChhhHHHHHHHHhccCCcEEE---ccCCCCccc
Q 019500 117 LEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV---GPNCPGVIK 164 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~G-f~e~~~~~l~~~aar~~girvi---GPNc~Gi~~ 164 (340)
+.+.+.+.++-.+.+ +.+.+.. +.+ ++.|+.++ +-|+-|+++
T Consensus 103 --~~~l~~~~v~~~AN~~~~~~~~~---~~L-~~~Gi~~~Pd~~~NaGGv~~ 148 (200)
T cd01075 103 --IPQLKAKAIAGAANNQLADPRHG---QML-HERGILYAPDYVVNAGGLIN 148 (200)
T ss_pred --HHHcCCCEEEECCcCccCCHhHH---HHH-HHCCCEEeCceeeeCcCcee
Confidence 234467765533333 2212222 223 67898885 336666665
No 154
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.01 E-value=0.042 Score=46.81 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=61.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCc----ccccCHHHhhccCCCcEEEEecChhhH-
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGL----PVFNTVAEAKAETKANASAIYVPPPFA- 112 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~----p~y~sl~dip~~~~vDlavi~vp~~~v- 112 (340)
..+|+|+|+ |.+|..+++.+.+.|...+..+|++... ++ ..+. ..+.+..++.+ ++|+++.++|+...
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence 446778899 8999999999998864334466665310 11 1122 13456666544 59999999999875
Q ss_pred -H--HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEc
Q 019500 113 -A--AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 113 -~--~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviG 156 (340)
. .....+++.|. .++-+++ .++.. .+.+.+ ++.|++++.
T Consensus 96 ~~~~~~~~~~~~~~~-~v~D~~~-~~~~~--~l~~~~-~~~g~~~v~ 137 (155)
T cd01065 96 GDELPLPPSLLKPGG-VVYDVVY-NPLET--PLLKEA-RALGAKTID 137 (155)
T ss_pred CCCCCCCHHHcCCCC-EEEEcCc-CCCCC--HHHHHH-HHCCCceeC
Confidence 1 12233444443 2233332 23322 454554 677777663
No 155
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.96 E-value=0.15 Score=51.07 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=46.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
..|.|+|. |++|+.+++.+..+|++++ ..||.. .+......|.+++++.. ..|++++.+|-
T Consensus 117 ktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~--~sDiI~lh~PL 177 (378)
T PRK15438 117 RTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQ--EADILTFHTPL 177 (378)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHh--hCCEEEEeCCC
Confidence 34666799 9999999999999999977 678754 22111124679999986 48999999984
No 156
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.14 Score=48.17 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=77.1
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCc-eecCcccccCHHHhhcc-CCCcEEEEecChh-hHHHHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGT-EHLGLPVFNTVAEAKAE-TKANASAIYVPPP-FAAAAILEAM 120 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~-~i~G~p~y~sl~dip~~-~~vDlavi~vp~~-~v~~~v~ea~ 120 (340)
+-++|. ||||..+.+++++.|.+ +.|-+||..-.+ .-.|.+.-.|++++..+ ..|-.+-+.+|+. .+..++++..
T Consensus 3 iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la 81 (300)
T COG1023 3 IGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLA 81 (300)
T ss_pred ceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHH
Confidence 446698 99999999999999999 556688865211 13566666787777654 3578999999997 7777888777
Q ss_pred HcCCcEEEEecCCCCh-hhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 121 EAELDLVVCITEGIPQ-HDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 121 ~~Gvk~vvi~t~Gf~e-~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
..=-+.=+++-.|-+. .|..+..+.+ ++.|+.++--.+-|=
T Consensus 82 ~~L~~GDivIDGGNS~y~Ds~rr~~~l-~~kgi~flD~GTSGG 123 (300)
T COG1023 82 PLLSAGDIVIDGGNSNYKDSLRRAKLL-AEKGIHFLDVGTSGG 123 (300)
T ss_pred hhcCCCCEEEECCccchHHHHHHHHHH-HhcCCeEEeccCCCC
Confidence 6533332445666442 2322222333 578999886666553
No 157
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=94.91 E-value=0.12 Score=53.00 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=59.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecCh---hhHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPP---PFAAA 114 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~---~~v~~ 114 (340)
+|+|+|+ |..|..+.+.+.+. ||++++.++.+. ..-.++|++.+++|++ .++++|-++++.|. +...+
T Consensus 145 rVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~--~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~e 221 (463)
T PRK10124 145 MVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPK--PGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKK 221 (463)
T ss_pred cEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCc--cccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHHH
Confidence 5788899 77888888888763 788888787543 1112345588877664 34679999999985 44567
Q ss_pred HHHHHHHcCCcEEE
Q 019500 115 AILEAMEAELDLVV 128 (340)
Q Consensus 115 ~v~ea~~~Gvk~vv 128 (340)
++++|.+.+++..+
T Consensus 222 ll~~~~~~~v~V~i 235 (463)
T PRK10124 222 LVRQLADTTCSVLL 235 (463)
T ss_pred HHHHHHHcCCeEEE
Confidence 88899999998644
No 158
>PLN02858 fructose-bisphosphate aldolase
Probab=94.89 E-value=0.15 Score=58.84 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=70.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCcccccCHHHhhccCCCcEEEEecChhhHHHHH---
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E--HLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAI--- 116 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v--- 116 (340)
.+|.++|. |+||..++++|.+.||++. ..|...... . -.|.....|..|+.+ ..|++++++|.....+.+
T Consensus 5 ~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~--~advVi~~l~~~~~v~~V~~g 80 (1378)
T PLN02858 5 GVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAK--DAAALVVVLSHPDQVDDVFFG 80 (1378)
T ss_pred CeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHh--cCCEEEEEcCChHHHHHHHhc
Confidence 45667799 9999999999999999844 444433101 1 247778899999987 589999999986554444
Q ss_pred -HHHHHcC-CcEEEEecCCCChhhHHHHHHHHhccCC--cEEE
Q 019500 117 -LEAMEAE-LDLVVCITEGIPQHDMVRVKAALNNQSK--TRLV 155 (340)
Q Consensus 117 -~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~~aar~~g--irvi 155 (340)
+.+++.- -..+|+-.+=.+.+..+++.+.+ ++.| +.++
T Consensus 81 ~~g~~~~l~~g~iivd~STi~p~~~~~la~~l-~~~g~~~~~l 122 (1378)
T PLN02858 81 DEGAAKGLQKGAVILIRSTILPLQLQKLEKKL-TERKEQIFLV 122 (1378)
T ss_pred hhhHHhcCCCcCEEEECCCCCHHHHHHHHHHH-HhcCCceEEE
Confidence 2233321 12345445545555666666655 4556 6655
No 159
>PLN03139 formate dehydrogenase; Provisional
Probab=94.88 E-value=0.26 Score=49.43 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=63.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHHHH-
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAILE- 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v~e- 118 (340)
.|.|+|. |++|+.+++.+..+|++++ ..||..... ...|+..+.+++++.. ..|++++++|- +....++.+
T Consensus 201 tVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~ 276 (386)
T PLN03139 201 TVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLP--KCDVVVINTPLTEKTRGMFNKE 276 (386)
T ss_pred EEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHh--hCCEEEEeCCCCHHHHHHhCHH
Confidence 4566698 9999999999999999976 467653111 2346666779999986 48999999994 333444422
Q ss_pred HHH-cCCcEEEEecCCC-ChhhHHHHHHHHhccCCcE
Q 019500 119 AME-AELDLVVCITEGI-PQHDMVRVKAALNNQSKTR 153 (340)
Q Consensus 119 a~~-~Gvk~vvi~t~Gf-~e~~~~~l~~~aar~~gir 153 (340)
.++ .+-..++ +-.+- .--+.+.|.+++ ++..+.
T Consensus 277 ~l~~mk~ga~l-IN~aRG~iVDe~AL~~AL-~sG~l~ 311 (386)
T PLN03139 277 RIAKMKKGVLI-VNNARGAIMDTQAVADAC-SSGHIG 311 (386)
T ss_pred HHhhCCCCeEE-EECCCCchhhHHHHHHHH-HcCCce
Confidence 222 2333333 33322 223445565655 444443
No 160
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.86 E-value=0.27 Score=45.35 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=28.3
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
+++.+|+|.|+||..|+.+++.|.+.|++++..+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 4456788999999999999999999999876443
No 161
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.85 E-value=0.2 Score=50.53 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=61.0
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCccccc-CHHHhhc-------------cCCCcEEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFN-TVAEAKA-------------ETKANASAI 105 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~-sl~dip~-------------~~~vDlavi 105 (340)
.+|.|+|. |.+|...+..|.+.|++++ ++|++...-+ -...|.+. .++++.. ..+.|++++
T Consensus 4 ~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 35677799 9999999999999999865 5554431011 12344442 4444421 014899999
Q ss_pred ecCh----------hhHHHHHHHHHHcC-CcEEEEecCCCChhhHHHHHH
Q 019500 106 YVPP----------PFAAAAILEAMEAE-LDLVVCITEGIPQHDMVRVKA 144 (340)
Q Consensus 106 ~vp~----------~~v~~~v~ea~~~G-vk~vvi~t~Gf~e~~~~~l~~ 144 (340)
|+|. ..+.++++...+.- -..+||..|..+....+++.+
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHH
Confidence 9998 46666666655532 234566666665544444444
No 162
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.83 E-value=0.23 Score=48.63 Aligned_cols=64 Identities=16% Similarity=0.299 Sum_probs=47.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|.|+|. |++|+.+++.+..+|++++ .+||..... ...|.+ +.+++++.. ..|++++++|..
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~--~aDiV~l~lP~t 215 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLR--ESDFVSLHVPLT 215 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHh--hCCEEEEeCCCC
Confidence 334666799 9999999999999999866 677654211 123443 568999876 489999999963
No 163
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.80 E-value=0.067 Score=52.59 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=57.6
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCe---EEEeeCCCCCCcee--cCcc-cccC--HHHhhccCCCcEEEEecChhhHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKGGTEH--LGLP-VFNT--VAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~---vv~~VnP~~~g~~i--~G~p-~y~s--l~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
|.|+||||..|..+++.|.+.++. ++.....+..|+.+ .|.. .+.+ ..++ . ++|++++++|.....+.+
T Consensus 2 VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 2 VAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEFA 78 (339)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHHH
Confidence 567799999999999999886664 33222333333433 2321 2222 2333 2 599999999999999999
Q ss_pred HHHHHcCCcEEEEecCCC
Q 019500 117 LEAMEAELDLVVCITEGI 134 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf 134 (340)
.++.++|++ +|-.++.|
T Consensus 79 ~~~~~~G~~-VID~ss~~ 95 (339)
T TIGR01296 79 PKAAKCGAI-VIDNTSAF 95 (339)
T ss_pred HHHHHCCCE-EEECCHHH
Confidence 999999985 34445544
No 164
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.51 E-value=0.15 Score=52.99 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=48.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
+|.|+|. |++|+.+++.+..+|++++ ..||....+ .-.|++.+.+++++.. ..|++++++|..
T Consensus 140 tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~--~aDvV~l~lPlt 204 (525)
T TIGR01327 140 TLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLA--RADFITVHTPLT 204 (525)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHh--hCCEEEEccCCC
Confidence 4566699 9999999999999999866 678742111 2346665678999987 589999999964
No 165
>PLN00016 RNA-binding protein; Provisional
Probab=94.45 E-value=0.26 Score=48.57 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=59.8
Q ss_pred CCeEEEEe----CCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-------------ecCcccc-cCHHHh---hccCC
Q 019500 41 KNTRVICQ----GITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-------------HLGLPVF-NTVAEA---KAETK 99 (340)
Q Consensus 41 ~~iaViVv----Gasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-------------i~G~p~y-~sl~di---p~~~~ 99 (340)
.+.+|+|. |++|..|+.+++.|.+.|++++..+........ -.|+..+ .++.++ .....
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 34579999 999999999999999999987744332210000 1234333 355543 22235
Q ss_pred CcEEEEecC--hhhHHHHHHHHHHcCCcEEEEecC
Q 019500 100 ANASAIYVP--PPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 100 vDlavi~vp--~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+|+++.+.. .+.+..+++.|.+.|++.+|.+++
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 898887753 234667788888899988665554
No 166
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.42 E-value=0.28 Score=46.60 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=57.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC-------CCceec---C-----cccccCHHHhhccCCCcEEEEecC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-------GGTEHL---G-----LPVFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~-------~g~~i~---G-----~p~y~sl~dip~~~~vDlavi~vp 108 (340)
+|.|+|+ |.+|...+..|.+.|+++. .+++.. .|-.+. + .+...+.++..+ +.|++++++|
T Consensus 2 kI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAVK 77 (305)
T ss_pred eEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEec
Confidence 5777899 9999999999998888755 344310 011111 1 112334555543 5899999999
Q ss_pred hhhHHHHHHHHHHcC-C-cEEEEecCCCCh
Q 019500 109 PPFAAAAILEAMEAE-L-DLVVCITEGIPQ 136 (340)
Q Consensus 109 ~~~v~~~v~ea~~~G-v-k~vvi~t~Gf~e 136 (340)
+..+.++++++...- - ..++.++.|+..
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred ccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 999999888887642 2 234556778853
No 167
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.31 E-value=0.24 Score=49.40 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=58.4
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc----------eecCcccc-------cCHHHhhccC--CC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----------EHLGLPVF-------NTVAEAKAET--KA 100 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~----------~i~G~p~y-------~sl~dip~~~--~v 100 (340)
++..+|+|.|++|.+|+.+++.|.+.|++++..+.+...-. ...++..+ .++.++.+.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 34567899999999999999999999999775543221000 01122222 2344444321 48
Q ss_pred cEEEEecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 101 NASAIYVPP-------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 101 Dlavi~vp~-------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
|+++.+..+ .....+++.|.+.|++.+|.+++
T Consensus 138 D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 138 DVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred cEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 998876532 12446778888889998776665
No 168
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.26 E-value=0.24 Score=48.56 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=51.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--CceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v 116 (340)
.|.|+|. |++|+.+++.+..+|++++ ..||... -....+..-..+|+++.. ..|++++.+|- +....++
T Consensus 144 TvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~--~sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 144 TVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLA--EADILTLHLPLTPETRGLI 215 (324)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHh--hCCEEEEcCCCCcchhccc
Confidence 3566699 9999999999999999977 7888321 023445555678999997 48999999986 3344444
No 169
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=94.17 E-value=0.32 Score=49.85 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=65.8
Q ss_pred cchHHHHHHHHcCCeEEEeeCCCCCC-ce-e------cCcccccCHHHhhcc-CCCcEEEEecChhh-HHHHHHHHHHcC
Q 019500 54 NGTFHTEQAIEYGTKMVGGVTPKKGG-TE-H------LGLPVFNTVAEAKAE-TKANASAIYVPPPF-AAAAILEAMEAE 123 (340)
Q Consensus 54 ~G~~v~~~l~~~G~~vv~~VnP~~~g-~~-i------~G~p~y~sl~dip~~-~~vDlavi~vp~~~-v~~~v~ea~~~G 123 (340)
||+.+++||.+.||++. ..|..... ++ + .|...+.|++|+.+. ..+|++++++|... +.++++.++..-
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 68899999999999955 55654310 11 1 147788999999863 24899999999864 445555555432
Q ss_pred C-cEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 124 L-DLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 124 v-k~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
- ..+||=.+-....+..+..+.+ ++.|+++++---.|
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l-~~~Gi~fvdapVSG 117 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKEL-AEKGIHFIGMGVSG 117 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH-HhcCCeEEecCCCC
Confidence 2 2233222222233444444444 67899988766555
No 170
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=94.16 E-value=0.13 Score=44.05 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=49.5
Q ss_pred EEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCC--CCceecCcccccCHHHhhc---cCCCcEEEEecCh---hhHHH
Q 019500 46 ICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKK--GGTEHLGLPVFNTVAEAKA---ETKANASAIYVPP---PFAAA 114 (340)
Q Consensus 46 iVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~--~g~~i~G~p~y~sl~dip~---~~~vDlavi~vp~---~~v~~ 114 (340)
.++|. +..+..+.+.+.+ .||++++.++++. .++++.|+|+..+++|+++ ++++|-++++.|. +...+
T Consensus 81 ~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ 159 (175)
T PF13727_consen 81 LIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKR 159 (175)
T ss_dssp EEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHH
T ss_pred EEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHH
Confidence 34464 5556677777766 4889887777654 2356789999987777764 3579999999876 45667
Q ss_pred HHHHHHHcCCcEE
Q 019500 115 AILEAMEAELDLV 127 (340)
Q Consensus 115 ~v~ea~~~Gvk~v 127 (340)
++++|-+.|++.-
T Consensus 160 ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 160 IIEELENHGVRVR 172 (175)
T ss_dssp HHHHHHTTT-EEE
T ss_pred HHHHHHhCCCEEE
Confidence 8888888888763
No 171
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.13 E-value=0.19 Score=47.89 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=24.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
+|.|+|+ |.||..++..+.+.|++++ .+|++
T Consensus 5 ~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~ 35 (291)
T PRK06035 5 VIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVS 35 (291)
T ss_pred EEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 4667799 9999999999999999854 45543
No 172
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.23 Score=48.54 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=63.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCC----------C-------CCc--------ee--cCcccccC--
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK----------K-------GGT--------EH--LGLPVFNT-- 90 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~----------~-------~g~--------~i--~G~p~y~s-- 90 (340)
.++|.|.|. |++|+.+++.+.+.+ .++++..++. + .++ .+ .+++++.+
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCC
Confidence 368999999 999999999888864 6777432211 1 100 12 25677764
Q ss_pred HHHhhcc-CCCcEEEEecChhhHHHHHHHHHHc-CCcEEEEecCC
Q 019500 91 VAEAKAE-TKANASAIYVPPPFAAAAILEAMEA-ELDLVVCITEG 133 (340)
Q Consensus 91 l~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~-Gvk~vvi~t~G 133 (340)
.+++|-. ..+|+++.|+|--.-.+..+.-+++ |+|.+++-.++
T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred hHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 4566643 4689999999999988888888888 59997754444
No 173
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=94.03 E-value=0.24 Score=45.62 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=55.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCCCCCc-ccccCcccccccccce
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAPPGRR-MGHAGVDVYTIFGSAI 296 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvvlk~Grs~~~g~~-~sHtg~~~~~~~~~al 296 (340)
++.+.|+.+.+||+.++|+|.+++.|-...+..++.+++ + .+|||+++--|-+.. |.- ++++.--+.... +.
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sg-gy~lasaad~I~a~p~--~~ 109 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQG-QYYLASAADEIYLNPS--GS 109 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCch-hhhhhhhCCEEEECCC--ce
Confidence 455667778889999999999998776666666665554 3 589999997763322 311 222221111111 11
Q ss_pred e-c-CCCCcHHHHHHHHHHcCCee
Q 019500 297 V-S-GGKGTAQDKIKTLREAGVTV 318 (340)
Q Consensus 297 a-~-~~~g~~~~~~a~~~qaGvv~ 318 (340)
. + |-.....-+..+|++.||-.
T Consensus 110 vg~iGv~~~~~~~~~ll~klGv~~ 133 (222)
T cd07018 110 VELTGLSAETLFFKGLLDKLGVEV 133 (222)
T ss_pred EEeeccchhhhhHHHHHHHcCCcE
Confidence 1 0 00123445778899999864
No 174
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.01 E-value=0.13 Score=48.97 Aligned_cols=90 Identities=10% Similarity=0.061 Sum_probs=52.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCcee------------cC-------------cccccCHHHhhcc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEH------------LG-------------LPVFNTVAEAKAE 97 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~~i------------~G-------------~p~y~sl~dip~~ 97 (340)
+|.|+|+ |.||..++..+...|++++ +-.||+....-. .| +..-.+++++.
T Consensus 6 kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-- 82 (292)
T PRK07530 6 KVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA-- 82 (292)
T ss_pred EEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc--
Confidence 4667799 9999999999999999844 334443210000 12 23345666543
Q ss_pred CCCcEEEEecChhh--HHHHHHHHHHcC-CcEEEE-ecCCCChh
Q 019500 98 TKANASAIYVPPPF--AAAAILEAMEAE-LDLVVC-ITEGIPQH 137 (340)
Q Consensus 98 ~~vDlavi~vp~~~--v~~~v~ea~~~G-vk~vvi-~t~Gf~e~ 137 (340)
+.|+++.++|.+. -..++++..+.- -..+++ -|++++..
T Consensus 83 -~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 83 -DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred -CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 5899999998752 234444443331 123333 56677643
No 175
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.95 E-value=0.47 Score=45.98 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=113.2
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCCCce--ecCcccccCHHHhhccCCCcEEEEecChhhHH-H
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKGGTE--HLGLPVFNTVAEAKAETKANASAIYVPPPFAA-A 114 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~g~~--i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~-~ 114 (340)
.|...+|--+|. |.||+..++||++.||+ .||-+++... ++ -.|..++.|-.|+.+ ..|+++.++|..... +
T Consensus 32 ~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 32 TPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAE--DSDVVITMVPNPKDVKD 107 (327)
T ss_pred CcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHh--hcCEEEEEcCChHhhHH
Confidence 344556666688 99999999999999999 5666665431 22 358899999999998 599999999875543 3
Q ss_pred HHHHHHHcCCcE-------EEEecCCCChhhHHHHHHHHhccCCcE-EEccCCCCcccCCCcccccCCC-C---------
Q 019500 115 AILEAMEAELDL-------VVCITEGIPQHDMVRVKAALNNQSKTR-LVGPNCPGVIKPGECKIGIMPG-Y--------- 176 (340)
Q Consensus 115 ~v~ea~~~Gvk~-------vvi~t~Gf~e~~~~~l~~~aar~~gir-viGPNc~Gi~~p~~~~~~~~~~-~--------- 176 (340)
++.. +.|+-. ..|-.+-..+.-..+|.+.+ +..|.+ |=.|=+-|..-...-.++|+.. .
T Consensus 108 v~~g--~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i-~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 108 VLLG--KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAI-SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred HhcC--CCcceeeccCCCceEEeccccCHHHHHHHHHHH-HhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 3322 333211 11222333333355666665 444556 4477777765443112333211 0
Q ss_pred -CCCCC-cEEEEecChHHHHH-HH-HHHH-hCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 019500 177 -IHKPG-RIGIVSRSGTLTYE-AV-FQTT-AVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILI 242 (340)
Q Consensus 177 -~~~~G-~valvSQSG~l~~~-~~-~~~~-~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly 242 (340)
.-.=| .+-+..++|+-... +. +.+. -.=+|++-...+|-.. +++...|++-+.. -......+|
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~--GLd~~~l~eiln~-G~~~S~~~~ 252 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL--GLDAKKLLEILNT-GRCWSSMFY 252 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhc-CCcccHHHh
Confidence 01125 67777777743322 11 1111 1124566666677775 7888888887765 444444444
No 176
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=93.93 E-value=0.11 Score=45.46 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=60.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecCc--ccc--cCH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT--------------------------EHLGL--PVF--NTV 91 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~--------------------------~i~G~--p~y--~sl 91 (340)
++|.|.|. |++|+.+++.+... .+++++.-+|...-+ .+.|. +++ ++.
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence 57889999 99999999988753 677775544541101 02342 222 345
Q ss_pred HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500 92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (340)
Q Consensus 92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi 129 (340)
+++| .+..+|+++.|++.-...+..+.-++.|+|.+++
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred cccccccccccEEEeccccceecccccccccccccceee
Confidence 5665 2246899999999999889999999999999664
No 177
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.91 E-value=0.071 Score=50.80 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=53.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEec----------Ch---
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----------PP--- 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----------p~--- 109 (340)
++|+|+|+||-+|+.+.+.+.+.|++++ .++.+. -. +.-...+.++.++.+||++|-+. .+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~-~~~r~~--~d---l~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVI-ATSRSD--LD---LTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEE-EESTTC--S----TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEE-EeCchh--cC---CCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 4789999999999999999998888876 445442 12 22234566665544699999885 11
Q ss_pred -----hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 -----PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 -----~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
.....+++.|.+.|++.+. +|+
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~-~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIH-IST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence 2233567788889999866 454
No 178
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.90 E-value=0.34 Score=46.08 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=55.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---------------------------ecCcccccCHHHhh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---------------------------HLGLPVFNTVAEAK 95 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---------------------------i~G~p~y~sl~dip 95 (340)
+|.|+|+ |.||..++..+.+.|+++. .++++... +. ...+....++++..
T Consensus 5 kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 5 NVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 5667799 9999999999988898844 44443200 00 01233456787765
Q ss_pred ccCCCcEEEEecChh--hHHHHHHHHHHcCC-cEEE-EecCCCChh
Q 019500 96 AETKANASAIYVPPP--FAAAAILEAMEAEL-DLVV-CITEGIPQH 137 (340)
Q Consensus 96 ~~~~vDlavi~vp~~--~v~~~v~ea~~~Gv-k~vv-i~t~Gf~e~ 137 (340)
+ +.|+++.++|.+ ...+++++..+.-- +.++ .-|+.++..
T Consensus 83 ~--~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~ 126 (287)
T PRK08293 83 K--DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS 126 (287)
T ss_pred c--CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH
Confidence 5 589999999955 55666666554322 2333 344555443
No 179
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.89 E-value=0.36 Score=46.87 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=47.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
.-.|.|+|. |+.|+.+++.+..+|.+++ ..||... ....+++ |.+++++.. ..|++++.+|-
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~--~sDvv~lh~Pl 206 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLK--TSDIISIHAPL 206 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhh--cCCEEEEeCCC
Confidence 334667799 9999999999999999877 6787541 1223443 668999987 48999999984
No 180
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.83 E-value=0.24 Score=47.69 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=49.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce-------------ecC-------------cccccCHHHhhc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE-------------HLG-------------LPVFNTVAEAKA 96 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~-------------i~G-------------~p~y~sl~dip~ 96 (340)
+|.|+|+ |.||..++.++.+.|++++ .+|++... +. -.| +....++++..+
T Consensus 4 ~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 4 SVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 5677797 9999999999999999855 56654310 00 012 245567877665
Q ss_pred cCCCcEEEEecChh--hHHHHHHHHHHc
Q 019500 97 ETKANASAIYVPPP--FAAAAILEAMEA 122 (340)
Q Consensus 97 ~~~vDlavi~vp~~--~v~~~v~ea~~~ 122 (340)
+.|+++.++|.+ .-..++.++.+.
T Consensus 82 --~ad~Vi~avpe~~~~k~~~~~~l~~~ 107 (308)
T PRK06129 82 --DADYVQESAPENLELKRALFAELDAL 107 (308)
T ss_pred --CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence 599999999975 334445554443
No 181
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.80 E-value=0.46 Score=45.81 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=57.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEE-eeCCCC----CCcee---cC------cccccCHHHhhccCCCcEEEEec
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKK----GGTEH---LG------LPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~-~VnP~~----~g~~i---~G------~p~y~sl~dip~~~~vDlavi~v 107 (340)
..+|.|+|+ |.+|......|.+.|+++.. .-++.. .|-.+ .| .+++.+.++.. .+|+++++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMP---PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcC---CCCEEEEEe
Confidence 457888899 99999999999988887442 222211 01111 12 22333443322 589999999
Q ss_pred ChhhHHHHHHHHHHcC--CcEEEEecCCCChh
Q 019500 108 PPPFAAAAILEAMEAE--LDLVVCITEGIPQH 137 (340)
Q Consensus 108 p~~~v~~~v~ea~~~G--vk~vvi~t~Gf~e~ 137 (340)
+...+.++++.....- -..++.++-|+..+
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 9988887776665432 12356677888643
No 182
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.70 E-value=0.26 Score=50.89 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=62.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-ee---------------------cC-cccccCHHHhhccCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-EH---------------------LG-LPVFNTVAEAKAETKA 100 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~i---------------------~G-~p~y~sl~dip~~~~v 100 (340)
+|.|+|+ |.||..++.++.+.|+++. ..|++.... .+ .| +....++++..+ +.
T Consensus 6 kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--~a 81 (495)
T PRK07531 6 KAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--GA 81 (495)
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--CC
Confidence 4667799 9999999999999999854 555543101 10 12 455567877665 59
Q ss_pred cEEEEecChhhH-HH-HHHHHHHcCCc---EEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500 101 NASAIYVPPPFA-AA-AILEAMEAELD---LVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (340)
Q Consensus 101 Dlavi~vp~~~v-~~-~v~ea~~~Gvk---~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc 159 (340)
|+++.++|.+.. .. ++.+. +...+ .+..-|+|++..+ +.+.+.+...+-+.-|+.
T Consensus 82 D~Vieavpe~~~vk~~l~~~l-~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~n 141 (495)
T PRK07531 82 DWIQESVPERLDLKRRVLAEI-DAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPYN 141 (495)
T ss_pred CEEEEcCcCCHHHHHHHHHHH-HhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecCC
Confidence 999999998852 22 33333 22222 2333445776443 333332333344555653
No 183
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.65 E-value=0.092 Score=46.55 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
...|.|+|. |+.|+.+++.+..+|++++ .+||...... ..+. -|.+++|+.. ..|++++..|.
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~--~aDiv~~~~pl 101 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLA--QADIVSLHLPL 101 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHH--H-SEEEE-SSS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcc--hhhhhhhhhcc
Confidence 345667799 9999999999999999876 7888762111 2244 4669999987 48999999994
No 184
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=93.63 E-value=0.25 Score=50.12 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=57.8
Q ss_pred EEEEeCCCCCcchHHHHHHHH---cCCeEEEeeCCCCCCceecCcccccCHHHhh---ccCCCcEEEEecChhhH---HH
Q 019500 44 RVICQGITGKNGTFHTEQAIE---YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK---AETKANASAIYVPPPFA---AA 114 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~---~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip---~~~~vDlavi~vp~~~v---~~ 114 (340)
+++|+|+ +..|..+.+.+.+ .||++++.+++......+.|+|++.+++|++ +++++|-++++.|...- .+
T Consensus 126 rvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~~~ 204 (442)
T TIGR03013 126 RILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPVD 204 (442)
T ss_pred cEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchHHH
Confidence 5778899 6667666444433 4789888784322114678999998766654 44679999999987543 23
Q ss_pred HHHHHHHcCCcEEE
Q 019500 115 AILEAMEAELDLVV 128 (340)
Q Consensus 115 ~v~ea~~~Gvk~vv 128 (340)
.+++|-+.|++..+
T Consensus 205 ~l~~~~~~gv~V~i 218 (442)
T TIGR03013 205 ELLECKLSGIEVVD 218 (442)
T ss_pred HHHHHHhCCCEEEE
Confidence 57888888887643
No 185
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.59 E-value=0.27 Score=48.47 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcC----CeEEEeeCC------------------------CCCCce--ecC--cccc--
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYG----TKMVGGVTP------------------------KKGGTE--HLG--LPVF-- 88 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G----~~vv~~VnP------------------------~~~g~~--i~G--~p~y-- 88 (340)
++|.|+|+ |++|+.+.+.+.+.+ ++++ .||. +..|+. +.| ++++
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 57888899 999999999988743 3444 4442 111111 334 3344
Q ss_pred cCHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 89 NTVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 89 ~sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
++++++|= +.++|+++.|+......+....++++|++.++ +|+-+.
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~-iSap~~ 126 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVL-FSHPGS 126 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEE-ecCCcc
Confidence 26777763 24799999999999999999999999999855 565443
No 186
>PRK05865 hypothetical protein; Provisional
Probab=93.58 E-value=1.8 Score=47.80 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=57.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcc-------cccCHHHhhccCCCcEEEEecCh-------
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLP-------VFNTVAEAKAETKANASAIYVPP------- 109 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p-------~y~sl~dip~~~~vDlavi~vp~------- 109 (340)
+|+|.|++|.+|+.+++.|.+.|++++........ ....++. -..++.++.+ ++|.+|-+...
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~~~~~v 78 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-SWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRGRNDHI 78 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-hcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCcccchHHH
Confidence 57889999999999999999999997744432110 0001122 1223444444 58999887643
Q ss_pred --hhHHHHHHHHHHcCCcEEEEecCCC
Q 019500 110 --PFAAAAILEAMEAELDLVVCITEGI 134 (340)
Q Consensus 110 --~~v~~~v~ea~~~Gvk~vvi~t~Gf 134 (340)
.....+++.|.+.|++.+|.+++..
T Consensus 79 Nv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 79 NIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2345567778888998877677653
No 187
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.55 E-value=0.37 Score=43.71 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=42.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCCceecCcc-----ccc--CHHHhhccCCCcEEEEecChh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGLP-----VFN--TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g~~i~G~p-----~y~--sl~dip~~~~vDlavi~vp~~ 110 (340)
+|+|+||||+.|+.+.+...+.|.++.+.| ||..- ....++. +|. ++++... ..|++|.+..+.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~ 73 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAG 73 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccCC
Confidence 567779999999999999999999988765 45431 1224443 332 2333333 579999876443
No 188
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=93.52 E-value=2.5 Score=42.24 Aligned_cols=124 Identities=18% Similarity=0.287 Sum_probs=92.5
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCc-HHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALI 257 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~-~~~~~~f~ 257 (340)
..|+|+.+.-.++++.+.+|...-.|--...|.-+|+.+ +.=.+.+.++.+..||++|+|.+-+=++=.. ..-++-..
T Consensus 254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA-~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi 332 (387)
T COG0045 254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGA-TAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGII 332 (387)
T ss_pred ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHH
Confidence 359999999999999999999988888889999999887 3445889999999999999998875542110 11223334
Q ss_pred HHhC---CCCCEEEEEeCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcC--CeecCCHHHHHHHHHHH
Q 019500 258 KESG---TEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAG--VTVVESPAKIGAAMLEV 332 (340)
Q Consensus 258 ~a~r---~~KPVvvlk~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaG--vv~v~~~~el~~~~~~~ 332 (340)
++++ .++|+|+=-.|.. .+.-...++++| +..+++++|....+.++
T Consensus 333 ~Al~e~~~~vPlVVRL~GtN-----------------------------~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~~ 383 (387)
T COG0045 333 AALKEVGVNVPLVVRLEGTN-----------------------------VEEGKRILAESGLNIIAADDLDEAAEKAVEL 383 (387)
T ss_pred HHHHhcCCCCCEEEEcCCCC-----------------------------HHHHHHHHHHcCCceEecccHHHHHHHHHHH
Confidence 4544 6799998766643 334567788888 88888888877665443
No 189
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.48 E-value=0.46 Score=46.21 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=45.8
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
...|.|+|. |++|+.+++.+..+|.+++ .+++.. ...... -|.+++++.. ..|++++++|-
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~--~sDiv~l~~Pl 207 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLK--QADIVTLHCPL 207 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHH--hCCEEEEcCCC
Confidence 345677799 9999999999999999977 467653 211111 2678999887 48999999984
No 190
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.46 E-value=0.19 Score=44.01 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=30.3
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.-+.-+|+|+|. |++|...++.|.+.|.++. .|+|..
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~ 46 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI 46 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence 445667888999 9999999999999999866 778875
No 191
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.43 E-value=0.6 Score=47.11 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=49.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh-hhHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-PFAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-~~v~~~v 116 (340)
.|.|+|. |++|+.+++.+..+|++++ ..||... ....+...+.+++++.. ..|++++.+|- +.....+
T Consensus 153 tvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~--~sDiVslh~Plt~~T~~li 221 (409)
T PRK11790 153 TLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLA--QSDVVSLHVPETPSTKNMI 221 (409)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHh--hCCEEEEcCCCChHHhhcc
Confidence 4566699 9999999999999999976 6777541 12233444458999987 48999999995 3333444
No 192
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.39 E-value=0.27 Score=47.44 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=64.2
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCccc--ccCHHHhhccCCCcEEEEecChhhHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPV--FNTVAEAKAETKANASAIYVPPPFAAAAI 116 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~~v 116 (340)
.-+|.|+|+ |.+|+.+++.+...|.++. .+|++.... +-.|.+. |.++.+... +.|+++.++|+..+.+..
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p~~~i~~~~ 227 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIPALVLTKEV 227 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCChhhhhHHH
Confidence 346788899 8999999999999998744 556543101 1234332 235555544 589999999976543333
Q ss_pred HHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEcc-CCCCcc
Q 019500 117 LEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGP-NCPGVI 163 (340)
Q Consensus 117 ~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGP-Nc~Gi~ 163 (340)
-+..+.|. .++-+++.-...+. +.+ +++|++.+++ |-.|.+
T Consensus 228 l~~~~~g~-vIIDla~~pggtd~----~~a-~~~Gv~~~~~~~lpg~v 269 (296)
T PRK08306 228 LSKMPPEA-LIIDLASKPGGTDF----EYA-EKRGIKALLAPGLPGKV 269 (296)
T ss_pred HHcCCCCc-EEEEEccCCCCcCe----eeh-hhCCeEEEEECCCCccC
Confidence 23333332 23334432212222 122 6789998884 433443
No 193
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.37 E-value=0.5 Score=45.79 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=57.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCcc-----------------cccCHHHhhccCCCcEEE
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGLP-----------------VFNTVAEAKAETKANASA 104 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~p-----------------~y~sl~dip~~~~vDlav 104 (340)
+|.|+|+ |.+|...+..|.+.|+++. .+++...-+. -.|+. +..+.+++ . +.|+++
T Consensus 4 kI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vi 78 (341)
T PRK08229 4 RICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL-A--TADLVL 78 (341)
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhc-c--CCCEEE
Confidence 5677799 9999999999999998855 4554220011 11221 22344332 2 589999
Q ss_pred EecChhhHHHHHHHHHHcC-C-cEEEEecCCCChh
Q 019500 105 IYVPPPFAAAAILEAMEAE-L-DLVVCITEGIPQH 137 (340)
Q Consensus 105 i~vp~~~v~~~v~ea~~~G-v-k~vvi~t~Gf~e~ 137 (340)
+++|+....+++++....- - ..++.++.|+...
T Consensus 79 l~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 79 VTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999888887766542 2 2344567788643
No 194
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.27 E-value=0.49 Score=46.00 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=30.6
Q ss_pred ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
+.-|.-++.+|+|.|++|-.|+.+++.|.+.|+++++.
T Consensus 8 ~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~ 45 (348)
T PRK15181 8 RTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGL 45 (348)
T ss_pred hhcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 33344555689999999999999999999999987744
No 195
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.27 E-value=0.25 Score=41.92 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=57.0
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce--ecCc-------------ccccCHHHhhccCCCcEEEEecCh
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE--HLGL-------------PVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~--i~G~-------------p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
|+|+|+ |.+|...+..|.+.|+++.....++.. +. ..|+ +.+.+-..... .++|++++++.+
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPRL-EAIKEQGLTITGPDGDETVQPPIVISAPSADA-GPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHHH-HHHHHHCEEEEETTEEEEEEEEEEESSHGHHH-STESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEccccH-HhhhheeEEEEecccceecccccccCcchhcc-CCCcEEEEEecc
Confidence 456799 889999999998888886544433310 11 1111 11111121111 269999999999
Q ss_pred hhHHHHHHHHHHcCCc--EEEEecCCCChh
Q 019500 110 PFAAAAILEAMEAELD--LVVCITEGIPQH 137 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk--~vvi~t~Gf~e~ 137 (340)
....++++.+...--+ .++.++.|+...
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHH
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcH
Confidence 9999999986655433 578889998644
No 196
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.20 E-value=0.42 Score=47.04 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV 91 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl 91 (340)
++|+|.|. ||||+.+.+.+.+. .+++++..+|...- ++ +.| ++++ +++
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 68999999 99999999987765 57877655543110 11 123 2233 257
Q ss_pred HHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 92 AEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
++++=. ++|+|+.|+......+.....++.|++.+++ |+
T Consensus 82 ~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i-Sa 120 (334)
T PRK08955 82 ADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV-TA 120 (334)
T ss_pred hhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE-CC
Confidence 777654 7999999999999999999999999998664 43
No 197
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.10 E-value=0.65 Score=45.78 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=56.3
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c------ee--cCcccccCHHHhhccCCCcEEEEecCh-
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T------EH--LGLPVFNTVAEAKAETKANASAIYVPP- 109 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~------~i--~G~p~y~sl~dip~~~~vDlavi~vp~- 109 (340)
.+..+|+|.|++|..|+.+++.|.+.|++++...+....- . +. ..+.-..++.++.. ++|.++-+...
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~Aa~~ 96 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLAADM 96 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEEccccc
Confidence 4566889999999999999999999999877443221100 0 00 11111122333343 58988877521
Q ss_pred ------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 ------------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 ------------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
.....+++.|.+.+++.+|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 97 GGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred CCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 12345777788889988776665
No 198
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=92.94 E-value=0.6 Score=46.09 Aligned_cols=115 Identities=11% Similarity=0.132 Sum_probs=78.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAM 120 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~ 120 (340)
..+|.|+|. |+||+..++.+.+.|+.+++-=-+.+.. .+-.|..-|..+.|+.+. .+|+++.||.......++....
T Consensus 52 tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiekilatyp 129 (480)
T KOG2380|consen 52 TLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEKILATYP 129 (480)
T ss_pred ceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHHHHHhcC
Confidence 445667799 9999999999999999877433344410 134678889999998875 6999999999999988887654
Q ss_pred H--cCCcEEEEecCCCChhhHHHHHHHHhccCCcE----EEccC
Q 019500 121 E--AELDLVVCITEGIPQHDMVRVKAALNNQSKTR----LVGPN 158 (340)
Q Consensus 121 ~--~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir----viGPN 158 (340)
= ..+..+++-..-..+-+...+.+.+-++..|. +-||.
T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk 173 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK 173 (480)
T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC
Confidence 2 33445554444444445555555543444443 45776
No 199
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.86 E-value=0.59 Score=46.84 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=58.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-c-----------------CcccccC--HHHhhccCCCcE
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-L-----------------GLPVFNT--VAEAKAETKANA 102 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-~-----------------G~p~y~s--l~dip~~~~vDl 102 (340)
+|.|+|. |.+|...+..+. .|++++ ++|.+... +.+ . +.....+ .++... +.|+
T Consensus 2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad~ 76 (388)
T PRK15057 2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DADY 76 (388)
T ss_pred EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCCE
Confidence 5677799 999988885555 588865 55543310 000 1 1122122 445444 5899
Q ss_pred EEEecChh-----------hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 103 SAIYVPPP-----------FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 103 avi~vp~~-----------~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+++++|.. .+.++++...+..-+.+++..|=++....+++.+.+ ++.++.. +|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~-~~~~v~~-~PE 141 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKY-RTENIIF-SPE 141 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHh-hcCcEEE-Ccc
Confidence 99999964 444555555543223345555555544445555444 3444433 444
No 200
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.78 E-value=0.72 Score=42.54 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=64.0
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC----Cc----------eecCcccccC-----HHHhhccCCC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG----GT----------EHLGLPVFNT-----VAEAKAETKA 100 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~----g~----------~i~G~p~y~s-----l~dip~~~~v 100 (340)
.+..+|+|+|. |+.|+..++.|.+.|.++++..|.+.. |- +..++..|+. -+++.. .++
T Consensus 21 l~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 98 (217)
T cd05211 21 LEGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDV 98 (217)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-ccc
Confidence 34568889999 999999999999999988876554320 00 1123333331 123333 268
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCC
Q 019500 101 NASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNC 159 (340)
Q Consensus 101 Dlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc 159 (340)
|+++-|.+.... .-+.+.+.++|.++-.+.+--..+..+ .+ ++.|+.++ |..
T Consensus 99 DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~---~L-~~~Gi~v~-Pd~ 150 (217)
T cd05211 99 DIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALR---IL-HERGIVVA-PDI 150 (217)
T ss_pred cEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHH---HH-HHCCcEEE-ChH
Confidence 999988876643 334455667777553333321223222 22 45676554 653
No 201
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.77 E-value=1.3 Score=41.71 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCeEEEEeCCC--CCcchHHHHHHHHcCCeEEEeeCCCCC-Cc-----------eecCcccccCHHHhhccCCCcEEEEe
Q 019500 41 KNTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKKG-GT-----------EHLGLPVFNTVAEAKAETKANASAIY 106 (340)
Q Consensus 41 ~~iaViVvGas--gk~G~~v~~~l~~~G~~vv~~VnP~~~-g~-----------~i~G~p~y~sl~dip~~~~vDlavi~ 106 (340)
.+++||++..+ |++| .+++.|+++|+.-.+.|||+.. .+ -+.+.++|++|+|... ++|+++-+
T Consensus 3 ~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~--d~~~v~aT 79 (242)
T COG0565 3 ENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALA--DCDLVVAT 79 (242)
T ss_pred CccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhc--CCCEEEEe
Confidence 36788888874 4555 4678999999986669999873 11 1467788888888886 57777755
Q ss_pred c
Q 019500 107 V 107 (340)
Q Consensus 107 v 107 (340)
+
T Consensus 80 t 80 (242)
T COG0565 80 T 80 (242)
T ss_pred c
Confidence 4
No 202
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=92.77 E-value=0.73 Score=42.66 Aligned_cols=105 Identities=17% Similarity=0.069 Sum_probs=67.5
Q ss_pred CCCcchHHHHHHHHc-CCe-EEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEE-ecChhhHHHHHHHHHHcCCcEE
Q 019500 51 TGKNGTFHTEQAIEY-GTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI-YVPPPFAAAAILEAMEAELDLV 127 (340)
Q Consensus 51 sgk~G~~v~~~l~~~-G~~-vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi-~vp~~~v~~~v~ea~~~Gvk~v 127 (340)
+|+.|....+++.++ .+. .+..++....-.++-..| ..-|.++++ .|++|. ..+|+...++.+.|.+.|++++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~~---~Dl~I~y~lHPDl~~~l~~~~~e~g~kav 80 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIPE---ADLLIAYGLHPDLTYELPEIAKEAGVKAV 80 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCCC---CCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence 477899999999886 455 232444221102211112 112444553 799998 6799999999999999999996
Q ss_pred EEecCCCChhh-HHHHHHHHhccCCcEEEccCCCC
Q 019500 128 VCITEGIPQHD-MVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 128 vi~t~Gf~e~~-~~~l~~~aar~~girviGPNc~G 161 (340)
|+ ..+-+..+ ..++.+.+ ++.|+.+.-|.-+=
T Consensus 81 Iv-p~~~~~~g~~~~lk~~~-e~~gi~~~~P~~~C 113 (217)
T PF02593_consen 81 IV-PSESPKPGLRRQLKKQL-EEFGIEVEFPKPFC 113 (217)
T ss_pred EE-ecCCCccchHHHHHHHH-HhcCceeecCcccc
Confidence 54 44444422 33455555 78999999888443
No 203
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.50 E-value=0.32 Score=46.67 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=68.2
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCcccccCHHHhhccCCCcEEEEecChhh-
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKKGG-T---EHLGLPVFNTVAEAKAETKANASAIYVPPPF- 111 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~~g-~---~i~G~p~y~sl~dip~~~~vDlavi~vp~~~- 111 (340)
.|| +|+|+|. +.|..-...+... +|++.....-.... . .-.|+|.|.+++++|+ .+|++-+.+-...
T Consensus 3 ~pk--sVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd--~idiACVvVrsai~ 76 (361)
T COG4693 3 DPK--SVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPD--DIDIACVVVRSAIV 76 (361)
T ss_pred CCc--eEEEecc--hHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCC--CCCeEEEEEeeeee
Confidence 355 5677784 6787766655543 77766333221100 1 2489999999999998 6999988775543
Q ss_pred ---HHHHHHHHHHcCCcEEEEecCC-CChhhHHHHHHHHhccCCcEEE
Q 019500 112 ---AAAAILEAMEAELDLVVCITEG-IPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 112 ---v~~~v~ea~~~Gvk~vvi~t~G-f~e~~~~~l~~~aar~~girvi 155 (340)
-.+..+..+++||+. +++. .-.+|..++.+.+ ++.|-+..
T Consensus 77 Gg~Gs~larall~RGi~V---lqEHPl~p~di~~l~rlA-~rqG~~y~ 120 (361)
T COG4693 77 GGQGSALARALLARGIHV---LQEHPLHPRDIQDLLRLA-ERQGRRYL 120 (361)
T ss_pred cCCcHHHHHHHHHcccHH---HHhCCCCHHHHHHHHHHH-HHhCcEEE
Confidence 366788888889886 3332 3345666666655 55665543
No 204
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.42 E-value=0.56 Score=48.85 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=49.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecChh-hHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPPP-FAAAAI 116 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~~-~v~~~v 116 (340)
.|.|+|. |++|+.+++.+..+|++++ .+||....+ .-.|++.. +++++.. ..|++++++|.. ....++
T Consensus 142 tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~--~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 142 TLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLA--RADFITLHTPLTPETRGLI 212 (526)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHh--hCCEEEEccCCChHhhcCc
Confidence 4566699 9999999999999999866 678743101 23455544 8999987 589999999974 333333
No 205
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.38 E-value=2.9 Score=39.05 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC--CeEEEeeC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVT 74 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G--~~vv~~Vn 74 (340)
+|+|.|++|.+|+.+++.|.+.| ++++ .++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence 36788999999999999998876 6666 444
No 206
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=92.33 E-value=0.34 Score=41.85 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~ 276 (340)
+.+.|+.+.+||+++.|++++.+.|.....+.++.++++ .+|||+++--|....
T Consensus 16 l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s 70 (161)
T cd00394 16 LAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAAS 70 (161)
T ss_pred HHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence 566777888999999999999987666667777777765 569999998876543
No 207
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.31 E-value=0.54 Score=42.78 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=29.8
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.-+.-+|+|+|+ |++|...++.|.+.|.++. .|+|..
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL 43 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 334557888899 9999999999999998765 788865
No 208
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.22 E-value=0.56 Score=43.15 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=64.2
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCC----eEEEeeCCCCCCc---eecCcccccC----HHHhhccCCCcEEEEecC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGT----KMVGGVTPKKGGT---EHLGLPVFNT----VAEAKAETKANASAIYVP 108 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~----~vv~~VnP~~~g~---~i~G~p~y~s----l~dip~~~~vDlavi~vp 108 (340)
++..+|.|+|- |++|+-++-.+++.|- ...-++||..+|- .-.|++.-.. |-.+|+..++|++..++.
T Consensus 2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 45667888896 9999887666665542 2333799987542 2356654432 444565456889999999
Q ss_pred hhhHHHHHHHHHHcCCcEEEEecC
Q 019500 109 PPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 109 ~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+-.+.+......+.|++. +-+|+
T Consensus 81 a~~h~~~a~~~ae~gi~~-idltp 103 (310)
T COG4569 81 AGAHVKNAAALAEAGIRL-IDLTP 103 (310)
T ss_pred cchhhcchHhHHhcCCce-eecch
Confidence 999999999999999998 44564
No 209
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.92 E-value=1.2 Score=42.67 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
+|+|.|++|..|+.+++.|.+.|++++..
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 57889999999999999999999997643
No 210
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.74 E-value=0.71 Score=43.72 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=51.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---ecCcccc------cCHHHhhccCCCcEEEEecChhh---
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---HLGLPVF------NTVAEAKAETKANASAIYVPPPF--- 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---i~G~p~y------~sl~dip~~~~vDlavi~vp~~~--- 111 (340)
+|.|.|.++- |+.+++.|.+.|+++++-+--.++.+. ..+.+++ .++.+...++++|++|++++|-+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~i 80 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQI 80 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHH
Confidence 5778899775 999999999999986654332221111 1123333 23544444456888888887743
Q ss_pred HHHHHHHHHHcCCcEE
Q 019500 112 AAAAILEAMEAELDLV 127 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~v 127 (340)
...+.+.|.+.|++.+
T Consensus 81 s~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 81 TTNATAVCKELGIPYV 96 (256)
T ss_pred HHHHHHHHHHhCCcEE
Confidence 3456666777777764
No 211
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.67 E-value=0.6 Score=39.49 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=61.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-e----------cCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-H----------LGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i----------~G~p~y~sl~dip~~~~vDlavi~vp~~~v 112 (340)
+|+|+|+ |.+|..++++|...|+.-+..+|+..-..+ + .|.+--..+.+...+..+++-+-..+....
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 3677899 899999999999999875558887642111 1 122111112222222234444444433322
Q ss_pred HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
.+...+.. .+... |+.+... ......+.+.+ +++++.++...+.|.
T Consensus 80 ~~~~~~~~-~~~di-Vi~~~d~-~~~~~~l~~~~-~~~~i~~i~~~~~g~ 125 (143)
T cd01483 80 EDNLDDFL-DGVDL-VIDAIDN-IAVRRALNRAC-KELGIPVIDAGGLGL 125 (143)
T ss_pred hhhHHHHh-cCCCE-EEECCCC-HHHHHHHHHHH-HHcCCCEEEEcCCCc
Confidence 22222222 24554 3334333 33344555665 788888887777663
No 212
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.65 E-value=0.81 Score=42.42 Aligned_cols=85 Identities=20% Similarity=0.121 Sum_probs=49.9
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee--cCcccc--cCHHHhhccCCCcEEEEecChh---------
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH--LGLPVF--NTVAEAKAETKANASAIYVPPP--------- 110 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i--~G~p~y--~sl~dip~~~~vDlavi~vp~~--------- 110 (340)
|+|.|++|..|+.+++.|.+.|++++.. +.+... ... .++..+ ..+.+... ++|.++-+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~ 77 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTIL-TRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE 77 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEE-eCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence 4578999999999999999999997643 322210 111 111111 12222222 589888776321
Q ss_pred -----------hHHHHHHHHHHcCCc-EEEEecC
Q 019500 111 -----------FAAAAILEAMEAELD-LVVCITE 132 (340)
Q Consensus 111 -----------~v~~~v~ea~~~Gvk-~vvi~t~ 132 (340)
.+..+++.|.+.|++ .+++.++
T Consensus 78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 145566777788874 4455454
No 213
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.62 E-value=0.95 Score=47.70 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=52.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCCcee-----------cC------cccc-------cCHHHhhccC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEH-----------LG------LPVF-------NTVAEAKAET 98 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g~~i-----------~G------~p~y-------~sl~dip~~~ 98 (340)
.|+|.|++|.+|+.+++.|.+.|++++..+ |+... ..+ .| +.++ .++.+...
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg-- 158 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG-- 158 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc--
Confidence 367889999999999999999999866432 22110 000 01 1111 12333333
Q ss_pred CCcEEEEecChh----------------hHHHHHHHHHHcCCcEEEEecC
Q 019500 99 KANASAIYVPPP----------------FAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 99 ~vDlavi~vp~~----------------~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
++|++|.+.... ....+++.|.+.|++.+|++++
T Consensus 159 giDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 159 NASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred CCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 589888765321 2455677777788888777776
No 214
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.62 E-value=1.5 Score=40.49 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=54.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c----eecCcccc-cCHHHhhccCCCcEEEEecChhhHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T----EHLGLPVF-NTVAEAKAETKANASAIYVPPPFAAAAIL 117 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~----~i~G~p~y-~sl~dip~~~~vDlavi~vp~~~v~~~v~ 117 (340)
.+.|+|+ |++|..+.+.+.+.|++++.. +.+... . +..+..+- .+.+|..+ ..|++++++|-+.++++++
T Consensus 3 ~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~--~aDVVvLAVP~~a~~~v~~ 78 (211)
T COG2085 3 IIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAA--LADVVVLAVPFEAIPDVLA 78 (211)
T ss_pred EEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHh--cCCEEEEeccHHHHHhHHH
Confidence 3455677 999999999999999997633 222210 0 12222222 24555554 4899999999999999999
Q ss_pred HHHH-cCCcEEE
Q 019500 118 EAME-AELDLVV 128 (340)
Q Consensus 118 ea~~-~Gvk~vv 128 (340)
+..+ .+=|.+|
T Consensus 79 ~l~~~~~~KIvI 90 (211)
T COG2085 79 ELRDALGGKIVI 90 (211)
T ss_pred HHHHHhCCeEEE
Confidence 9987 3535444
No 215
>PLN02928 oxidoreductase family protein
Probab=91.62 E-value=1.4 Score=43.52 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec---------------CcccccCHHHhhccCCCcEEEEec
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---------------GLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~---------------G~p~y~sl~dip~~~~vDlavi~v 107 (340)
.+|.|+|. |++|+.+++.+..+|++++ .+||........ +. -+.+++++.. ..|++++++
T Consensus 160 ktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~--~aDiVvl~l 234 (347)
T PLN02928 160 KTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG--EADIVVLCC 234 (347)
T ss_pred CEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHh--hCCEEEECC
Confidence 35667799 9999999999999999876 677752101100 11 3568999986 489999999
Q ss_pred Ch
Q 019500 108 PP 109 (340)
Q Consensus 108 p~ 109 (340)
|-
T Consensus 235 Pl 236 (347)
T PLN02928 235 TL 236 (347)
T ss_pred CC
Confidence 84
No 216
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=91.60 E-value=0.61 Score=38.33 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=45.2
Q ss_pred EEEeCCCCCcchHHHHHHHHc-CCeEEEeeC-CCCCCcee---cC-cc--cccCH--HHhhccCCCcEEEEecChhhHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PKKGGTEH---LG-LP--VFNTV--AEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn-P~~~g~~i---~G-~p--~y~sl--~dip~~~~vDlavi~vp~~~v~~ 114 (340)
+.++|++|.+|+.+++.+.+. ++++++.+. ++..++.. .+ +. .+..+ .++.. .+.|++++++|++.+.+
T Consensus 2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 2 VAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE-LAVDIVFLALPHGVSKE 80 (122)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh-cCCCEEEEcCCcHHHHH
Confidence 567799899999999988885 888665533 32212221 11 11 11111 22221 25899999999999999
Q ss_pred HHHH
Q 019500 115 AILE 118 (340)
Q Consensus 115 ~v~e 118 (340)
.+..
T Consensus 81 ~~~~ 84 (122)
T smart00859 81 IAPL 84 (122)
T ss_pred HHHH
Confidence 7653
No 217
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.60 E-value=0.4 Score=46.38 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCccc--ccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPV--FNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~--y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
...+|+|+|+ |.+|..+++.+...|...+..+|+.... .+ -.|..+ +.++.+... ..|+++.++|.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~--~aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLN--EADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHh--cCCEEEECCCCCchHH
Confidence 3556888899 9999999999988776655578876411 11 123222 223444433 4899999999877756
Q ss_pred HHHHHHHc
Q 019500 115 AILEAMEA 122 (340)
Q Consensus 115 ~v~ea~~~ 122 (340)
.++++.+.
T Consensus 254 ~~~~~~~~ 261 (311)
T cd05213 254 IVERAMKK 261 (311)
T ss_pred HHHHHHhh
Confidence 66665544
No 218
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.58 E-value=0.64 Score=42.97 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=54.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----------ecCccccc-CHHHhhccCCCcEEEEecChhh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----------HLGLPVFN-TVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----------i~G~p~y~-sl~dip~~~~vDlavi~vp~~~ 111 (340)
+++|+|+ |+.|+.+++.|.+.|++++ .|+.+..- .+ +.|-...+ .|.++-- .+.|+++.++..+.
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d~ 78 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGNDE 78 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCCH
Confidence 5788899 9999999999999999966 44332210 11 11222222 2555532 26899999999877
Q ss_pred HHHHHHHHHH--cCCcEEEEe
Q 019500 112 AAAAILEAME--AELDLVVCI 130 (340)
Q Consensus 112 v~~~v~ea~~--~Gvk~vvi~ 130 (340)
+--++-..+. .|++.+|.-
T Consensus 79 ~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 79 VNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred HHHHHHHHHHHhcCCCcEEEE
Confidence 7665555553 489887643
No 219
>PLN02214 cinnamoyl-CoA reductase
Probab=91.56 E-value=1.5 Score=42.62 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCC-----------cee----cCcccccCHHHhhccCCCcEEE
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGG-----------TEH----LGLPVFNTVAEAKAETKANASA 104 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g-----------~~i----~G~p~y~sl~dip~~~~vDlav 104 (340)
+..+|+|.|++|-.|+.+++.|.+.|++++..+. +.... ..+ ..+.-..+++++.. .+|.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence 3446888999999999999999999998764432 21100 000 11111223444444 488888
Q ss_pred EecCh-------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 105 IYVPP-------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 105 i~vp~-------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
-+..+ .....+++.|.+.|++.+|.+++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 77632 12345677888889987776665
No 220
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.56 E-value=1.7 Score=40.16 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=69.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCC-CCCCceecCcccccCHHHhhccCCCcEEEEe-cChhhHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTK--MVGGVTP-KKGGTEHLGLPVFNTVAEAKAETKANASAIY-VPPPFAAAAILE 118 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP-~~~g~~i~G~p~y~sl~dip~~~~vDlavi~-vp~~~v~~~v~e 118 (340)
++|+|+.- |..|....+|+...+|. +++...+ ......+.- | ..-|..+| +.|++|-. .+|+....+.+.
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe~~~~fie~-P-~~~Lp~~~---e~Di~va~~lHPDl~~~L~e~ 75 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPEELPDFIEE-P-EDLLPKLP---EADIVVAYGLHPDLLLALPEK 75 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceEEEEeccccccchhhC-H-HHhcCCCC---CCCEEEEeccCccHHHHHHHH
Confidence 56777776 89999999999876653 5544333 221111110 0 11122223 48999987 799999999999
Q ss_pred HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500 119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~ 160 (340)
+.+.|++++| +.++-++.-..+|.+.+ .+.|+.+.-|.-+
T Consensus 76 ~~~~~~~alI-vp~~~~~g~rkqL~~~~-~~~g~e~~~p~p~ 115 (224)
T COG1810 76 AAEGGVKALI-VPAEPPEGLRKQLKEFC-EELGVEFEAPEPF 115 (224)
T ss_pred HHhCCccEEE-EecCCChhHHHHHHHHh-hhcceeeecCCcc
Confidence 9999999966 44444432244565555 6778887665543
No 221
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.55 E-value=0.61 Score=46.01 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCc---------eecC---------------------ccccc
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---------EHLG---------------------LPVFN 89 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~---------~i~G---------------------~p~y~ 89 (340)
+.++|.|+|+ |++|+.+.+.+.+. +.++++..+|...-+ ++.| ++++.
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~ 82 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 82 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEE
Confidence 3579999999 99999999987764 677776555532101 1111 11111
Q ss_pred --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500 90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
+.+++|= +.++|+|+.|+......+.+...+++|++.++ ++
T Consensus 83 ~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi-iS 126 (338)
T PLN02358 83 IRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV-IS 126 (338)
T ss_pred cCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEE-eC
Confidence 1224431 13699999999999999999999999998855 45
No 222
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=91.55 E-value=1.1 Score=45.43 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=40.6
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee-cCcc----------------ccc-CHHHhhccC
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH-LGLP----------------VFN-TVAEAKAET 98 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i-~G~p----------------~y~-sl~dip~~~ 98 (340)
|.-..++|.|+|. |.+|.-.+.++.+ +++++ ++|.+... +.+ .|.. .+. +.+. ..
T Consensus 2 ~~~~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~-~~-- 75 (425)
T PRK15182 2 FGIDEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEK-IK-- 75 (425)
T ss_pred CCCCCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHH-Hc--
Confidence 3334467888899 9999988888766 68855 54443310 111 2221 222 3333 33
Q ss_pred CCcEEEEecChh
Q 019500 99 KANASAIYVPPP 110 (340)
Q Consensus 99 ~vDlavi~vp~~ 110 (340)
+.|++++|+|..
T Consensus 76 ~advvii~Vptp 87 (425)
T PRK15182 76 ECNFYIITVPTP 87 (425)
T ss_pred CCCEEEEEcCCC
Confidence 589999999965
No 223
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.63 Score=45.74 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=79.3
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCe-EEEeeCCCCC-------CceecCcccc-c-CHHHhhccCCCcEEEEecC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTK-MVGGVTPKKG-------GTEHLGLPVF-N-TVAEAKAETKANASAIYVP 108 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~-vv~~VnP~~~-------g~~i~G~p~y-~-sl~dip~~~~vDlavi~vp 108 (340)
+++..-++|.||+|-.|..+++.+...|.+ .+++=|+.+- |.+..-.|+. + .++++.+ ..++++=|+-
T Consensus 3 ~e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvG 80 (382)
T COG3268 3 MEREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVG 80 (382)
T ss_pred CCcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh--cceEEEeccc
Confidence 355566788999999999999999988876 4444333210 1111122333 2 3556655 5899999998
Q ss_pred h--hhHHHHHHHHHHcCCcEEEEecCCCC-hhhHHHH-HHHHhccCCcEEEccCCCCccc-CCCc
Q 019500 109 P--PFAAAAILEAMEAELDLVVCITEGIP-QHDMVRV-KAALNNQSKTRLVGPNCPGVIK-PGEC 168 (340)
Q Consensus 109 ~--~~v~~~v~ea~~~Gvk~vvi~t~Gf~-e~~~~~l-~~~aar~~girviGPNc~Gi~~-p~~~ 168 (340)
| .....+++.|++.|.+.+ -+|.-+. -+....+ .+.+ ++.|++|+ +|-||=+ |..+
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~-DiTGEi~~fe~~i~~yh~~A-~~~Ga~Ii--~~cGFDsIPsDl 141 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYA-DITGEIMFFENSIDLYHAQA-ADAGARII--PGCGFDSIPSDL 141 (382)
T ss_pred cccccccHHHHHHHHhCCCee-eccccHHHHHHHHHHHHHHH-HhcCCEEe--ccCCCCcCccch
Confidence 7 455789999999999984 3454221 0222333 3333 78999999 7888743 4433
No 224
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.48 E-value=0.49 Score=49.09 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=42.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e--------e-cC-------------cccccCHHHhhcc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E--------H-LG-------------LPVFNTVAEAKAE 97 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~--------i-~G-------------~p~y~sl~dip~~ 97 (340)
+|.|+|+ |.||+.++.++.+.|++++ +-++|..-.. . + .| +..-.+++++.
T Consensus 7 kV~VIGa-G~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~-- 83 (503)
T TIGR02279 7 TVAVIGA-GAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA-- 83 (503)
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC--
Confidence 3566699 9999999999999999854 3344332100 0 0 12 23455777764
Q ss_pred CCCcEEEEecChhhH
Q 019500 98 TKANASAIYVPPPFA 112 (340)
Q Consensus 98 ~~vDlavi~vp~~~v 112 (340)
+.|++|-++|.+..
T Consensus 84 -~aDlVIEav~E~~~ 97 (503)
T TIGR02279 84 -DAGLVIEAIVENLE 97 (503)
T ss_pred -CCCEEEEcCcCcHH
Confidence 48999999997443
No 225
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=91.47 E-value=0.43 Score=43.63 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=43.0
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCC
Q 019500 221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAP 276 (340)
Q Consensus 221 v~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~ 276 (340)
-++.+.|+.+.+||++++|++.+++.|.......++.++++ .+||||++--|-...
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s 86 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAAS 86 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhh
Confidence 45677788889999999999999987755555566666554 369999999885443
No 226
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.33 E-value=0.96 Score=42.10 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=51.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-------------
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP------------- 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~------------- 110 (340)
+|+|.|++|..|+.+++.|.+.|++++ .++... .+ +.-..++.++.+..++|.++-+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~--~d---~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ--LD---LTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc--cC---CCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 367889999999999999999999876 444332 11 22223455555433579988766321
Q ss_pred -----hHHHHHHHHHHcCCcEEEEecC
Q 019500 111 -----FAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 111 -----~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
....+++.|.+.+.+. |.+++
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss 100 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARL-VHIST 100 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence 1344555666677654 44454
No 227
>PRK06813 homoserine dehydrogenase; Validated
Probab=91.30 E-value=1.3 Score=43.78 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=64.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHH--------cCCe--EEEeeCCCCCCceecCccc---------------c-c-CHHHh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIE--------YGTK--MVGGVTPKKGGTEHLGLPV---------------F-N-TVAEA 94 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~--------~G~~--vv~~VnP~~~g~~i~G~p~---------------y-~-sl~di 94 (340)
.++|+++|. |..|+.+++.|.+ +|.+ +++..|.+..-..-.|++. | . +..++
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 468889998 9999888876542 3443 5555554321000112211 1 1 11122
Q ss_pred h-ccCCCcEEEEecCh-----hhHHHHHHHHHHcCCcEEEEecCC--CChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 95 K-AETKANASAIYVPP-----PFAAAAILEAMEAELDLVVCITEG--IPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 95 p-~~~~vDlavi~vp~-----~~v~~~v~ea~~~Gvk~vvi~t~G--f~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
. .+.++|++|.++|. +...+.+++++++|++. | |+. .-.....+|.+.+ +++|..+.=--+.|
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hV-V--TANK~~la~~~~eL~~lA-~~~g~~~~yEasVg 151 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDI-V--AISKGALVTNWREINEAA-KIANVRIRYSGATA 151 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeE-E--cCCcHHHhccHHHHHHHH-HHcCCeEEEeeeee
Confidence 1 11148999999986 45677889999999986 2 442 1112235666665 78887766333333
No 228
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=91.24 E-value=0.92 Score=44.71 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV 91 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl 91 (340)
++|.|.|. |++|+.+.|.+.+. ++++++.-+|...- ++ +.| +++| ++.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 58899999 99999999987654 57777433332100 11 233 3455 368
Q ss_pred HHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 92 AEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 92 ~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+++| .+.++|+|+.|+......+.....++.|++.++ +|+
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~-iSa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVI-MSA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEE-eCC
Confidence 8888 234799999999999999999999999999855 555
No 229
>PRK08223 hypothetical protein; Validated
Probab=91.13 E-value=1.2 Score=43.08 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=62.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccccc-----------CHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~-----------sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |..|..++.+|...|..-+..+|...-..+-.....+- ..++-..+.++++=|...+..
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 445777799 88999999999999987555777654211111111111 112222222455555555544
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
...+.+++.++ +...++-.+..|+-+....+-+.| +++|+.++-..+.|
T Consensus 106 l~~~n~~~ll~-~~DlVvD~~D~~~~~~r~~ln~~c-~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IGKENADAFLD-GVDVYVDGLDFFEFDARRLVFAAC-QQRGIPALTAAPLG 154 (287)
T ss_pred cCccCHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHcCCCEEEEeccC
Confidence 44445555553 566654333333222233344444 77888877666655
No 230
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=90.96 E-value=1.3 Score=41.56 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=55.6
Q ss_pred EeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC-----------hh-----
Q 019500 47 CQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP-----------PP----- 110 (340)
Q Consensus 47 VvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp-----------~~----- 110 (340)
|.|++|-+|+.+++.|.+.|++++...+... ..+.-+.+++++.+..++|.+|-+.. +.
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~ 76 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRE 76 (306)
T ss_pred cccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHH
Confidence 5699999999999999999988663332221 23344556777765556898887641 11
Q ss_pred ---hHHHHHHHHHHcCCcEEEEecC
Q 019500 111 ---FAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 111 ---~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
....+++.|.+.+++.+|.+++
T Consensus 77 n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 77 NLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2445788888889987776665
No 231
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=90.94 E-value=0.55 Score=46.18 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=97.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc--C---Ce---EEEe---------------eC-----CCCC-C-ceecCcccccCH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY--G---TK---MVGG---------------VT-----PKKG-G-TEHLGLPVFNTV 91 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~--G---~~---vv~~---------------Vn-----P~~~-g-~~i~G~p~y~sl 91 (340)
+.+|+|+|. |++|+.+++.+.+. . |+ ..+. +| +||- | +--..+.+.+++
T Consensus 21 ~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 578888898 99999988765542 1 11 1111 11 1110 0 001234455677
Q ss_pred HHhhccCCCcEEEEecChhhHHHHHHHHHH---cCCcEEEEecCCCCh--hh--HHHHHHHHhccCCcE---EEccCCCC
Q 019500 92 AEAKAETKANASAIYVPPPFAAAAILEAME---AELDLVVCITEGIPQ--HD--MVRVKAALNNQSKTR---LVGPNCPG 161 (340)
Q Consensus 92 ~dip~~~~vDlavi~vp~~~v~~~v~ea~~---~Gvk~vvi~t~Gf~e--~~--~~~l~~~aar~~gir---viGPNc~G 161 (340)
.+... +.|+.|..+|..+...+.++... .++.+ |=++-||.- ++ ..-+-+.+.++.|+. +.|||--.
T Consensus 100 ~ea~~--dADilvf~vPhQf~~~ic~~l~g~vk~~~~a-ISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 100 VEAAK--DADILVFVVPHQFIPRICEQLKGYVKPGATA-ISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS 176 (372)
T ss_pred HHHhc--cCCEEEEeCChhhHHHHHHHHhcccCCCCeE-EEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHH
Confidence 77665 58999999999999988888764 46666 446778852 22 222333444556654 67888543
Q ss_pred -cccCC--CcccccCCCCC--------CCCCcEEEEecChHHHHHHHHHHH---hCCCCceEEeecCCCC---CCCCCHH
Q 019500 162 -VIKPG--ECKIGIMPGYI--------HKPGRIGIVSRSGTLTYEAVFQTT---AVGLGQSTCVGIGGDP---FNGTNFV 224 (340)
Q Consensus 162 -i~~p~--~~~~~~~~~~~--------~~~G~valvSQSG~l~~~~~~~~~---~~giG~S~~vs~Gn~a---~~dv~~~ 224 (340)
+.+-. ...++..+... +..-..=+..++-.-+.++...+. .-+-||.--...||.. +.-..+.
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~ 256 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL 256 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence 33322 22233321100 111223344444444444433222 2356787777777742 2234455
Q ss_pred HHHHHh
Q 019500 225 DCVTKF 230 (340)
Q Consensus 225 d~l~~l 230 (340)
|.+.|.
T Consensus 257 Em~~F~ 262 (372)
T KOG2711|consen 257 EMIKFA 262 (372)
T ss_pred HHHHHH
Confidence 555443
No 232
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=90.93 E-value=0.69 Score=41.97 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=41.1
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHh---C-CCCCEEEEEeCCCCC
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKES---G-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~---r-~~KPVvvlk~Grs~~ 276 (340)
.+.+.|+.+.+||+.++|++++.+.|........+.+++ + .+|||+++--|....
T Consensus 21 ~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s 79 (208)
T cd07023 21 SLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAAS 79 (208)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchh
Confidence 466777888899999999999998776555544444433 3 589999999886543
No 233
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=90.93 E-value=1.7 Score=43.68 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=54.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHc--CCeEEEee-CCCCCC------------ceecC---------------ccccc---C
Q 019500 44 RVICQGITGKNGTFHTEQAIEY--GTKMVGGV-TPKKGG------------TEHLG---------------LPVFN---T 90 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~--G~~vv~~V-nP~~~g------------~~i~G---------------~p~y~---s 90 (340)
+|+|+|++|..|+.+++.+.++ .|++++.+ +.+... --+.. .+++. .
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~ 82 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEEG 82 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChhH
Confidence 4666799999999988877765 57777553 222100 00111 11221 3
Q ss_pred HHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEE
Q 019500 91 VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLV 127 (340)
Q Consensus 91 l~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~v 127 (340)
+.++.+..++|+++.+++......-..+|+++|.+.+
T Consensus 83 ~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 83 LCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred HHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 4444443358999999999877788889999997753
No 234
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=90.89 E-value=0.6 Score=42.62 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=41.0
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHH---HHhC-CCCCEEEEEeCCCC
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALI---KESG-TEKPIVAFIAGLTA 275 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~---~a~r-~~KPVvvlk~Grs~ 275 (340)
++.+.|+.+.+||+.++|+|.+.+.|.......++. +..+ .+||||++--|...
T Consensus 25 ~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 25 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 466778888999999999999998776555544443 3444 68999999988754
No 235
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.70 E-value=1.2 Score=43.03 Aligned_cols=114 Identities=16% Similarity=0.254 Sum_probs=68.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh-----------hccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA-----------KAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di-----------p~~~~vDlavi~vp~~ 110 (340)
+.+|+|+|+ |..|..+++||...|..-+..+|+..-..+-.+...|-+-+|+ ..+.++++-|......
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 556888899 7799999999999999866688876532222222222221111 1112456655555443
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
...+.+. +... |+.+.. +.+...++-+++ +++++.++--++.|+.-
T Consensus 98 ~~~~~l~-----~fdv-VV~~~~-~~~~~~~in~~c-~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 98 LTTDELL-----KFQV-VVLTDA-SLEDQLKINEFC-HSPGIKFISADTRGLFG 143 (286)
T ss_pred CCHHHHh-----cCCE-EEEecC-CHHHHHHHHHHH-HHcCCEEEEEeccccEE
Confidence 3333332 3444 445543 444555666666 78999999889888753
No 236
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.68 E-value=0.95 Score=37.96 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=63.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCccccc----------CHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFN----------TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~----------sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |..|..++++|...|..-+..+|+..-..+ +.-.+.|. .+.+...+..|++=+...+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 457888899 889999999999999864547776542111 11111111 122222222456666666666
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
...+..++.. .+...++. +..- .+....+.+.+ ++++++++--+..|
T Consensus 81 ~~~~~~~~~~-~~~d~vi~-~~d~-~~~~~~l~~~~-~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVID-CVDS-LAARLLLNEIC-REYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEE-ESSS-HHHHHHHHHHH-HHTT-EEEEEEEET
T ss_pred cccccccccc-cCCCEEEE-ecCC-HHHHHHHHHHH-HHcCCCEEEEEeec
Confidence 6556666666 46666443 3322 22233455555 78888877444333
No 237
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=90.67 E-value=0.67 Score=40.91 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.3
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHH---HHHhC-CCCCEEEEEeCCCCC
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAAL---IKESG-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f---~~a~r-~~KPVvvlk~Grs~~ 276 (340)
.+.+.++.+.+||++++|++.+.+.|.......++ ++..+ .+||||++--|....
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 45556666778999999999999876555444433 33343 689999999876654
No 238
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.65 E-value=0.61 Score=48.41 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=45.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc-e------------e-cC-------------cccccCHHHhhc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT-E------------H-LG-------------LPVFNTVAEAKA 96 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~-~------------i-~G-------------~p~y~sl~dip~ 96 (340)
+|.|+|+ |.||.-++.++...|++++ ..|++...- . + .| +..-.+++++.
T Consensus 9 ~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~- 85 (507)
T PRK08268 9 TVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA- 85 (507)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-
Confidence 4667799 9999999999999999854 444432100 1 0 13 34556777764
Q ss_pred cCCCcEEEEecChhhHHH
Q 019500 97 ETKANASAIYVPPPFAAA 114 (340)
Q Consensus 97 ~~~vDlavi~vp~~~v~~ 114 (340)
+.|++|-++|.+...+
T Consensus 86 --~aDlViEav~E~~~vK 101 (507)
T PRK08268 86 --DCDLVVEAIVERLDVK 101 (507)
T ss_pred --CCCEEEEcCcccHHHH
Confidence 4899999999866543
No 239
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=90.63 E-value=1.6 Score=40.88 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=52.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCC-Cc---eec---Ccccc-------cCHHHhhccCCCcEEEEecC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKG-GT---EHL---GLPVF-------NTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~-g~---~i~---G~p~y-------~sl~dip~~~~vDlavi~vp 108 (340)
+|+|.|++|..|+.+++.|.+.|++++ .++ +... .. .+. ++..+ .+++++....++|.++-+..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag 79 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVV-VLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG 79 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEE-EEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence 467889999999999999999999865 342 1110 00 111 12222 23444433235898886653
Q ss_pred h------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 109 P------------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 109 ~------------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
. .....+++.|.+.+++.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 2 12345566777778877766554
No 240
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.63 E-value=1.1 Score=45.36 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=59.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHH-HHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-ILE 118 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~-v~e 118 (340)
.-+|+|+|+ |+.|+.+++.++.+|.+++ +-++|...- ..-.|..+. ++++... ..|++|.++....+.+. .-.
T Consensus 195 Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~--~aDVVItaTG~~~vI~~~~~~ 270 (406)
T TIGR00936 195 GKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAK--IGDIFITATGNKDVIRGEHFE 270 (406)
T ss_pred cCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHh--cCCEEEECCCCHHHHHHHHHh
Confidence 336778899 9999999999999999844 335774310 123455443 4566654 58999998876554432 333
Q ss_pred HHHcCCcEEEEecCCCC-hhhHHHHHHHH
Q 019500 119 AMEAELDLVVCITEGIP-QHDMVRVKAAL 146 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~-e~~~~~l~~~a 146 (340)
+.+.|. +++.++.+. |-+...|.+.+
T Consensus 271 ~mK~Ga--iliN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 271 NMKDGA--IVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred cCCCCc--EEEEECCCCceeCHHHHHHHH
Confidence 333333 333444444 34556665543
No 241
>PRK12320 hypothetical protein; Provisional
Probab=90.61 E-value=1.3 Score=47.77 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=54.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc------cCHHHhhccCCCcEEEEecChh-------
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF------NTVAEAKAETKANASAIYVPPP------- 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y------~sl~dip~~~~vDlavi~vp~~------- 110 (340)
+|+|.|++|.+|+.+++.|.+.|++++...+.... ....++..+ +.+.++.. ++|.++-+.+..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~-~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v 78 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD-ALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV 78 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh-cccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence 68889999999999999999999997755442110 000111111 12444443 589999887632
Q ss_pred ---hHHHHHHHHHHcCCcEEEEecCC
Q 019500 111 ---FAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 111 ---~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
....+++.|.+.|++ +|.+++.
T Consensus 79 Nv~Gt~nLleAA~~~GvR-iV~~SS~ 103 (699)
T PRK12320 79 GITGLAHVANAAARAGAR-LLFVSQA 103 (699)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence 244567888888987 4445544
No 242
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.61 E-value=1.2 Score=40.36 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=59.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-----------CcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----------G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |.+|..++++|...|..-+..+|+..-..+-. |.+--..+.+-..+.++++-+...+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 445777799 88999999999999986555888764211111 111011111111122345555444443
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
...+.+++.. .+...++ .+.+-. +....+.+.+ ++++++++-..+.|
T Consensus 100 i~~~~~~~~~-~~~D~Vi-~~~d~~-~~r~~l~~~~-~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VTAENLELLI-NNVDLVL-DCTDNF-ATRYLINDAC-VALGTPLISAAVVG 146 (202)
T ss_pred CCHHHHHHHH-hCCCEEE-ECCCCH-HHHHHHHHHH-HHcCCCEEEEEecc
Confidence 3334444444 3555544 343321 2222344444 67777766555444
No 243
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.57 E-value=1.7 Score=40.92 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=53.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec--Cccc-------ccCHHHhhccCCCcEEEEecCh-----
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL--GLPV-------FNTVAEAKAETKANASAIYVPP----- 109 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~--G~p~-------y~sl~dip~~~~vDlavi~vp~----- 109 (340)
+|+|.|++|.+|+.+++.|.+.|++++...........+. ++.. ..++.++.+ .+|.++-+...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~~~~ 79 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYRLWA 79 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecccCC
Confidence 4778899999999999999999998664332211001111 2221 223445444 58888876532
Q ss_pred -----------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 -----------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 -----------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
.....+++.|.+.+++.+|..++
T Consensus 80 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 80 PDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11244567777888888776665
No 244
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.55 E-value=0.92 Score=44.74 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=59.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC---------ce-----------------ecC--ccccc-
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG---------TE-----------------HLG--LPVFN- 89 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y~- 89 (340)
+++|.|.|. |++|+.+.|.+.+. .++++ .||.-..- +. +.| ++++.
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vv-aind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELV-AINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSD 78 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEE-EecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEc
Confidence 368889999 99999999986643 46677 44431100 00 123 33443
Q ss_pred -CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 90 -TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 90 -sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+.+++|= +.++|+|+.|+......+.....++.|++.++ +|+
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~-iSa 122 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVL-ITA 122 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEE-eCC
Confidence 3466662 23699999999999999999999999999865 453
No 245
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.36 E-value=1.6 Score=40.15 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=28.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+.+|+|+|+ |..|..++++|...|..-+..+|+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 346777799 88999999999999987555777654
No 246
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.31 E-value=1.8 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 345777899 88999999999999986444666643
No 247
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=90.26 E-value=1.1 Score=42.72 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=52.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-cCcccccCHHHhhccCCCcEEEEecC----------hh--
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-LGLPVFNTVAEAKAETKANASAIYVP----------PP-- 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp----------~~-- 110 (340)
+|+|.|++|-.|+.+++.|.+.| +++ .++... ..+ ..+.-+..+.++.+..++|+++=+.- ++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFA 77 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHH
Confidence 68899999999999999998888 655 444322 111 23333445555554345898885431 11
Q ss_pred ------hHHHHHHHHHHcCCcEEEEecC
Q 019500 111 ------FAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 111 ------~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
....+++.|.+.|++. |.+|+
T Consensus 78 ~~~N~~~~~~l~~aa~~~g~~~-v~~Ss 104 (299)
T PRK09987 78 QLLNATSVEAIAKAANEVGAWV-VHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence 1345777788889874 44555
No 248
>PLN02240 UDP-glucose 4-epimerase
Probab=90.23 E-value=2.2 Score=41.02 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=53.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---------------ce---e-cCcccccCHHHhhccCCCcEEE
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---------------TE---H-LGLPVFNTVAEAKAETKANASA 104 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---------------~~---i-~G~p~y~sl~dip~~~~vDlav 104 (340)
+|+|.|++|..|+.+++.|.+.|++++...+..... .. + ..+.-..++.++.+...+|.++
T Consensus 7 ~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~vi 86 (352)
T PLN02240 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAVI 86 (352)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCEEE
Confidence 578889999999999999999999876432211100 00 0 1111112344443323589888
Q ss_pred EecCh------------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 105 IYVPP------------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 105 i~vp~------------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
-+... .....+++.|.+.+++.++.+++
T Consensus 87 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 87 HFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 87532 12335667777788887665554
No 249
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.90 E-value=1.2 Score=41.43 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.5
Q ss_pred CCCCCCCcccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 27 FTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 27 ~~~~~~~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
|.+....+.=+|..+..+|+|+|. |+.+..=++.|+++|.++. .|.|.-
T Consensus 10 ~~~~~~~~pi~l~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~Vt-VVap~i 58 (223)
T PRK05562 10 YNEENKYMFISLLSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVY-ILSKKF 58 (223)
T ss_pred hhccCCEeeeEEECCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCCC
Confidence 344433344445666778999998 7777666678888888755 788875
No 250
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=89.86 E-value=1.3 Score=43.97 Aligned_cols=86 Identities=13% Similarity=0.037 Sum_probs=57.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-----CCeEEEeeCCCCCC---------ce-------------------------ec
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPKKGG---------TE-------------------------HL 83 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-----G~~vv~~VnP~~~g---------~~-------------------------i~ 83 (340)
++|.|.|. |++|+.+.|.+.+. .+++++.-+|...- +. +.
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 68999999 99999999987763 46777544442100 01 12
Q ss_pred Cc--ccc---cCHHHhh-ccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEE
Q 019500 84 GL--PVF---NTVAEAK-AETKANASAIYVPPPFAAAAILEAMEAELDLVVC 129 (340)
Q Consensus 84 G~--p~y---~sl~dip-~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi 129 (340)
|. +++ ++.+++| .+.++|+++-|+-.-...+-+..-++.|+|.++|
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 32 333 3577777 2346899998887777777777777889988664
No 251
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.81 E-value=3.5 Score=35.75 Aligned_cols=96 Identities=17% Similarity=0.278 Sum_probs=58.6
Q ss_pred EeCCCC-CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHH
Q 019500 47 CQGITG-KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEA 119 (340)
Q Consensus 47 VvGasg-k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea 119 (340)
-.|..+ +.|..++. .|.+.||+++++ ..... +++ +.+..+ +++|++.++.-. +.++++++.|
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~l 87 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEAL 87 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHHHHHHHHH
Confidence 345433 45655554 556679997642 21111 111 223333 379999999855 5567788888
Q ss_pred HHcCCcEEEEecCCC-ChhhHHHHHHHHhccCCc-EEEccC
Q 019500 120 MEAELDLVVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPN 158 (340)
Q Consensus 120 ~~~Gvk~vvi~t~Gf-~e~~~~~l~~~aar~~gi-rviGPN 158 (340)
.++|...+.++..|. +.++..+++ ++|+ ++.+|.
T Consensus 88 re~G~~~i~v~~GGvip~~d~~~l~-----~~G~~~if~pg 123 (143)
T COG2185 88 REAGVEDILVVVGGVIPPGDYQELK-----EMGVDRIFGPG 123 (143)
T ss_pred HHhCCcceEEeecCccCchhHHHHH-----HhCcceeeCCC
Confidence 899999987677774 555555443 4564 588875
No 252
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=89.78 E-value=1.3 Score=44.48 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=62.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC---CeEEEeeCC-----------CC--------------CCc--eecC--ccccc
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG---TKMVGGVTP-----------KK--------------GGT--EHLG--LPVFN 89 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G---~~vv~~VnP-----------~~--------------~g~--~i~G--~p~y~ 89 (340)
.++|+|.|+ |++|+.+.+.+.+.. .+++ .||. ++ .|+ .+.| ++++.
T Consensus 60 ~~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 368889999 999999999988653 3555 4553 11 111 1234 33443
Q ss_pred --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+++++|= +.++|+++.|+......+.....++.|.+.|+ +|.
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~-iSa 182 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVL-ITA 182 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEE-eCC
Confidence 4777773 24799999999999999999999999999866 453
No 253
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.70 E-value=2.4 Score=38.30 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-----------CcccccCHHHhhccCCCcEEEEecChhh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-----------GLPVFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-----------G~p~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
.+|+|+|+ |..|..++++|...|..-+..+|+..-..+-. |.+--..+.+-..+.+||+-+-+.+...
T Consensus 22 s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 35677799 66999999999999998666888764211111 2111111112122235676665543322
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcc
Q 019500 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~ 163 (340)
. +..++.. .+...++ .+.. +.+....+.+.+ ++++++++-..+.|+.
T Consensus 101 ~-~~~~~~~-~~~dvVi-~~~~-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~ 147 (197)
T cd01492 101 S-EKPEEFF-SQFDVVV-ATEL-SRAELVKINELC-RKLGVKFYATGVHGLF 147 (197)
T ss_pred c-ccHHHHH-hCCCEEE-ECCC-CHHHHHHHHHHH-HHcCCCEEEEEecCCE
Confidence 2 2222222 3556543 4433 233444555665 7889998877777754
No 254
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=89.66 E-value=3.6 Score=40.45 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred chHHHHHHHHcCCeEEEeeCCCCC--Cc------eecCcccccCHHHhhccCCCcEEEEecChhhH-HHHHHHHHHcC-C
Q 019500 55 GTFHTEQAIEYGTKMVGGVTPKKG--GT------EHLGLPVFNTVAEAKAETKANASAIYVPPPFA-AAAILEAMEAE-L 124 (340)
Q Consensus 55 G~~v~~~l~~~G~~vv~~VnP~~~--g~------~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v-~~~v~ea~~~G-v 124 (340)
|+..+++|.+.||++. ..|++.. .+ .-.|.+..++..++.+ +.|++++++|.... .++++..++.- -
T Consensus 32 GspMArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa--~ADVVIL~LPd~aaV~eVl~GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK--HGEIHVLFTPFGKGTFSIARTIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh--CCCEEEEecCCHHHHHHHHHHHHhcCCC
Confidence 5678899999999954 4444321 01 1247888889999987 58999999998764 45655444432 2
Q ss_pred cEEEEecCCCChhhHH
Q 019500 125 DLVVCITEGIPQHDMV 140 (340)
Q Consensus 125 k~vvi~t~Gf~e~~~~ 140 (340)
..+||-++=.+.+...
T Consensus 109 GaIVID~STIsP~t~~ 124 (341)
T TIGR01724 109 NAVICNTCTVSPVVLY 124 (341)
T ss_pred CCEEEECCCCCHHHHH
Confidence 3345545545544433
No 255
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.62 E-value=2.6 Score=41.20 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=45.1
Q ss_pred eEEEEeCCCCCcchHHHHHHH-HcCCeEEEeeCCCCCCc--eecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT--EHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~VnP~~~g~--~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
-.|.|+|. |++|+.+++.+. .+|.+++ ..+|....+ .-.|.+ |.+++++.+ ..|++++.+|-
T Consensus 146 ktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~--~sDvv~lh~pl 210 (323)
T PRK15409 146 KTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQ--ESDFVCIILPL 210 (323)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHH--hCCEEEEeCCC
Confidence 34666799 999999999997 7888876 456543111 123443 669999987 58999999985
No 256
>PLN02235 ATP citrate (pro-S)-lyase
Probab=89.44 E-value=2.7 Score=42.69 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCC--CceEEeecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEccCCCcHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGL--GQSTCVGIGGDPFNGTNFVDCVTKFI----ADPQTEGIILIGEIGGTAEED 252 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~gi--G~S~~vs~Gn~a~~dv~~~d~l~~l~----~Dp~T~~I~ly~E~~g~~~~~ 252 (340)
..|+|+.+.--++++.+.+|.....|. -...|.-+|+.+ +.-.+.+.+.-+. .||+.++|++-+=++=..-.+
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 459999999999999999999988883 467888888876 3556667676666 799999997776432111111
Q ss_pred -H---HHHHHHhC--------CCCCEEEEEeCCCCC
Q 019500 253 -A---AALIKESG--------TEKPIVAFIAGLTAP 276 (340)
Q Consensus 253 -~---~~f~~a~r--------~~KPVvvlk~Grs~~ 276 (340)
+ +-.+++++ .++|||+=..|....
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~e 382 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHH
Confidence 2 23344443 368998866554443
No 257
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.41 E-value=1.3 Score=40.41 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.8
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.-+|+|+|. |+.|..-++.|++.|.++. .|+|+.
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL 42 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence 447888899 8888888899999998765 788875
No 258
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.39 E-value=2 Score=42.55 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=60.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC-CC----------CC---C---ce---------ecC--cccc--cCH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT-PK----------KG---G---TE---------HLG--LPVF--NTV 91 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn-P~----------~~---g---~~---------i~G--~p~y--~sl 91 (340)
++|.|.|. |++|+.+.|.+.+. .++++ .|| +. ++ | .+ +.| ++++ ++.
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vv-aINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIV-AINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDP 80 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCCh
Confidence 68889999 99999999987654 56777 344 21 10 0 00 233 3344 367
Q ss_pred HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500 92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
+++|= +.++|+++.|+......+.+...++.|++.++ +|
T Consensus 81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~-iS 120 (343)
T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI-LT 120 (343)
T ss_pred hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEE-eC
Confidence 78773 24799999999999999999999999998855 45
No 259
>PRK08618 ornithine cyclodeaminase; Validated
Probab=89.37 E-value=0.64 Score=45.30 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=60.7
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce-------ecCc--ccccCHHHhhccCCCcEEEEec
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE-------HLGL--PVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~-------i~G~--p~y~sl~dip~~~~vDlavi~v 107 (340)
.+...++.|+|+ |..++.++..+.. .+.+.+..+|+.... ++ -.++ ..|.+++++.. +.|+++.+|
T Consensus 124 ~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~aDiVi~aT 200 (325)
T PRK08618 124 REDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIE--EADIIVTVT 200 (325)
T ss_pred CCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHh--cCCEEEEcc
Confidence 444566788899 8899888877654 577777788876421 11 1243 35788888775 599999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEec
Q 019500 108 PPPFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
|.. .+-.- ++++.|.+..-|.+
T Consensus 201 ~s~-~p~i~-~~l~~G~hV~~iGs 222 (325)
T PRK08618 201 NAK-TPVFS-EKLKKGVHINAVGS 222 (325)
T ss_pred CCC-CcchH-HhcCCCcEEEecCC
Confidence 977 34444 88888988655443
No 260
>PRK09414 glutamate dehydrogenase; Provisional
Probab=89.29 E-value=2.4 Score=43.40 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=62.5
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-------CCCCCceec-----------Cccccc--------CHHH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-------PKKGGTEHL-----------GLPVFN--------TVAE 93 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-------P~~~g~~i~-----------G~p~y~--------sl~d 93 (340)
.+..+|+|+|. |+.|+..++.|.+.|.++++.-| |+. -.+. .+.-|+ +-++
T Consensus 230 l~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 230 FEGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45678999999 99999999999999999886523 332 1111 121221 1222
Q ss_pred hhccCCCcEEEEecChhh-HHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 94 AKAETKANASAIYVPPPF-AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 94 ip~~~~vDlavi~vp~~~-v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+.+ .++|+.+-|..... ..+.+....+.++|.|+=.+-|.-..+..++ + ++.|+.++ |.
T Consensus 307 i~~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~---L-~~rGI~~v-PD 366 (445)
T PRK09414 307 PWS-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEV---F-LEAGVLFA-PG 366 (445)
T ss_pred ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHH---H-HHCCcEEE-Cc
Confidence 222 35788887765433 3444445545578875533333322223322 2 46787776 64
No 261
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=89.20 E-value=2.8 Score=41.17 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=61.1
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC-CCCCCc--------------e--ecCcccccCHHHhhccCCCcEE
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT-PKKGGT--------------E--HLGLPVFNTVAEAKAETKANAS 103 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn-P~~~g~--------------~--i~G~p~y~sl~dip~~~~vDla 103 (340)
....|+|.||||-+|+.+++.|++.||++.+-|- |..... + ...+.-|.++++..+ ++|.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence 3567899999999999999999999999876664 332000 0 134555667777766 47766
Q ss_pred EEecCh-----------------hhHHHHHHHHHHcC-CcEEEEecCC
Q 019500 104 AIYVPP-----------------PFAAAAILEAMEAE-LDLVVCITEG 133 (340)
Q Consensus 104 vi~vp~-----------------~~v~~~v~ea~~~G-vk~vvi~t~G 133 (340)
+=+-.| ..+..+++.|.+.. ||.+| +|+.
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TSS 129 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTSS 129 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eecc
Confidence 532211 23456888888888 99965 6653
No 262
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.01 E-value=2.6 Score=40.81 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=28.8
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
|...+|+|.|++|-.|+.+++.|.+.|++++..
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~ 40 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHAT 40 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 566789999999999999999999999997743
No 263
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.99 E-value=1.7 Score=42.69 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=62.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec-------------CcccccCHHHhhccCCCcEEEEecCh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL-------------GLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~-------------G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
.+|+|+|+ |..|..++++|...|...+..||+..-..+-. |.|--..+.+-..+.++++-+...+.
T Consensus 25 ~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 45777899 88999999999999986555888865211111 11111111111111234555555554
Q ss_pred hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 110 PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
+...+.+++.++ +...+|..+..+. ....+.+++ +++|++++--.+.|
T Consensus 104 ~~~~~~~~~~~~-~~DlVid~~D~~~--~r~~in~~~-~~~~ip~i~~~~~g 151 (338)
T PRK12475 104 DVTVEELEELVK-EVDLIIDATDNFD--TRLLINDLS-QKYNIPWIYGGCVG 151 (338)
T ss_pred cCCHHHHHHHhc-CCCEEEEcCCCHH--HHHHHHHHH-HHcCCCEEEEEecc
Confidence 444455566543 5666555444331 122233444 67888876555555
No 264
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.94 E-value=0.42 Score=40.43 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce----ecCc----ccccCHHHhhccCCCcEEEEecChhh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE----HLGL----PVFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~----i~G~----p~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
+.-+|+|+|+ |.+++.++..|.+.|++-++.+|++... ++ ..+. --|.++.+... +.|++|-++|...
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTTS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCCC
Confidence 4556788899 9999999999999999867799987510 11 2111 12344554444 5899999998865
Q ss_pred HHHHHHHHHHcC
Q 019500 112 AAAAILEAMEAE 123 (340)
Q Consensus 112 v~~~v~ea~~~G 123 (340)
. .+-++.++..
T Consensus 88 ~-~i~~~~~~~~ 98 (135)
T PF01488_consen 88 P-IITEEMLKKA 98 (135)
T ss_dssp T-SSTHHHHTTT
T ss_pred c-ccCHHHHHHH
Confidence 5 3333444444
No 265
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=88.88 E-value=1.2 Score=40.60 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC---CCCCEEEEEeCCCCC
Q 019500 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG---TEKPIVAFIAGLTAP 276 (340)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r---~~KPVvvlk~Grs~~ 276 (340)
+.+.|+-+.+||+.++|++++.+.|.......++.++++ .+|||+++--|....
T Consensus 18 l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 18 FDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred HHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence 456677778899999999999987766777777777665 359999999887653
No 266
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.84 E-value=1.7 Score=39.03 Aligned_cols=88 Identities=23% Similarity=0.272 Sum_probs=47.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-------------------------cCcccccCHHHhhcc
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-------------------------LGLPVFNTVAEAKAE 97 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-------------------------~G~p~y~sl~dip~~ 97 (340)
++|.|+|. |..|-..+-.+.+.|++++ +++.+. +.+ ..+....+.++...
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~-g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~- 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVI-GVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK- 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEE-EE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH-
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEE-EEeCCh--HHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh-
Confidence 36778899 8899888888999999977 544432 111 12334456666444
Q ss_pred CCCcEEEEecChhh----------HHHHHHHHHHcCC-cEEEEecCCCCh
Q 019500 98 TKANASAIYVPPPF----------AAAAILEAMEAEL-DLVVCITEGIPQ 136 (340)
Q Consensus 98 ~~vDlavi~vp~~~----------v~~~v~ea~~~Gv-k~vvi~t~Gf~e 136 (340)
+.|+++||+|... +.+++++..+.-- ..++++-|=++.
T Consensus 76 -~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 76 -DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp -H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred -ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 4899999998432 4555555554322 345566665543
No 267
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.75 E-value=1.2 Score=42.54 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=44.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e--------e--------------cCcccccCHHHhhcc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E--------H--------------LGLPVFNTVAEAKAE 97 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~--------i--------------~G~p~y~sl~dip~~ 97 (340)
+|.|+|+ |.||.-++..+...|++++ +-++|..... . + .-+....+++++.
T Consensus 7 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~-- 83 (286)
T PRK07819 7 RVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA-- 83 (286)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC--
Confidence 6777799 9999999999999999844 4455543100 0 0 1122556776653
Q ss_pred CCCcEEEEecChhhHH
Q 019500 98 TKANASAIYVPPPFAA 113 (340)
Q Consensus 98 ~~vDlavi~vp~~~v~ 113 (340)
++|+++-++|.+.-.
T Consensus 84 -~~d~ViEav~E~~~~ 98 (286)
T PRK07819 84 -DRQLVIEAVVEDEAV 98 (286)
T ss_pred -CCCEEEEecccCHHH
Confidence 589999999886553
No 268
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.73 E-value=0.67 Score=37.34 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=47.2
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC--CCcee-cCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK--GGTEH-LGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~--~g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
+.-+..+|+|+|. |+.+..-++.|++.|.++. .+.|.. ..+.+ +--..|+ +++. +.|+++.+++...+-+
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~l~---~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--EDLD---GADLVFAATDDPELNE 75 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GGCT---TESEEEE-SS-HHHHH
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HHHh---hheEEEecCCCHHHHH
Confidence 3456678889998 8888888888888898755 677762 00111 1112232 3443 4799999996655544
Q ss_pred -HHHHHHHcCCcE
Q 019500 115 -AILEAMEAELDL 126 (340)
Q Consensus 115 -~v~ea~~~Gvk~ 126 (340)
+.++|-+.|+..
T Consensus 76 ~i~~~a~~~~i~v 88 (103)
T PF13241_consen 76 AIYADARARGILV 88 (103)
T ss_dssp HHHHHHHHTTSEE
T ss_pred HHHHHHhhCCEEE
Confidence 445555567654
No 269
>PLN02583 cinnamoyl-CoA reductase
Probab=88.55 E-value=3.9 Score=38.78 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
.|+|.|++|.+|+.+++.|.+.|++++..+
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~ 37 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRGYTVHAAV 37 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 578899999999999999999999977444
No 270
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.53 E-value=1 Score=45.49 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG 84 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G 84 (340)
+...|.|+|++|+.|+.+++.|++.||.+.+.|-....-..+.+
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~ 121 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG 121 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc
Confidence 45678888999999999999999999986655544332134444
No 271
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.41 E-value=1.6 Score=40.99 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=51.0
Q ss_pred HHHHHHcCCe-EEEeeCCCCCCce---ecCc--ccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH-cCCcEEEEec
Q 019500 59 TEQAIEYGTK-MVGGVTPKKGGTE---HLGL--PVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME-AELDLVVCIT 131 (340)
Q Consensus 59 ~~~l~~~G~~-vv~~VnP~~~g~~---i~G~--p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~-~Gvk~vvi~t 131 (340)
++.|++.|+. .|+++|++....+ -.|+ ..+.+.+.+. +.|++|+|+|.....+++++... ..-..+|.=.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~---~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVE---DADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGG---CCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE-
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhc---CCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEe
Confidence 4567777743 4558887651111 1343 2344444443 48999999999999999999988 3444555444
Q ss_pred CCCChhhHHHHHHHHhccCCcEEEc
Q 019500 132 EGIPQHDMVRVKAALNNQSKTRLVG 156 (340)
Q Consensus 132 ~Gf~e~~~~~l~~~aar~~girviG 156 (340)
++....-.+.+.+.. . .+.+++|
T Consensus 79 ~SvK~~~~~~~~~~~-~-~~~~~v~ 101 (258)
T PF02153_consen 79 GSVKAPIVEAMERLL-P-EGVRFVG 101 (258)
T ss_dssp -S-CHHHHHHHHHHH-T-SSGEEEE
T ss_pred CCCCHHHHHHHHHhc-C-cccceee
Confidence 555444344444443 2 4566554
No 272
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=88.38 E-value=3.5 Score=39.92 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=25.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~ 71 (340)
.+|+|.|++|-+|+.+++.|.+.|++++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~ 33 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYG 33 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence 46888999999999999999999999763
No 273
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.35 E-value=2.2 Score=41.74 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=43.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCc---e------------------ecCcccccCHHHhhccCCCc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGT---E------------------HLGLPVFNTVAEAKAETKAN 101 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~---~------------------i~G~p~y~sl~dip~~~~vD 101 (340)
+|.|+|+ |.||..++..+...|+++. +-++|..... . ..-+....++++... +.|
T Consensus 9 ~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~--~aD 85 (321)
T PRK07066 9 TFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA--DAD 85 (321)
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc--CCC
Confidence 4667799 9999999999999999954 3344332000 0 011234457777665 589
Q ss_pred EEEEecChhh
Q 019500 102 ASAIYVPPPF 111 (340)
Q Consensus 102 lavi~vp~~~ 111 (340)
+++-++|.+.
T Consensus 86 lViEavpE~l 95 (321)
T PRK07066 86 FIQESAPERE 95 (321)
T ss_pred EEEECCcCCH
Confidence 9999998655
No 274
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=88.29 E-value=1.7 Score=36.98 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=21.8
Q ss_pred EEEeCCCCCcchHHHHHHHHcC--CeEEEe
Q 019500 45 VICQGITGKNGTFHTEQAIEYG--TKMVGG 72 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G--~~vv~~ 72 (340)
|+|.|+||..|+...+.+.++. |++++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L 30 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL 30 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence 4566999999999999888874 776643
No 275
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=88.24 E-value=1.3 Score=44.81 Aligned_cols=89 Identities=16% Similarity=0.051 Sum_probs=61.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCCc---------ee------------------cC--cccc--cC
Q 019500 43 TRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT---------EH------------------LG--LPVF--NT 90 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g~---------~i------------------~G--~p~y--~s 90 (340)
++|.|.|. |++|+.+.+.+.+ .++++++.-||....+ .+ .| ++++ ++
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 68999999 9999999998875 5788885333532101 11 12 2223 14
Q ss_pred HHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 91 VAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 91 l~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+++++-. .++|+++.++......+.....++.|.|.+||=.+
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 5555522 36999999999988888888899999988665433
No 276
>PRK08328 hypothetical protein; Provisional
Probab=88.14 E-value=3.2 Score=38.43 Aligned_cols=115 Identities=11% Similarity=0.092 Sum_probs=63.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHh------------hccCCCcEEEEecChh
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA------------KAETKANASAIYVPPP 110 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~di------------p~~~~vDlavi~vp~~ 110 (340)
.+|+|+|+ |..|..++++|...|..-+..||+..-..+-.+...+-+-+|+ ..+.++|+-|...+..
T Consensus 28 ~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR 106 (231)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 35777799 8899999999999998756678876521111111121111111 1112466666654443
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
...+.+++.. .+...++..+..+ +....+.+.+ ++++++++--.+.|+
T Consensus 107 ~~~~~~~~~l-~~~D~Vid~~d~~--~~r~~l~~~~-~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 107 LSEENIDEVL-KGVDVIVDCLDNF--ETRYLLDDYA-HKKGIPLVHGAVEGT 154 (231)
T ss_pred CCHHHHHHHH-hcCCEEEECCCCH--HHHHHHHHHH-HHcCCCEEEEeeccC
Confidence 3334444444 3566655333333 2222333444 788899887666664
No 277
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.11 E-value=1.2 Score=45.15 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHHH-HHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAA-ILEA 119 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~-v~ea 119 (340)
-+|+|+|+ |.+|..+++.++..|.+++ .-++|.+.. ..-.|..+. ++++... ..|+++.++....+.+. .-++
T Consensus 203 ktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~--~aDVVI~atG~~~~i~~~~l~~ 278 (413)
T cd00401 203 KVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVK--EGDIFVTTTGNKDIITGEHFEQ 278 (413)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHc--CCCEEEECCCCHHHHHHHHHhc
Confidence 35778899 9999999999999999844 234554410 012455433 3455554 58999999876554332 2444
Q ss_pred HHcCC
Q 019500 120 MEAEL 124 (340)
Q Consensus 120 ~~~Gv 124 (340)
.+.|.
T Consensus 279 mk~Gg 283 (413)
T cd00401 279 MKDGA 283 (413)
T ss_pred CCCCc
Confidence 45444
No 278
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=88.05 E-value=2.6 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
+..+|+|+|. |+.|+..++.|.+.|.++++.-
T Consensus 37 ~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVs 68 (254)
T cd05313 37 KGKRVAISGS-GNVAQYAAEKLLELGAKVVTLS 68 (254)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence 4568899999 9999999999999999988653
No 279
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=88.00 E-value=1.5 Score=36.15 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=52.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh------hhHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAIL 117 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~------~~v~~~v~ 117 (340)
+|+|+|- |-....+++.+++.|++.+ .||.+. +.+. . +... .|-++.--|. -....+++
T Consensus 4 kvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~s-----~---~~~~---ad~~~~~~~~~~~~~yl~~e~I~~ 68 (110)
T PF00289_consen 4 KVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTVS-----T---HVDM---ADEAYFEPPGPSPESYLNIEAIID 68 (110)
T ss_dssp EEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTTG-----H---HHHH---SSEEEEEESSSGGGTTTSHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hccc-----c---cccc---cccceecCcchhhhhhccHHHHhh
Confidence 5666675 6566777888999999977 455443 1111 1 1111 3444322111 33455666
Q ss_pred HHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 118 EAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 118 ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
-+.+.|+..++ ---||-. +..++.+.+ +++|+.++||+
T Consensus 69 ia~~~g~~~i~-pGyg~ls-e~~~fa~~~-~~~gi~fiGp~ 106 (110)
T PF00289_consen 69 IARKEGADAIH-PGYGFLS-ENAEFAEAC-EDAGIIFIGPS 106 (110)
T ss_dssp HHHHTTESEEE-STSSTTT-THHHHHHHH-HHTT-EESSS-
T ss_pred HhhhhcCcccc-cccchhH-HHHHHHHHH-HHCCCEEECcC
Confidence 66666877744 2223422 234455555 58999999997
No 280
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=2 Score=42.05 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=61.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----------cCcc-----------------------c
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----------LGLP-----------------------V 87 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----------~G~p-----------------------~ 87 (340)
..-|+|+|+ |..|+.++..|.+.|.+.+..|++..-. ... -|.| .
T Consensus 74 ~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 74 NSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred CcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 445888999 8899999999999999866677775310 000 1222 1
Q ss_pred cc--CHHHhhccCCCcEEEEecCh-hhHHHHHHHHHHcCCcEEEEecCCC
Q 019500 88 FN--TVAEAKAETKANASAIYVPP-PFAAAAILEAMEAELDLVVCITEGI 134 (340)
Q Consensus 88 y~--sl~dip~~~~vDlavi~vp~-~~v~~~v~ea~~~Gvk~vvi~t~Gf 134 (340)
|. |=+|+.- .+||.+++|.-. +.-.+.++.|..+|++. |-+.|.
T Consensus 153 ~~~~s~edll~-gnPdFvvDciDNidtKVdLL~y~~~~~l~V--iss~Ga 199 (430)
T KOG2018|consen 153 WTSSSEEDLLS-GNPDFVVDCIDNIDTKVDLLEYCYNHGLKV--ISSTGA 199 (430)
T ss_pred cCCCchhhhhc-CCCCeEeEhhhhhhhhhHHHHHHHHcCCce--EeccCc
Confidence 21 2334433 369999999965 66779999999999997 346664
No 281
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.91 E-value=1.3 Score=43.03 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=45.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~ 109 (340)
.-.|.|+|. |++|+.+++.+..+|.+++ .++|.. .. ... -+.+++++.. ..|++++.+|-
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~--~sDiv~l~lPl 207 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLP--QVDALTLHCPL 207 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHH--hCCEEEECCCC
Confidence 335667799 9999999999999999877 567653 11 111 2458999987 48999999995
No 282
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.89 E-value=1.9 Score=43.93 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=65.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhhHHH-HHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA-AILE 118 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~-~v~e 118 (340)
.-+|+|+|+ |++|+.+++.++..|.+++ +-++|...- ....|..+. +++++.+ ..|+++.++....+.+ ...+
T Consensus 212 Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~--~aDVVI~aTG~~~vI~~~~~~ 287 (425)
T PRK05476 212 GKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAE--LGDIFVTATGNKDVITAEHME 287 (425)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHh--CCCEEEECCCCHHHHHHHHHh
Confidence 335778899 9999999999999999844 335664410 112465543 5777765 5899999986544333 2223
Q ss_pred HHHcCCcEEEEecCCCC-hhhHHHHHHHHhccCCcEEEccCCCCcccC
Q 019500 119 AMEAELDLVVCITEGIP-QHDMVRVKAALNNQSKTRLVGPNCPGVIKP 165 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~-e~~~~~l~~~aar~~girviGPNc~Gi~~p 165 (340)
..+.| .+++....|. |-+...|.+.+ ...+-++||.-.+.-|
T Consensus 288 ~mK~G--ailiNvG~~d~Eid~~~L~~~~---~~~~~v~~~v~~y~~~ 330 (425)
T PRK05476 288 AMKDG--AILANIGHFDNEIDVAALEELA---VKWREIKPQVDEYTLP 330 (425)
T ss_pred cCCCC--CEEEEcCCCCCccChHHHhhcC---cceeecCCCceEEEeC
Confidence 33333 2333333343 33455554432 1233457775554444
No 283
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.80 E-value=3.1 Score=40.36 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=58.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC------CCcee---cCccccc----CHHHhhccCCCcEEEEecChh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK------GGTEH---LGLPVFN----TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~------~g~~i---~G~p~y~----sl~dip~~~~vDlavi~vp~~ 110 (340)
+|.|+|+ |-+|....-.|.+.|..+...+.+++ .|-.+ .+.+.++ .-.+.. .+.|++++++.+-
T Consensus 2 kI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~--~~~Dlviv~vKa~ 78 (307)
T COG1893 2 KILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEAL--GPADLVIVTVKAY 78 (307)
T ss_pred eEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhc--CCCCEEEEEeccc
Confidence 5778899 99999999999998844443444442 11111 2211111 111111 2589999999999
Q ss_pred hHHHHHHHHHHcCC--cEEEEecCCCChhh
Q 019500 111 FAAAAILEAMEAEL--DLVVCITEGIPQHD 138 (340)
Q Consensus 111 ~v~~~v~ea~~~Gv--k~vvi~t~Gf~e~~ 138 (340)
...++++.....-- ..++.++-|....+
T Consensus 79 q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 79 QLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 99999888877632 23677788986554
No 284
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=87.73 E-value=2.2 Score=43.28 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.8
Q ss_pred cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
+.-=+.++..+|+|.|++|-.|+.+++.|.+.|++++...+
T Consensus 112 ~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 112 VPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 44446778889999999999999999999999999774433
No 285
>PLN02494 adenosylhomocysteinase
Probab=87.70 E-value=1.3 Score=45.55 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=58.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEE-eeCCCCC-CceecCcccccCHHHhhccCCCcEEEEecChhhHH-HHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVG-GVTPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAA-AAILEA 119 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~-~VnP~~~-g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~-~~v~ea 119 (340)
-.|+|+|. |++|+.+++.++.+|.+++. -++|... ...-.|..+. +++++.. ..|+++.++....+. ...-++
T Consensus 255 KtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~--~ADVVI~tTGt~~vI~~e~L~~ 330 (477)
T PLN02494 255 KVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVS--EADIFVTTTGNKDIIMVDHMRK 330 (477)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHh--hCCEEEECCCCccchHHHHHhc
Confidence 45778899 99999999999999998552 2455421 0123455544 5777665 489999887765542 222223
Q ss_pred HHcCCcEEEEecCCC-ChhhHHHHHHH
Q 019500 120 MEAELDLVVCITEGI-PQHDMVRVKAA 145 (340)
Q Consensus 120 ~~~Gvk~vvi~t~Gf-~e~~~~~l~~~ 145 (340)
.+.| ++++....| .+-+...|.+.
T Consensus 331 MK~G--AiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 331 MKNN--AIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCCC--CEEEEcCCCCCccCHHHHhhc
Confidence 3333 333334444 35566666554
No 286
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.60 E-value=11 Score=29.78 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=46.7
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccc-cCHHHhhccCCCcEEEEecC---hhhHHHHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVF-NTVAEAKAETKANASAIYVP---PPFAAAAILEAM 120 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y-~sl~dip~~~~vDlavi~vp---~~~v~~~v~ea~ 120 (340)
|+|+|.-.+.-...-+.+.++|++.+.- .++. |..-. ..+.+... .+|++|+++. -.....+-+.|-
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~------~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH-GRDG------GDEKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC------CCccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHH
Confidence 5677964455555666777889985533 2222 11111 12444333 4799999774 455666777777
Q ss_pred HcCCcEEEEecCCCC
Q 019500 121 EAELDLVVCITEGIP 135 (340)
Q Consensus 121 ~~Gvk~vvi~t~Gf~ 135 (340)
+.+++.+ ++.+.+
T Consensus 73 k~~ip~~--~~~~~~ 85 (97)
T PF10087_consen 73 KYGIPII--YSRSRG 85 (97)
T ss_pred HcCCcEE--EECCCC
Confidence 7788864 444443
No 287
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.55 E-value=4.1 Score=39.92 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=44.7
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-CceecCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
...+.|+|. |++|+.+++.+..+|.+++ .-||+.. ..+..+--.|-+++++.+ +.|++++..|..
T Consensus 146 gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~~~y~~l~ell~--~sDii~l~~Plt 211 (324)
T COG1052 146 GKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELGARYVDLDELLA--ESDIISLHCPLT 211 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcCceeccHHHHHH--hCCEEEEeCCCC
Confidence 334556699 9999999999998888866 3444321 112222234555999998 599999999863
No 288
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=87.45 E-value=2.1 Score=40.49 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=25.6
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
|+|.|++|-+|+.+++.|.+.|++++..++.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence 5678999999999999999999975655543
No 289
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=87.43 E-value=2.4 Score=37.86 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.2
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
|+|.|++|-.|+.+++.|++.|++++....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~ 30 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSR 30 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEES
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccc
Confidence 568899999999999999999999663443
No 290
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=87.41 E-value=9.7 Score=37.97 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=77.3
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC----------cee----------------cC-cccccCH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG----------TEH----------------LG-LPVFNTV 91 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g----------~~i----------------~G-~p~y~sl 91 (340)
.+.++|-++|+ |.||+-++.+.... |+++++.-|.+-.+ +++ .| +-+-.+.
T Consensus 15 G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~ 93 (438)
T COG4091 15 GKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDA 93 (438)
T ss_pred CCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecch
Confidence 46899999999 99999988877764 88877653322210 010 11 1122345
Q ss_pred HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEec----------------------CCCChh--hHHHHHHHH
Q 019500 92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCIT----------------------EGIPQH--DMVRVKAAL 146 (340)
Q Consensus 92 ~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t----------------------~Gf~e~--~~~~l~~~a 146 (340)
+.+.....+|++|.+| -|+.-.++.-+++++|-+.+.+-- .+..++ -..+|.+++
T Consensus 94 ~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa 173 (438)
T COG4091 94 ELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFA 173 (438)
T ss_pred hhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHH
Confidence 5555434589999988 456677888999999977654321 111122 245777876
Q ss_pred hccCCcEEEccCCCCcccCC
Q 019500 147 NNQSKTRLVGPNCPGVIKPG 166 (340)
Q Consensus 147 ar~~girviGPNc~Gi~~p~ 166 (340)
+..|+.++--. =|..||-
T Consensus 174 -~a~G~evv~aG-KGkNnpl 191 (438)
T COG4091 174 -SALGFEVVSAG-KGKNNPL 191 (438)
T ss_pred -HhcCCeEEecc-CCcCCCC
Confidence 77888877433 4555653
No 291
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=87.35 E-value=1.2 Score=41.96 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=66.1
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCCcee----------cC-ccccc-----CH-----
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGGTEH----------LG-LPVFN-----TV----- 91 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g~~i----------~G-~p~y~-----sl----- 91 (340)
.+..+|+|+|. |++|...++.|.+.|.++++. .||+. -.+ .. +.-|+ ..
T Consensus 30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G--ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 106 (244)
T PF00208_consen 30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG--LDVEELLRIKEERGSRVDDYPLESPDGAEYIPN 106 (244)
T ss_dssp STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE--EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECH
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC--chHHHHHHHHHHhCCcccccccccccceeEecc
Confidence 45678899999 999999999999999987743 36653 211 12 23333 11
Q ss_pred -HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 92 -AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 92 -~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+++.+ .++|+.+-|- +.....+.+...++.|+|.++=.+-+.-..+..++ + ++.|+.++ |.
T Consensus 107 ~~~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~---L-~~rGI~vi-PD 169 (244)
T PF00208_consen 107 DDEILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEI---L-RERGILVI-PD 169 (244)
T ss_dssp HCHGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHH---H-HHTT-EEE--H
T ss_pred cccccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHH---H-HHCCCEEE-cc
Confidence 13443 3699999886 44555666666778889986644434322222222 2 57787776 54
No 292
>PRK06046 alanine dehydrogenase; Validated
Probab=87.22 E-value=0.76 Score=44.80 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=58.3
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-c----ee---cC--cccccCHHHhhccCCCcEEEEec
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-T----EH---LG--LPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~----~i---~G--~p~y~sl~dip~~~~vDlavi~v 107 (340)
.+....|.|+|+ |.+++.+++.+.. .+.+.++.+|++... + ++ .| +.+|++++++.+ .|+++.+|
T Consensus 126 ~~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aT 201 (326)
T PRK06046 126 RKDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTT 201 (326)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEec
Confidence 345667788899 9999999988875 477878788886421 1 11 24 346888998874 89999999
Q ss_pred ChhhHHHHHHHHHHcCCcEEEE
Q 019500 108 PPPFAAAAILEAMEAELDLVVC 129 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~vvi 129 (340)
|... +=.-.+.++.|.+..-|
T Consensus 202 ps~~-P~~~~~~l~~g~hV~~i 222 (326)
T PRK06046 202 PSRK-PVVKAEWIKEGTHINAI 222 (326)
T ss_pred CCCC-cEecHHHcCCCCEEEec
Confidence 9754 22224445677765433
No 293
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=87.19 E-value=4.1 Score=39.38 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=65.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCC--CCCce---e-----cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPK--KGGTE---H-----LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~--~~g~~---i-----~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
++.|++.|. |..|....+.+.+. +++++..+|.. +.|++ + .|+..-.++++.... .+|.++...-.+
T Consensus 2 ~~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~ 79 (350)
T COG3804 2 SLRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLP 79 (350)
T ss_pred CceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccc
Confidence 467888898 89998888877776 99988776533 23333 2 344455556555432 334444333223
Q ss_pred hHHHHHHHHHHcCCcEEEEecCC-------C-ChhhHHHHHHHHhccCCcEEEcc
Q 019500 111 FAAAAILEAMEAELDLVVCITEG-------I-PQHDMVRVKAALNNQSKTRLVGP 157 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~G-------f-~e~~~~~l~~~aar~~girviGP 157 (340)
. .+..++|+++|++.+ ++| | ..+..++..+.++|..+-.+.|-
T Consensus 80 ~-~~~y~rlL~aGiNVv---~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt 130 (350)
T COG3804 80 S-VDEYARLLRAGINVV---TPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT 130 (350)
T ss_pred h-HHHHHHHHHcCCcee---ccCccccCCCcCChHHhhchHHHHHhcCCceEEec
Confidence 3 678899999999862 443 2 23334455555534443366553
No 294
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.07 E-value=2.6 Score=41.28 Aligned_cols=90 Identities=10% Similarity=-0.128 Sum_probs=59.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCe--EEEeeC-C-CCCCcee--cCcccc-cCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTK--MVGGVT-P-KKGGTEH--LGLPVF-NTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~--vv~~Vn-P-~~~g~~i--~G~p~y-~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
..+|+| ||+|..|+.+.+.|.+.+|. -+++++ + ...|+++ .|.... ..+++-.- .++|+++. .+.+...+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~~ 79 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQAE 79 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHHH
Confidence 346888 99999999999999987763 233444 2 3334433 343221 13333211 26999999 99999999
Q ss_pred HHHHHHHcCCcEEEEecCCCC
Q 019500 115 AILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 115 ~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
....+.++|... |--|+-|.
T Consensus 80 ~ap~a~~aG~~V-IDnSsa~R 99 (322)
T PRK06901 80 HLAQAAEAGCIV-IDLYGICA 99 (322)
T ss_pred HHHHHHHCCCEE-EECChHhh
Confidence 999999999865 44565553
No 295
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=87.02 E-value=2.4 Score=39.34 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=28.4
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
.+..+|+|+|. |+.|+..++.|.+.|.++++..+
T Consensus 29 l~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D 62 (227)
T cd01076 29 LAGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSD 62 (227)
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 35678889998 99999999999999999885533
No 296
>PRK14031 glutamate dehydrogenase; Provisional
Probab=86.86 E-value=5.8 Score=40.61 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=28.5
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
.+..+|+|+|. |+.|+..++.|.+.|.+++ .|.+
T Consensus 226 l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVV-aVSD 259 (444)
T PRK14031 226 LKGKVCLVSGS-GNVAQYTAEKVLELGGKVV-TMSD 259 (444)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEEC
Confidence 45678999999 9999999999999999987 4443
No 297
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.86 E-value=4.7 Score=44.40 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=69.7
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH--------cCCe--EEEeeCCCCCCceecCcc------------cccCHHHhh-
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE--------YGTK--MVGGVTPKKGGTEHLGLP------------VFNTVAEAK- 95 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~--------~G~~--vv~~VnP~~~g~~i~G~p------------~y~sl~dip- 95 (340)
..+.++|+++|. |+.|+.+++.|.+ +|.+ +++..|.+..--.-.|+. ...+++.+.
T Consensus 455 ~~~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e 533 (810)
T PRK09466 455 AEKRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL 533 (810)
T ss_pred cCceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence 446899999999 9999988876543 3544 555554332100111111 111222221
Q ss_pred --cc--CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCC-----ChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 96 --AE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI-----PQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 96 --~~--~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf-----~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
.. .+.+++|.+++.+.......+++++|++.+ |+.= +-+...+|.+.+ +++|.++.=--+.|
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV---taNK~~~a~~~~~~~~l~~~a-~~~~~~~~yEasV~ 604 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVI---SANKLAGSSPSNFYRQIKDAF-AKTGRHWLYNATVG 604 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE---cCCcccccccHHHHHHHHHHH-HHcCCeEEEeceee
Confidence 11 123699999999988888889999999862 4321 123455676665 78888776434444
No 298
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.70 E-value=4.2 Score=39.17 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC---------CCcee--cCc-cccc---CHHHhhccCCCcEEEEe
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK---------GGTEH--LGL-PVFN---TVAEAKAETKANASAIY 106 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~---------~g~~i--~G~-p~y~---sl~dip~~~~vDlavi~ 106 (340)
+++|+|+|+ |-+|....-.|.+.|.++. .|.+.. .|-.+ .|- ..|+ +..+.. .++|+++++
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~--~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAA--EPIHRLLLA 77 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccc--cccCEEEEE
Confidence 346788899 9999999999988888754 444321 11111 111 1111 111111 258999999
Q ss_pred cChhhHHHHHHHHHHc-CC-cEEEEecCCCChhh
Q 019500 107 VPPPFAAAAILEAMEA-EL-DLVVCITEGIPQHD 138 (340)
Q Consensus 107 vp~~~v~~~v~ea~~~-Gv-k~vvi~t~Gf~e~~ 138 (340)
+......++++..... +- ..++.++-|+..++
T Consensus 78 vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e 111 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD 111 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence 9998888888776543 22 23567888996543
No 299
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=86.67 E-value=5.8 Score=38.57 Aligned_cols=176 Identities=21% Similarity=0.235 Sum_probs=83.5
Q ss_pred cCcccccCHHHhhccCCCcEEEEecCh------hhHHHHHHHHHHcCCcEEEEecCCCC--hhhHHHHHHHHhccCCcEE
Q 019500 83 LGLPVFNTVAEAKAETKANASAIYVPP------PFAAAAILEAMEAELDLVVCITEGIP--QHDMVRVKAALNNQSKTRL 154 (340)
Q Consensus 83 ~G~p~y~sl~dip~~~~vDlavi~vp~------~~v~~~v~ea~~~Gvk~vvi~t~Gf~--e~~~~~l~~~aar~~girv 154 (340)
.|+|+|.++++... .+|..|+-+-+ +...+.+.+|+++|... + +|+- -.+..++.+++ +++|.++
T Consensus 18 ~~iPi~~~~~~a~~--~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~I-v---sGLH~~L~ddpel~~~A-~~~g~~i 90 (301)
T PF07755_consen 18 RGIPIVASLEEAAA--GADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDI-V---SGLHDFLSDDPELAAAA-KKNGVRI 90 (301)
T ss_dssp S--BEESSHHHHHC--T-SEEEE---STTHCCHCCHHHHHHHHHHTT-EE-E---E-SSS-HCCHHHHHCCH-HCCT--E
T ss_pred CCCCccCCHHHHhc--CCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCE-E---ecChhhhccCHHHHHHH-HHcCCeE
Confidence 78999999999943 69999997632 45568999999999875 2 3432 23445565554 7889888
Q ss_pred EccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChH---H--HHHHHHHHHhCCCCceEEeecCCCC--------CCC
Q 019500 155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGT---L--TYEAVFQTTAVGLGQSTCVGIGGDP--------FNG 220 (340)
Q Consensus 155 iGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~---l--~~~~~~~~~~~giG~S~~vs~Gn~a--------~~d 220 (340)
+=-.- |. ...+..-.....+.=.|..+..+-+ + +.++.+.++++|+- +.|+.||-.. ..|
T Consensus 91 ~DvR~-----p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia~~Gv~iD 164 (301)
T PF07755_consen 91 IDVRK-----PPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGIN-AGFVATGQTGIMIAGYGVPID 164 (301)
T ss_dssp EETTS-------SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCHSEC--GG
T ss_pred eeccC-----CCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEecCCeecc
Confidence 76552 21 1111110001122334677765543 3 34456677777775 4577777421 011
Q ss_pred CCH--------HHHHHHhhcCCCccEEEEEEccCCCcHHHH------HHHHHHhCCCCCEEEEEeCCCCC
Q 019500 221 TNF--------VDCVTKFIADPQTEGIILIGEIGGTAEEDA------AALIKESGTEKPIVAFIAGLTAP 276 (340)
Q Consensus 221 v~~--------~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~------~~f~~a~r~~KPVvvlk~Grs~~ 276 (340)
--. ..++-...+ ++ ..|++-.++ . +..+ -.++.-.+-..=|+...+||..-
T Consensus 165 av~~DFvaGavE~~v~~~~~-~~-d~ivVEGQg--s-L~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~ 229 (301)
T PF07755_consen 165 AVPSDFVAGAVEALVPEAAE-EH-DWIVVEGQG--S-LSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHR 229 (301)
T ss_dssp GSBGGGHHHHHHHHHHHHCC-C--SEEEEE--S----TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-
T ss_pred chhhhhHHHHHHHHHHhhCc-CC-CEEEEeccc--c-ccCccccccchhhhccCCCCeEEEEecCCcccc
Confidence 111 222233333 44 776665553 1 2221 23444444555577777887664
No 300
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=86.65 E-value=2.3 Score=40.87 Aligned_cols=81 Identities=20% Similarity=0.159 Sum_probs=55.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEe-----------------
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIY----------------- 106 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~----------------- 106 (340)
+|+|.|++|.+|+.+.+.+. .+++++ +.+.+. ..+.-..++.++..+.+||++|=+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~ 74 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF 74 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence 47788999999998888887 567776 454332 233445567777665568888764
Q ss_pred -cChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 107 -VPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 107 -vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+++..+..+++.|.+.|.+.|- +|+
T Consensus 75 ~vNa~~~~~lA~aa~~~ga~lVh-iST 100 (281)
T COG1091 75 AVNATGAENLARAAAEVGARLVH-IST 100 (281)
T ss_pred HhHHHHHHHHHHHHHHhCCeEEE-eec
Confidence 3344556677888888988866 454
No 301
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=86.63 E-value=1.6 Score=46.06 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=34.5
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccC-CCcHHH---HHHHHHHhC-CCCCEEEEEeCC
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIG-GTAEED---AAALIKESG-TEKPIVAFIAGL 273 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~-g~~~~~---~~~f~~a~r-~~KPVvvlk~Gr 273 (340)
++.+.|+...+||++++|+|.+.+. |..... -++-++..| .+|||+++--.-
T Consensus 80 ~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 80 DIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4566677888999999999999853 322222 333333334 689999985443
No 302
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.58 E-value=5.8 Score=37.46 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
.+|+|.|++|-+|+.+++.|.+.|++++..+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 3578899999999999999999999866443
No 303
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=86.56 E-value=36 Score=33.80 Aligned_cols=210 Identities=18% Similarity=0.191 Sum_probs=121.4
Q ss_pred cccCHHHhhcc-CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC--cEEEccCCCCcc
Q 019500 87 VFNTVAEAKAE-TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVI 163 (340)
Q Consensus 87 ~y~sl~dip~~-~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g--irviGPNc~Gi~ 163 (340)
.|..+..+.++ ....-+|-++...+.+.+.-.|-..|+|+.|++..+-+..-...+ |.+| +.+.|.|.-=-.
T Consensus 60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~-----r~~GaeVil~g~~~dda~ 134 (347)
T COG1171 60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDAT-----RGYGAEVILHGDNFDDAY 134 (347)
T ss_pred HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHH-----HhcCCEEEEECCCHHHHH
Confidence 56666776532 245556666667888888888888899999888877664322222 3444 555666531000
Q ss_pred cCC-----CcccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhc-CCCcc
Q 019500 164 KPG-----ECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA-DPQTE 237 (340)
Q Consensus 164 ~p~-----~~~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~ 237 (340)
.-. .-...|.|++. +--+|.--|+++.++++...+. -=--+|++|+-- + .+-+..|+.. .|+||
T Consensus 135 ~~a~~~a~~~G~~~i~pfD----~p~viAGQGTi~lEileq~~~~--~d~v~vpvGGGG---L-isGia~~~k~~~p~~~ 204 (347)
T COG1171 135 AAAEELAEEEGLTFVPPFD----DPDVIAGQGTIALEILEQLPDL--PDAVFVPVGGGG---L-ISGIATALKALSPEIK 204 (347)
T ss_pred HHHHHHHHHcCCEEeCCCC----CcceeecccHHHHHHHHhcccc--CCEEEEecCccH---H-HHHHHHHHHHhCCCCe
Confidence 000 00122333321 3346777899999999876543 123478888762 1 2333444443 68899
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEE-eCCCCCCCCcccccCcccccccccceecCCCCcHHHHHHHHHHcCC
Q 019500 238 GIILIGEIGGTAEEDAAALIKESGTEKPIVAFI-AGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGV 316 (340)
Q Consensus 238 ~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk-~Grs~~~g~~~sHtg~~~~~~~~~ala~~~~g~~~~~~a~~~qaGv 316 (340)
+|.+--|. +..+.++++.+++++.+. .+.-.. |....+-| . ..|+-+-+-..=
T Consensus 205 vIGVEp~~-------a~~~~~Sl~~G~~~~~~~~~~tiaD-G~av~~~g---------~---------~tf~i~~~~vd~ 258 (347)
T COG1171 205 VIGVEPEG-------APSMYASLKAGKIVVVLPDVGTIAD-GLAVKRPG---------D---------LTFEILRELVDD 258 (347)
T ss_pred EEEEeeCC-------ChHHHHHHHcCCceeecCCCCcccc-ccccCCCC---------H---------HHHHHHHHcCCc
Confidence 99887664 345666777787777777 665555 55433444 2 233333222232
Q ss_pred eecCCHHHHHHHHHHHHHhcC
Q 019500 317 TVVESPAKIGAAMLEVFKQRG 337 (340)
Q Consensus 317 v~v~~~~el~~~~~~~~~~~~ 337 (340)
++.=+-+|+.++++.++++.+
T Consensus 259 ~v~V~e~ei~~am~~l~~~~~ 279 (347)
T COG1171 259 IVLVDEDEICAAMRDLFERTK 279 (347)
T ss_pred EEEECHHHHHHHHHHHHhcCC
Confidence 444455778888877776543
No 304
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.48 E-value=7.7 Score=37.74 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=51.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC-CeEEEeeCCCCC---Ccee--------cC----cccccCHHHhhccCCCcEEEE
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKG---GTEH--------LG----LPVFNTVAEAKAETKANASAI 105 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~VnP~~~---g~~i--------~G----~p~y~sl~dip~~~~vDlavi 105 (340)
..+|.|+|+ |.+|+.+...+...| .+ +..+|.+.. |... .+ +..+.+.+++. +.|++|+
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~---~ADiVVi 79 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIK---DSDVVVI 79 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhC---CCCEEEE
Confidence 447788899 999999888777777 45 335554331 1111 11 22334666654 4799999
Q ss_pred ec--Ch--------------hhHHHHHHHHHHcCCcEEEEec
Q 019500 106 YV--PP--------------PFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 106 ~v--p~--------------~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
+. |. ....+++++..+.+-+.++++.
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv 121 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICV 121 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88 22 3355677777777767644443
No 305
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=86.42 E-value=4.1 Score=40.19 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=55.2
Q ss_pred chHHHHHHHHcCCeEEEeeCCCCCC--------ceecCcccccCHHHhhccCCCcEEEEecChhh-HHHHHHHHHHcC-C
Q 019500 55 GTFHTEQAIEYGTKMVGGVTPKKGG--------TEHLGLPVFNTVAEAKAETKANASAIYVPPPF-AAAAILEAMEAE-L 124 (340)
Q Consensus 55 G~~v~~~l~~~G~~vv~~VnP~~~g--------~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~-v~~~v~ea~~~G-v 124 (340)
|...+.+|.+.|++++ ..|++... -.-.|+.+..+..+... +.|++++++|... +.++++.....- -
T Consensus 32 G~~MA~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~--~ADvVIlaVP~~~~v~~Vl~~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK--HGEIHILFTPFGKKTVEIAKNILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh--CCCEEEEECCCcHHHHHHHHHHHhhCCC
Confidence 4667788888899854 66665410 01246777778877765 5899999999988 777777665442 2
Q ss_pred cEEEEecCCCChhhH-HHHHHH
Q 019500 125 DLVVCITEGIPQHDM-VRVKAA 145 (340)
Q Consensus 125 k~vvi~t~Gf~e~~~-~~l~~~ 145 (340)
+.+|+-++..+.... +.+.+.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHH
Confidence 234444444444433 344443
No 306
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=86.42 E-value=4.7 Score=34.23 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=53.0
Q ss_pred CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHHHHcCCcE
Q 019500 53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDL 126 (340)
Q Consensus 53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea~~~Gvk~ 126 (340)
..|..++. .|...||++++. ++-. .=.-++.+.+ +++|++.++.-. +.++++++++.+.|.+.
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s----------~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~ 84 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQT----------PEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD 84 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCC----------HHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC
Confidence 35555544 455579997631 1100 0012344444 489999998744 45666777777777644
Q ss_pred EEEecCCC-ChhhHHHHHHHHhccCCc-EEEccCC
Q 019500 127 VVCITEGI-PQHDMVRVKAALNNQSKT-RLVGPNC 159 (340)
Q Consensus 127 vvi~t~Gf-~e~~~~~l~~~aar~~gi-rviGPNc 159 (340)
+.++..|. ++++.+++ ++.|+ ++++|.+
T Consensus 85 i~vivGG~~~~~~~~~l-----~~~Gvd~~~~~gt 114 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDEL-----KEMGVAEIFGPGT 114 (132)
T ss_pred CEEEEeCCCChHhHHHH-----HHCCCCEEECCCC
Confidence 44556664 44444443 46777 6888886
No 307
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=86.40 E-value=4.4 Score=36.83 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=66.5
Q ss_pred CcccccCcCCeEEEEeCCCCCcchHHHHHHHHcC-CeEEEee------CCCCCCcee-cCcccccCHHHhhcc-CCCcEE
Q 019500 33 PAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYG-TKMVGGV------TPKKGGTEH-LGLPVFNTVAEAKAE-TKANAS 103 (340)
Q Consensus 33 ~l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G-~~vv~~V------nP~~~g~~i-~G~p~y~sl~dip~~-~~vDla 103 (340)
||+.=|.-++..+.|.||||-.|+-..+.+.+.+ |..|+.+ +|... +.+ .-..=|..+++..+. ..+|+.
T Consensus 9 klrEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~ 87 (238)
T KOG4039|consen 9 KLREDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVL 87 (238)
T ss_pred HHHHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceE
Confidence 4555566667777888999999999999988874 5544443 33321 111 111223446666543 468988
Q ss_pred EEec---------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 104 AIYV---------------PPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 104 vi~v---------------p~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
.-+. -.+.+....+.|-++|++.++.+++
T Consensus 88 FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS 131 (238)
T KOG4039|consen 88 FCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS 131 (238)
T ss_pred EEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence 7653 4567888999999999999888876
No 308
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=86.29 E-value=6.2 Score=38.88 Aligned_cols=109 Identities=19% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHc--------CC--eEEEeeCCCCCCc-eecCcc---cccCH-----HHhhccCCCc
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEY--------GT--KMVGGVTPKKGGT-EHLGLP---VFNTV-----AEAKAETKAN 101 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~--------G~--~vv~~VnP~~~g~-~i~G~p---~y~sl-----~dip~~~~vD 101 (340)
+.++|.|+|. |..|+.+++.|.+. |. +++...+.+..-. .+.+.+ ...+. .++.....+|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 5678899999 99999888876642 33 4555555543101 122222 11223 3333333688
Q ss_pred EEEEecCh--hhH--HHHHHHHHHcCCcEEEEecCC---CChhhHHHHHHHHhccCCcEEE
Q 019500 102 ASAIYVPP--PFA--AAAILEAMEAELDLVVCITEG---IPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 102 lavi~vp~--~~v--~~~v~ea~~~Gvk~vvi~t~G---f~e~~~~~l~~~aar~~girvi 155 (340)
+++-.++. +.. .+.+.+++++|.+. .|+. ++.. -.+|.+.+ +++|..+.
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~~-~~el~~~A-~~~g~~l~ 136 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLALH-YHELREAA-EKNGVKLL 136 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHhh-HHHHHHHH-HHhCCeEE
Confidence 88877665 233 48899999999875 3553 2222 44566655 67775554
No 309
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.16 E-value=4.5 Score=34.65 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=55.2
Q ss_pred CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEec----ChhhHHHHHHHHHHcCCcE
Q 019500 53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----p~~~v~~~v~ea~~~Gvk~ 126 (340)
..|..+.. .|.+.||++++. ++-.. +++ ++.+.+ +++|++-+.. .-....++++.+-++|.+.
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~--e~~--------v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ--EEF--------IKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCC
Confidence 35655444 556679997742 22111 111 344444 4789887754 3345677778888888755
Q ss_pred EEEecCC---CChhhHHHHHHHHhccCCcE-EEccCC
Q 019500 127 VVCITEG---IPQHDMVRVKAALNNQSKTR-LVGPNC 159 (340)
Q Consensus 127 vvi~t~G---f~e~~~~~l~~~aar~~gir-viGPNc 159 (340)
..|+-.| +++++..+..+.+ ++.|+. +.||..
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l-~~~Gv~~vF~pgt 119 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRF-KEMGFDRVFAPGT 119 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHH-HHcCCCEEECcCC
Confidence 5455566 4666655443444 677764 777764
No 310
>PRK04148 hypothetical protein; Provisional
Probab=86.14 E-value=1.6 Score=37.43 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=51.3
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-eCCCCCCce--ecCcccccCHHHhhcc-----CCCcEEEEecCh-hh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTE--HLGLPVFNTVAEAKAE-----TKANASAIYVPP-PF 111 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-VnP~~~g~~--i~G~p~y~sl~dip~~-----~~vDlavi~vp~-~~ 111 (340)
+..+|+++|+ | .|..++..|.+.|+++++. +||+.- +. -.++.+. .+|+.++ .+.|++.-..|| +.
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV-~~a~~~~~~~v--~dDlf~p~~~~y~~a~liysirpp~el 90 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAV-EKAKKLGLNAF--VDDLFNPNLEIYKNAKLIYSIRPPRDL 90 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHH-HHHHHhCCeEE--ECcCCCCCHHHHhcCCEEEEeCCCHHH
Confidence 3456888899 6 7877888999999997743 566531 10 1122222 2222211 257998888876 55
Q ss_pred HHHHHHHHHHcCCcEEE
Q 019500 112 AAAAILEAMEAELDLVV 128 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~vv 128 (340)
++.+++-|-+.|+..++
T Consensus 91 ~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 91 QPFILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 66666666677888744
No 311
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=86.09 E-value=3.5 Score=40.60 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=59.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--cccc--cCH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG---------TE-----------------HLG--LPVF--NTV 91 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g---------~~-----------------i~G--~p~y--~sl 91 (340)
++|.|.|. |++|+.+.|.+.+. ++++++ ||--..- ++ +.| ++++ +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vva-iNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 80 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVA-INDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 80 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEE-EecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCCh
Confidence 58889999 99999999986643 677774 3321100 00 123 2334 257
Q ss_pred HHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 92 AEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 92 ~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
+++|= +.++|+++.|+......+.+...++.|++.++ +|+
T Consensus 81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~-iSa 121 (331)
T PRK15425 81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTG 121 (331)
T ss_pred hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEE-eCC
Confidence 77763 24699999999999888889999999999865 454
No 312
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=85.83 E-value=3.6 Score=39.12 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=48.9
Q ss_pred EeCCCCCcchHHHHHHHHcC--CeEEEeeC--CCCCC----cee-------cCcccccCHHHhhccCCCcEEEEec---C
Q 019500 47 CQGITGKNGTFHTEQAIEYG--TKMVGGVT--PKKGG----TEH-------LGLPVFNTVAEAKAETKANASAIYV---P 108 (340)
Q Consensus 47 VvGasgk~G~~v~~~l~~~G--~~vv~~Vn--P~~~g----~~i-------~G~p~y~sl~dip~~~~vDlavi~v---p 108 (340)
|.|++|-+|+.+++.|++.| +++. .++ +...- ... ..+.-+.++.++.+ ++|+++-+- +
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr-~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVR-VLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEE-EcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 56999999999999999998 5543 332 22100 001 12223335555555 578776652 1
Q ss_pred h--------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 109 P--------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 109 ~--------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
. +.+..+++.|.+.||+.+| +|+
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV-ytS 115 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLV-YTS 115 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEc
Confidence 1 2234577888888888865 444
No 313
>PRK10949 protease 4; Provisional
Probab=85.69 E-value=3.3 Score=44.17 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=49.8
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCC-CcH---HHHHHHHHHhC-CCCCEEEEEeCCCCCCCCc-ccccCcccccccccc
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGG-TAE---EDAAALIKESG-TEKPIVAFIAGLTAPPGRR-MGHAGVDVYTIFGSA 295 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g-~~~---~~~~~f~~a~r-~~KPVvvlk~Grs~~~g~~-~sHtg~~~~~~~~~a 295 (340)
++.+.|+...+||+.+.|+|.+++.| ... ++-++-++..| .+|||+++--.- ...+-- +||+. +.|-.=-..
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyLASaAD-~I~l~P~G~ 176 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDSY-SQGQYYLASFAN-KIYLSPQGV 176 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecCc-cchhhhhhhhCC-EEEECCCce
Confidence 44555666778999999999999863 222 22333333334 689999983222 221211 33332 000000002
Q ss_pred eecCCC-CcHHHHHHHHHHcCCee
Q 019500 296 IVSGGK-GTAQDKIKTLREAGVTV 318 (340)
Q Consensus 296 la~~~~-g~~~~~~a~~~qaGvv~ 318 (340)
+...+- ....-+..+|++.||-.
T Consensus 177 v~~~G~~~~~~~~k~lLdKlGV~~ 200 (618)
T PRK10949 177 VDLHGFATNGLYYKSLLDKLKVST 200 (618)
T ss_pred EEEeeeecchhhHHHHHHHcCCeE
Confidence 211111 13345789999999874
No 314
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.66 E-value=2.6 Score=38.16 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=63.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-ecCcccccC------------HHHhhccCCCcEEEEecC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-HLGLPVFNT------------VAEAKAETKANASAIYVP 108 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-i~G~p~y~s------------l~dip~~~~vDlavi~vp 108 (340)
+.+|+|+|+ |..|..++++|...|..-+..+|...-..+ +.-...|.. +.+-..+.+||+-+...+
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 346778899 559999999999999885657776542111 111111111 111121224566555443
Q ss_pred hhhH--HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 109 PPFA--AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 109 ~~~v--~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
.... .+...+..+ .... |+.+.. +.+....+.+.+ ++++++++-..|.|+.-
T Consensus 98 ~~~~~~~~~~~~~~~-~~dv-Vi~~~d-~~~~~~~ln~~c-~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 98 EDSLSNDSNIEEYLQ-KFTL-VIATEE-NYERTAKVNDVC-RKHHIPFISCATYGLIG 151 (198)
T ss_pred cccccchhhHHHHHh-CCCE-EEECCC-CHHHHHHHHHHH-HHcCCCEEEEEeecCEE
Confidence 2221 233333332 4454 434433 233344455665 78899988877777653
No 315
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=85.65 E-value=4 Score=44.95 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=67.9
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH-------cCCe--EEEeeCCCCCCceecCccc--c----------cCHHH---h
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE-------YGTK--MVGGVTPKKGGTEHLGLPV--F----------NTVAE---A 94 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~-------~G~~--vv~~VnP~~~g~~i~G~p~--y----------~sl~d---i 94 (340)
..+.++|+++|. |..|+.+++.+.+ .|++ +++..|.+..--.-.|+.. + .++++ +
T Consensus 462 ~~~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T PRK09436 462 SDQVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRL 540 (819)
T ss_pred ccccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 447899999998 9999988876543 2443 5554443220000112110 0 11222 2
Q ss_pred hcc--CCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCC---CCh--hhHHHHHHHHhccCCcEEE
Q 019500 95 KAE--TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG---IPQ--HDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 95 p~~--~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~G---f~e--~~~~~l~~~aar~~girvi 155 (340)
... .+.|++|.|++.........+++++|++.+ |+. .+. +...+|.+.+ +++|.++.
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV---taNK~~~a~~~~~~~el~~~a-~~~~~~~~ 604 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV---TPNKKANTSSYAYYHQLREAA-RKSRRKFL 604 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE---cCCchhccCCHHHHHHHHHHH-HHcCCeEE
Confidence 211 124899999999888889999999999862 442 221 3456677665 78887766
No 316
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.51 E-value=4.3 Score=40.18 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=28.9
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+..+|+|+|+ |..|..++++|...|+.-+..||+..
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3456888899 88999999999999987555777654
No 317
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.50 E-value=4.8 Score=38.45 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=79.8
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccccc-----------CHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN-----------TVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~-----------sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |..|..++++|...|..-+..||+..-...-.+...+. -+.+-..+.+|++-|...+..
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 445777799 88999999999999976455777654211111222221 122222223467666666554
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc---ccCCCcccccCCCCCCCCCcEEEEe
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV---IKPGECKIGIMPGYIHKPGRIGIVS 187 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi---~~p~~~~~~~~~~~~~~~G~valvS 187 (340)
..++.+++....+...+| .+.+-. .....+.+.+ ++++++++- |+|. ++|.++. |+=++
T Consensus 109 i~~e~~~~ll~~~~D~VI-daiD~~-~~k~~L~~~c-~~~~ip~I~--~gGag~k~dp~~~~-------------~~di~ 170 (268)
T PRK15116 109 ITPDNVAEYMSAGFSYVI-DAIDSV-RPKAALIAYC-RRNKIPLVT--TGGAGGQIDPTQIQ-------------VVDLA 170 (268)
T ss_pred cChhhHHHHhcCCCCEEE-EcCCCH-HHHHHHHHHH-HHcCCCEEE--ECCcccCCCCCeEE-------------EEeee
Confidence 445666666655666644 454432 2233455665 788898873 3443 3333222 34444
Q ss_pred cCh--HHHHHHHHHHHh-CCC
Q 019500 188 RSG--TLTYEAVFQTTA-VGL 205 (340)
Q Consensus 188 QSG--~l~~~~~~~~~~-~gi 205 (340)
++- .|+..+-..+++ +|+
T Consensus 171 ~t~~~pla~~~R~~lr~~~~~ 191 (268)
T PRK15116 171 KTIQDPLAAKLRERLKSDFGV 191 (268)
T ss_pred cccCChHHHHHHHHHHHhhCC
Confidence 443 355566666665 455
No 318
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.46 E-value=2 Score=43.15 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=51.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCc-----ccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGL-----PVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~-----p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
+|.|+|. |..|..+++.|.+.|++++ +.|++. ....-. ....+.+.+++ +.|++|.+.+....-+.+++
T Consensus 5 ~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~--~~dlvV~s~gi~~~~~~l~~ 78 (418)
T PRK00683 5 RVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPE--QVDLVVRSPGIKKEHPWVQA 78 (418)
T ss_pred eEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhc--CCCEEEECCCCCCCcHHHHH
Confidence 4677798 8888888899999998755 677554 211111 11223334443 47999888766555678889
Q ss_pred HHHcCCcE
Q 019500 119 AMEAELDL 126 (340)
Q Consensus 119 a~~~Gvk~ 126 (340)
|.++|++.
T Consensus 79 A~~~g~~v 86 (418)
T PRK00683 79 AIASHIPV 86 (418)
T ss_pred HHHCCCcE
Confidence 99988863
No 319
>PRK14851 hypothetical protein; Provisional
Probab=85.41 E-value=3.6 Score=44.35 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=55.2
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----e------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H------LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i------~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |..|+.++.+|...|..-+..||+..-... + .|.+--.-+++...+.++++-|.+.+..
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 446777799 779999999999988764445554431110 0 1211111122222122345555555544
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
...+.+.+.++ ++..||-.+..|+-+....+.+.+ +++++.++
T Consensus 122 i~~~n~~~~l~-~~DvVid~~D~~~~~~r~~l~~~c-~~~~iP~i 164 (679)
T PRK14851 122 INADNMDAFLD-GVDVVLDGLDFFQFEIRRTLFNMA-REKGIPVI 164 (679)
T ss_pred CChHHHHHHHh-CCCEEEECCCCCcHHHHHHHHHHH-HHCCCCEE
Confidence 44455555554 566544333222222222333443 56677666
No 320
>PRK10433 putative RNA methyltransferase; Provisional
Probab=85.30 E-value=11 Score=35.05 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=26.0
Q ss_pred CeEEEEeCCC--CCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGIT--GKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGas--gk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.++||++... ++.| .++|.+.++|+.-++.|||+.
T Consensus 2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~ 38 (228)
T PRK10433 2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQA 38 (228)
T ss_pred ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCC
Confidence 4678888873 2344 467899999998666899985
No 321
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=85.03 E-value=5.5 Score=37.14 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
|+|.|++|-.|+.+++.|.+.|++++ .++.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~-~~~r 32 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVR-GLDR 32 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEE-EEeC
Confidence 78889999999999999999999877 4443
No 322
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.01 E-value=0.63 Score=41.46 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=40.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce---------------------------ecCcccccCHHHhhc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE---------------------------HLGLPVFNTVAEAKA 96 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~---------------------------i~G~p~y~sl~dip~ 96 (340)
+|.|+|+ |.||+.++..+...|+++. .++++....+ ...+....+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 4667799 9999999999999999954 4444331000 12344556777776
Q ss_pred cCCCcEEEEecChhh
Q 019500 97 ETKANASAIYVPPPF 111 (340)
Q Consensus 97 ~~~vDlavi~vp~~~ 111 (340)
+.|+++-++|.+.
T Consensus 78 --~adlViEai~E~l 90 (180)
T PF02737_consen 78 --DADLVIEAIPEDL 90 (180)
T ss_dssp --TESEEEE-S-SSH
T ss_pred --hhheehhhccccH
Confidence 3899999998754
No 323
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=84.99 E-value=27 Score=33.97 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=83.3
Q ss_pred ecChhhHHHHHHHHHHcCCcEEEEecCCCChhh---HHHHHHHHhccCCcEEEccCCCC--cccCCCccccc--CCCC--
Q 019500 106 YVPPPFAAAAILEAMEAELDLVVCITEGIPQHD---MVRVKAALNNQSKTRLVGPNCPG--VIKPGECKIGI--MPGY-- 176 (340)
Q Consensus 106 ~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~---~~~l~~~aar~~girviGPNc~G--i~~p~~~~~~~--~~~~-- 176 (340)
..|++.+..+.+++++.++-+++ +....+... .......+ .+.++++|.|.+-- +-+.......+ .|..
T Consensus 63 ~~~~~~a~~~~~~Li~~~V~aii-~~~~~ss~~~~~~~~v~~~~-~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~ 140 (377)
T cd06379 63 PNPIQTALSVCEQLISNQVYAVI-VSHPPTSNDHLTPTSVSYTA-GFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSH 140 (377)
T ss_pred CChhhHHHHHHHHHhhcceEEEE-EeCCCCCcccccHHHHHHHh-hCCCCcEEecccCCccccCccccccEEEecCCHHH
Confidence 45677777777787777776644 322212111 22223333 67899999886522 11211111111 1110
Q ss_pred ----------CCCCCcEEEEecChHH----HHHHHHHHHhCCC----CceEEeecCCCCCCCCCHHHHHHHhhcCCCccE
Q 019500 177 ----------IHKPGRIGIVSRSGTL----TYEAVFQTTAVGL----GQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEG 238 (340)
Q Consensus 177 ----------~~~~G~valvSQSG~l----~~~~~~~~~~~gi----G~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~ 238 (340)
....-.|++|.++... ...+.+.+++.|+ -+......-.. +.++...|.-+.. .+.++
T Consensus 141 ~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~---~~d~~~~l~~ik~-~~~~v 216 (377)
T cd06379 141 QADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPG---EKNVTSLLQEAKE-LTSRV 216 (377)
T ss_pred HHHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCc---hhhHHHHHHHHhh-cCCeE
Confidence 1455689999998763 3445556666776 44444444222 4567777877754 56788
Q ss_pred EEEEEccCCCcHHHHHHHHHHhC
Q 019500 239 IILIGEIGGTAEEDAAALIKESG 261 (340)
Q Consensus 239 I~ly~E~~g~~~~~~~~f~~a~r 261 (340)
|+++.. ..++..|+++++
T Consensus 217 Ivl~~~-----~~~~~~l~~qa~ 234 (377)
T cd06379 217 ILLSAS-----EDDAAVIYRNAG 234 (377)
T ss_pred EEEEcC-----HHHHHHHHHHHH
Confidence 888866 468889998875
No 324
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.83 E-value=1.9 Score=42.53 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=41.1
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHH--HhhccCCCcEEEEe
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVA--EAKAETKANASAIY 106 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~--dip~~~~vDlavi~ 106 (340)
..-+|+|+|+ |.||...+++|.+.|+..++.+|... .. .-|..+. .+.-..+.|++|.+
T Consensus 173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~~----~~~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--LT----LPYRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--cc----cchhhhhhhhhhcccCCCEEEEc
Confidence 3457888899 99999999999999987666899886 21 1133322 11111258999986
No 325
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.61 E-value=5.9 Score=37.06 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=27.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
..+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 446778899 88999999999999987555777654
No 326
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=84.50 E-value=2.1 Score=41.75 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=57.9
Q ss_pred cEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC
Q 019500 182 RIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG 261 (340)
Q Consensus 182 ~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r 261 (340)
.|++|.-+|++.. .+.+.+ .+++ -+..+.|+....||+++.|+|.+++-|-..-......++++
T Consensus 60 ~Iavi~~~G~I~~--------~~~~~~---~~~~-----~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~ 123 (317)
T COG0616 60 VIAVIHVEGAIVA--------GGGPLR---FIGG-----DDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALK 123 (317)
T ss_pred EEEEEEeeeeeec--------CCCccc---cccH-----HHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHH
Confidence 6999999998752 233333 3333 35789999999999999999999987755544444444443
Q ss_pred ---CCCCEEEEEeCCCCCC
Q 019500 262 ---TEKPIVAFIAGLTAPP 277 (340)
Q Consensus 262 ---~~KPVvvlk~Grs~~~ 277 (340)
..|||+++..+-...+
T Consensus 124 ~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 124 RLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred HHhhcCCEEEEECCeecch
Confidence 5559999998877763
No 327
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=84.33 E-value=9.3 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
.+|+|.|++|-+|+.+++.|.+.|++++..+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~ 36 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATV 36 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3578889999999999999999999976444
No 328
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.24 E-value=4.8 Score=39.63 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+.+|+|+|+ |..|..++++|...|..-+..||+..
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 446778899 89999999999999986555888764
No 329
>PRK06179 short chain dehydrogenase; Provisional
Probab=84.21 E-value=6.5 Score=36.16 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=44.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~~v~ea~~~ 122 (340)
.|+|.|+++.+|..+++.|.+.|++++ .+..+. +.... . . ++. +..+...++.+.++++++.+.
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~-~~~r~~--~~~~~---------~-~--~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVF-GTSRNP--ARAAP---------I-P--GVELLELDVTDDASVQAAVDEVIAR 70 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEE-EEeCCh--hhccc---------c-C--CCeeEEeecCCHHHHHHHHHHHHHh
Confidence 478889999999999999999999966 444332 11110 0 0 111 222344566666666666543
Q ss_pred -C-CcEEEEecCCC
Q 019500 123 -E-LDLVVCITEGI 134 (340)
Q Consensus 123 -G-vk~vvi~t~Gf 134 (340)
| +.. ++...|+
T Consensus 71 ~g~~d~-li~~ag~ 83 (270)
T PRK06179 71 AGRIDV-LVNNAGV 83 (270)
T ss_pred CCCCCE-EEECCCC
Confidence 2 454 4456664
No 330
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=84.16 E-value=4.6 Score=41.25 Aligned_cols=87 Identities=16% Similarity=0.056 Sum_probs=59.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc---CCeEEEeeCCCCCC---------cee------------------cC--ccccc
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGG---------TEH------------------LG--LPVFN 89 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~---G~~vv~~VnP~~~g---------~~i------------------~G--~p~y~ 89 (340)
.++|.|.|. |++|+.+.|.+.+. .++++ .||-...- +.+ .| ++++.
T Consensus 75 ~ikVgINGF-GRIGR~vlR~~~~~~~~~ievV-aINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 75 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-VVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred eEEEEEECC-ChHHHHHHHHHHHccCCCeEEE-EECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 489999999 99999999986643 56777 45531100 111 12 22222
Q ss_pred --CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEec
Q 019500 90 --TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 90 --sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
+.++++= +.++|+|+.++......+.+...++.|.+.|+ +|
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~-iS 196 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI-IT 196 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEE-EC
Confidence 2335542 24799999999999999999999999999855 55
No 331
>PLN02778 3,5-epimerase/4-reductase
Probab=83.61 E-value=6.7 Score=37.39 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMV 70 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv 70 (340)
+...+|+|.|++|-.|+.+++.|.+.|++++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~ 37 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFH 37 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence 3456799999999999999999999999865
No 332
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.54 E-value=5.7 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=26.7
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
..+|+|+|+ |.+|..++++|...|..-+..+|+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 335677799 8899999999999998755577765
No 333
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=83.49 E-value=2.3 Score=44.96 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK 258 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~ 258 (340)
.+++|++|.-+|.+... .+. .-.+|.+ ++.+.|+...+||++|+|+|.+.+.|-..-......+
T Consensus 306 ~~~~vavI~~~G~I~~~-------~~~----~~~~~~~-----~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~ 369 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADG-------RDT----EGNTGGD-----TVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRR 369 (584)
T ss_pred CCCeEEEEEEEEEEcCC-------CCc----ccccCHH-----HHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHH
Confidence 46789999999987421 110 0012222 4678889999999999999999987654333333333
Q ss_pred Hh---C-CCCCEEEEEeCCCCC
Q 019500 259 ES---G-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 259 a~---r-~~KPVvvlk~Grs~~ 276 (340)
++ + .+||||+.-.|-...
T Consensus 370 ~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred HHHHHHhCCCcEEEEECCcccc
Confidence 33 3 569999998886554
No 334
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=83.41 E-value=3.7 Score=36.64 Aligned_cols=53 Identities=9% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEe---CCCCC
Q 019500 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIA---GLTAP 276 (340)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~---Grs~~ 276 (340)
+.+.|+.+.+|+ .+.|++++.+.|-....+.+++.+++ ..||||++-- |....
T Consensus 18 l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aas 74 (187)
T cd07020 18 LERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAAS 74 (187)
T ss_pred HHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchh
Confidence 466777777766 89999999988877888888888776 7899999886 66544
No 335
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=83.31 E-value=5.8 Score=37.38 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=52.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCccc-------ccCHHHhhccCCCcEEEEecChh---hHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPV-------FNTVAEAKAETKANASAIYVPPP---FAA 113 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~-------y~sl~dip~~~~vDlavi~vp~~---~v~ 113 (340)
.|.|.|. ..-|+.+++.|.+.|+++++-|--.++..+-.+.++ ...+.+...+++++++|++++|- ...
T Consensus 4 ~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~ 82 (248)
T PRK08057 4 RILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA 82 (248)
T ss_pred eEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence 4556675 346888999998889885543332221111122232 23566666666899999999873 345
Q ss_pred HHHHHHHHcCCcEEE
Q 019500 114 AAILEAMEAELDLVV 128 (340)
Q Consensus 114 ~~v~ea~~~Gvk~vv 128 (340)
.+.+.|.+.|++.+=
T Consensus 83 ~a~~ac~~~~ipyiR 97 (248)
T PRK08057 83 NAAAACRALGIPYLR 97 (248)
T ss_pred HHHHHHHHhCCcEEE
Confidence 577777788888753
No 336
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=83.25 E-value=1.7 Score=44.09 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=48.4
Q ss_pred ccccCc-CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCcccccCHHHhhcc-CCCcEEEEecC
Q 019500 35 PAVFVD-KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE---HLGLPVFNTVAEAKAE-TKANASAIYVP 108 (340)
Q Consensus 35 ~~lf~p-~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~---i~G~p~y~sl~dip~~-~~vDlavi~vp 108 (340)
.++|.. +..+|+|+|| |.||..++++|.+.|+..++.+|..... .+ -.|. -|-+++++++. .+.|+++.+|.
T Consensus 170 ~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 170 KRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-EAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred HHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-eeecHHHHHHhhhhCCEEEEecC
Confidence 455643 5667889999 9999999999999998877799987621 11 1231 12234444322 14799888874
Q ss_pred h
Q 019500 109 P 109 (340)
Q Consensus 109 ~ 109 (340)
+
T Consensus 248 a 248 (414)
T COG0373 248 A 248 (414)
T ss_pred C
Confidence 4
No 337
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.23 E-value=5 Score=37.51 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
..+|+|+|+ |..|..++++|...|..-+..+|+..
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 346778899 88999999999999987555787765
No 338
>PRK14852 hypothetical protein; Provisional
Probab=83.08 E-value=4.5 Score=45.18 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=58.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCce-----e------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE-----H------LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~-----i------~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ |..|+.++.+|...|..-+..+|...-... + .|.+--..+++...+.++++=|.+.+..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 445777799 779999999999988764445554331110 0 1211111122222222345555555444
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPG 161 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~G 161 (340)
...+.+++.+ .++..+|-.+..|+.+....+.+.| +++|+.++--.+.|
T Consensus 411 I~~en~~~fl-~~~DiVVDa~D~~~~~~rr~l~~~c-~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 VAAETIDAFL-KDVDLLVDGIDFFALDIRRRLFNRA-LELGIPVITAGPLG 459 (989)
T ss_pred CCHHHHHHHh-hCCCEEEECCCCccHHHHHHHHHHH-HHcCCCEEEeeccc
Confidence 4445555544 3566555433444322223333443 56666666544443
No 339
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.88 E-value=3.2 Score=41.80 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=49.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc------ee--cCcccc-cCH-HHhhccCCCcEEEEecChhhHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT------EH--LGLPVF-NTV-AEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~------~i--~G~p~y-~sl-~dip~~~~vDlavi~vp~~~v~ 113 (340)
+|+|+|+ |+.|...++.|.+.|+++. .++++.... ++ .|+.++ .+. ++... ++|++|.++.....-
T Consensus 7 ~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~~~~ 82 (450)
T PRK14106 7 KVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVPLDS 82 (450)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCCCCC
Confidence 4667798 6699999999999999865 677653100 01 144432 222 23333 589999877644445
Q ss_pred HHHHHHHHcCCcE
Q 019500 114 AAILEAMEAELDL 126 (340)
Q Consensus 114 ~~v~ea~~~Gvk~ 126 (340)
+.+..|.++|++.
T Consensus 83 ~~~~~a~~~~i~~ 95 (450)
T PRK14106 83 PPVVQAHKKGIEV 95 (450)
T ss_pred HHHHHHHHCCCcE
Confidence 5677777777643
No 340
>PLN02206 UDP-glucuronate decarboxylase
Probab=82.87 E-value=4.2 Score=41.40 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.4
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
+.++..+|+|.|++|-.|+.+++.|++.|++++..
T Consensus 115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l 149 (442)
T PLN02206 115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVV 149 (442)
T ss_pred cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence 45577889999999999999999999999997744
No 341
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.81 E-value=12 Score=36.50 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=49.9
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeC--CCCC-Cc--------eecC----cccccCHHHhhccCCCcEEEEe
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GT--------EHLG----LPVFNTVAEAKAETKANASAIY 106 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~Vn--P~~~-g~--------~i~G----~p~y~sl~dip~~~~vDlavi~ 106 (340)
.+|+|+|+ |.+|..++..+...|. + +..+| |... ++ ...+ +....+.+++. +.|++|++
T Consensus 7 ~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI~t 81 (321)
T PTZ00082 7 RKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVIVT 81 (321)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEEEC
Confidence 46777898 9999988877777775 5 33544 4421 11 1112 22234676664 48999986
Q ss_pred c---------------------ChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 107 V---------------------PPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 107 v---------------------p~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
. ..+...+++++..+.+-++.++..+
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5 1223556666777777665444443
No 342
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=82.54 E-value=4.4 Score=39.08 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC
Q 019500 44 RVICQGITGKNGTFHTEQAIEY-GTKMVGGVT 74 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn 74 (340)
+|+|.|++|-.|+.+++.|++. |++++ +++
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~-~~~ 33 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVY-GMD 33 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEE-EEe
Confidence 5889999999999999999876 68877 444
No 343
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=82.53 E-value=4.6 Score=36.77 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
+|+|.|+++..|..+++.+.+.|++++ .++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVI-ATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 477889999999999999999999866 4443
No 344
>PRK10949 protease 4; Provisional
Probab=82.52 E-value=2.8 Score=44.62 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=55.2
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIK 258 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~ 258 (340)
..+.||+|.-+|.+... -+... .+|. -++.+.|+-..+||++|+|+|.+.+.|-.........+
T Consensus 324 ~~~~Iavi~~~G~I~~g---------~~~~g--~~~~-----~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~ 387 (618)
T PRK10949 324 TGGSIAVIFANGAIMDG---------EETPG--NVGG-----DTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRA 387 (618)
T ss_pred CCCeEEEEEEEEEEcCC---------CCcCC--CcCH-----HHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHH
Confidence 35789999999988421 11000 1222 24678899999999999999999988765444444434
Q ss_pred Hh---C-CCCCEEEEEeCCCCC
Q 019500 259 ES---G-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 259 a~---r-~~KPVvvlk~Grs~~ 276 (340)
++ | .+||||+.-.+-.+.
T Consensus 388 ~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred HHHHHHhcCCcEEEEECCCCcc
Confidence 33 3 679999997665444
No 345
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=82.18 E-value=8 Score=36.23 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=48.8
Q ss_pred EEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce--------ecC-cccccCHHHhhcc--CCCcEEEEecCh---
Q 019500 45 VICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE--------HLG-LPVFNTVAEAKAE--TKANASAIYVPP--- 109 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~--------i~G-~p~y~sl~dip~~--~~vDlavi~vp~--- 109 (340)
|+|.|++|-+|+.+++.|.+.|+ +++ .++....... +.+ +.....++.+.+. .++|+++-+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~ 79 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDIL-VVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDT 79 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEE-EEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCc
Confidence 46779999999999999999997 454 5543221111 111 1111123333320 258988866521
Q ss_pred -------------hhHHHHHHHHHHcCCcEEEEecC
Q 019500 110 -------------PFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 110 -------------~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
.....+++.|.+.+++ +|.+++
T Consensus 80 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 114 (314)
T TIGR02197 80 TETDGEYMMENNYQYSKRLLDWCAEKGIP-FIYASS 114 (314)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCCc-EEEEcc
Confidence 1234467778788876 444554
No 346
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=82.16 E-value=9 Score=31.68 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=50.6
Q ss_pred cchHHHH-HHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh----hhHHHHHHHHHHcCCcEEE
Q 019500 54 NGTFHTE-QAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP----PFAAAAILEAMEAELDLVV 128 (340)
Q Consensus 54 ~G~~v~~-~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~----~~v~~~v~ea~~~Gvk~vv 128 (340)
.|..... .+...||++++. .+. +|.-.-++.+.+ .++|++.++... +.+.+.++.+.+.|.+.+.
T Consensus 14 lG~~~~~~~l~~~G~~vi~l-G~~--------vp~e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~ 83 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYT-GLR--------QTPEEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDIL 83 (122)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CCC--------CCHHHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCE
Confidence 4544444 455579997732 111 222222334333 479999999744 4445556666677664444
Q ss_pred EecCCCChh-hHHHHHHHHhccCCc-EEEccCCC
Q 019500 129 CITEGIPQH-DMVRVKAALNNQSKT-RLVGPNCP 160 (340)
Q Consensus 129 i~t~Gf~e~-~~~~l~~~aar~~gi-rviGPNc~ 160 (340)
++..|-... +.+++ ++.|+ .+++|+|-
T Consensus 84 i~~GG~~~~~~~~~~-----~~~G~d~~~~~~~~ 112 (122)
T cd02071 84 VVGGGIIPPEDYELL-----KEMGVAEIFGPGTS 112 (122)
T ss_pred EEEECCCCHHHHHHH-----HHCCCCEEECCCCC
Confidence 455553322 23322 46787 58888864
No 347
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=82.06 E-value=8.5 Score=39.18 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=62.7
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccC-----------HHHhhccCCCcEEEEecCh-
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT-----------VAEAKAETKANASAIYVPP- 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~s-----------l~dip~~~~vDlavi~vp~- 109 (340)
+.+|+|+|+ |..|..+++||.-.|..-+..||+..-..+-.|.-.+-+ +.+...+.++|+-+.+...
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 446788899 569999999999999875668887642111122111111 1111222245665544432
Q ss_pred -hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCccc
Q 019500 110 -PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIK 164 (340)
Q Consensus 110 -~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~ 164 (340)
+...+...+.. .+... || .+..+......+.+.+ +++++.++=.+|.|++-
T Consensus 99 ~~~ll~~~~~f~-~~fdi-VI-~t~~~~~~~~~L~~~c-~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 99 PEALLDNDPSFF-SQFTV-VI-ATNLPESTLLRLADVL-WSANIPLLYVRSYGLYG 150 (425)
T ss_pred cchhhhhHHHHh-cCCCE-EE-ECCCCHHHHHHHHHHH-HHcCCCEEEEecccCEE
Confidence 21111111221 23343 32 3444444445565665 67788888777777653
No 348
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.04 E-value=4.1 Score=42.56 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=43.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCcee-----cCcccc-cC------HHHhhccCCCcEEEEecChhh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEH-----LGLPVF-NT------VAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i-----~G~p~y-~s------l~dip~~~~vDlavi~vp~~~ 111 (340)
.++|+|+ |+.|+.+++.|.+.|.+++ .|+++. +.+ .|.+++ .+ +++..- ++.|.++++++.+.
T Consensus 419 hiiI~G~-G~~G~~la~~L~~~g~~vv-vId~d~--~~~~~~~~~g~~~i~GD~~~~~~L~~a~i-~~a~~viv~~~~~~ 493 (558)
T PRK10669 419 HALLVGY-GRVGSLLGEKLLAAGIPLV-VIETSR--TRVDELRERGIRAVLGNAANEEIMQLAHL-DCARWLLLTIPNGY 493 (558)
T ss_pred CEEEECC-ChHHHHHHHHHHHCCCCEE-EEECCH--HHHHHHHHCCCeEEEcCCCCHHHHHhcCc-cccCEEEEEcCChH
Confidence 4677799 9999999999999998866 676654 211 244332 22 333322 26898998988765
Q ss_pred HHH
Q 019500 112 AAA 114 (340)
Q Consensus 112 v~~ 114 (340)
...
T Consensus 494 ~~~ 496 (558)
T PRK10669 494 EAG 496 (558)
T ss_pred HHH
Confidence 443
No 349
>PRK14030 glutamate dehydrogenase; Provisional
Probab=82.03 E-value=11 Score=38.71 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-------eCCCCCC-cee---c------C-c-----ccccC-----H
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-------VTPKKGG-TEH---L------G-L-----PVFNT-----V 91 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-------VnP~~~g-~~i---~------G-~-----p~y~s-----l 91 (340)
.+..+|+|+|. |+.|+..++.|.+.|.++++. .||+.-- +.+ . | + .-|+. -
T Consensus 226 l~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~ 304 (445)
T PRK14030 226 IKGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG 304 (445)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC
Confidence 45678999998 999999999999999998853 4554310 010 0 0 0 01111 1
Q ss_pred HHhhccCCCcEEEEec-ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 92 AEAKAETKANASAIYV-PPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 92 ~dip~~~~vDlavi~v-p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+++.+ .++|+.+-|- ......+.++...+.+++.|+=.+-|....+..++ + ++.|+.++ |.
T Consensus 305 ~~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~i---L-~~rGI~~v-PD 366 (445)
T PRK14030 305 KKPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDK---F-IAAKQLFA-PG 366 (445)
T ss_pred cccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH---H-HHCCCEEe-Cc
Confidence 22222 2466666543 23444556666666788876644445322233322 2 46677665 54
No 350
>PLN02650 dihydroflavonol-4-reductase
Probab=82.00 E-value=10 Score=36.55 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
+-+|+|.|++|-+|+.+++.|.+.|++++..
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 3468899999999999999999999997643
No 351
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.95 E-value=7.8 Score=34.26 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+|+|+|+ |.+|..++++|...|+.-+..+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3677899 88999999999999986444666653
No 352
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.81 E-value=3.7 Score=42.00 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=52.6
Q ss_pred cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c---eecCcccccC---HHHhhccCCCcEEEEe
Q 019500 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T---EHLGLPVFNT---VAEAKAETKANASAIY 106 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~---~i~G~p~y~s---l~dip~~~~vDlavi~ 106 (340)
|..+..-...+|.|+|+ |+.|..+++.|.+.|+++. ..|.+... . +-.|++++.. .+.++ ++|++|..
T Consensus 7 ~~~~~~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~---~~d~vV~S 81 (473)
T PRK00141 7 LSALPQELSGRVLVAGA-GVSGRGIAAMLSELGCDVV-VADDNETARHKLIEVTGVADISTAEASDQLD---SFSLVVTS 81 (473)
T ss_pred hhhcccccCCeEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCChHHHHHHHHhcCcEEEeCCCchhHhc---CCCEEEeC
Confidence 55554434446788898 9999999999999999754 56643210 1 1237776542 23343 37887764
Q ss_pred --cChhhHHHHHHHHHHcCCcE
Q 019500 107 --VPPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 107 --vp~~~v~~~v~ea~~~Gvk~ 126 (340)
+|++. +.+.+|.++|++.
T Consensus 82 pgi~~~~--p~~~~a~~~gi~v 101 (473)
T PRK00141 82 PGWRPDS--PLLVDAQSQGLEV 101 (473)
T ss_pred CCCCCCC--HHHHHHHHCCCce
Confidence 24333 4566777777754
No 353
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.64 E-value=12 Score=34.01 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
.|+|.|+++.+|+.+++.|.+.|++++..
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 47788999999999999999999987743
No 354
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=81.27 E-value=6.3 Score=39.01 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.0
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVT 74 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~-G~~vv~~Vn 74 (340)
++|.|.|. |++|+.+.|.+.+. +++++ .||
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~iv-aiN 33 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVV-AVN 33 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEE-Eec
Confidence 68899999 99999999987654 57777 454
No 355
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=81.14 E-value=9.3 Score=37.13 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=85.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE--EEccCCCCcccCC--CcccccCC
Q 019500 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKPG--ECKIGIMP 174 (340)
Q Consensus 99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir--viGPNc~Gi~~p~--~~~~~~~~ 174 (340)
+-|+++--.....+.+++..|.+.|.+.-|+.+...+..+...+.+.+ +++|++ +|=...+|.+.-. .+-+|.
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L-~~~gI~~~~I~Dsa~~~~~~~vd~VivGa-- 195 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKEL-RQSGIPVTVIVDSAVGAFMSRVDKVLVGA-- 195 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHH-HHcCCceEEEechHHHHHHHhCCEEEECc--
Confidence 467777777889999999999999998778889999987777776666 678865 5655667765432 222332
Q ss_pred CCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEe---------ecCCCCCCCCCHHHHHHHhhcCCCc
Q 019500 175 GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCV---------GIGGDPFNGTNFVDCVTKFIADPQT 236 (340)
Q Consensus 175 ~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~v---------s~Gn~a~~dv~~~d~l~~l~~Dp~T 236 (340)
.....-| ++++++|+...++. |++.+..|--+. -.|+.. -..+.|..+...++|..
T Consensus 196 d~I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v~aesyKf~p~~~~~~~~--~~~~~~~~e~~~~~~~~ 260 (301)
T COG1184 196 DAILANG--ALVNKIGTSPLALA--ARELRVPFYVVAESYKFVPKTLLDTLV--EIELRDPLEVAREEPLG 260 (301)
T ss_pred cceecCC--cEEeccchHHHHHH--HHHhCCCEEEEeeeecccccccCCCcc--eeeccChhhccccCccc
Confidence 1123445 99999999987765 566777764322 234443 34445555555444444
No 356
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=81.12 E-value=9.9 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
+|+|.|++|-+|+.+++.|.+.|++++..++
T Consensus 3 ~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 3 KILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred EEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 5788999999999999999999987543444
No 357
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.08 E-value=5.2 Score=38.88 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=45.5
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
.-.|+|+|.|+.+|+-++.+|.+.|+++. ..|.+. . +++++.. ..|+++.+++.....+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t--~---------~l~e~~~--~ADIVIsavg~~~~v~ 217 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS--T---------DAKALCR--QADIVVAAVGRPRLID 217 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhccc
Confidence 34566779999999999999999999865 666553 1 6888776 4899999998765433
No 358
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.06 E-value=3.9 Score=36.24 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCeEEEEeCCCCCc-chHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500 41 KNTRVICQGITGKN-GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 41 ~~iaViVvGasgk~-G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v 112 (340)
+.-+|+|+|+ |.+ |..++++|.+.|.+ +..+|.+. +++.+... +.|++|.+++...+
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~-V~v~~r~~-----------~~l~~~l~--~aDiVIsat~~~~i 100 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNAT-VTVCHSKT-----------KNLKEHTK--QADIVIVAVGKPGL 100 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCCE-EEEEECCc-----------hhHHHHHh--hCCEEEEcCCCCce
Confidence 3456788899 765 88899999999987 44777542 34555544 48999999988653
No 359
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.01 E-value=4.9 Score=39.95 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
+..+|+|+|+ |..|..++++|...|..-+..||+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3456778899 8899999999999998755578776
No 360
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=81.01 E-value=8.8 Score=32.63 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=54.9
Q ss_pred CcchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEec----ChhhHHHHHHHHHHcCCcE
Q 019500 53 KNGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 53 k~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----p~~~v~~~v~ea~~~Gvk~ 126 (340)
..|..++. .|.+.||++++. ++-.. +++ ++.+.+ +++|++-+.. .-....++++.+.++|.+.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~--e~~--------v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQ--EEF--------IDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC
Confidence 35655555 455579997742 32111 111 334443 4799987754 3355677888888888744
Q ss_pred EEEecCCC---ChhhHHHHHHHHhccCCc-EEEccCC
Q 019500 127 VVCITEGI---PQHDMVRVKAALNNQSKT-RLVGPNC 159 (340)
Q Consensus 127 vvi~t~Gf---~e~~~~~l~~~aar~~gi-rviGPNc 159 (340)
+.++-.|. ++++..+-++.+ ++.|+ ++.||.+
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L-~~~Gv~~vf~pgt 117 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRF-KEMGFDRVFAPGT 117 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHH-HHcCCCEEECcCC
Confidence 54555553 555544333333 67887 4888874
No 361
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=80.96 E-value=7.1 Score=39.12 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+..+|+|+|+ |..|..++++|...|+.-+..||+..
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 3456788899 88999999999999987555777654
No 362
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=80.82 E-value=5.6 Score=35.53 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500 224 VDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 224 ~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~ 276 (340)
.+.|+...+++ .+.|++++.+.|-......+..+.++ ..|||+++-.|....
T Consensus 19 ~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaS 71 (178)
T cd07021 19 ERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAAS 71 (178)
T ss_pred HHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHH
Confidence 34455556666 89999999998888888898888876 789999999887654
No 363
>PLN02306 hydroxypyruvate reductase
Probab=80.76 E-value=3.6 Score=41.31 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=43.7
Q ss_pred eEEEEeCCCCCcchHHHHHHH-HcCCeEEEeeCCCCCCc-e----ecC------------cccccCHHHhhccCCCcEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAI-EYGTKMVGGVTPKKGGT-E----HLG------------LPVFNTVAEAKAETKANASA 104 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~-~~G~~vv~~VnP~~~g~-~----i~G------------~p~y~sl~dip~~~~vDlav 104 (340)
-.|.|+|. |++|+.+++.+. .+|.+++ ..||....+ . ..| +..+.+++++.. ..|+++
T Consensus 166 ktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~--~sDiV~ 241 (386)
T PLN02306 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR--EADVIS 241 (386)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHh--hCCEEE
Confidence 34667799 999999999985 7899876 667653100 0 111 122458999987 489999
Q ss_pred EecCh
Q 019500 105 IYVPP 109 (340)
Q Consensus 105 i~vp~ 109 (340)
+.+|-
T Consensus 242 lh~Pl 246 (386)
T PLN02306 242 LHPVL 246 (386)
T ss_pred EeCCC
Confidence 99884
No 364
>PLN02427 UDP-apiose/xylose synthase
Probab=80.32 E-value=9.1 Score=37.58 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=25.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEe
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGG 72 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~ 72 (340)
..+|+|.|++|-+|+.+++.|.+. |++++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 346889999999999999999987 5876643
No 365
>PRK06223 malate dehydrogenase; Reviewed
Probab=80.06 E-value=19 Score=34.43 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=48.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeC--CCCC-Cce--e------cC--ccc--ccCHHHhhccCCCcEEEEe
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT-KMVGGVT--PKKG-GTE--H------LG--LPV--FNTVAEAKAETKANASAIY 106 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~-~vv~~Vn--P~~~-g~~--i------~G--~p~--y~sl~dip~~~~vDlavi~ 106 (340)
.+|+|+|+ |.+|..++..+...|. +++ .+| +... |.. + .+ .++ ..+.+++. +.|++|++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~---~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIA---GSDVVVIT 77 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHC---CCCEEEEC
Confidence 47788899 9999998888877664 533 444 4321 110 0 01 111 23455554 48999988
Q ss_pred cC--h--------------hhHHHHHHHHHHcCCcEEEEec
Q 019500 107 VP--P--------------PFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 107 vp--~--------------~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
.. . +...+++++..+.+-+.++++.
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~ 118 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 52 2 3455666666666666533333
No 366
>PLN02572 UDP-sulfoquinovose synthase
Probab=79.78 E-value=9.8 Score=38.62 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMV 70 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv 70 (340)
.+|+|.|++|-+|+.+++.|.+.|++++
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~ 75 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVA 75 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 4588899999999999999999999866
No 367
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=79.77 E-value=2.1 Score=45.44 Aligned_cols=174 Identities=11% Similarity=-0.060 Sum_probs=104.1
Q ss_pred eecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC------cEE
Q 019500 81 EHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK------TRL 154 (340)
Q Consensus 81 ~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g------irv 154 (340)
+..|-+.+...+.+++. -+-+..++|.....-.-..+....++.-+.+++++..+.-++-.+...+..+ +.+
T Consensus 306 tn~Gg~gvla~D~l~~~--g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi~~ 383 (598)
T COG1042 306 TNGGGPGVLAADALEER--GLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVL 383 (598)
T ss_pred ecCCCccccchhHHHHc--CCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEEec
Confidence 45677888888888762 3333333333333222233335567777788888876653333333222222 233
Q ss_pred EccCCCCcccCC-CcccccCCCCCCCCCcEEEEecChHHHHHH-HHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhc
Q 019500 155 VGPNCPGVIKPG-ECKIGIMPGYIHKPGRIGIVSRSGTLTYEA-VFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA 232 (340)
Q Consensus 155 iGPNc~Gi~~p~-~~~~~~~~~~~~~~G~valvSQSG~l~~~~-~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~ 232 (340)
-+|++. -.+. ...+.+ .....|+.++++|.|...... ....++.|+++......++.+ ...+.++..|...
T Consensus 384 ~~~~~~--~~~~a~~~~~~---~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~a--~~~l~~~~~~~~~ 456 (598)
T COG1042 384 PPASAD--PEETAEAIIRA---TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVKA--LSALARYRRWLKK 456 (598)
T ss_pred CCCCCC--chhhhHHHHHh---hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHHH--HHHHHHHHHHHHh
Confidence 344444 1111 111222 235678999999999833333 245678899999999999998 7889999999999
Q ss_pred CCCccEEEEEEccCCCcHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCc--ccccC
Q 019500 233 DPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR--MGHAG 285 (340)
Q Consensus 233 Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r~~KPVvvlk~Grs~~~g~~--~sHtg 285 (340)
+-+| .|.|.. ++..+.++++++. ..+ .+|+.
T Consensus 457 ~~~~----~~~~~~-----------------~~~~~~~~e~~~~-l~~~gi~~~~ 489 (598)
T COG1042 457 LRET----PVFEGG-----------------GGTTLDEPEAKEL-LEAYGIPVPA 489 (598)
T ss_pred hccC----cccccC-----------------CccccCchhhhhH-HHHhcCcccc
Confidence 9988 225641 5556666665554 333 45655
No 368
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=79.71 E-value=8.7 Score=36.66 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=54.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEE---EEecChhhHHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPPPFAAAAILEA 119 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDla---vi~vp~~~v~~~v~ea 119 (340)
-.++|.|||+.+|...++.|.+.|++++ .|..+. +... ..++.|++-- .+++- ++.+-++.+..+.++.
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~--~kL~--~la~~l~~~~---~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLI-LVARRE--DKLE--ALAKELEDKT---GVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcH--HHHH--HHHHHHHHhh---CceEEEEECcCCChhHHHHHHHHH
Confidence 3567899999999999999999999987 777765 3221 2233333322 23332 2344567777777777
Q ss_pred HHc--CCcEEEEecCCCC
Q 019500 120 MEA--ELDLVVCITEGIP 135 (340)
Q Consensus 120 ~~~--Gvk~vvi~t~Gf~ 135 (340)
.+. .|.. +|-..||.
T Consensus 79 ~~~~~~Idv-LVNNAG~g 95 (265)
T COG0300 79 KERGGPIDV-LVNNAGFG 95 (265)
T ss_pred HhcCCcccE-EEECCCcC
Confidence 777 4665 45677764
No 369
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=79.68 E-value=4.6 Score=35.33 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500 223 FVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 223 ~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~ 276 (340)
+.+-|.++..++.++.|.+|+.+.|....++....++++ .++||+++-.|....
T Consensus 17 ~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS 71 (162)
T cd07013 17 FAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAAS 71 (162)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhh
Confidence 456677888999999999999998887888888888876 678999888775543
No 370
>PLN02700 homoserine dehydrogenase family protein
Probab=79.59 E-value=9 Score=38.43 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=25.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCcE
Q 019500 99 KANASAIYVPPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~ 126 (340)
+.+++|.|+|...+.+...+++++|++.
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hV 136 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCI 136 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeE
Confidence 3599999999999999999999999986
No 371
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.56 E-value=4.8 Score=41.56 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=44.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCC-ceecCcccccCHHHhhccCCCcEEEEecChhh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGG-TEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g-~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~ 111 (340)
.|+|+|. |++|+.+++.+..+|.+++ +-.+|...- ....|... .+++++.. ..|+++.++....
T Consensus 256 tVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~--~ADIVI~atGt~~ 321 (476)
T PTZ00075 256 TVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVE--TADIFVTATGNKD 321 (476)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHh--cCCEEEECCCccc
Confidence 4667799 8999999999999999854 234665410 11245543 36888776 5899999876443
No 372
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=79.34 E-value=14 Score=35.39 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=25.7
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVG 71 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~ 71 (340)
.+|+|.|++|-+|+.+++.|.+.|++++.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G~~V~~ 35 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKGYEVHG 35 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence 46889999999999999999999998664
No 373
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.33 E-value=3 Score=40.66 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=57.5
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHc-CCeEEEeeCCCCCCce-------ecC--cccccCHHHhhccCCCcEEEEecC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGTE-------HLG--LPVFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~VnP~~~g~~-------i~G--~p~y~sl~dip~~~~vDlavi~vp 108 (340)
.+....+.|+|+ |.+++.+++.+... ..+.++..|+.....+ -.| +.++.+.+++.+ +.|+++.+||
T Consensus 125 ~~~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~--~aDiVitaT~ 201 (325)
T TIGR02371 125 RKDSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVE--GCDILVTTTP 201 (325)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhc--cCCEEEEecC
Confidence 455667788899 99999888877653 4555556666542111 125 345788999886 5999999998
Q ss_pred hhhHHHHHHHHHHcCCcEEEEe
Q 019500 109 PPFAAAAILEAMEAELDLVVCI 130 (340)
Q Consensus 109 ~~~v~~~v~ea~~~Gvk~vvi~ 130 (340)
... +-.-.+.++.|.+..-|.
T Consensus 202 s~~-P~~~~~~l~~g~~v~~vG 222 (325)
T TIGR02371 202 SRK-PVVKADWVSEGTHINAIG 222 (325)
T ss_pred CCC-cEecHHHcCCCCEEEecC
Confidence 754 222345567787754433
No 374
>PLN00203 glutamyl-tRNA reductase
Probab=79.19 E-value=1.8 Score=45.20 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
..+|+|+|+ |.||..+++.|...|.+.+..+|++.
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 346778899 99999999999999986555788765
No 375
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.07 E-value=3.1 Score=40.33 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=52.1
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce----e--cC--cccccCHHHhhccCCCcEEEEecC
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H--LG--LPVFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~----i--~G--~p~y~sl~dip~~~~vDlavi~vp 108 (340)
.+...+|.|+|+ |.+|+.+++.+.. .+.+.++..|+.... ++ + .| +.++.++++... +.|+++-++|
T Consensus 122 ~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~--~aDIVi~aT~ 198 (314)
T PRK06141 122 RKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVR--QADIISCATL 198 (314)
T ss_pred CCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHh--cCCEEEEeeC
Confidence 455677888898 9999999886665 565545577765311 11 1 13 556678887765 5899988887
Q ss_pred hhhHHHHH-HHHHHcCC
Q 019500 109 PPFAAAAI-LEAMEAEL 124 (340)
Q Consensus 109 ~~~v~~~v-~ea~~~Gv 124 (340)
.. ..++ .+.++.|.
T Consensus 199 s~--~pvl~~~~l~~g~ 213 (314)
T PRK06141 199 ST--EPLVRGEWLKPGT 213 (314)
T ss_pred CC--CCEecHHHcCCCC
Confidence 65 2323 34556666
No 376
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=79.00 E-value=7.2 Score=37.04 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.6
Q ss_pred EEEeCCCCCcchHHHHHHHHcC--CeEEEeeC
Q 019500 45 VICQGITGKNGTFHTEQAIEYG--TKMVGGVT 74 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G--~~vv~~Vn 74 (340)
|+|.|++|..|+.+++.|.+.| +++++.+.
T Consensus 2 vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred EEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 6788999999999999999887 56665543
No 377
>PRK08177 short chain dehydrogenase; Provisional
Probab=78.59 E-value=8 Score=34.63 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=45.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAE 123 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~G 123 (340)
.|+|.|+++.+|+.+++.|.+.|++++ .++.+. +... .+.+.... .. ......-.+.+.++++++.+.+
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~------~~~~~~~~-~~-~~~D~~d~~~~~~~~~~~~~~~ 71 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVT-ATVRGP--QQDT------ALQALPGV-HI-EKLDMNDPASLDQLLQRLQGQR 71 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEE-EEeCCC--cchH------HHHhcccc-ce-EEcCCCCHHHHHHHHHHhhcCC
Confidence 477889999999999999999999866 444332 1111 11111110 01 1122344556666666665446
Q ss_pred CcEEEEecCCC
Q 019500 124 LDLVVCITEGI 134 (340)
Q Consensus 124 vk~vvi~t~Gf 134 (340)
+..++ ...|.
T Consensus 72 id~vi-~~ag~ 81 (225)
T PRK08177 72 FDLLF-VNAGI 81 (225)
T ss_pred CCEEE-EcCcc
Confidence 77654 44443
No 378
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=78.56 E-value=8.3 Score=37.67 Aligned_cols=87 Identities=15% Similarity=0.244 Sum_probs=59.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC--ceecC--ccccc-------CHHHhhccCCCcEEEEecChhh-
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLG--LPVFN-------TVAEAKAETKANASAIYVPPPF- 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g--~~i~G--~p~y~-------sl~dip~~~~vDlavi~vp~~~- 111 (340)
+|.|.|..|=+|+..+..|++.|++++ .+|--..| +.+.- .+.|. -|+++.++++||.++=|---..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V 80 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV 80 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence 577888889999999999999999966 33321111 12222 23332 4777777778999997753332
Q ss_pred -----------------HHHHHHHHHHcCCcEEEEecC
Q 019500 112 -----------------AAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 112 -----------------v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
....++.|.+.||+.+| |||
T Consensus 81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~v-FSS 117 (329)
T COG1087 81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI-FSS 117 (329)
T ss_pred chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEE-Eec
Confidence 34578889999999955 776
No 379
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=78.48 E-value=44 Score=29.02 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=48.7
Q ss_pred CCcEEEEecCh-H----HHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHHH
Q 019500 180 PGRIGIVSRSG-T----LTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAA 254 (340)
Q Consensus 180 ~G~valvSQSG-~----l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~ 254 (340)
..+|+++.... . ....+.+...+.++-+.......... +-+...+.+.+.+.|+.++|++... ..+.
T Consensus 124 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~~~------~~a~ 195 (269)
T cd01391 124 WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT--EKGFQALLQLLKAAPKPDAIFACND------EMAA 195 (269)
T ss_pred CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc--cccHHHHHHHHhcCCCCCEEEEcCc------hHHH
Confidence 45566665444 1 12333445555664443333333332 3577888889988888888877744 3556
Q ss_pred HHHHHhC-CC---CCEEEEEeCCCC
Q 019500 255 ALIKESG-TE---KPIVAFIAGLTA 275 (340)
Q Consensus 255 ~f~~a~r-~~---KPVvvlk~Grs~ 275 (340)
.++++++ .+ +.+.++-...+.
T Consensus 196 ~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 196 GALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred HHHHHHHHcCCCCCCCEEEeccccc
Confidence 7777664 22 455555444443
No 380
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=78.44 E-value=18 Score=34.36 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMV 70 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv 70 (340)
..+|+|.|++|-+|+.+++.|.+.|++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~ 33 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTIN 33 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEE
Confidence 34678899999999999999999999865
No 381
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=78.41 E-value=14 Score=35.06 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=60.1
Q ss_pred ccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC-CCceecCcc----cccCH--HH---hhccCCCcEEE
Q 019500 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK-GGTEHLGLP----VFNTV--AE---AKAETKANASA 104 (340)
Q Consensus 35 ~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~-~g~~i~G~p----~y~sl--~d---ip~~~~vDlav 104 (340)
.+.-..+.++|.+.||+|-.|..+++.+..+.|-.+.-|.-++ .|+...+.+ .|.++ .| +.+++.+|..+
T Consensus 12 ~~~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wv 91 (340)
T KOG4354|consen 12 SSVKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWV 91 (340)
T ss_pred cccccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeee
Confidence 3444567899999999999998888888777664444565433 334433322 23222 22 23445689999
Q ss_pred EecChhhHHHHHHHHHHcCCcEE
Q 019500 105 IYVPPPFAAAAILEAMEAELDLV 127 (340)
Q Consensus 105 i~vp~~~v~~~v~ea~~~Gvk~v 127 (340)
.+.|.......++..-...-|..
T Consensus 92 maLPn~vckpfv~~~~s~~gks~ 114 (340)
T KOG4354|consen 92 MALPNQVCKPFVSLTESSDGKSR 114 (340)
T ss_pred eecchhhHHHHHHHHhhcCCcee
Confidence 99999988877766555555543
No 382
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.41 E-value=6.4 Score=41.72 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=48.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-c--eecCccccc-C------HHHhhccCCCcEEEEecChhhHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-T--EHLGLPVFN-T------VAEAKAETKANASAIYVPPPFAA 113 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~--~i~G~p~y~-s------l~dip~~~~vDlavi~vp~~~v~ 113 (340)
.|+|+|. |+.|+.+.+.|.+.|++++ .++.+... + .-.|.++|- | +++..- .+.|+++++++.+..-
T Consensus 402 ~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi-~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 402 QVIIVGF-GRFGQVIGRLLMANKMRIT-VLERDISAVNLMRKYGYKVYYGDATQLELLRAAGA-EKAEAIVITCNEPEDT 478 (601)
T ss_pred CEEEecC-chHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCC-ccCCEEEEEeCCHHHH
Confidence 5778899 9999999999999998855 45544310 1 124555442 2 222221 3689999999886555
Q ss_pred -HHHHHHHHcCC
Q 019500 114 -AAILEAMEAEL 124 (340)
Q Consensus 114 -~~v~ea~~~Gv 124 (340)
.++..+.+...
T Consensus 479 ~~i~~~~r~~~p 490 (601)
T PRK03659 479 MKIVELCQQHFP 490 (601)
T ss_pred HHHHHHHHHHCC
Confidence 44444444443
No 383
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.18 E-value=12 Score=34.27 Aligned_cols=106 Identities=12% Similarity=0.198 Sum_probs=64.9
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHH
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILE 118 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~e 118 (340)
..+-+. ++-+.+..-...+++.|.+.|++.+-... +. -..++.++++.++. +| +++-.-.=...+.+++
T Consensus 7 ~~~lia-Vlr~~~~e~a~~~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~-~~-~~vGAGTVl~~~~a~~ 75 (204)
T TIGR01182 7 EAKIVP-VIRIDDVDDALPLAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEV-PD-ALIGAGTVLNPEQLRQ 75 (204)
T ss_pred hCCEEE-EEecCCHHHHHHHHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHC-CC-CEEEEEeCCCHHHHHH
Confidence 333444 34555444445677888899998552211 11 12345566666542 46 3444455555678999
Q ss_pred HHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500 119 AMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (340)
Q Consensus 119 a~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~ 166 (340)
+++.|.+.+ +|+++.+ ++.+.+ +++|+.++ | |+++|.
T Consensus 76 a~~aGA~Fi--vsP~~~~----~v~~~~-~~~~i~~i-P---G~~Tpt 112 (204)
T TIGR01182 76 AVDAGAQFI--VSPGLTP----ELAKHA-QDHGIPII-P---GVATPS 112 (204)
T ss_pred HHHcCCCEE--ECCCCCH----HHHHHH-HHcCCcEE-C---CCCCHH
Confidence 999999984 5999953 344554 78898776 4 777775
No 384
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=77.95 E-value=2.7 Score=42.54 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=44.3
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cC-cc--cccCHHHhhccCCCcEEEEecChh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LG-LP--VFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G-~p--~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
...+|+|+|+ |.+|+.++++|.+.|...++.+|..... ..+ .+ .. -|.++.+... +.|++|-+|++.
T Consensus 180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~--~aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIK--KADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhc--cCCEEEECcCCC
Confidence 4456888899 9999999999999998767689987521 111 11 11 1233433333 478888888663
No 385
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=77.93 E-value=11 Score=38.76 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=55.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-----CCeEEEeeCCC-CCCc-----------ee-------------------cC-
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-----GTKMVGGVTPK-KGGT-----------EH-------------------LG- 84 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-----G~~vv~~VnP~-~~g~-----------~i-------------------~G- 84 (340)
..+|+|.|. |++|+.++|.+.+. +.++++.+..+ ..++ ++ .|
T Consensus 127 ~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCE
Confidence 557889999 99999999987753 45677553211 1001 11 12
Q ss_pred -cccc--cCHHHhhc-cCCCc--EEEEecChhhHHHHHHHHHH-cCCcEEEEecC
Q 019500 85 -LPVF--NTVAEAKA-ETKAN--ASAIYVPPPFAAAAILEAME-AELDLVVCITE 132 (340)
Q Consensus 85 -~p~y--~sl~dip~-~~~vD--lavi~vp~~~v~~~v~ea~~-~Gvk~vvi~t~ 132 (340)
++++ ++.+++|= +.++| ++|.++..-...+-+..-++ +|+|.+++-++
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP 260 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAP 260 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCC
Confidence 1222 24666662 24678 88888877766666666667 78887654333
No 386
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.77 E-value=11 Score=33.46 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
+|+|.|+||..|..+++.|.+.|++++..+.+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 67888999999999999999999986533443
No 387
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=77.24 E-value=33 Score=30.35 Aligned_cols=45 Identities=7% Similarity=-0.037 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCc--eEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 019500 196 AVFQTTAVGLGQ--STCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILI 242 (340)
Q Consensus 196 ~~~~~~~~giG~--S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly 242 (340)
+.+.+.+.++-+ ...+...... +.....+.+++.+.|+.++|+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 138 YREALEEAGIPLDEELIVEGDFSE--ESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHcCCCCCcceEEecccch--hhHHHHHHHHHhcCCCCcEEEEc
Confidence 444555556433 2233333221 33455566788888888887765
No 388
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=77.16 E-value=11 Score=38.26 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=46.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEE-ee--CCCCCCceecC------cccccCHHHhhccCCCcEEEEecChhhH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVG-GV--TPKKGGTEHLG------LPVFNTVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~-~V--nP~~~g~~i~G------~p~y~sl~dip~~~~vDlavi~vp~~~v 112 (340)
+.+|+|+|. |.-.+.+...+++.|+++++ +. ||.- ..+.. ..-++.+.++..++++|+++...-....
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 458889998 44445667778888887443 44 4432 11211 1122234444444568888876444445
Q ss_pred HHHHHHHHHcCCcE
Q 019500 113 AAAILEAMEAELDL 126 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~ 126 (340)
...+.++.+.|++.
T Consensus 79 ~~~~~~l~~~Gi~v 92 (435)
T PRK06395 79 TPLVNNLLKRGIKV 92 (435)
T ss_pred HHHHHHHHHCCCcE
Confidence 55566666777764
No 389
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=77.13 E-value=22 Score=35.18 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEe-eCCCCCCceecCccc---ccCHHHhhccCCCcEEEEecChhh-HHH
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGG-VTPKKGGTEHLGLPV---FNTVAEAKAETKANASAIYVPPPF-AAA 114 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~-VnP~~~g~~i~G~p~---y~sl~dip~~~~vDlavi~vp~~~-v~~ 114 (340)
+..-+|.|+|+ |++|+.+++.|..+|..+.|- -++.. .+. -... +-+++++.. +-|+++++.|-.. ...
T Consensus 160 ~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~--~~~-~~~~~~~~~d~~~~~~--~sD~ivv~~pLt~~T~~ 233 (336)
T KOG0069|consen 160 LEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLP--PEE-AYEYYAEFVDIEELLA--NSDVIVVNCPLTKETRH 233 (336)
T ss_pred ccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCc--hhh-HHHhcccccCHHHHHh--hCCEEEEecCCCHHHHH
Confidence 44556778899 999999999999999544432 22221 111 1123 448888876 5899999988633 333
Q ss_pred HH--HHHHHcCCcEEEEecCCC-ChhhHHHHHHHHhccC
Q 019500 115 AI--LEAMEAELDLVVCITEGI-PQHDMVRVKAALNNQS 150 (340)
Q Consensus 115 ~v--~ea~~~Gvk~vvi~t~Gf-~e~~~~~l~~~aar~~ 150 (340)
++ +.+.+.+...+++ ..+- +--+.+.+.+++ ++.
T Consensus 234 liNk~~~~~mk~g~vlV-N~aRG~iide~~l~eaL-~sG 270 (336)
T KOG0069|consen 234 LINKKFIEKMKDGAVLV-NTARGAIIDEEALVEAL-KSG 270 (336)
T ss_pred HhhHHHHHhcCCCeEEE-eccccccccHHHHHHHH-hcC
Confidence 32 3334445555443 3322 112334455554 444
No 390
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=77.07 E-value=24 Score=33.16 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=52.2
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC-Cc--eecCcc--cccCHHHhhcc-CCCcEEEEecChhh-HHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GT--EHLGLP--VFNTVAEAKAE-TKANASAIYVPPPF-AAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~-g~--~i~G~p--~y~sl~dip~~-~~vDlavi~vp~~~-v~~ 114 (340)
..+++|+|+ |..+..+++.+...||++. .++|+.. -. ...+.. .+...++.... ..-+.+++.+.... =.+
T Consensus 100 ~~~L~IfGa-G~va~~la~la~~lGf~V~-v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D~~ 177 (246)
T TIGR02964 100 APHVVLFGA-GHVGRALVRALAPLPCRVT-WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHALDLE 177 (246)
T ss_pred CCEEEEECC-cHHHHHHHHHHhcCCCEEE-EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChHHHHH
Confidence 457889999 8888889999988999976 7888751 00 111221 11222333221 12477777777544 345
Q ss_pred HHHHHH-HcCCcEEEEec
Q 019500 115 AILEAM-EAELDLVVCIT 131 (340)
Q Consensus 115 ~v~ea~-~~Gvk~vvi~t 131 (340)
+++.++ ++....+=++-
T Consensus 178 ~L~~aL~~~~~~YIG~lG 195 (246)
T TIGR02964 178 LCHAALRRGDFAYFGLIG 195 (246)
T ss_pred HHHHHHhCCCCcEEEEeC
Confidence 677777 45565544333
No 391
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.67 E-value=7.4 Score=39.01 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=52.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---cCccccc-------CHHHhhccCCCcEEEEecChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---LGLPVFN-------TVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~G~p~y~-------sl~dip~~~~vDlavi~vp~~~v 112 (340)
+|+|+|+ |++|+.+++.|.+.|++++ .++++... +++ .|++++. .+.++.- .+.|.++++++.+..
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDET 78 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChHH
Confidence 5788899 9999999999999998866 66553210 111 3444331 2333311 258999999988666
Q ss_pred HHHH-HHHHHc-CCcEEEEec
Q 019500 113 AAAI-LEAMEA-ELDLVVCIT 131 (340)
Q Consensus 113 ~~~v-~ea~~~-Gvk~vvi~t 131 (340)
-..+ ..+-+. +.+.+++.+
T Consensus 79 n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 79 NMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 5443 344444 666655544
No 392
>PTZ00325 malate dehydrogenase; Provisional
Probab=76.61 E-value=17 Score=35.49 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCC-CCCceec------Ccccc--cC----HHHhhccCCCcEEEE
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPK-KGGTEHL------GLPVF--NT----VAEAKAETKANASAI 105 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~-~~g~~i~------G~p~y--~s----l~dip~~~~vDlavi 105 (340)
++.+|.|+|+.|+.|+.++..+...+ .+++ .+|.. ..++..+ ...++ .+ .+++. +.|++|+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~---gaDvVVi 82 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR---GADLVLI 82 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC---CCCEEEE
Confidence 44578888999999999888877544 3433 44432 2221111 11222 11 34443 4899998
Q ss_pred ecCh--h--------------hHHHHHHHHHHcCCcEEEEecCC
Q 019500 106 YVPP--P--------------FAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 106 ~vp~--~--------------~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
+.-. . .+.++++...+.|++.+++.++.
T Consensus 83 taG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SN 126 (321)
T PTZ00325 83 CAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSN 126 (321)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6532 1 33456667778899987766653
No 393
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=76.60 E-value=11 Score=40.04 Aligned_cols=82 Identities=11% Similarity=-0.046 Sum_probs=51.4
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecC------------
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVP------------ 108 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp------------ 108 (340)
..++|+|.|++|-+|+.+.+.|.+.|+++..... .+ .-...+.+.....++|++|=+.-
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~------~l---~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~ 449 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKG------RL---EDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCES 449 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEeecc------cc---ccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHh
Confidence 4568999999999999999999988888632211 11 11122333333335788774431
Q ss_pred ---------hhhHHHHHHHHHHcCCcEEEEecC
Q 019500 109 ---------PPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 109 ---------~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
...+..+++.|.+.|++.++ +++
T Consensus 450 ~~~~~~~~N~~gt~~l~~a~~~~g~~~v~-~Ss 481 (668)
T PLN02260 450 HKVETIRANVVGTLTLADVCRENGLLMMN-FAT 481 (668)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHcCCeEEE-Ecc
Confidence 11345578888899998654 544
No 394
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=76.46 E-value=14 Score=35.41 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=52.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcC--CeEEEeeCCCCCCc-----ee---------cCcccccCHHHhhccCCCcEEEEec
Q 019500 44 RVICQGITGKNGTFHTEQAIEYG--TKMVGGVTPKKGGT-----EH---------LGLPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G--~~vv~~VnP~~~g~-----~i---------~G~p~y~sl~dip~~~~vDlavi~v 107 (340)
+|+|.|++|..|+.+++.|.+.| ++++ .++...... +. ..+.-..++.++.+ ++|.++-+.
T Consensus 6 ~vLVTGatG~IG~~l~~~L~~~g~~~~V~-~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih~A 82 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKII-IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVHAA 82 (324)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcEEE-EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEECc
Confidence 57788999999999999998875 5655 333211000 00 11122223444444 489888654
Q ss_pred Ch------------------hhHHHHHHHHHHcCCcEEEEecCC
Q 019500 108 PP------------------PFAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 108 p~------------------~~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
.. .....+++.|.+.|++.+|.+++.
T Consensus 83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 21 124456777888898887777764
No 395
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.39 E-value=18 Score=32.02 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=46.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEE-EEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDla-vi~vp~~~v~~~v~ea~~~ 122 (340)
.++|.|+++..|..+++.+.+.|++++ .++.+. .... ..+.++... ..+++ ......+.+.++++++.+.
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~-~~~r~~--~~~~-----~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVA-LIGRGA--APLS-----QTLPGVPAD-ALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEE-EEeCCh--HhHH-----HHHHHHhhc-CceEEEeecCCHHHHHHHHHHHHHH
Confidence 477889999999999999999999865 555433 1100 012222221 22222 2334455666666666554
Q ss_pred --CCcEEEEecCC
Q 019500 123 --ELDLVVCITEG 133 (340)
Q Consensus 123 --Gvk~vvi~t~G 133 (340)
++..++ ...|
T Consensus 80 ~~~~d~vi-~~ag 91 (239)
T PRK12828 80 FGRLDALV-NIAG 91 (239)
T ss_pred hCCcCEEE-ECCc
Confidence 566655 4444
No 396
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=76.36 E-value=20 Score=34.49 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEe
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGG 72 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~ 72 (340)
+|+|.|++|-+|+.+++.|.+.|++++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 47788999999999999999999997743
No 397
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=76.28 E-value=3.6 Score=41.56 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=28.5
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
...+|+|+|+ |.+|..+++.+...|.+.+..+|++.
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 4456888899 99999999999988986454777764
No 398
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=76.02 E-value=8.3 Score=38.43 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
+..+|+|+|+ |..|..++++|...|..-+..+|+.
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3456788899 8899999999999998655577765
No 399
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=75.97 E-value=9.4 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
.-+|+|+|+ |..|+..++..+..|.+++ .++.+
T Consensus 167 G~~V~I~G~-GGlGh~avQ~Aka~ga~Vi-a~~~~ 199 (339)
T COG1064 167 GKWVAVVGA-GGLGHMAVQYAKAMGAEVI-AITRS 199 (339)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCeEE-EEeCC
Confidence 456888899 6889999999998998877 44433
No 400
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.88 E-value=8.4 Score=37.35 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=51.6
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~ 121 (340)
.-+|+|+|-|+.+|+-++.+|.+.|+++. ..|.+. . +++++.. ..|+++.+++.....+. +.++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT--~---------~l~e~~~--~ADIVIsavg~~~~v~~--~~lk 221 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRT--R---------DLPAVCR--RADILVAAVGRPEMVKG--DWIK 221 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCC--C---------CHHHHHh--cCCEEEEecCChhhcch--heec
Confidence 45677789999999999999999999865 565332 1 4677765 48999999988664332 2244
Q ss_pred cCCcEEEEecCCCC
Q 019500 122 AELDLVVCITEGIP 135 (340)
Q Consensus 122 ~Gvk~vvi~t~Gf~ 135 (340)
.|. +++--|+.
T Consensus 222 ~Ga---vVIDvGin 232 (296)
T PRK14188 222 PGA---TVIDVGIN 232 (296)
T ss_pred CCC---EEEEcCCc
Confidence 443 33455654
No 401
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=75.84 E-value=15 Score=35.31 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
+|+|.|++|-+|+.+++.|.+.|.+.+..++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 6889999999999999999998876443444
No 402
>PRK05568 flavodoxin; Provisional
Probab=75.81 E-value=22 Score=29.65 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=38.9
Q ss_pred HhhccCCCcEEEEecChh--------hHHHHHHHHHH--cCCcEEEEecCCCChh-hHHHHHHHHhccCCcEEEcc
Q 019500 93 EAKAETKANASAIYVPPP--------FAAAAILEAME--AELDLVVCITEGIPQH-DMVRVKAALNNQSKTRLVGP 157 (340)
Q Consensus 93 dip~~~~vDlavi~vp~~--------~v~~~v~ea~~--~Gvk~vvi~t~Gf~e~-~~~~l~~~aar~~girviGP 157 (340)
++.+ -|.+++.+|.- .+.+.+++... +|-+.+++.|.|.+.. ....+.+.+ ++.|.+++++
T Consensus 45 ~~~~---~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l-~~~g~~~~~~ 116 (142)
T PRK05568 45 DVKG---ADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERM-EGYGANLVNE 116 (142)
T ss_pred HHHh---CCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHH-HHCCCEEeCC
Confidence 5553 79999998853 24455555432 4666666666677533 345555555 6788999987
No 403
>PRK06182 short chain dehydrogenase; Validated
Probab=75.61 E-value=20 Score=33.02 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=48.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcE-EEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDl-avi~vp~~~v~~~v~ea~~~ 122 (340)
.++|.|+++.+|..+++.+.+.|++++ .+..+. +. +.++.+. .++. ..+...++.+.+.+++..+.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVY-GAARRV--DK---------MEDLASL-GVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999876 444332 11 2222211 2332 33455667777777776655
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++..+| ...|+
T Consensus 72 ~~~id~li-~~ag~ 84 (273)
T PRK06182 72 EGRIDVLV-NNAGY 84 (273)
T ss_pred cCCCCEEE-ECCCc
Confidence 566654 56664
No 404
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=75.59 E-value=4.3 Score=33.05 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=22.7
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEecCCCChhhHH-HHHHHHhccCCcEEEccC
Q 019500 108 PPPFAAAAILEAMEAELDLVVCITEGIPQHDMV-RVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~-~l~~~aar~~girviGPN 158 (340)
+......+++.|.+.++..+|+.. |..+. =+.+.+ ++.|+++.||+
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGP----E~pL~~Gl~D~l-~~~gi~vfGP~ 93 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGP----EAPLVAGLADAL-RAAGIPVFGPS 93 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESS----HHHHHTTHHHHH-HHTT-CEES--
T ss_pred CCCCHHHHHHHHHHcCCCEEEECC----hHHHHHHHHHHH-HHCCCcEECcC
Confidence 455556677777777777766432 22111 123333 56777777775
No 405
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=75.50 E-value=18 Score=34.99 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=37.3
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCC---Ccee-----------cC-cccccCHHHhhccCCCcEEEEec
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTEH-----------LG-LPVFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~---g~~i-----------~G-~p~y~sl~dip~~~~vDlavi~v 107 (340)
+|.|+|+ |.+|..++..+...|. +++ .+|.... |... .+ +....+++++. +.|++|++.
T Consensus 3 KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~---~aDiVIita 77 (305)
T TIGR01763 3 KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTA---NSDIVVITA 77 (305)
T ss_pred EEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhC---CCCEEEEcC
Confidence 6778898 9999999888888765 633 5554321 1100 11 22234666643 478999888
Q ss_pred C
Q 019500 108 P 108 (340)
Q Consensus 108 p 108 (340)
+
T Consensus 78 g 78 (305)
T TIGR01763 78 G 78 (305)
T ss_pred C
Confidence 7
No 406
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.35 E-value=4.3 Score=38.84 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=43.4
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---c----C-cc--cccCHHHhhccCCCcEEEEecCh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----G-LP--VFNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~----G-~p--~y~sl~dip~~~~vDlavi~vp~ 109 (340)
+..+|+|+|+ |..|+.++..|.+.|.+.++.+|+.... +.+ . . .. .+.++.+... +.|++|-+||.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~ 202 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA--AADGLVHATPT 202 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcC
Confidence 3446788899 8899999999999998656688876411 111 0 0 11 1233443333 47999999876
Q ss_pred hh
Q 019500 110 PF 111 (340)
Q Consensus 110 ~~ 111 (340)
..
T Consensus 203 Gm 204 (284)
T PRK12549 203 GM 204 (284)
T ss_pred CC
Confidence 53
No 407
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.31 E-value=1.8 Score=41.87 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=55.2
Q ss_pred CcCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCCc-----ee--cCccc-ccCHHHhhccCCCcEEEEecCh
Q 019500 39 VDKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGGT-----EH--LGLPV-FNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 39 ~p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g~-----~i--~G~p~-y~sl~dip~~~~vDlavi~vp~ 109 (340)
.+...+|.|+|+ |.+|+.+++.+.. .+.+.++..|+..... ++ .+.++ +.+++++.. +.|+++.+||.
T Consensus 122 ~~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~--~aDiVitaT~s 198 (304)
T PRK07340 122 PAPPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPE--AVDLVVTATTS 198 (304)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhh--cCCEEEEccCC
Confidence 345567888899 9999999998865 5777666777754111 11 12232 467887765 58999999988
Q ss_pred hhHHHHHHHHHHcCCcEE
Q 019500 110 PFAAAAILEAMEAELDLV 127 (340)
Q Consensus 110 ~~v~~~v~ea~~~Gvk~v 127 (340)
.. .+++...+.|.+..
T Consensus 199 ~~--Pl~~~~~~~g~hi~ 214 (304)
T PRK07340 199 RT--PVYPEAARAGRLVV 214 (304)
T ss_pred CC--ceeCccCCCCCEEE
Confidence 75 44554456565543
No 408
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=75.04 E-value=94 Score=31.03 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCCCcEEEEecChHHH----HHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEccCCCcHHHH
Q 019500 178 HKPGRIGIVSRSGTLT----YEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDA 253 (340)
Q Consensus 178 ~~~G~valvSQSG~l~----~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~ 253 (340)
...-.|++|.++...+ ..+...+++.|+-+.......... ...++...+.-+......++|+++.. ..++
T Consensus 170 ~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~~-~~~d~~~~l~~l~~~~~a~viil~~~-----~~~~ 243 (452)
T cd06362 170 FNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSSA-TEEEFDNIIRKLLSKPNARVVVLFCR-----EDDI 243 (452)
T ss_pred CCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCCC-CHHHHHHHHHHHhhcCCCeEEEEEcC-----hHHH
Confidence 3446799999987654 344556666777666555554321 14566777777766556899999876 4678
Q ss_pred HHHHHHhC
Q 019500 254 AALIKESG 261 (340)
Q Consensus 254 ~~f~~a~r 261 (340)
..|+++++
T Consensus 244 ~~~~~~a~ 251 (452)
T cd06362 244 RGLLAAAK 251 (452)
T ss_pred HHHHHHHH
Confidence 89998875
No 409
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=74.97 E-value=17 Score=38.70 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVG 71 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~ 71 (340)
.+|+|.|++|-.|+.+++.|.+. +++++.
T Consensus 7 ~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~ 37 (668)
T PLN02260 7 KNILITGAAGFIASHVANRLIRNYPDYKIVV 37 (668)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCCCEEEE
Confidence 46788899999999999999886 677663
No 410
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=74.89 E-value=12 Score=36.91 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=50.9
Q ss_pred cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC--CCCCCceecC----cccccC---HHHhhccCCCcEEE
Q 019500 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGGTEHLG----LPVFNT---VAEAKAETKANASA 104 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn--P~~~g~~i~G----~p~y~s---l~dip~~~~vDlav 104 (340)
|...+.|+..+|+|+|+ |..|..++..+.+.|++++ .++ |+..+..+.. .+ +.+ +.++.+++++|+++
T Consensus 4 ~~~~~~~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~-~~~~~~~~~~~~~ad~~~~~~-~~d~~~l~~~~~~~~id~vi 80 (395)
T PRK09288 4 LGTPLSPSATRVMLLGS-GELGKEVAIEAQRLGVEVI-AVDRYANAPAMQVAHRSHVID-MLDGDALRAVIEREKPDYIV 80 (395)
T ss_pred ccCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCCchHHhhhheEECC-CCCHHHHHHHHHHhCCCEEE
Confidence 55666778878999998 6777778888888899855 444 4332111111 11 223 44444444689777
Q ss_pred EecChhhHHHHHHHHHHcCCc
Q 019500 105 IYVPPPFAAAAILEAMEAELD 125 (340)
Q Consensus 105 i~vp~~~v~~~v~ea~~~Gvk 125 (340)
... .+.....+.++.+.|++
T Consensus 81 ~~~-e~~~~~~~~~l~~~g~~ 100 (395)
T PRK09288 81 PEI-EAIATDALVELEKEGFN 100 (395)
T ss_pred Eee-CcCCHHHHHHHHhcCCe
Confidence 543 22223445566666654
No 411
>PRK12483 threonine dehydratase; Reviewed
Probab=74.78 E-value=18 Score=37.89 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=85.2
Q ss_pred cCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC--cEEEccCCCCcccCC
Q 019500 89 NTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKPG 166 (340)
Q Consensus 89 ~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g--irviGPNc~Gi~~p~ 166 (340)
.-+..+.++....-+|-++...+...+.-.|...|++..|++..+.++.-...+ |.+| +.+.|++.-.-+.-.
T Consensus 74 n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~-----r~~GAeVil~g~~~d~a~~~A 148 (521)
T PRK12483 74 NKMARLPAEQLARGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGV-----RAHGGEVVLHGESFPDALAHA 148 (521)
T ss_pred HHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHH-----HHCCCEEEEECCCHHHHHHHH
Confidence 335444422123346777778888899999999999998888777764432222 4555 445565432221111
Q ss_pred -Cc----ccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCce-EEeecCCCCCCCCCHHHHHHHhhc-CCCccEE
Q 019500 167 -EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIA-DPQTEGI 239 (340)
Q Consensus 167 -~~----~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S-~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~~I 239 (340)
.+ ...+.+++ ..|-.++ .| |+++.++++.... -+. -++++|+-- .++=+..|+.+ .|++|+|
T Consensus 149 ~~la~e~g~~~v~pf-dd~~via--Gq-gTig~EI~eQ~~~---~~D~VvvpvGgGG----liaGia~~~K~~~p~vkVI 217 (521)
T PRK12483 149 LKLAEEEGLTFVPPF-DDPDVIA--GQ-GTVAMEILRQHPG---PLDAIFVPVGGGG----LIAGIAAYVKYVRPEIKVI 217 (521)
T ss_pred HHHHHhcCCeeeCCC-CChHHHH--HH-HHHHHHHHHHhCC---CCCEEEEecCccH----HHHHHHHHHHHhCCCCEEE
Confidence 10 11122211 1122222 34 8899998876532 233 366777642 22333334432 6999999
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 019500 240 ILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (340)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (340)
.+--|.- ..+..+.+.+||+.+
T Consensus 218 GVep~~a-------~~~~~sl~~g~~~~~ 239 (521)
T PRK12483 218 GVEPDDS-------NCLQAALAAGERVVL 239 (521)
T ss_pred EEEeCCC-------chhhHHHhcCCcccC
Confidence 9987751 234344456777644
No 412
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=74.66 E-value=15 Score=35.21 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=44.9
Q ss_pred EEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCC---Ccee--------c----CcccccCHHHhhccCCCcEEEEecC-
Q 019500 46 ICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKG---GTEH--------L----GLPVFNTVAEAKAETKANASAIYVP- 108 (340)
Q Consensus 46 iVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~---g~~i--------~----G~p~y~sl~dip~~~~vDlavi~vp- 108 (340)
.|+|+ |.+|..++..+...|. +++ .+|.+.. +... . -+....+.+++. +.|++|++..
T Consensus 2 ~IIGa-G~vG~~ia~~la~~~l~eV~-L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~---dADiVIit~g~ 76 (300)
T cd01339 2 SIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIA---GSDVVVITAGI 76 (300)
T ss_pred EEECC-CHHHHHHHHHHHhCCCcEEE-EEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhC---CCCEEEEecCC
Confidence 46699 9999988887776665 633 4444321 0000 0 111223456654 4788888662
Q ss_pred ---------------hhhHHHHHHHHHHcCCcEEEEec
Q 019500 109 ---------------PPFAAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 109 ---------------~~~v~~~v~ea~~~Gvk~vvi~t 131 (340)
.+...+++++..+..-+.++++.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~ 114 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 22344566666666666654333
No 413
>PRK05693 short chain dehydrogenase; Provisional
Probab=74.48 E-value=19 Score=33.15 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=49.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~~v~ea~~~ 122 (340)
.++|.|+++.+|+.+++.+.+.|++++ .+..+. +. ++++... .++ +..+....+.+.+.++++.+.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVW-ATARKA--ED---------VEALAAA-GFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999866 454433 11 2222221 233 234556677777888887664
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++..+| ...|+
T Consensus 70 ~~~id~vi-~~ag~ 82 (274)
T PRK05693 70 HGGLDVLI-NNAGY 82 (274)
T ss_pred cCCCCEEE-ECCCC
Confidence 466654 56664
No 414
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=74.41 E-value=15 Score=39.28 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=26.8
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHc-CCeEEEee
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEY-GTKMVGGV 73 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~-G~~vv~~V 73 (340)
..+|+|.|++|-.|+.+++.|.+. |+++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 457899999999999999999985 79887544
No 415
>PRK05086 malate dehydrogenase; Provisional
Probab=74.40 E-value=23 Score=34.35 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=50.3
Q ss_pred EEEEeCCCCCcchHHHHHHHH-cC--CeEE-EeeCCCCCCc--eec--C--ccc----ccCH-HHhhccCCCcEEEEecC
Q 019500 44 RVICQGITGKNGTFHTEQAIE-YG--TKMV-GGVTPKKGGT--EHL--G--LPV----FNTV-AEAKAETKANASAIYVP 108 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~-~G--~~vv-~~VnP~~~g~--~i~--G--~p~----y~sl-~dip~~~~vDlavi~vp 108 (340)
+|+|+|++|+.|+.++..+.. .+ .+++ +..|+...|. ++. + ..+ -.++ +++. +.|++|++.-
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~---~~DiVIitaG 78 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE---GADVVLISAG 78 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC---CCCEEEEcCC
Confidence 677889999999998877744 33 3433 2344443211 111 1 111 1243 3332 4899998764
Q ss_pred h----------------hhHHHHHHHHHHcCCcEEEEecCC
Q 019500 109 P----------------PFAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 109 ~----------------~~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
. ..+.++++...+.+.+.++++.+.
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3 145566777778888887766654
No 416
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.18 E-value=16 Score=37.01 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=55.1
Q ss_pred hHHHHHHHHcCCe-EEEeeCCCCCCceecC----cccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH---cCCcEE
Q 019500 56 TFHTEQAIEYGTK-MVGGVTPKKGGTEHLG----LPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME---AELDLV 127 (340)
Q Consensus 56 ~~v~~~l~~~G~~-vv~~VnP~~~g~~i~G----~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~---~Gvk~v 127 (340)
....+.+.+.+.. .+..=|+.. ....| -.+|++++++.+ +-|.+|+++|+++-.+++++.-. .++|.+
T Consensus 39 q~f~~aL~~~~~~~~v~vqn~~h--~~l~G~~~id~~~~~~~~i~g--~WdtlILavtaDAY~~VL~ql~~~~L~~vk~i 114 (429)
T PF10100_consen 39 QRFFEALARSDGLFEVSVQNEQH--QALSGECTIDHVFQDYEEIEG--EWDTLILAVTADAYLDVLQQLPWEVLKRVKSI 114 (429)
T ss_pred HHHHHHHHhCCCEEEEeecchhh--hhhcCeEEhhHhhcCHHHhcc--cccEEEEEechHHHHHHHHhcCHHHHhhCCEE
Confidence 3444555554433 332345554 33444 257889999987 58999999999999988887653 479999
Q ss_pred EEecCCCChhh
Q 019500 128 VCITEGIPQHD 138 (340)
Q Consensus 128 vi~t~Gf~e~~ 138 (340)
|.+++.|...-
T Consensus 115 VLvSPtfGS~~ 125 (429)
T PF10100_consen 115 VLVSPTFGSHL 125 (429)
T ss_pred EEECcccchHH
Confidence 99999996543
No 417
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=74.18 E-value=11 Score=35.85 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=25.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+|+|+|+ |.+|...++.++..|.+.+..++.+.
T Consensus 147 ~vlV~G~-G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 147 PDLIVGH-GTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred cEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 4777797 88999988888888998555665543
No 418
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.71 E-value=10 Score=40.34 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=47.0
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC--CCCCC-ceecCccccc-C------HHHhhccCCCcEEEEecChhhH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT--PKKGG-TEHLGLPVFN-T------VAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn--P~~~g-~~i~G~p~y~-s------l~dip~~~~vDlavi~vp~~~v 112 (340)
-.|+|+|. |+.|+.+.+.|.+.|++++ .++ |+... -.-.|.++|- + +++.. -.+.|+++++++.+..
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~~vv-vID~d~~~v~~~~~~g~~v~~GDat~~~~L~~ag-i~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 401 PRVIIAGF-GRFGQIVGRLLLSSGVKMT-VLDHDPDHIETLRKFGMKVFYGDATRMDLLESAG-AAKAEVLINAIDDPQT 477 (621)
T ss_pred CcEEEEec-ChHHHHHHHHHHhCCCCEE-EEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcC-CCcCCEEEEEeCCHHH
Confidence 35788899 9999999999999998855 444 43210 0124555542 2 22221 1357888888877443
Q ss_pred -HHHHHHHHHcC
Q 019500 113 -AAAILEAMEAE 123 (340)
Q Consensus 113 -~~~v~ea~~~G 123 (340)
..++..+-+..
T Consensus 478 n~~i~~~ar~~~ 489 (621)
T PRK03562 478 SLQLVELVKEHF 489 (621)
T ss_pred HHHHHHHHHHhC
Confidence 44444444443
No 419
>PRK07411 hypothetical protein; Validated
Probab=73.62 E-value=17 Score=36.49 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.2
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
..+|+|+|+ |..|..++++|...|+.-+..||+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 446788899 88999999999999987555777654
No 420
>PRK09224 threonine dehydratase; Reviewed
Probab=73.44 E-value=55 Score=34.03 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=83.9
Q ss_pred ccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE--EEccCCCCcccC
Q 019500 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP 165 (340)
Q Consensus 88 y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir--viGPNc~Gi~~p 165 (340)
|.-+..+.++....-+|.++...+...+.-.|...|++..+++....+..-.. .+ +.+|.. +.|.+.-.-+.-
T Consensus 56 ~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~----~~-r~~GA~Vi~~g~~~~~a~~~ 130 (504)
T PRK09224 56 YNKMAQLTEEQLARGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVD----AV-RAFGGEVVLHGDSFDEAYAH 130 (504)
T ss_pred HHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEECCCHHHHHHH
Confidence 44455554322345677788888888999999999999988777655433222 22 456644 445431111000
Q ss_pred C-Cc----ccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCce-EEeecCCCCCCCCCHHHHHHHhhc-CCCccE
Q 019500 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIA-DPQTEG 238 (340)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S-~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~~ 238 (340)
. .+ ...+.++. .+..++.--|+++.++++...+ .+. -++++|+- -+++=+..|+.+ .|+||+
T Consensus 131 a~~l~~~~g~~~v~~f----~~~~~i~G~gTi~~EI~~q~~~---~~D~vvvpvGgG----GliaGia~~lk~~~p~~kV 199 (504)
T PRK09224 131 AIELAEEEGLTFIHPF----DDPDVIAGQGTIAMEILQQHPH---PLDAVFVPVGGG----GLIAGVAAYIKQLRPEIKV 199 (504)
T ss_pred HHHHHHhcCCEEeCCC----CCcHHHHhHHHHHHHHHHhccC---CCCEEEEecChh----HHHHHHHHHHHHhCCCCEE
Confidence 0 00 01111111 1112222238888888776532 144 46677764 223333334433 699999
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 019500 239 IILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (340)
Q Consensus 239 I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (340)
|.+--|.. ..+..+.+.++|+..
T Consensus 200 igVe~~~~-------~~~~~s~~~g~~~~~ 222 (504)
T PRK09224 200 IGVEPEDS-------ACLKAALEAGERVDL 222 (504)
T ss_pred EEEEECCC-------hHHHHHHhcCCCccC
Confidence 99887741 233344456677544
No 421
>PRK08264 short chain dehydrogenase; Validated
Probab=73.40 E-value=23 Score=31.66 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=25.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTP 75 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP 75 (340)
.++|.|+++..|+.+++.|.+.|+ +++ .+..
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~-~~~r 39 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVY-AAAR 39 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEE-EEec
Confidence 577889999999999999999998 654 4443
No 422
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=73.29 E-value=10 Score=32.59 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=41.5
Q ss_pred CHHHHHHHhhcCCCccEEEEEEccCCCcHHHHHHHHHHhC-CCCCEEEEEeCCCCC
Q 019500 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESG-TEKPIVAFIAGLTAP 276 (340)
Q Consensus 222 ~~~d~l~~l~~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r-~~KPVvvlk~Grs~~ 276 (340)
+..++.+.|..-...+.|.||+.+.|.....+.+..+.++ ..|||+++-.|....
T Consensus 16 ~~~~~~~~l~~~~~~~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s 71 (160)
T cd07016 16 TAKEFKDALDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAAS 71 (160)
T ss_pred CHHHHHHHHHhccCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHh
Confidence 4455555555544449999999998888888888888876 789999999885443
No 423
>PRK06841 short chain dehydrogenase; Provisional
Probab=72.71 E-value=19 Score=32.65 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=47.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCC-cEEEEecChhhHHHHHHHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKA-NASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~v-Dlavi~vp~~~v~~~v~ea~~ 121 (340)
-.|+|.|+++.+|..+++.|.+.|++++ .++.+. + . . ....++... .+ =+..+...++.+.+.++++.+
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi-~~~r~~--~-~--~---~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVA-LLDRSE--D-V--A---EVAAQLLGG-NAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--H-H--H---HHHHHhhCC-ceEEEEecCCCHHHHHHHHHHHHH
Confidence 3578889999999999999999999866 555433 1 0 0 111122111 11 122334556666667776665
Q ss_pred c--CCcEEEEecCCC
Q 019500 122 A--ELDLVVCITEGI 134 (340)
Q Consensus 122 ~--Gvk~vvi~t~Gf 134 (340)
. ++..+ +...|.
T Consensus 86 ~~~~~d~v-i~~ag~ 99 (255)
T PRK06841 86 AFGRIDIL-VNSAGV 99 (255)
T ss_pred HhCCCCEE-EECCCC
Confidence 4 46664 455554
No 424
>PRK08639 threonine dehydratase; Validated
Probab=72.68 E-value=93 Score=31.39 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCc---EEE--ccCCCCcccCC-Cc----c
Q 019500 100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKT---RLV--GPNCPGVIKPG-EC----K 169 (340)
Q Consensus 100 vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gi---rvi--GPNc~Gi~~p~-~~----~ 169 (340)
-+.++.++...+...+.-.|...|++..|++....++.-...+ |.+|- .++ |.+.-.-+.-. .+ +
T Consensus 73 ~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~-----r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g 147 (420)
T PRK08639 73 AAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQV-----RFFGGEFVEIVLVGDTFDDSAAAAQEYAEETG 147 (420)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHH-----HHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcC
Confidence 4678888888899999999999999998877776654333222 45554 232 32211111000 00 1
Q ss_pred cccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCce-EEeecCCCCCCCCCHHHHHHHhhc-CCCccEEEEEEccCC
Q 019500 170 IGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIA-DPQTEGIILIGEIGG 247 (340)
Q Consensus 170 ~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S-~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~~I~ly~E~~g 247 (340)
..+.+++ ..|-. +-.| |+++.++++...+.+ -+- .++++|+- -+.+=+..|+.+ +|++++|++--|.-
T Consensus 148 ~~~~~~~-~~~~~--~~G~-~tig~EI~eq~~~~~-~~D~vv~~vG~G----G~~aGva~~~k~~~p~~~vigVep~~~- 217 (420)
T PRK08639 148 ATFIPPF-DDPDV--IAGQ-GTVAVEILEQLEKEG-SPDYVFVPVGGG----GLISGVTTYLKERSPKTKIIGVEPAGA- 217 (420)
T ss_pred CcccCCC-CChhH--hcch-hHHHHHHHHhccccC-CCCEEEEecChh----HHHHHHHHHHHHhCCCCEEEEEEECCC-
Confidence 1111111 11111 2234 888999987764322 133 35666664 223334444444 79999999887741
Q ss_pred CcHHHHHHHHHHhCCCCCEE
Q 019500 248 TAEEDAAALIKESGTEKPIV 267 (340)
Q Consensus 248 ~~~~~~~~f~~a~r~~KPVv 267 (340)
..+..+.+.++|+.
T Consensus 218 ------~~~~~s~~~g~~~~ 231 (420)
T PRK08639 218 ------ASMKAALEAGKPVT 231 (420)
T ss_pred ------CcHHHHHhCCCcee
Confidence 23444445566653
No 425
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=72.54 E-value=7.2 Score=38.00 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce----e---cCccc--ccCHHHhhccCCCcEEEEecCh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE----H---LGLPV--FNTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~----i---~G~p~--y~sl~dip~~~~vDlavi~vp~ 109 (340)
...++.|+|+ |.+++.+++.+.. .+++.++..|+.... ++ + .|+++ +.++++... +.|+++-+||.
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~--~aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMS--GADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhc--cCCEEEEecCC
Confidence 3456788899 9999999998874 577766677876421 11 1 24443 677888765 58999999988
Q ss_pred hhHHHHH-HHHHHcCCcE
Q 019500 110 PFAAAAI-LEAMEAELDL 126 (340)
Q Consensus 110 ~~v~~~v-~ea~~~Gvk~ 126 (340)
.. .++ .+.++.|.+.
T Consensus 205 ~~--p~i~~~~l~~g~~i 220 (326)
T TIGR02992 205 ET--PILHAEWLEPGQHV 220 (326)
T ss_pred CC--cEecHHHcCCCcEE
Confidence 54 333 3566667654
No 426
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.35 E-value=24 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPK 76 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~ 76 (340)
.+|+|.|+++..|..+++.+.+.|++++ .++.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVV-IYDSN 38 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 3578899999999999999999999854 56544
No 427
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=72.34 E-value=65 Score=31.03 Aligned_cols=151 Identities=9% Similarity=0.007 Sum_probs=79.3
Q ss_pred CcEEEE---ecChhhHHHHHHHHHHcCCcEEEEecCCCChh-h-HHHHHHHHhccCCcEEEccCCCC--c-ccCCCcc--
Q 019500 100 ANASAI---YVPPPFAAAAILEAMEAELDLVVCITEGIPQH-D-MVRVKAALNNQSKTRLVGPNCPG--V-IKPGECK-- 169 (340)
Q Consensus 100 vDlavi---~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~-~-~~~l~~~aar~~girviGPNc~G--i-~~p~~~~-- 169 (340)
+++++. .-|.+.+..+.+...+.++.. ++.+-.+.+ . ...+...+ ...++.+|+|.+-. + -+..+..
T Consensus 37 ~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~--iig~~~s~~~~~~~~~~~v~-~~~~iP~Is~~~~~~~~~s~~~~~~~~ 113 (362)
T cd06367 37 LEAVAVSNDTDPISLLLSVCDLLVVQVVAG--VVFSDPTDEEAVAQILDFTS-AQTRIPVVGISGRESIFMSDKNIHSLF 113 (362)
T ss_pred eEEEEEecCCCHHHHHHHHHHHhcccceEE--EEecCCCCccchhhhhhhhh-hhhcCcEEEeeccccccccCCCcccce
Confidence 455555 334455444444444433333 333222221 0 22233333 67899999886644 2 2211111
Q ss_pred cccCCCC------------CCCCCcEEEEecChHH----HHHHHHHHHhCCCC--ceEEeecCCCCCCCCCHHHHHHHhh
Q 019500 170 IGIMPGY------------IHKPGRIGIVSRSGTL----TYEAVFQTTAVGLG--QSTCVGIGGDPFNGTNFVDCVTKFI 231 (340)
Q Consensus 170 ~~~~~~~------------~~~~G~valvSQSG~l----~~~~~~~~~~~giG--~S~~vs~Gn~a~~dv~~~d~l~~l~ 231 (340)
+.+.|+. .+.--.|++|..+... ...+...+++.|+- +...+..-... .-++.+++..+.
T Consensus 114 ~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~~~~~~~--~~~~~~~l~~l~ 191 (362)
T cd06367 114 LQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSD--DDGDARLLRQLK 191 (362)
T ss_pred EeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeEEeccCC--CcchHHHHHHHH
Confidence 1112221 1344579999987764 34444556666766 33333222111 126677777666
Q ss_pred cCCCccEEEEEEccCCCcHHHHHHHHHHhC
Q 019500 232 ADPQTEGIILIGEIGGTAEEDAAALIKESG 261 (340)
Q Consensus 232 ~Dp~T~~I~ly~E~~g~~~~~~~~f~~a~r 261 (340)
. .+.++|+++.. ..+++.|+++++
T Consensus 192 ~-~~~~vivl~~~-----~~~~~~il~~a~ 215 (362)
T cd06367 192 K-LESRVILLYCS-----KEEAERIFEAAA 215 (362)
T ss_pred h-cCCcEEEEeCC-----HHHHHHHHHHHH
Confidence 5 56789999977 478899998875
No 428
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=72.34 E-value=6.5 Score=39.71 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+..+|+|+|+ |.+|..+++.|...|+..+..+|+..
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3456788899 99999999999999865444777654
No 429
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=72.34 E-value=27 Score=35.96 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=27.5
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
+..+|+|+|. |+.|...++.|.+.|.++++.-
T Consensus 236 ~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 236 EGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence 4568999999 9999999999999999988543
No 430
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=72.16 E-value=12 Score=35.30 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=53.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc----------eecCcc-cccCHHHhhccCCCcEEEEecChh--
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT----------EHLGLP-VFNTVAEAKAETKANASAIYVPPP-- 110 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~----------~i~G~p-~y~sl~dip~~~~vDlavi~vp~~-- 110 (340)
+|.|.|- ..-|+.+++.|.+.|+ ++..|--.++++ ...|-- -...+.+...++++|++|++++|-
T Consensus 2 ~ILvlgG-TtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~ 79 (249)
T PF02571_consen 2 KILVLGG-TTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAA 79 (249)
T ss_pred EEEEEec-hHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHH
Confidence 4666676 3468899999999987 443433333221 112211 233566666666899999999883
Q ss_pred -hHHHHHHHHHHcCCcEEE
Q 019500 111 -FAAAAILEAMEAELDLVV 128 (340)
Q Consensus 111 -~v~~~v~ea~~~Gvk~vv 128 (340)
....+.+.|.+.|++.+=
T Consensus 80 ~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 80 EISQNAIEACRELGIPYLR 98 (249)
T ss_pred HHHHHHHHHHhhcCcceEE
Confidence 345677788888998754
No 431
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=71.69 E-value=11 Score=32.25 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=43.6
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceec---Cccccc--CH-HHhhccCCCcEEEEec-ChhhHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHL---GLPVFN--TV-AEAKAETKANASAIYV-PPPFAAAAIL 117 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~---G~p~y~--sl-~dip~~~~vDlavi~v-p~~~v~~~v~ 117 (340)
++|+|+ |..+..+++.....||++. .++|+. +.+. .+.+++ ++ +++.- +.+.+|+.+ ..+.=.++++
T Consensus 1 L~I~Ga-G~va~al~~la~~lg~~v~-v~d~r~--e~~~~~~~~~~~~~~~~~~~~~~--~~~t~Vv~th~h~~D~~~L~ 74 (136)
T PF13478_consen 1 LVIFGA-GHVARALARLAALLGFRVT-VVDPRP--ERFPEADEVICIPPDDILEDLEI--DPNTAVVMTHDHELDAEALE 74 (136)
T ss_dssp EEEES--STCHHHHHHHHHHCTEEEE-EEES-C--CC-TTSSEEECSHHHHHHHHC-S---TT-EEE--S-CCCHHHHHH
T ss_pred CEEEeC-cHHHHHHHHHHHhCCCEEE-EEcCCc--cccCCCCccEecChHHHHhccCC--CCCeEEEEcCCchhHHHHHH
Confidence 357799 8899999999999999976 788875 3221 122222 12 12211 223333444 3345556777
Q ss_pred HHHHcCCcEEEEec
Q 019500 118 EAMEAELDLVVCIT 131 (340)
Q Consensus 118 ea~~~Gvk~vvi~t 131 (340)
.++++..+.+=++.
T Consensus 75 ~~l~~~~~YiG~lG 88 (136)
T PF13478_consen 75 AALASPARYIGLLG 88 (136)
T ss_dssp HHTTSS-SEEEESS
T ss_pred HHHcCCCCEEEeec
Confidence 77777777654444
No 432
>PLN02550 threonine dehydratase
Probab=71.60 E-value=26 Score=37.25 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=86.4
Q ss_pred ccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC--cEEEccCCCCcccC
Q 019500 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKP 165 (340)
Q Consensus 88 y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g--irviGPNc~Gi~~p 165 (340)
|.-+..+..+..-.-+|-++...+...+.-.|...|++..|++..+.++.-...+ |.+| +.+.|.+.-.-..-
T Consensus 145 ~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~-----r~~GAeVvl~g~~~dea~~~ 219 (591)
T PLN02550 145 YNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSV-----ERLGATVVLVGDSYDEAQAY 219 (591)
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-----HHcCCEEEEeCCCHHHHHHH
Confidence 3345555322122225556777888888999999999998887777664332222 3454 55666542221110
Q ss_pred C-Cc----ccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCce-EEeecCCCCCCCCCHHHHHHHhhcCCCccEE
Q 019500 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQS-TCVGIGGDPFNGTNFVDCVTKFIADPQTEGI 239 (340)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S-~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I 239 (340)
. .+ ...|.+++ ..|-.++ .| |+++.++++.... .+- -++.+|+-- .-..++-++..+ .|++|+|
T Consensus 220 A~~la~e~g~~fi~pf-ddp~via--Gq-gTig~EI~eQl~~---~~D~VvvpVGgGG-LiaGia~~lK~l--~p~vkVI 289 (591)
T PLN02550 220 AKQRALEEGRTFIPPF-DHPDVIA--GQ-GTVGMEIVRQHQG---PLHAIFVPVGGGG-LIAGIAAYVKRV--RPEVKII 289 (591)
T ss_pred HHHHHHhcCCEEECCC-CChHHHH--HH-HHHHHHHHHHcCC---CCCEEEEEeChhH-HHHHHHHHHHHh--CCCCEEE
Confidence 0 00 01122211 1122222 34 8888888876532 233 466777642 012334444433 7999999
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 019500 240 ILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (340)
Q Consensus 240 ~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (340)
.+--|. +..+..+.+.+||+..
T Consensus 290 GVEp~~-------a~~~~~s~~~G~~v~~ 311 (591)
T PLN02550 290 GVEPSD-------ANAMALSLHHGERVML 311 (591)
T ss_pred EEEECC-------ChHHHHHHhcCCcccc
Confidence 998775 2345455567787654
No 433
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=71.59 E-value=49 Score=31.97 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=23.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCe--EEEeeCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTK--MVGGVTP 75 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~--vv~~VnP 75 (340)
+|.|+|++|..|...+..+...|.. ++ .+++
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~-lvd~ 34 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEIN-LISR 34 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEE-EEEC
Confidence 6778899999999999988887753 44 4554
No 434
>PRK09186 flagellin modification protein A; Provisional
Probab=71.55 E-value=15 Score=33.24 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=45.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcE-EEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANA-SAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDl-avi~vp~~~v~~~v~ea~~~ 122 (340)
.|+|.|+++.+|+.+++.|.+.|++++ .++.+. +... ....++........++. ..+...++.+.++++++.+.
T Consensus 6 ~vlItGas~giG~~~a~~l~~~g~~v~-~~~r~~--~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 6 TILITGAGGLIGSALVKAILEAGGIVI-AADIDK--EALN--ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE-EEecCh--HHHH--HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999866 444332 1111 01111211111112333 33455666677777766543
Q ss_pred --CCcEEEE
Q 019500 123 --ELDLVVC 129 (340)
Q Consensus 123 --Gvk~vvi 129 (340)
++..+|.
T Consensus 81 ~~~id~vi~ 89 (256)
T PRK09186 81 YGKIDGAVN 89 (256)
T ss_pred cCCccEEEE
Confidence 2555443
No 435
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.53 E-value=23 Score=32.04 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
.+++|.|+++..|+.+++.|.+.|++++ .+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~-~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVH-VCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence 4577889999999999999999999865 444
No 436
>PRK08267 short chain dehydrogenase; Provisional
Probab=71.41 E-value=16 Score=33.35 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=48.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCH-HHhhccCCCc-EEEEecChhhHHHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV-AEAKAETKAN-ASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl-~dip~~~~vD-lavi~vp~~~v~~~v~ea~~ 121 (340)
+++|.|+|+.+|..+++.|.+.|++++ .++++. +.. +.+ .++... .++ +.++....+.+.+.++++.+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~-~~~r~~--~~~------~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVG-AYDINE--AGL------AALAAELGAG-NAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCCH--HHH------HHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHH
Confidence 477889999999999999999999866 455433 110 011 111111 122 23445667777777777765
Q ss_pred c---CCcEEEEecCCC
Q 019500 122 A---ELDLVVCITEGI 134 (340)
Q Consensus 122 ~---Gvk~vvi~t~Gf 134 (340)
. .+..++ ...|.
T Consensus 73 ~~~~~id~vi-~~ag~ 87 (260)
T PRK08267 73 ATGGRLDVLF-NNAGI 87 (260)
T ss_pred HcCCCCCEEE-ECCCC
Confidence 3 466654 45554
No 437
>PLN00106 malate dehydrogenase
Probab=71.30 E-value=36 Score=33.35 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=20.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGT 67 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~ 67 (340)
.+|.|+|++|+.|+.++..|...+.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~ 43 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPL 43 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 4788889999999998887776544
No 438
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=71.22 E-value=11 Score=35.59 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=58.4
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee----c--CcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH----L--GLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i----~--G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
.-+++|+|+ |.+|+.++..+.+.|+++. .+|..... +++ . |.....++++... .+.|++|-++|.....+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~-v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~-~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADCNVI-IANRTVSKAEELAERFQRYGEIQAFSMDELPL-HRVDLIINATSAGMSGN 193 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHHhhcCceEEechhhhcc-cCccEEEECCCCCCCCC
Confidence 345778899 8899999999998898644 66654310 111 1 2111223444332 25899999999753221
Q ss_pred -----HHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE
Q 019500 115 -----AILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155 (340)
Q Consensus 115 -----~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi 155 (340)
.-.+.++.+. .++-+...-.++ .+.+.+ ++.|.+++
T Consensus 194 ~~~~~~~~~~l~~~~-~v~D~~y~p~~T---~ll~~A-~~~G~~~v 234 (270)
T TIGR00507 194 IDEPPVPAEKLKEGM-VVYDMVYNPGET---PFLAEA-KSLGTKTI 234 (270)
T ss_pred CCCCCCCHHHcCCCC-EEEEeccCCCCC---HHHHHH-HHCCCeee
Confidence 1123344443 333333333333 244444 67788877
No 439
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.17 E-value=14 Score=35.56 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=44.1
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHH
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
.-.|+|+|.|+-+|+-++.+|.+.|+++. ..+.+. +++++... ..|++|.+++.....+
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----------~~l~~~~~--~ADIVI~avg~~~~v~ 216 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----------RNLAEVAR--KADILVVAIGRGHFVT 216 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHh--hCCEEEEecCccccCC
Confidence 34567779999999999999999999855 344332 16777665 5899999998766533
No 440
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.96 E-value=10 Score=39.08 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc---eecCccccc---CHHHhhccCCCcEEEEec
Q 019500 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT---EHLGLPVFN---TVAEAKAETKANASAIYV 107 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~---~i~G~p~y~---sl~dip~~~~vDlavi~v 107 (340)
|..++..+ +|+|+|. |+.|...++.|.+.|++++ ..+.+.... +-.|+.++. +.+.+. ..|++|...
T Consensus 6 ~~~~~~~~--~v~V~G~-G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~---~~D~VV~Sp 78 (488)
T PRK03369 6 LDPLLPGA--PVLVAGA-GVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQIA---DYALVVTSP 78 (488)
T ss_pred cccccCCC--eEEEEcC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHhh---cCCEEEECC
Confidence 55556444 4677798 8899999998989999865 455332001 113554432 222332 378777654
Q ss_pred ChhhHHHHHHHHHHcCCcE
Q 019500 108 PPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 108 p~~~v~~~v~ea~~~Gvk~ 126 (340)
.-..--+.++.|.++|++.
T Consensus 79 Gi~~~~p~~~~a~~~gi~v 97 (488)
T PRK03369 79 GFRPTAPVLAAAAAAGVPI 97 (488)
T ss_pred CCCCCCHHHHHHHHCCCcE
Confidence 2122224577777777654
No 441
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.85 E-value=6.4 Score=34.93 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+..+++|+|++|.+|+...+.+.+.|++++ .++++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~~ 62 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRDL 62 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCCH
Confidence 345678889999999999999998888755 666553
No 442
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.82 E-value=15 Score=38.80 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=65.4
Q ss_pred cccccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC------------------ceecCcccccCHHHhh
Q 019500 34 APAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG------------------TEHLGLPVFNTVAEAK 95 (340)
Q Consensus 34 l~~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g------------------~~i~G~p~y~sl~dip 95 (340)
+..+|..|. |.|.|+.|..|+.+++.+.+++-+.+..++..+-. ..+..+.=+..+.++.
T Consensus 244 i~~~~~gK~--vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 244 IGAMLTGKT--VLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred HHhHcCCCE--EEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH
Confidence 444455543 67789999999999999998876533244332210 0133455566677777
Q ss_pred ccCCCcEEEEec-----------Chh-------hHHHHHHHHHHcCCcEEEEecCC
Q 019500 96 AETKANASAIYV-----------PPP-------FAAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 96 ~~~~vDlavi~v-----------p~~-------~v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
+.++||++.=+- |-+ .+..+++.|.+.|++.+|.+|+.
T Consensus 322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD 377 (588)
T COG1086 322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD 377 (588)
T ss_pred hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC
Confidence 766799987543 112 23467889999999999999985
No 443
>PLN02477 glutamate dehydrogenase
Probab=70.79 E-value=17 Score=36.86 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=28.6
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
.+..+|+|+|. |+.|+..++.|.+.|.++++..|
T Consensus 204 l~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 204 IAGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEC
Confidence 35577899998 99999999999999999886544
No 444
>PRK05993 short chain dehydrogenase; Provisional
Probab=70.79 E-value=21 Score=33.20 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=48.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEE-EEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS-AIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDla-vi~vp~~~v~~~v~ea~~~ 122 (340)
.|+|.|+++.+|..+++.+.+.|++++ .+..+. +. ++++.+. .++.. .+.+..+.+.++++++.+.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi-~~~r~~--~~---------~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~ 72 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVF-ATCRKE--ED---------VAALEAE-GLEAFQLDYAEPESIAALVAQVLEL 72 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEE-EEECCH--HH---------HHHHHHC-CceEEEccCCCHHHHHHHHHHHHHH
Confidence 477889999999999999999999866 444332 11 2233221 23322 3455677777778777653
Q ss_pred ---CCcEEEEecCCC
Q 019500 123 ---ELDLVVCITEGI 134 (340)
Q Consensus 123 ---Gvk~vvi~t~Gf 134 (340)
.+..++ ...|+
T Consensus 73 ~~g~id~li-~~Ag~ 86 (277)
T PRK05993 73 SGGRLDALF-NNGAY 86 (277)
T ss_pred cCCCccEEE-ECCCc
Confidence 356544 55554
No 445
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.75 E-value=26 Score=32.08 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=60.8
Q ss_pred EEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCc
Q 019500 46 ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELD 125 (340)
Q Consensus 46 iVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk 125 (340)
+|-+.+..-...+++.+.+.|++.+-. .-+. -..+..++++.++. +| +++-.-.=...+.+++|++.|.+
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEi-t~~t-------p~a~~~I~~l~~~~-~~-~~vGAGTVl~~e~a~~ai~aGA~ 78 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEI-TLRT-------PAALDAIRAVAAEV-EE-AIVGAGTILNAKQFEDAAKAGSR 78 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEE-eCCC-------ccHHHHHHHHHHHC-CC-CEEeeEeCcCHHHHHHHHHcCCC
Confidence 344554334456778888999985522 1111 12345566665542 45 44455555556788999999999
Q ss_pred EEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC
Q 019500 126 LVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG 166 (340)
Q Consensus 126 ~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~ 166 (340)
.+ +|+++.++ +.+.+ +++|+.++ | |+++|.
T Consensus 79 Fi--vSP~~~~~----vi~~a-~~~~i~~i-P---G~~Tpt 108 (201)
T PRK06015 79 FI--VSPGTTQE----LLAAA-NDSDVPLL-P---GAATPS 108 (201)
T ss_pred EE--ECCCCCHH----HHHHH-HHcCCCEe-C---CCCCHH
Confidence 74 59998643 44444 68888776 4 455554
No 446
>PRK08291 ectoine utilization protein EutC; Validated
Probab=70.67 E-value=8.2 Score=37.63 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=53.1
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHH-cCCeEEEeeCCCCCC-ce-------ecCcc--cccCHHHhhccCCCcEEEEecC
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTKMVGGVTPKKGG-TE-------HLGLP--VFNTVAEAKAETKANASAIYVP 108 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~vv~~VnP~~~g-~~-------i~G~p--~y~sl~dip~~~~vDlavi~vp 108 (340)
+...++.|+|+ |.+++.++..+.. .+++.+..+|++... +. -.|++ .+.+++++.. +.|+++.++|
T Consensus 130 ~~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~--~aDiVi~aT~ 206 (330)
T PRK08291 130 EDASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVA--GADIIVTTTP 206 (330)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHc--cCCEEEEeeC
Confidence 33456778899 8889998888775 577766677876411 11 12444 4678888776 4899999988
Q ss_pred hhhHHHHHHH-HHHcCCcE
Q 019500 109 PPFAAAAILE-AMEAELDL 126 (340)
Q Consensus 109 ~~~v~~~v~e-a~~~Gvk~ 126 (340)
... .+++. .++.|.+.
T Consensus 207 s~~--p~i~~~~l~~g~~v 223 (330)
T PRK08291 207 SEE--PILKAEWLHPGLHV 223 (330)
T ss_pred CCC--cEecHHHcCCCceE
Confidence 753 33433 35656543
No 447
>PLN02686 cinnamoyl-CoA reductase
Probab=70.51 E-value=24 Score=34.69 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
.+|+|.|++|-+|+.+++.|.+.|++++..+
T Consensus 54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~ 84 (367)
T PLN02686 54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAV 84 (367)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEe
Confidence 3578889999999999999999999976444
No 448
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=70.46 E-value=19 Score=36.66 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=53.5
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCe---EEEeeCCCCC-CceecCccc---ccCHHHhhccCCCcEEEEecChhhHHHH
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTK---MVGGVTPKKG-GTEHLGLPV---FNTVAEAKAETKANASAIYVPPPFAAAA 115 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~---vv~~VnP~~~-g~~i~G~p~---y~sl~dip~~~~vDlavi~vp~~~v~~~ 115 (340)
++|.|+|--|| .+.++..|.+.+.. .++|=||.-. .....++++ +..|.++..+.++|++|+---...+..+
T Consensus 1 mkVLviGsGgR-EHAiA~~la~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~pL~~Gv 79 (428)
T COG0151 1 MKVLVIGSGGR-EHALAWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAPLVAGV 79 (428)
T ss_pred CeEEEEcCCch-HHHHHHHHhcCCceeEEEEeCCCCccchhhhhccCccccCHHHHHHHHHHcCCCEEEECCcHHHhhhh
Confidence 36888897333 45666677766543 3334455331 122344544 5567777766789999988666777788
Q ss_pred HHHHHHcCCcE
Q 019500 116 ILEAMEAELDL 126 (340)
Q Consensus 116 v~ea~~~Gvk~ 126 (340)
++..-+.|++.
T Consensus 80 vD~l~~~Gi~v 90 (428)
T COG0151 80 VDALRAAGIPV 90 (428)
T ss_pred HHHHHHCCCce
Confidence 88888888875
No 449
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.32 E-value=22 Score=34.25 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=51.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCC--CCce---e-cCcccc-------cCHHHhhccCCCcEEEEecCh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK--GGTE---H-LGLPVF-------NTVAEAKAETKANASAIYVPP 109 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~--~g~~---i-~G~p~y-------~sl~dip~~~~vDlavi~vp~ 109 (340)
+|.|+|+ |..|...+..+...|. ..+..+|++. ...+ . ...+.+ .+.+++. +.|+++++.+.
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~---~aDiViita~~ 77 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCK---GADVVVITAGA 77 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhC---CCCEEEEccCC
Confidence 5778899 9999998888888773 3333555443 1111 1 111222 3455543 48999998875
Q ss_pred hh----------------HHHHHHHHHHcCCcEEEEec
Q 019500 110 PF----------------AAAAILEAMEAELDLVVCIT 131 (340)
Q Consensus 110 ~~----------------v~~~v~ea~~~Gvk~vvi~t 131 (340)
.. ..+.+++..+.+-++++++.
T Consensus 78 ~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 78 NQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 31 44566777777766655555
No 450
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.22 E-value=29 Score=33.93 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+|+|+|+ |..|..++++|...|+.-+..+|+..
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 4778899 88999999999999998666888765
No 451
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=70.19 E-value=19 Score=33.02 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=59.6
Q ss_pred ccccCcCCeEEEEeCCCCCcc---hHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecCh--
Q 019500 35 PAVFVDKNTRVICQGITGKNG---TFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPP-- 109 (340)
Q Consensus 35 ~~lf~p~~iaViVvGasgk~G---~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~-- 109 (340)
+.++.. .=+|+|.|+ ||-| +..+-.|...|++.+ .|+|.+. .....|... +=|+++.....
T Consensus 33 ~~i~~~-~gkv~V~G~-GkSG~Igkk~Aa~L~s~G~~a~-fv~p~ea--~hgdlg~i~---------~~DvviaiS~SGe 98 (202)
T COG0794 33 ELILEC-KGKVFVTGV-GKSGLIGKKFAARLASTGTPAF-FVGPAEA--LHGDLGMIT---------PGDVVIAISGSGE 98 (202)
T ss_pred HHHHhc-CCcEEEEcC-ChhHHHHHHHHHHHHccCCceE-EecCchh--ccCCccCCC---------CCCEEEEEeCCCc
Confidence 344443 336788898 7655 445556666798755 8999862 111222221 24888887755
Q ss_pred -hhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccC
Q 019500 110 -PFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 110 -~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPN 158 (340)
+.+..+++.|-+.|++.+- +|+ .++..+. +..++.+.=|.
T Consensus 99 T~el~~~~~~aK~~g~~lia-iT~-~~~SsLa-------k~aDvvl~ip~ 139 (202)
T COG0794 99 TKELLNLAPKAKRLGAKLIA-ITS-NPDSSLA-------KAADVVLVIPV 139 (202)
T ss_pred HHHHHHHHHHHHHcCCcEEE-EeC-CCCChHH-------HhcCeEEEccC
Confidence 5566778888888998754 454 3333222 34555555444
No 452
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=70.04 E-value=27 Score=35.24 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVT 74 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~Vn 74 (340)
.+|.|+|. |..+..+++.+++.|++++ .++
T Consensus 3 k~iLi~g~-g~~a~~i~~aa~~~G~~vv-~~~ 32 (451)
T PRK08591 3 DKILIANR-GEIALRIIRACKELGIKTV-AVH 32 (451)
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEE-EEc
Confidence 36778898 7778888899999999866 453
No 453
>PRK05650 short chain dehydrogenase; Provisional
Probab=70.00 E-value=27 Score=32.14 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV 70 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv 70 (340)
+|+|.|+++.+|..+++.|.+.|++++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~ 28 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLA 28 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEE
Confidence 467889999999999999999999866
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=69.94 E-value=28 Score=33.46 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=79.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE-EeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChh-------hH---
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV-GGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP-------FA--- 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv-~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~-------~v--- 112 (340)
+++|+|- ..--..+++.|.+.|+++. +...-.. .+..|..++++.+++.. +.|+++.-+|+. ..
T Consensus 4 ~~~v~gg-d~r~~~~~~~l~~~G~~v~~~g~~~~~--~~~~g~~~~~~~~~~~~--~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 4 HIAVIGG-DARQLELIRKLVELGAKVSLVGFDQLD--HGFTGATKSSSLEEALS--DVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred EEEEEcC-cHHHHHHHHHHHHCCCEEEEEeccccc--cccCCceeeccHHHHhc--cCCEEEECCccccCCceeeccccc
Confidence 4556685 2223456788999999944 3433111 23558899988888775 489999888762 11
Q ss_pred -----HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc-----ccCC----C-cccccCCCCC
Q 019500 113 -----AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV-----IKPG----E-CKIGIMPGYI 177 (340)
Q Consensus 113 -----~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi-----~~p~----~-~~~~~~~~~~ 177 (340)
.+..-+...+|. ++ +. |+-..... +.+ ++.|+.++ +.+.. .|.- + +...+.....
T Consensus 79 ~~~~~~~~~l~~l~~~~--~v-~~-G~~~~~~~---~~~-~~~gi~~~--~~~~~~~~~~~ns~~~aegav~~a~~~~~~ 148 (296)
T PRK08306 79 EKLVLTEELLELTPEHC--TI-FS-GIANPYLK---ELA-KETNRKLV--ELFERDDVAILNSIPTAEGAIMMAIEHTPI 148 (296)
T ss_pred cCCcchHHHHHhcCCCC--EE-EE-ecCCHHHH---HHH-HHCCCeEE--EEeccchhhhhccHhHHHHHHHHHHHhCCC
Confidence 233444555562 23 33 54333232 233 57888876 33322 2211 0 0001101011
Q ss_pred CCCCcEEEEecChHHHHHHHHHHHhCCC
Q 019500 178 HKPGRIGIVSRSGTLTYEAVFQTTAVGL 205 (340)
Q Consensus 178 ~~~G~valvSQSG~l~~~~~~~~~~~gi 205 (340)
...|.-.+|--.|.++..+...+...|.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga 176 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA 176 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 1234444444468899999888876553
No 455
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.66 E-value=16 Score=37.04 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCc--------eecCccccc--C-HHHhhccCCCcEEEEecCh-hh
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGT--------EHLGLPVFN--T-VAEAKAETKANASAIYVPP-PF 111 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~--------~i~G~p~y~--s-l~dip~~~~vDlavi~vp~-~~ 111 (340)
+|.|+|. |+.|..+++.|.+.|+++. +.|.+.... +-.|+.++. . .+.+. ++|++|+. |. ..
T Consensus 16 ~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~---~~dlVV~S-pgi~~ 89 (458)
T PRK01710 16 KVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKLD---GFDVIFKT-PSMRI 89 (458)
T ss_pred eEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHhc---cCCEEEEC-CCCCC
Confidence 5677798 8889989999999999855 555332101 113665542 1 23342 48988775 42 22
Q ss_pred HHHHHHHHHHcCCcE
Q 019500 112 AAAAILEAMEAELDL 126 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~ 126 (340)
.-+.+..|.+.|++.
T Consensus 90 ~~p~~~~a~~~~i~i 104 (458)
T PRK01710 90 DSPELVKAKEEGAYI 104 (458)
T ss_pred CchHHHHHHHcCCcE
Confidence 235677777888764
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.22 E-value=25 Score=35.22 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=49.0
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEee--CCCCCC---ceecCcccc-c---C---HHHhhccCCCcEEEEecCh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGV--TPKKGG---TEHLGLPVF-N---T---VAEAKAETKANASAIYVPP 109 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~V--nP~~~g---~~i~G~p~y-~---s---l~dip~~~~vDlavi~vp~ 109 (340)
...++|+|. |+.|+.+++.|.+.|++++ .| ||+... ++..+++++ . + +.+..- .+.|.++++++.
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~-vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~-~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVK-LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGI-DEADAFIALTND 307 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCC-ccCCEEEECCCC
Confidence 356888899 9999999999999898855 55 443200 011233322 1 2 222221 258888888876
Q ss_pred hhHH-HHHHHHHHcCCcEEEE
Q 019500 110 PFAA-AAILEAMEAELDLVVC 129 (340)
Q Consensus 110 ~~v~-~~v~ea~~~Gvk~vvi 129 (340)
+..- .+...|-+.+.+.++.
T Consensus 308 ~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 308 DEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred cHHHHHHHHHHHHhCCCeEEE
Confidence 4332 2233345567766543
No 457
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=69.10 E-value=19 Score=33.52 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=40.5
Q ss_pred CcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHH--cCCcEEEEecCCCChhhHHH
Q 019500 84 GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME--AELDLVVCITEGIPQHDMVR 141 (340)
Q Consensus 84 G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~--~Gvk~vvi~t~Gf~e~~~~~ 141 (340)
|+.++.+..++.+ +.|+++++++|..+.+++++... ..-+.+|=++.|++-+++++
T Consensus 30 g~~~~~~~~e~~~--~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~ 87 (245)
T TIGR00112 30 GIVASSDAQEAVK--EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQ 87 (245)
T ss_pred CcEEeCChHHHHh--hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHH
Confidence 4445566777765 48999999999999999888763 22356677778997665543
No 458
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=69.01 E-value=30 Score=35.58 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=50.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEEEe-e--------------CCCCCCceecC-----------------cccc
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGG-V--------------TPKKGGTEHLG-----------------LPVF 88 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~-V--------------nP~~~g~~i~G-----------------~p~y 88 (340)
.+|+|.|+||..|+..++.+.++ .|++++. . +|++ --+.. .+++
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~--v~v~d~~~~~~l~~~l~~~~~~~~vl 135 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKL--VAVRNESLVDELKEALADLDDKPEII 135 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCE--EEEcCHHHHHHHHHhhcCCCCCcEEE
Confidence 35677799999999988877764 5666643 1 2221 00111 1223
Q ss_pred c---CHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcE
Q 019500 89 N---TVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDL 126 (340)
Q Consensus 89 ~---sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~ 126 (340)
. .+.++.+..++|+++.++-...-..-..+|+++|.+.
T Consensus 136 ~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~V 176 (454)
T PLN02696 136 PGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDI 176 (454)
T ss_pred ECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcE
Confidence 2 3445544345899888887765555557888888664
No 459
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=68.86 E-value=20 Score=35.27 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=32.6
Q ss_pred CHHHhhc-cCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecC
Q 019500 90 TVAEAKA-ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132 (340)
Q Consensus 90 sl~dip~-~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~ 132 (340)
++++++= +.++|+++.|+......+.+...++.|++.++ +|+
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~-iSa 122 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVL-ISA 122 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEE-eCC
Confidence 5666652 23699999999999888889999999998865 453
No 460
>PRK05867 short chain dehydrogenase; Provisional
Probab=68.34 E-value=15 Score=33.49 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=47.4
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCC-cEEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKA-NASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~v-Dlavi~vp~~~v~~~v~ea~~~ 122 (340)
.++|.|+++.+|..+++.|.+.|++++ .++.+. +... ...+.+.+... ++ -+..+...++.+.+.++++.+.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r~~--~~~~--~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVA-IAARHL--DALE--KLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE-EEcCCH--HHHH--HHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999866 444332 1111 11111211111 11 1223345666677777776654
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++..+| ...|.
T Consensus 84 ~g~id~lv-~~ag~ 96 (253)
T PRK05867 84 LGGIDIAV-CNAGI 96 (253)
T ss_pred hCCCCEEE-ECCCC
Confidence 466644 55554
No 461
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=68.32 E-value=32 Score=35.60 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMV 70 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv 70 (340)
++|.|+|. |.-.+.++..+.+. +++++
T Consensus 1 mkVLviG~-Ggrehal~~~l~~s~~g~~v~ 29 (486)
T PRK05784 1 MKVLLVGD-GAREHALAEALEKSTKGYKVY 29 (486)
T ss_pred CEEEEECC-chhHHHHHHHHHhCCCCCEEE
Confidence 37888998 44456677777776 78854
No 462
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=68.00 E-value=17 Score=41.29 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=25.2
Q ss_pred eEEEEeCCCCC-c---------chHHHHHHHHcCCeEEEeeCCCC
Q 019500 43 TRVICQGITGK-N---------GTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 43 iaViVvGasgk-~---------G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.+|+|+|..+. . |+.+++.|++.|++++ .+|++.
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-~v~~np 51 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-LVNPNP 51 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-EEeCCc
Confidence 46788898432 2 5678899999999977 677665
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.92 E-value=16 Score=36.73 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCC--Cc---e--ecCccccc--CHHHhhccCCCcEEEEec--ChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG--GT---E--HLGLPVFN--TVAEAKAETKANASAIYV--PPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~--g~---~--i~G~p~y~--sl~dip~~~~vDlavi~v--p~~~v 112 (340)
+|+|+|+ |+.|...++.|.+.|++++ ..+.+.. .. + -.|++++. .-.+++.+ .+|++|... |++
T Consensus 7 ~v~v~G~-g~~G~s~a~~l~~~G~~V~-~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~~~-- 81 (447)
T PRK02472 7 KVLVLGL-AKSGYAAAKLLHKLGANVT-VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVKNPGIPYT-- 81 (447)
T ss_pred EEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEECCCCCCC--
Confidence 4677899 5599999999999999865 4443210 01 1 12555542 23344331 378776644 333
Q ss_pred HHHHHHHHHcCCcE
Q 019500 113 AAAILEAMEAELDL 126 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~ 126 (340)
-..+++|.++|++.
T Consensus 82 ~~~~~~a~~~~i~v 95 (447)
T PRK02472 82 NPMVEKALEKGIPI 95 (447)
T ss_pred CHHHHHHHHCCCcE
Confidence 25678888888765
No 464
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=67.91 E-value=28 Score=33.08 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-----cee------cCcccccCHHHhhccCCCcEEEEecChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----TEH------LGLPVFNTVAEAKAETKANASAIYVPPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-----~~i------~G~p~y~sl~dip~~~~vDlavi~vp~~~v 112 (340)
.|+|+|+ |..|+..++.|.+.|...+..||...-- ..+ -|.|=..-++|-....+|+.=|..+..-..
T Consensus 32 ~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t 110 (263)
T COG1179 32 HVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFIT 110 (263)
T ss_pred cEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhC
Confidence 4677799 8899999999999887644355543210 001 122222222222222345555555555555
Q ss_pred HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCc
Q 019500 113 AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi 162 (340)
++.+++....+...+|-...-+. --..|.+.+ +++++++| .|+|-
T Consensus 111 ~en~~~~~~~~~DyvIDaiD~v~--~Kv~Li~~c-~~~ki~vI--ss~Ga 155 (263)
T COG1179 111 EENLEDLLSKGFDYVIDAIDSVR--AKVALIAYC-RRNKIPVI--SSMGA 155 (263)
T ss_pred HhHHHHHhcCCCCEEEEchhhhH--HHHHHHHHH-HHcCCCEE--eeccc
Confidence 66666666666666442211111 012333444 56667766 45554
No 465
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=67.84 E-value=13 Score=29.70 Aligned_cols=74 Identities=24% Similarity=0.215 Sum_probs=43.0
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCcccc-c------CHHHhhccCCCcEEEEecChhhHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TE--HLGLPVF-N------TVAEAKAETKANASAIYVPPPFAAA 114 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~--i~G~p~y-~------sl~dip~~~~vDlavi~vp~~~v~~ 114 (340)
|+|+|. |++|+.+++.|.+.+.+++ .|+.+... ++ -.|++++ . .+.++.- .+.|.++++++.+..--
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vv-vid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~a~~vv~~~~~d~~n~ 77 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVV-VIDRDPERVEELREEGVEVIYGDATDPEVLERAGI-EKADAVVILTDDDEENL 77 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEE-EEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTG-GCESEEEEESSSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEE-EEECCcHHHHHHHhcccccccccchhhhHHhhcCc-cccCEEEEccCCHHHHH
Confidence 567899 8899999999999666755 55554310 01 1233322 1 2444332 26899999987765543
Q ss_pred HHHHHHH
Q 019500 115 AILEAME 121 (340)
Q Consensus 115 ~v~ea~~ 121 (340)
.+-..++
T Consensus 78 ~~~~~~r 84 (116)
T PF02254_consen 78 LIALLAR 84 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 466
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.81 E-value=36 Score=30.90 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=47.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~~v~ea~~~ 122 (340)
.++|.|+++.+|..+++.|.+.|++++....... + ..+++... ++. +..+.+.++.+.+.++++.+.
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~--~---------~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE--N---------EAKELREK-GVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH--H---------HHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998663322211 1 11222221 122 233456677777777777665
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++..+ +...|+
T Consensus 77 ~~~id~l-i~~ag~ 89 (255)
T PRK06463 77 FGRVDVL-VNNAGI 89 (255)
T ss_pred cCCCCEE-EECCCc
Confidence 46654 455554
No 467
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.76 E-value=31 Score=31.72 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=64.0
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCC--CcEEEEecChhhHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETK--ANASAIYVPPPFAA 113 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~--vDlavi~vp~~~v~ 113 (340)
.|...+-+. ++-+.+..-...+++.|.+.|++.+-...... ..++.++++.++.+ +|+ ++-.-.=...
T Consensus 9 ~l~~~~vi~-vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~--------~a~~~i~~l~~~~~~~p~~-~vGaGTV~~~ 78 (213)
T PRK06552 9 KLKANGVVA-VVRGESKEEALKISLAVIKGGIKAIEVTYTNP--------FASEVIKELVELYKDDPEV-LIGAGTVLDA 78 (213)
T ss_pred HHHHCCEEE-EEECCCHHHHHHHHHHHHHCCCCEEEEECCCc--------cHHHHHHHHHHHcCCCCCe-EEeeeeCCCH
Confidence 333444444 34565444455677888888998552211111 13445666654322 464 4555566667
Q ss_pred HHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCC
Q 019500 114 AAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCP 160 (340)
Q Consensus 114 ~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~ 160 (340)
+.++++.+.|.+.+ +|+++.++ +.+.+ +++|+.++ |.|+
T Consensus 79 ~~~~~a~~aGA~Fi--vsP~~~~~----v~~~~-~~~~i~~i-PG~~ 117 (213)
T PRK06552 79 VTARLAILAGAQFI--VSPSFNRE----TAKIC-NLYQIPYL-PGCM 117 (213)
T ss_pred HHHHHHHHcCCCEE--ECCCCCHH----HHHHH-HHcCCCEE-CCcC
Confidence 78899999999984 49999643 44554 78888887 5443
No 468
>PRK10637 cysG siroheme synthase; Provisional
Probab=67.61 E-value=11 Score=38.48 Aligned_cols=81 Identities=7% Similarity=-0.041 Sum_probs=51.5
Q ss_pred cCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecC------cc----cccCHHHhhccCCCcEEEEec
Q 019500 38 FVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLG------LP----VFNTVAEAKAETKANASAIYV 107 (340)
Q Consensus 38 f~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G------~p----~y~sl~dip~~~~vDlavi~v 107 (340)
+.-+.-+|+|+|. |+.+..=++.|++.|.++. .|.|+-. +++.. +. -| .-+++. +.++++.++
T Consensus 8 ~~l~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~-visp~~~-~~~~~l~~~~~i~~~~~~~-~~~dl~---~~~lv~~at 80 (457)
T PRK10637 8 CQLRDRDCLLVGG-GDVAERKARLLLDAGARLT-VNALAFI-PQFTAWADAGMLTLVEGPF-DESLLD---TCWLAIAAT 80 (457)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCCC-HHHHHHHhCCCEEEEeCCC-ChHHhC---CCEEEEECC
Confidence 3455667889998 7777776778888898754 6777652 23211 11 22 234444 479999999
Q ss_pred ChhhH-HHHHHHHHHcCCc
Q 019500 108 PPPFA-AAAILEAMEAELD 125 (340)
Q Consensus 108 p~~~v-~~~v~ea~~~Gvk 125 (340)
....+ ..+.+.|-++|+-
T Consensus 81 ~d~~~n~~i~~~a~~~~~l 99 (457)
T PRK10637 81 DDDAVNQRVSEAAEARRIF 99 (457)
T ss_pred CCHHHhHHHHHHHHHcCcE
Confidence 77555 4455666666653
No 469
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=67.51 E-value=19 Score=36.47 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCceecC----ccc-ccC---HHHhhccCCCcEEEEecChhh
Q 019500 41 KNTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTEHLG----LPV-FNT---VAEAKAETKANASAIYVPPPF 111 (340)
Q Consensus 41 ~~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~i~G----~p~-y~s---l~dip~~~~vDlavi~vp~~~ 111 (340)
+.++|.|+|..++ -+.++..+.+.++ ..+ .++|...|..-.+ +++ +.+ |.++..++++|+++...-...
T Consensus 3 ~~~kvLviG~g~r-ehal~~~~~~~~~~~~~-~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGR-ESAIAFALRKSNLLSEL-KVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHH-HHHHHHHHHhCCCCCEE-EEECCchHHhccccccccCcCcCCHHHHHHHHHHcCCCEEEECCchHH
Confidence 4578999998443 3566777777764 344 3566543322111 111 123 334444457999996543444
Q ss_pred HHHHHHHHHHcCCcE
Q 019500 112 AAAAILEAMEAELDL 126 (340)
Q Consensus 112 v~~~v~ea~~~Gvk~ 126 (340)
+..+++.+.+.|++.
T Consensus 81 ~~glad~~~~~Gip~ 95 (426)
T PRK13789 81 VAGFADWAAELGIPC 95 (426)
T ss_pred HHHHHHHHHHcCCCc
Confidence 444556666667653
No 470
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=67.29 E-value=37 Score=32.25 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=47.2
Q ss_pred CCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhcCCCccEEE-EEEccC-CCcHHHHHHH
Q 019500 179 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGII-LIGEIG-GTAEEDAAAL 256 (340)
Q Consensus 179 ~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~Dp~T~~I~-ly~E~~-g~~~~~~~~f 256 (340)
.+|.-.++...|.....+...++..|+-+.. +...... .++..++.+.+.++|+++.++ .+.|+. |. ..+.+++
T Consensus 72 ~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~-i~~~~~~--~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~-~~~~~~i 147 (355)
T TIGR03301 72 PRDGKLLVLINGAYGERLAKICEYLGIPHTD-LNFSEYE--PPDLNRIEEALAADPDITHVATVHHETTTGI-LNPLEAI 147 (355)
T ss_pred CCCCeEEEECCCchhhHHHHHHHHcCCceEE-EecCCCC--CCCHHHHHHHHHhCCCceEEEEEecCCcccc-hhHHHHH
Confidence 3455556666776654344455556665444 3443222 577888888888777776664 445542 32 3344455
Q ss_pred HHHhC-CCCCEEE
Q 019500 257 IKESG-TEKPIVA 268 (340)
Q Consensus 257 ~~a~r-~~KPVvv 268 (340)
.+.++ .+.++|+
T Consensus 148 ~~l~~~~~~~liv 160 (355)
T TIGR03301 148 AKVARSHGAVLIV 160 (355)
T ss_pred HHHHHHcCCEEEE
Confidence 55444 3444443
No 471
>PRK06153 hypothetical protein; Provisional
Probab=66.96 E-value=15 Score=37.02 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~ 77 (340)
.+|+|+|+ |..|+.++..|.+.|..-+..||+..
T Consensus 177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCE
Confidence 35667799 88999999999999987555777753
No 472
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=66.77 E-value=30 Score=29.51 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=51.1
Q ss_pred cchHHHH-HHHHcCCeEEEe-eCCCCCCceecCcccccCHHHhhccCCCcEEEEec----ChhhHHHHHHHHHHcCCcEE
Q 019500 54 NGTFHTE-QAIEYGTKMVGG-VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYV----PPPFAAAAILEAMEAELDLV 127 (340)
Q Consensus 54 ~G~~v~~-~l~~~G~~vv~~-VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~v----p~~~v~~~v~ea~~~Gvk~v 127 (340)
.|..+.. .+++.||++++. .+-. ...+.+...++++|++.++. ....+.+.++++.+.+.+.+
T Consensus 18 lG~~iv~~~lr~~G~eVi~LG~~vp-----------~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~ 86 (137)
T PRK02261 18 VGNKILDRALTEAGFEVINLGVMTS-----------QEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDI 86 (137)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCC-----------HHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCC
Confidence 3544444 455679997742 2211 11233333345799998875 33456677777777765433
Q ss_pred EEecCCC---ChhhHHHHHHHHhccCCc-EEEccCC
Q 019500 128 VCITEGI---PQHDMVRVKAALNNQSKT-RLVGPNC 159 (340)
Q Consensus 128 vi~t~Gf---~e~~~~~l~~~aar~~gi-rviGPNc 159 (340)
.|+-.|- ++.+..+..+.+ ++.|+ .+.+|+.
T Consensus 87 ~i~vGG~~~~~~~~~~~~~~~l-~~~G~~~vf~~~~ 121 (137)
T PRK02261 87 LLYVGGNLVVGKHDFEEVEKKF-KEMGFDRVFPPGT 121 (137)
T ss_pred eEEEECCCCCCccChHHHHHHH-HHcCCCEEECcCC
Confidence 3334443 233333333443 67776 4777774
No 473
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=66.67 E-value=64 Score=33.52 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred ccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcE--EEccCCCCcccC
Q 019500 88 FNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTR--LVGPNCPGVIKP 165 (340)
Q Consensus 88 y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~gir--viGPNc~Gi~~p 165 (340)
|.-+..+..+....-+|.++...+...+.-.|...|++..+++..+.++.-.. .. +.+|.. +.|.+.-....-
T Consensus 53 ~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~----~~-r~~GA~Vvl~g~~~d~a~~~ 127 (499)
T TIGR01124 53 YNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVD----AV-RGFGGEVVLHGANFDDAKAK 127 (499)
T ss_pred HHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH----HH-HhCCCEEEEeCcCHHHHHHH
Confidence 44455553322345677788888888999999999999988776666533222 22 456654 455432111110
Q ss_pred C-Cc----ccccCCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceE-EeecCCCCCCCCCHHHHHHHhhc-CCCccE
Q 019500 166 G-EC----KIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQST-CVGIGGDPFNGTNFVDCVTKFIA-DPQTEG 238 (340)
Q Consensus 166 ~-~~----~~~~~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~-~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~~ 238 (340)
. .+ ...+.++. ..|- -+-.| |+++.+++++.. ..+.+ ++++|.- -+.+=+..|+.+ .|++|+
T Consensus 128 a~~la~~~g~~~i~p~-~~~~--~i~G~-gtig~EI~~q~~---~~~D~vvvpvGgG----GliaGia~~lk~~~p~~kV 196 (499)
T TIGR01124 128 AIELSQEKGLTFIHPF-DDPL--VIAGQ-GTLALEILRQVA---NPLDAVFVPVGGG----GLAAGVAALIKQLMPEIKV 196 (499)
T ss_pred HHHHHHhcCCEeeCCC-CChH--HHHhh-HHHHHHHHHhCC---CCCCEEEEccCcc----HHHHHHHHHHHHhCCCCEE
Confidence 0 11 11121111 1111 12234 888888887643 13444 5566654 223333334433 689999
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCCCCEEE
Q 019500 239 IILIGEIGGTAEEDAAALIKESGTEKPIVA 268 (340)
Q Consensus 239 I~ly~E~~g~~~~~~~~f~~a~r~~KPVvv 268 (340)
|.+--|. ...+..+.+.++|+-.
T Consensus 197 IgVep~~-------~~~~~~s~~~g~~~~~ 219 (499)
T TIGR01124 197 IGVEPTD-------SDCMKQALDAGEPVDL 219 (499)
T ss_pred EEEEECC-------ChHHHHHHhcCCceeC
Confidence 9998775 1234444556777653
No 474
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.60 E-value=37 Score=32.94 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=24.7
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~ 77 (340)
..+|.|+|+ |+.|...+-.+...+. .-+..+|.+.
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 458889998 9999988877776665 2333666544
No 475
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=66.55 E-value=37 Score=32.33 Aligned_cols=32 Identities=3% Similarity=0.072 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEEEeeCCCC
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMVGGVTPKK 77 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv~~VnP~~ 77 (340)
.+|+|.|++... .+++.+.+. |++++ .+|++.
T Consensus 2 ~~vLv~g~~~~~--~~~~~l~~~~~g~~vi-~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAGRRV--QLVKALKKSLLKGRVI-GADISE 35 (326)
T ss_pred ceEEEecCCccH--HHHHHHHHhccCCEEE-EECCCC
Confidence 578888995443 677888887 48866 566543
No 476
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=66.45 E-value=1.1e+02 Score=29.54 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=72.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCC--cEEEccCCCCcccCC-Cc--ccc-c
Q 019500 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSK--TRLVGPNCPGVIKPG-EC--KIG-I 172 (340)
Q Consensus 99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~g--irviGPNc~Gi~~p~-~~--~~~-~ 172 (340)
..+-++.++.......+.-.|...|++..++.....++.-.+.+ +.+| +.+++.+.-.-.... .+ ..+ +
T Consensus 66 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~-----~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~ 140 (317)
T TIGR02991 66 RAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEI-----RRLGAEVRIVGRSQDDAQEEVERLVADRGLT 140 (317)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHH-----HHcCCEEEEeCCCHHHHHHHHHHHHHhcCCE
Confidence 34667788888999999999999999998877777664332222 3455 445555322211100 00 001 1
Q ss_pred CCCCCCCCCcEEEEecChHHHHHHHHHHHhCCCCceEEeecCCCCCCCCCHHHHHHHhhc-CCCccEEEEEEcc
Q 019500 173 MPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA-DPQTEGIILIGEI 245 (340)
Q Consensus 173 ~~~~~~~~G~valvSQSG~l~~~~~~~~~~~giG~S~~vs~Gn~a~~dv~~~d~l~~l~~-Dp~T~~I~ly~E~ 245 (340)
+..+...| ..+.--|+++.++.++.. ++ -.-++++|+- -++.=+..+|.+ .|.+++|++--|.
T Consensus 141 ~~~~~~n~---~~~~g~~t~a~Ei~~q~~--~~-d~vvv~~G~G----g~~~Gi~~~~k~~~p~~~vigvep~~ 204 (317)
T TIGR02991 141 MLPPFDHP---DIVAGQGTLGLEVVEQMP--DL-ATVLVPLSGG----GLASGVAMAVKAARPDTRVIGVSMER 204 (317)
T ss_pred eeCCCCCh---HHHhhHHHHHHHHHHhCC--CC-CEEEEEcChh----HHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11100111 112222778888876642 21 1346677764 234444555544 7999999998764
No 477
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.40 E-value=7.8 Score=35.33 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEee
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV 73 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V 73 (340)
+|+|.|+||..|+.+++.|++.|+++.+.+
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~ 31 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAV 31 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEE
Confidence 577889999999999999999999877443
No 478
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.38 E-value=19 Score=36.32 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=44.4
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---cee----cCccccc---CHHHhhccCCCcEEEEecCh-hhHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEH----LGLPVFN---TVAEAKAETKANASAIYVPP-PFAA 113 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i----~G~p~y~---sl~dip~~~~vDlavi~vp~-~~v~ 113 (340)
|+|+|. |+.|..+++.|.+.|+++. +.|.+... ++. .|++++. +.+.+. ++|++|+. |. ..--
T Consensus 9 ~~v~G~-G~sG~s~a~~L~~~G~~v~-~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~d~vV~s-p~i~~~~ 82 (448)
T PRK03803 9 HIVVGL-GKTGLSVVRFLARQGIPFA-VMDSREQPPGLDTLAREFPDVELRCGGFDCELLV---QASEIIIS-PGLALDT 82 (448)
T ss_pred EEEEee-cHhHHHHHHHHHhCCCeEE-EEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhc---CCCEEEEC-CCCCCCC
Confidence 566798 7788888899999999855 55532210 111 2666652 334343 37877653 32 1112
Q ss_pred HHHHHHHHcCCcE
Q 019500 114 AAILEAMEAELDL 126 (340)
Q Consensus 114 ~~v~ea~~~Gvk~ 126 (340)
+.+.+|.++|++.
T Consensus 83 p~~~~a~~~~i~i 95 (448)
T PRK03803 83 PALRAAAAMGIEV 95 (448)
T ss_pred HHHHHHHHCCCcE
Confidence 3566677777654
No 479
>PRK07877 hypothetical protein; Provisional
Probab=66.33 E-value=19 Score=39.27 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=46.9
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCC-eEEEeeCCCCCCce-e---------cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGT-KMVGGVTPKKGGTE-H---------LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~-~vv~~VnP~~~g~~-i---------~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
..+|+|+|+ | .|+.++.+|...|. .-+..||+..-..+ + .|.+--...++-..+.++++-|.+.+..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 335667799 7 89999999998883 43335555431000 0 1211111122222223456666666665
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCC
Q 019500 111 FAAAAILEAMEAELDLVVCITEGI 134 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf 134 (340)
...+.+++.++ ++..++-.+..|
T Consensus 185 i~~~n~~~~l~-~~DlVvD~~D~~ 207 (722)
T PRK07877 185 LTEDNVDAFLD-GLDVVVEECDSL 207 (722)
T ss_pred CCHHHHHHHhc-CCCEEEECCCCH
Confidence 55556655553 466655444444
No 480
>PRK12744 short chain dehydrogenase; Provisional
Probab=66.25 E-value=15 Score=33.42 Aligned_cols=85 Identities=22% Similarity=0.131 Sum_probs=47.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEee-CCCCCCceecCcccccCHHHhhcc-CCCc-EEEEecChhhHHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGV-TPKKGGTEHLGLPVFNTVAEAKAE-TKAN-ASAIYVPPPFAAAAILEAM 120 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~V-nP~~~g~~i~G~p~y~sl~dip~~-~~vD-lavi~vp~~~v~~~v~ea~ 120 (340)
.++|.|+++.+|..+++.|.+.|++++... ++....+... . ..+++... .+++ +..+...++.+.+.++++.
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAE--E---TVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHH--H---HHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 577889999999999999999999855232 2221001110 0 01112110 0122 2334566777777777776
Q ss_pred Hc--CCcEEEEecCCC
Q 019500 121 EA--ELDLVVCITEGI 134 (340)
Q Consensus 121 ~~--Gvk~vvi~t~Gf 134 (340)
+. ++..+ +...|+
T Consensus 85 ~~~~~id~l-i~~ag~ 99 (257)
T PRK12744 85 AAFGRPDIA-INTVGK 99 (257)
T ss_pred HhhCCCCEE-EECCcc
Confidence 54 46654 466665
No 481
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.21 E-value=42 Score=29.75 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEE
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMV 70 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv 70 (340)
+++|.|+|+.+|..+++.+.+.|++++
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~ 33 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVV 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 577889999999999999999999965
No 482
>PRK06756 flavodoxin; Provisional
Probab=66.18 E-value=34 Score=28.84 Aligned_cols=88 Identities=5% Similarity=-0.121 Sum_probs=47.2
Q ss_pred chHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhh---HHHHHHHHHH-------cCC
Q 019500 55 GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF---AAAAILEAME-------AEL 124 (340)
Q Consensus 55 G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~---v~~~v~ea~~-------~Gv 124 (340)
...+.+.+.+.|.++. .+|... .+...++.+ .|.+++.+|... .++.+.+.++ +|.
T Consensus 19 A~~ia~~l~~~g~~v~-~~~~~~----------~~~~~~~~~---~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k 84 (148)
T PRK06756 19 ADHIAGVIRETENEIE-VIDIMD----------SPEASILEQ---YDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGK 84 (148)
T ss_pred HHHHHHHHhhcCCeEE-Eeehhc----------cCCHHHHhc---CCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCC
Confidence 3444555655676533 333322 112345543 799999987742 4443444332 245
Q ss_pred cEEEEecCCCC-----hhhHHHHHHHHhccCCcEEEccC
Q 019500 125 DLVVCITEGIP-----QHDMVRVKAALNNQSKTRLVGPN 158 (340)
Q Consensus 125 k~vvi~t~Gf~-----e~~~~~l~~~aar~~girviGPN 158 (340)
+.+ +|.+|-. ......+.+.+ ++.|.++++|.
T Consensus 85 ~~~-~fgt~~~~y~~~~~a~~~l~~~l-~~~g~~~v~~~ 121 (148)
T PRK06756 85 KAA-VFGSCDSAYPKYGVAVDILIEKL-QERGAAVVLEG 121 (148)
T ss_pred EEE-EEeCCCCchHHHHHHHHHHHHHH-HHCCCEEcCCC
Confidence 554 4555332 12345566665 67889999873
No 483
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.98 E-value=19 Score=35.25 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=20.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcC
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYG 66 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G 66 (340)
..+|.|+|++|..|+.++..|...+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 3567888999999999998887643
No 484
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=65.97 E-value=32 Score=34.78 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCC
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTP 75 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP 75 (340)
+|.|+|. |..+..+++.+++.|++++ .+++
T Consensus 4 kili~g~-g~~~~~~~~aa~~lG~~vv-~~~~ 33 (449)
T TIGR00514 4 KILIANR-GEIALRILRACKELGIKTV-AVHS 33 (449)
T ss_pred eEEEeCC-CHHHHHHHHHHHHcCCeEE-EEEC
Confidence 6777798 6677778888999999976 4543
No 485
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=65.88 E-value=85 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCcch--HHHHHHHHcCCeEEEeeCCCC
Q 019500 42 NTRVICQGITGKNGT--FHTEQAIEYGTKMVGGVTPKK 77 (340)
Q Consensus 42 ~iaViVvGasgk~G~--~v~~~l~~~G~~vv~~VnP~~ 77 (340)
+++|++++. ..+|+ .++|.+.++|++-++.|+|+.
T Consensus 3 ~i~vvL~~~-~~p~NiGaiaR~~~~fG~~~l~lv~p~~ 39 (233)
T TIGR00050 3 NIRIVLVEP-SHSGNIGSIARAMKNMGLTELCLVNPKS 39 (233)
T ss_pred CeEEEEECC-CCCCCHHHHHHHHHhCCCCEEEEeCCCc
Confidence 478888897 33443 367899999998666899975
No 486
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=65.71 E-value=13 Score=35.50 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=44.3
Q ss_pred CeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-cee---c----CcccccCHHHhhcc-CCCcEEEEecChhh
Q 019500 42 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-TEH---L----GLPVFNTVAEAKAE-TKANASAIYVPPPF 111 (340)
Q Consensus 42 ~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-~~i---~----G~p~y~sl~dip~~-~~vDlavi~vp~~~ 111 (340)
..+|+|+|+ |.+++.++..|.+.|++.++.+|..... +++ . .+..+.+.+++.+. ...|++|=+||...
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 346788899 8899999999999999766688876410 111 1 11122333333221 24799999998754
No 487
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=65.70 E-value=16 Score=37.12 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=44.5
Q ss_pred EEEEeCCCCCcchH-HHHHHHHcCCeEEEeeCCCCCC--ce--ecCccccc--CHHHhhccCCCcEEEEec--ChhhHHH
Q 019500 44 RVICQGITGKNGTF-HTEQAIEYGTKMVGGVTPKKGG--TE--HLGLPVFN--TVAEAKAETKANASAIYV--PPPFAAA 114 (340)
Q Consensus 44 aViVvGasgk~G~~-v~~~l~~~G~~vv~~VnP~~~g--~~--i~G~p~y~--sl~dip~~~~vDlavi~v--p~~~v~~ 114 (340)
+|.|+|. |+.|.. +++.|.+.|+++. +.|.+... .+ -.|++++. +.+.+ + .+|++|+.- |++ -+
T Consensus 9 ~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~--~~d~vv~spgi~~~--~~ 81 (461)
T PRK00421 9 RIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAENI-K--DADVVVYSSAIPDD--NP 81 (461)
T ss_pred EEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHHC-C--CCCEEEECCCCCCC--CH
Confidence 4666798 788888 6889999999865 55543210 11 12666542 22223 2 489877643 332 23
Q ss_pred HHHHHHHcCCcE
Q 019500 115 AILEAMEAELDL 126 (340)
Q Consensus 115 ~v~ea~~~Gvk~ 126 (340)
.+++|.++|++.
T Consensus 82 ~~~~a~~~~i~i 93 (461)
T PRK00421 82 ELVAARELGIPV 93 (461)
T ss_pred HHHHHHHCCCcE
Confidence 566666777654
No 488
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=65.61 E-value=35 Score=35.22 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCcchHHHHHHHHc--CCeEE
Q 019500 43 TRVICQGITGKNGTFHTEQAIEY--GTKMV 70 (340)
Q Consensus 43 iaViVvGasgk~G~~v~~~l~~~--G~~vv 70 (340)
++|.|+|+ |.+|-..+-.|.+. |++++
T Consensus 2 m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~ 30 (473)
T PLN02353 2 VKICCIGA-GYVGGPTMAVIALKCPDIEVV 30 (473)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCeEE
Confidence 35777799 88888888888876 57765
No 489
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=65.40 E-value=75 Score=29.65 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=21.9
Q ss_pred EEeCCCCCcchHHHHHHHHcC----CeEEEeeCCCC
Q 019500 46 ICQGITGKNGTFHTEQAIEYG----TKMVGGVTPKK 77 (340)
Q Consensus 46 iVvGasgk~G~~v~~~l~~~G----~~vv~~VnP~~ 77 (340)
+|+|++|.+|..++..+...| .+++ .+|.+.
T Consensus 2 ~IIGagG~vG~~ia~~l~~~~~~~~~el~-L~D~~~ 36 (263)
T cd00650 2 AVIGAGGNVGPALAFGLADGSVLLAIELV-LYDIDE 36 (263)
T ss_pred EEECCCChHHHHHHHHHHhCCCCcceEEE-EEeCCc
Confidence 466998889999888887777 3433 555543
No 490
>PRK06057 short chain dehydrogenase; Provisional
Probab=65.27 E-value=29 Score=31.57 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=46.5
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccC-CCcEEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAET-KANASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~-~vDlavi~vp~~~v~~~v~ea~~~ 122 (340)
+|+|.|+++.+|..+++.+.+.|++++ .++.+. .. +++..++. ..-+..+....+.+...++++.+.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~-~~~r~~--~~---------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVV-VGDIDP--EA---------GKAAADEVGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEE-EEeCCH--HH---------HHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 577889999999999999999999865 443322 11 11111100 011333455666777777776554
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++..++ ..+|+
T Consensus 77 ~~~id~vi-~~ag~ 89 (255)
T PRK06057 77 YGSVDIAF-NNAGI 89 (255)
T ss_pred cCCCCEEE-ECCCc
Confidence 466654 55554
No 491
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.13 E-value=15 Score=36.97 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=45.9
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC---cee----cCcccccCH--HHhhccCCCcEEEEec--ChhhH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG---TEH----LGLPVFNTV--AEAKAETKANASAIYV--PPPFA 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g---~~i----~G~p~y~sl--~dip~~~~vDlavi~v--p~~~v 112 (340)
+|.|+|. |..|...++.|.+.|++++ ..+.+..- .++ .|++++..- ++... +.|++|... |++.
T Consensus 7 ~~~v~G~-g~~G~~~a~~l~~~g~~v~-~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~--~~d~vv~spgi~~~~- 81 (445)
T PRK04308 7 KILVAGL-GGTGISMIAYLRKNGAEVA-AYDAELKPERVAQIGKMFDGLVFYTGRLKDALDN--GFDILALSPGISERQ- 81 (445)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHh--CCCEEEECCCCCCCC-
Confidence 4677798 7889888999999999855 45433210 111 366665321 22222 489988754 3322
Q ss_pred HHHHHHHHHcCCcE
Q 019500 113 AAAILEAMEAELDL 126 (340)
Q Consensus 113 ~~~v~ea~~~Gvk~ 126 (340)
+.++.|.+.|++.
T Consensus 82 -p~~~~a~~~~i~v 94 (445)
T PRK04308 82 -PDIEAFKQNGGRV 94 (445)
T ss_pred -HHHHHHHHcCCcE
Confidence 4566666666654
No 492
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=64.85 E-value=1.3e+02 Score=28.68 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=113.2
Q ss_pred cCCeEEEEeCCCCCcchHHHHHHHH-cCCe-EEE--eeCCCCC----Ccee-cCcccccCHHHhhccCCCcEEEEecChh
Q 019500 40 DKNTRVICQGITGKNGTFHTEQAIE-YGTK-MVG--GVTPKKG----GTEH-LGLPVFNTVAEAKAETKANASAIYVPPP 110 (340)
Q Consensus 40 p~~iaViVvGasgk~G~~v~~~l~~-~G~~-vv~--~VnP~~~----g~~i-~G~p~y~sl~dip~~~~vDlavi~vp~~ 110 (340)
.+.-+|.|.|+-|..|.-.++.|+. +|-+ ++- .+-|... |.-| ..+-=|+++.++.-.+.+|-.+-+.
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfS--- 118 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFS--- 118 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhcccCCchhhhhhccccHHHhhcccccceeeeHH---
Confidence 3455788889878888777776665 5765 331 1444321 1111 2344467888887666788877654
Q ss_pred hHHHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEEccCCCCcccCC-CcccccCCC-CCCCCCcEEEEec
Q 019500 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPG-ECKIGIMPG-YIHKPGRIGIVSR 188 (340)
Q Consensus 111 ~v~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girviGPNc~Gi~~p~-~~~~~~~~~-~~~~~G~valvSQ 188 (340)
..+....+.+++.++- ..-++...+.+.+ +++++++.=|.++|-+-|. .-|-+ |. ..-+|.-|==||.
T Consensus 119 ---ALLSAvGE~NVpLA~~----VNI~GvHNil~vA-a~~kL~iFVPSTIGAFGPtSPRNPT--PdltIQRPRTIYGVSK 188 (366)
T KOG2774|consen 119 ---ALLSAVGETNVPLALQ----VNIRGVHNILQVA-AKHKLKVFVPSTIGAFGPTSPRNPT--PDLTIQRPRTIYGVSK 188 (366)
T ss_pred ---HHHHHhcccCCceeee----ecchhhhHHHHHH-HHcCeeEeecccccccCCCCCCCCC--CCeeeecCceeechhH
Confidence 4566666778776541 1223444555665 7899999999999999876 11111 11 0123444443443
Q ss_pred ChHHHHHHH-HHH-HhCCCCce-----EEeec---CCCCCCCCCHHHHHHHhhc-------CCCccEEEEEEccCCCcHH
Q 019500 189 SGTLTYEAV-FQT-TAVGLGQS-----TCVGI---GGDPFNGTNFVDCVTKFIA-------DPQTEGIILIGEIGGTAEE 251 (340)
Q Consensus 189 SG~l~~~~~-~~~-~~~giG~S-----~~vs~---Gn~a~~dv~~~d~l~~l~~-------Dp~T~~I~ly~E~~g~~~~ 251 (340)
- -.+++ +.. .+.|+-|. ..+|. |+.. +|-..+-|-+.+.. -|+|+.=.+|.|.- .+
T Consensus 189 V---HAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggt-tdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc---~~ 261 (366)
T KOG2774|consen 189 V---HAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGT-TDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDC---MA 261 (366)
T ss_pred H---HHHHHHHHHHhhcCccceecccCcccccCCCCCCc-chhHHHHHHHHHHcCCcccccCCCccCceeehHHH---HH
Confidence 2 22222 222 23455443 34554 3321 25566666665533 59999999999851 34
Q ss_pred HHHHHHHH
Q 019500 252 DAAALIKE 259 (340)
Q Consensus 252 ~~~~f~~a 259 (340)
..-+|+++
T Consensus 262 ~~~~~~~a 269 (366)
T KOG2774|consen 262 SVIQLLAA 269 (366)
T ss_pred HHHHHHhC
Confidence 44556654
No 493
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=64.82 E-value=29 Score=34.62 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=31.0
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCcEEEEecCCCC
Q 019500 99 KANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIP 135 (340)
Q Consensus 99 ~vDlavi~vp~~~v~~~v~ea~~~Gvk~vvi~t~Gf~ 135 (340)
++|++|++.....+..+++++.+.|++.+||.+.+..
T Consensus 234 ~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 234 KVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred CCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 6889988888888888888888888888888777764
No 494
>PRK08628 short chain dehydrogenase; Provisional
Probab=64.78 E-value=20 Score=32.59 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=45.7
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhcc-CCCc-EEEEecChhhHHHHHHHHHH
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE-TKAN-ASAIYVPPPFAAAAILEAME 121 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~-~~vD-lavi~vp~~~v~~~v~ea~~ 121 (340)
.++|.|+++.+|..+++.|.+.|++++ .+..+. ... + ..+++.+. .++. +..+.+.++.....++++.+
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~-~~~r~~--~~~---~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPV-IFGRSA--PDD---E---FAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEE-EEcCCh--hhH---H---HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 467889999999999999999999866 333322 111 1 12232211 0121 12223445556666666655
Q ss_pred c--CCcEEEEecCCC
Q 019500 122 A--ELDLVVCITEGI 134 (340)
Q Consensus 122 ~--Gvk~vvi~t~Gf 134 (340)
. ++..++ ...|.
T Consensus 80 ~~~~id~vi-~~ag~ 93 (258)
T PRK08628 80 KFGRIDGLV-NNAGV 93 (258)
T ss_pred hcCCCCEEE-ECCcc
Confidence 4 466644 55563
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=64.41 E-value=55 Score=31.37 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=79.1
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeE-EEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhH----------
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKM-VGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA---------- 112 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~v-v~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v---------- 112 (340)
+++|+|-. .---.+.+.|.+.|+++ +++++-.. ....|+..+++.++..+ +.|++|+-+|-..-
T Consensus 3 ~~~v~ggd-~r~~~~~~~l~~~g~~v~~~g~~~~~--~~~~~~~~~~~~~~~~~--~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 3 HIAVIGGD-ARQLELIRKLEELDAKISLIGFDQLE--DGFTGAVKCELLELDLT--TLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred EEEEEccc-HHHHHHHHHHHHCCCEEEEEeccccc--cccccceeecchhhhhc--cCCEEEECCccccCCceEeccccc
Confidence 45566852 22344678899999983 33443221 23558888888888555 58999998883211
Q ss_pred ------HHHHHHHHHcCCcEEEEecCCCChhhHHHHHHHHhccCCcEEE----ccCCCCcccCC----Cc-ccccCCCCC
Q 019500 113 ------AAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV----GPNCPGVIKPG----EC-KIGIMPGYI 177 (340)
Q Consensus 113 ------~~~v~ea~~~Gvk~vvi~t~Gf~e~~~~~l~~~aar~~girvi----GPNc~Gi~~p~----~~-~~~~~~~~~ 177 (340)
.+.++.+- + ..++.+|+...+.++ .+ +++|+.++ ..|. -+.|.. +. .........
T Consensus 78 ~~~~l~~~~l~~~~----~-~~~~~~G~~~~~l~~---~a-~~~gi~v~~~~~~~~v-a~~n~~~~Ae~ai~~al~~~~~ 147 (287)
T TIGR02853 78 EKVVLTPELLESTK----G-HCTIYVGISNPYLEQ---LA-ADAGVKLIELFERDDV-AIYNSIPTAEGAIMMAIEHTDF 147 (287)
T ss_pred CCccccHHHHHhcC----C-CCEEEEecCCHHHHH---HH-HHCCCeEEEEEeccce-EEEccHhHHHHHHHHHHHhcCC
Confidence 22222222 2 223456776555543 33 67888877 1222 112221 00 000101011
Q ss_pred CCCCcEEEEecChHHHHHHHHHHHhCCC
Q 019500 178 HKPGRIGIVSRSGTLTYEAVFQTTAVGL 205 (340)
Q Consensus 178 ~~~G~valvSQSG~l~~~~~~~~~~~gi 205 (340)
.-.|.-..|--.|.++..+...+...|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~ 175 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA 175 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 2245544555569999999988876653
No 496
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=64.24 E-value=19 Score=34.97 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=52.5
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCC-----cee-----------------cCcccccCHHHhhccCCCcE
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG-----TEH-----------------LGLPVFNTVAEAKAETKANA 102 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g-----~~i-----------------~G~p~y~sl~dip~~~~vDl 102 (340)
|.|.|+.|..|+.+++.+.+++-+.+..++..+.. .++ ..+.=+..+..+.++++||+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 56789999999999999999876533355543210 011 12222234566666567999
Q ss_pred EEEecChhh------------------HHHHHHHHHHcCCcEEEEecCC
Q 019500 103 SAIYVPPPF------------------AAAAILEAMEAELDLVVCITEG 133 (340)
Q Consensus 103 avi~vp~~~------------------v~~~v~ea~~~Gvk~vvi~t~G 133 (340)
++=+-.=.+ ...+++.|.+.|++.+|.+|+.
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTD 129 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTD 129 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 986542222 2457888999999999988886
No 497
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=64.20 E-value=26 Score=32.03 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=48.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHHHHHHHHHc
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAAAILEAMEA 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~~v~ea~~~ 122 (340)
+++|.|+++.+|+.+++.+.+.|++++ .++.+. +... ...+++.+..++. +..+.+.++.+.+.++++.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~-~~~r~~--~~~~-----~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVV-ISSRNE--ENLE-----KALKELKEYGEVYAVKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEE-EEeCCH--HHHH-----HHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999999999865 455433 1111 1122222110121 223344566677777776654
Q ss_pred --CCcEEEEecCCC
Q 019500 123 --ELDLVVCITEGI 134 (340)
Q Consensus 123 --Gvk~vvi~t~Gf 134 (340)
++.. +|...|+
T Consensus 74 ~g~id~-li~naG~ 86 (259)
T PRK08340 74 LGGIDA-LVWNAGN 86 (259)
T ss_pred cCCCCE-EEECCCC
Confidence 3665 4456664
No 498
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=64.19 E-value=17 Score=33.14 Aligned_cols=91 Identities=18% Similarity=0.093 Sum_probs=49.3
Q ss_pred cccCcCCeEEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCc-EEEEecChhhHHH
Q 019500 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN-ASAIYVPPPFAAA 114 (340)
Q Consensus 36 ~lf~p~~iaViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vD-lavi~vp~~~v~~ 114 (340)
.++.-+.-.++|.|+++.+|..+++.|.+.|++++ .+..+. ++.. ...+.+.+... +++ +......++.+.+
T Consensus 6 ~~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~r~~--~~~~--~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 6 ELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSARKA--EELE--EAAAHLEALGI--DALWIAADVADEADIER 78 (259)
T ss_pred hhhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeCCH--HHHH--HHHHHHHhcCC--eEEEEEccCCCHHHHHH
Confidence 34433334578889999999999999999999865 444322 1111 01111111111 121 2223445566666
Q ss_pred HHHHHHHc--CCcEEEEecCCC
Q 019500 115 AILEAMEA--ELDLVVCITEGI 134 (340)
Q Consensus 115 ~v~ea~~~--Gvk~vvi~t~Gf 134 (340)
.+++..+. ++..++ ...|.
T Consensus 79 ~~~~~~~~~~~id~vi-~~ag~ 99 (259)
T PRK08213 79 LAEETLERFGHVDILV-NNAGA 99 (259)
T ss_pred HHHHHHHHhCCCCEEE-ECCCC
Confidence 66666554 466654 44553
No 499
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=64.19 E-value=36 Score=30.56 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=46.5
Q ss_pred EEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEE---EEecChhhHHHHHHHHHH
Q 019500 45 VICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANAS---AIYVPPPFAAAAILEAME 121 (340)
Q Consensus 45 ViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDla---vi~vp~~~v~~~v~ea~~ 121 (340)
++|.|+++.+|+.+++.|.+.|++++....... .. ... .++++.+. ..++. .+....+.+.+.++++.+
T Consensus 6 ~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~--~~--~~~---~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 6 AYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS--PR--RVK---WLEDQKAL-GFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred EEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh--HH--HHH---HHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998764343222 10 011 12222211 22222 234455666666666655
Q ss_pred c--CCcEEEEecCCC
Q 019500 122 A--ELDLVVCITEGI 134 (340)
Q Consensus 122 ~--Gvk~vvi~t~Gf 134 (340)
. ++..+| ...|.
T Consensus 78 ~~~~id~li-~~ag~ 91 (246)
T PRK12938 78 EVGEIDVLV-NNAGI 91 (246)
T ss_pred HhCCCCEEE-ECCCC
Confidence 4 566644 55665
No 500
>PRK07577 short chain dehydrogenase; Provisional
Probab=64.01 E-value=45 Score=29.59 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=45.0
Q ss_pred EEEEeCCCCCcchHHHHHHHHcCCeEEEeeCCCCCCceecCcccccCHHHhhccCCCcEEEEecChhhHHHHHHHHHHc-
Q 019500 44 RVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA- 122 (340)
Q Consensus 44 aViVvGasgk~G~~v~~~l~~~G~~vv~~VnP~~~g~~i~G~p~y~sl~dip~~~~vDlavi~vp~~~v~~~v~ea~~~- 122 (340)
.++|.|+++..|..+++.+.+.|++++ .+..+. .. . .+. .+ +..+...++.+.+.++++.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~-~~~r~~--~~--~---------~~~--~~-~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVI-GIARSA--ID--D---------FPG--EL-FACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEE-EEeCCc--cc--c---------cCc--eE-EEeeCCCHHHHHHHHHHHHHhC
Confidence 467889999999999999999999866 454433 11 0 011 01 223345566666667666655
Q ss_pred CCcEEEEecCCC
Q 019500 123 ELDLVVCITEGI 134 (340)
Q Consensus 123 Gvk~vvi~t~Gf 134 (340)
++.. ++...|.
T Consensus 68 ~~d~-vi~~ag~ 78 (234)
T PRK07577 68 PVDA-IVNNVGI 78 (234)
T ss_pred CCcE-EEECCCC
Confidence 4555 4455554
Done!