RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019500
(340 letters)
>gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit
alpha.
Length = 300
Score = 542 bits (1397), Expect = 0.0
Identities = 283/308 (91%), Positives = 289/308 (93%), Gaps = 9/308 (2%)
Query: 31 PPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 90
P PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT
Sbjct: 1 ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 60
Query: 91 VAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQS 150
VAEAKAETKANAS IYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALN QS
Sbjct: 61 VAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120
Query: 151 KTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 210
KTRL+GPNCPG+IKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC
Sbjct: 121 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 180
Query: 211 VGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFI 270
VGIGGDPFNGTNFVDC+ KF+ DPQTEGIILIGEIGGTAEEDAAA IKESGTEKP+VAFI
Sbjct: 181 VGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFI 240
Query: 271 AGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAML 330
AGLTAPPGRRMGHAG AIVSGGKGTAQDKIK LREAGVTVVESPAKIG AML
Sbjct: 241 AGLTAPPGRRMGHAG---------AIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAML 291
Query: 331 EVFKQRGL 338
EVFK+RGL
Sbjct: 292 EVFKERGL 299
>gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit;
Provisional.
Length = 317
Score = 533 bits (1375), Expect = 0.0
Identities = 232/318 (72%), Positives = 267/318 (83%), Gaps = 15/318 (4%)
Query: 22 GQSRSFTTAPPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTE 81
++RS T+AP V+V+KNT+VICQGITGK GTFHTEQAIEYGTKMVGGV PKK GT
Sbjct: 13 FRARSSTSAP----RVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTT 68
Query: 82 HL--GLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDM 139
HL GLPVF TV EAK T A+AS IYVPPP AA+AI+EA+EAE+ LVVCITEGIPQHDM
Sbjct: 69 HLKHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDM 128
Query: 140 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQ 199
V+VK AL +Q+KTRL+GPNCPG+IKPGECKIGIMPG+IHK G+IGIVSRSGTLTYEAV Q
Sbjct: 129 VKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIGIVSRSGTLTYEAVAQ 188
Query: 200 TTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKE 259
TTAVGLGQSTCVGIGGDPFNGTNF+DC+ F+ DP+TEGIILIGEIGGTAEE+AA IK
Sbjct: 189 TTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN 248
Query: 260 SGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVV 319
+ +KP+V+FIAG+TAPPGRRMGHAG AI+SGGKGTA KI+ L AGV VV
Sbjct: 249 NPIKKPVVSFIAGITAPPGRRMGHAG---------AIISGGKGTAPGKIEALEAAGVRVV 299
Query: 320 ESPAKIGAAMLEVFKQRG 337
+SPA++G MLEV K++G
Sbjct: 300 KSPAQLGKTMLEVMKKKG 317
>gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha;
Validated.
Length = 291
Score = 503 bits (1299), Expect = 0.0
Identities = 197/301 (65%), Positives = 237/301 (78%), Gaps = 11/301 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ ++K+T+VI QGITGK GTFHTEQ + YGT +VGGVTP KGGT LGLPVFNTVAEA
Sbjct: 2 SILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
T ANAS IYVPPPFAA AILEA++A +DL+VCITEGIP DM+ VKA L + KTRL+
Sbjct: 62 EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLE-RKKTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPG+I PGECKIGIMPG+IHK GR+G+VSRSGTLTYEAV Q T +G GQSTCVGIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP NGTNF+D + F DP+TE I++IGEIGG+AEE+AA IK + T KP+V +IAG+TA
Sbjct: 181 DPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVT-KPVVGYIAGVTA 239
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
PPG+RMGHAG AI+SGGKGTA++K + L AGV V +P++IG + EV K
Sbjct: 240 PPGKRMGHAG---------AIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKG 290
Query: 336 R 336
Sbjct: 291 L 291
>gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy
production and conversion].
Length = 293
Score = 460 bits (1187), Expect = e-165
Identities = 195/302 (64%), Positives = 230/302 (76%), Gaps = 10/302 (3%)
Query: 36 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAK 95
++ ++K+T+VI QGITGK GTFHTEQ + YGTK+VGGVTP KGG LGLPVFNTV EA
Sbjct: 2 SILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAV 61
Query: 96 AETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV 155
ET ANAS I+VPPPFAA AILEA++A + LVV ITEGIP DM+ +K + TRL+
Sbjct: 62 KETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAR-EKGTRLI 120
Query: 156 GPNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
GPNCPG+I PGECKIGIMPG I+KPG IGIVSRSGTLTYEAV Q T GLGQST +GIGG
Sbjct: 121 GPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGG 180
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
DP GT+F+D + F ADP+TE I++IGEIGG AEE+AA IK + T KP+VA+IAG TA
Sbjct: 181 DPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRTA 240
Query: 276 PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
P G+RMGHAG AIVSGGKGTA+ KI L AGV V E+PA++G +LEV K
Sbjct: 241 PEGKRMGHAG---------AIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKG 291
Query: 336 RG 337
R
Sbjct: 292 RQ 293
>gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit.
This model describes succinyl-CoA synthetase alpha
subunits but does not discriminate between GTP-specific
and ATP-specific reactions. The model is designated as
subfamily rather than equivalog for that reason. ATP
citrate lyases appear to form an outgroup [Energy
metabolism, TCA cycle].
Length = 286
Score = 444 bits (1144), Expect = e-158
Identities = 191/296 (64%), Positives = 233/296 (78%), Gaps = 11/296 (3%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DK+T+VI QGITG G+FHTEQ + YGT +VGGVTP KGGT LGLPVF++V EA
Sbjct: 1 ILLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVE 60
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
ET ANAS I+VP PFAA AI EA++A ++L+VCITEGIP HDM++VK + S TRL+G
Sbjct: 61 ETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEE-SGTRLIG 119
Query: 157 PNCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGD 216
PNCPG+I PGECKIGIMPG+IHKPG +GIVSRSGTLTYEAV Q T G GQSTCVGIGGD
Sbjct: 120 PNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGD 179
Query: 217 PFNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
P NGT+F+D + F DP+TE I++IGEIGG+AEE+AA IK++ + KP+V FIAG TAP
Sbjct: 180 PVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMS-KPVVGFIAGATAP 238
Query: 277 PGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
PG+RMGHAG AI+SGGKGTA+ KI+ L AGVTVV+SP+ IG + E+
Sbjct: 239 PGKRMGHAG---------AIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285
>gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 96
Score = 118 bits (297), Expect = 4e-33
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 40 DKNTRVICQGITGKN--GTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAE 97
DK+T+V G G G +H Q + YG KMV GV P+KGGTE G+PV+ +V E + +
Sbjct: 1 DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEED 60
Query: 98 TKANASAIYVPPPFAAAAILEAMEAELDLVVCITEG 133
T + + I VP PFA AI E ++A + +V IT G
Sbjct: 61 TGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96
>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase. This family includes the CoA
ligases Succinyl-CoA synthetase alpha and beta chains,
malate CoA ligase and ATP-citrate lyase. Some members of
the family utilise ATP others use GTP.
Length = 128
Score = 116 bits (294), Expect = 2e-32
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Query: 186 VSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEI 245
+ GTL EA+ G G + +GGD F T +D + ADP+ + I+L +
Sbjct: 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60
Query: 246 G-GTAEEDAAALIKE----SGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGG 300
G G E+ A L+K E P+VA + G A P R A A+ G
Sbjct: 61 GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAK---------ALAESG 111
Query: 301 KGTAQDKIKTLREAGV 316
A + LR AG
Sbjct: 112 VLIASSNNQALRAAGA 127
>gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 100
Score = 112 bits (282), Expect = 6e-31
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 38 FVDKNTRVICQGITGKNGTFHTEQAI---EYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
++ NT V G +G G+F EYGTK VGGV P K G + G+PV+++VAEA
Sbjct: 1 LLNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFVGGVYPGKVGPKVDGVPVYDSVAEA 60
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGI 134
ET + + I+VP A AI EA+EA + +V ITEGI
Sbjct: 61 PEETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase.
Length = 608
Score = 116 bits (291), Expect = 1e-28
Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 23/270 (8%)
Query: 79 GTEHLGLPVFNTVAEA-KAETKANASAIYVPPPFAAAAILEAMEAE-LDLVVCITEGIPQ 136
G E + +PV ++ A KA A+ + AAA+ +EA++ + +V I EG+P+
Sbjct: 57 GQEEIAIPVHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPE 116
Query: 137 HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGYI--------HKPGRIGIVSR 188
D ++ A +K ++GP G I+ G KIG G + ++PG +G VS+
Sbjct: 117 SDTKQLIAYARANNKV-VIGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSK 175
Query: 189 SGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQTEGIILIGEIGGT 248
SG ++ E V G + IGGD F G+ D V +F PQ + I+++GE+GG
Sbjct: 176 SGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGR 235
Query: 249 AEEDAAALIKESGTEKPIVAFIAGLTA---PPGRRMGHAGVDVYTIFGSAIVSGGKGTAQ 305
E +K+ KP+VA+++G A + GHAG A G +AQ
Sbjct: 236 DEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG---------AKSGGDMESAQ 286
Query: 306 DKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
K K L++AG V S + AA+ E F++
Sbjct: 287 AKNKALKDAGAIVPTSFEALEAAIKETFEK 316
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy
production and conversion].
Length = 598
Score = 56.6 bits (137), Expect = 8e-09
Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 34/270 (12%)
Query: 63 IEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEA 122
+EYG + V PK E LG+ + +VA+ + + I VP + E E
Sbjct: 34 LEYGQGKIYPVNPKYD--EVLGVKAYTSVADLPDA--PDLAVIVVPAKVVPEIVHELGEK 89
Query: 123 ELDLVVCITEGIPQ-----HDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIM---- 173
+ + I+ G + ++ + + R++GPNC G+I P IG+
Sbjct: 90 GVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINP---IIGLNATFD 146
Query: 174 PGYIH-KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIA 232
P + + G VS+SG +++ + G+G S V +G D +
Sbjct: 147 PVFGLGRGGGGAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAADRD--ESDLLEYLAD 204
Query: 233 DPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM-GHAGVDVYTI 291
DP+T+ I L E + A KPI+A AG + + H G ++
Sbjct: 205 DPRTKAIGLYIEGVKDGRKFLNAARAAERK-KPIIALKAGRSEAGAKAAASHTG----SL 259
Query: 292 FGSAIVSGGKGTAQDKIKTLREAGVTVVES 321
GS ++AGV VES
Sbjct: 260 AGSDEAYDA---------AFKQAGVIRVES 280
>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP
forming), alpha domain. Although technically
reversible, it is believed that this group of
ADP-dependent acetyl-CoA synthetases (ACS) act in the
direction of acetate and ATP production in the organisms
in which it has been characterized. In most species this
protein exists as a fused alpha-beta domain polypeptide.
In Pyrococcus and related species, however the domains
exist as separate polypeptides. This model represents
the alpha (N-terminal) domain. In Pyrococcus and related
species there appears to have been the development of a
paralogous family such that four other proteins are
close relatives. In reference , one of these (along with
its beta-domain partner) was characterized as ACS-II
showing specificity for phenylacetyl-CoA. This model has
been constructed to exclude these non-ACS-I paralogs.
This may result in new, authentic ACS-I sequences
falling below the trusted cutoff.
Length = 447
Score = 54.2 bits (131), Expect = 3e-08
Identities = 56/218 (25%), Positives = 86/218 (39%), Gaps = 13/218 (5%)
Query: 63 IEYGTK-MVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAME 121
IE G K + V PK G E LG+ + +V E + + I VP + + E E
Sbjct: 31 IEGGYKGKIYPVNPKAG--EILGVKAYPSVLEIPDPV--DLAVIVVPAKYVPQVVEECGE 86
Query: 122 AELDLVVCITEG-----IPQHDMVRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPGY 176
+ V IT G ++ + + + RL+GPNC G+I
Sbjct: 87 KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPT 146
Query: 177 IHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQT 236
+ K G I +S+SG L + G+G S V +G + D + DP T
Sbjct: 147 MPKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKA--DIDESDLLEYLADDPDT 204
Query: 237 EGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLT 274
+ I+L E G +E +KPIV +G +
Sbjct: 205 KVILLYLE-GIKDGRKFLKTAREISKKKPIVVLKSGTS 241
>gnl|CDD|205785 pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like flavodoxin
domain. This domain contains the catalytic domain from
Succinyl-CoA ligase alpha subunit and other related
enzymes. A conserved histidine is involved in phosphoryl
transfer.
Length = 138
Score = 50.1 bits (121), Expect = 1e-07
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 35/153 (22%)
Query: 180 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG--TNFVDCVTKFIADPQTE 237
PG + +VS+SG L + G+G S V +G N +F D + DP+T
Sbjct: 1 PGGVALVSQSGALGAALLDWAARRGIGFSHFVSLG----NEADVDFADLLDYLADDPETR 56
Query: 238 GIIL-IGEIGGTAEEDAAALI---KESGTEKPIVAFIAGLTAPPGRRMG--HAG--VDVY 289
I+L + I D + + + +KP+V +G + G R H G
Sbjct: 57 VILLYLEGIR-----DGRRFLRAARRAARKKPVVVLKSGRS-EAGARAAASHTGALAGSD 110
Query: 290 TIFGSAIVSGGKGTAQDKIKTLREAGVTVVESP 322
++ +A R+AGV V+
Sbjct: 111 AVYDAA---------------FRQAGVIRVDDL 128
>gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated.
Length = 555
Score = 41.2 bits (97), Expect = 7e-04
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 21/192 (10%)
Query: 100 ANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLV-GPN 158
AN + I V +AA +A++ L+ V+ ++ + D +R+K + K LV GP+
Sbjct: 118 ANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTLEDEIRLKT--RAREKGLLVMGPD 174
Query: 159 CPGVIKPGECKIGIMP---GYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGG 215
C G I P + G IG++ SGT E Q G G + +G+GG
Sbjct: 175 C------GTAMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGG 228
Query: 216 DPFN----GTNFVDCVTKFIADPQTEGIILIGEIGGTA-EEDAAALIKESGTEKPIVAFI 270
+ G + + + AD ++E I + + A +K +G KP+VA
Sbjct: 229 RDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKATG--KPVVALF 286
Query: 271 AGLTAPPGRRMG 282
G T P R
Sbjct: 287 LGYT-PAVARDE 297
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 38.7 bits (91), Expect = 0.002
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 231 IADPQTEGIILI-----GEIGGTAEEDAAALIKESGTEKPIVAFIAGLTA 275
+ADP I+L GE+ G E A I+ + KPIVAF+ GL A
Sbjct: 38 LADPDVRAIVLDIDSPGGEVAGVFE--LADAIRAARAGKPIVAFVNGLAA 85
>gnl|CDD|236451 PRK09284, PRK09284, thiamine biosynthesis protein ThiC;
Provisional.
Length = 607
Score = 33.3 bits (77), Expect = 0.21
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 65 YGTKMVGGVTPKKGGTEHLGLP 86
+GT M+ VTPK EHLGLP
Sbjct: 470 FGTAMLCYVTPK----EHLGLP 487
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase
subunit beta/beta'; Reviewed.
Length = 2890
Score = 33.0 bits (75), Expect = 0.29
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 282 GHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 325
D+ G I+ GK KIK L+E + VE P I
Sbjct: 250 QRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDI 293
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 31.8 bits (73), Expect = 0.42
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 248 TAEEDAAALIKESGTEK---PIVAFIAGLTAPPGRRMGHAGVDV 288
T++E AAL E+GT P AF T PP R++ AGV V
Sbjct: 239 TSDEGIAAL-AEAGTVAVLLPGTAFSLRETYPPARKLIDAGVPV 281
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 32.0 bits (73), Expect = 0.47
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 247 GTAEEDAAALIKESGTEK---PIVAFIAGLTAPPGRRMGHAGVDV 288
++ AL E+GT P F T PP R++ GV V
Sbjct: 242 HASDAGIKAL-AEAGTVAVLLPGTTFYLRETYPPARQLIDYGVPV 285
>gnl|CDD|222088 pfam13380, CoA_binding_2, CoA binding domain. This domain has a
Rossmann fold and is found in a number of proteins
including succinyl CoA synthetases, malate and
ATP-citrate ligases.
Length = 115
Score = 29.0 bits (66), Expect = 1.5
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 73 VTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITE 132
V PK E LG P + ++A+ + ++ PP + EA+ V
Sbjct: 33 VNPKGE--EILGEPAYASLADIPEP--VDLVDVFRPPEAVPEIVEEALALGAKAVWLQPG 88
Query: 133 GIPQHDMVRVKAALNNQSKTRLVGPNCPGVI 163
+++ A R+VGPNC GV
Sbjct: 89 V--ENEEAAALARAAG---IRVVGPNCLGVE 114
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 246 GGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIF 292
GGT A L+KE+G + VA + R + G VY++F
Sbjct: 84 GGTLLA-AIELLKEAGAKVVGVAVLLDKPEGGARELASPGDPVYSLF 129
>gnl|CDD|149039 pfam07755, DUF1611, Protein of unknown function (DUF1611). This
region is found in a number of hypothetical bacterial
and archaeal proteins. The region is approximately 350
residues long. A member of this family is thought to
associate with another subunit to form an
H+-transporting ATPase, but no evidence has been found
to support this.
Length = 302
Score = 29.8 bits (68), Expect = 1.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 82 HLGLPVFNTVAEAKAETKANASAIYVP--------PPFAAAAILEAMEAELDLV 127
G+P+ +++ EA A A A + + P +LEA+EA LD+V
Sbjct: 17 GRGIPIVSSLEEALA---AGADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVV 67
>gnl|CDD|129294 TIGR00190, thiC, thiamine biosynthesis protein ThiC. The thiC
ortholog is designated thiA in Bacillus subtilis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 423
Score = 29.3 bits (66), Expect = 2.7
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 65 YGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAI 105
G + VTPK EHL LP V E K A A
Sbjct: 317 AGADFLCYVTPK----EHLALPNVEDVKEGVIAYKIAAHAA 353
>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf,
the mostly archaeal uridine monophosphate kinase
(uridylate kinase) enzymes that catalyze UMP
phosphorylation and play a key role in pyrimidine
nucleotide biosynthesis; regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinase of
Pyrococcus furiosus (Pf) is known to function as a
homohexamer, with GTP and UTP being allosteric
effectors. Like other related enzymes (carbamate kinase,
aspartokinase, and N-acetylglutamate kinase) the E. coli
and most bacterial UMPKs have a conserved, N-terminal,
lysine residue proposed to function in the catalysis of
the phosphoryl group transfer, whereas most archaeal
UMPKs (this CD) appear to lack this residue and the
Pyrococcus furiosus structure has an additional Mg ion
bound to the ATP molecule which is proposed to function
as the catalysis instead. Members of this CD belong to
the Amino Acid Kinase Superfamily (AAK).
Length = 221
Score = 28.8 bits (65), Expect = 3.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 295 AIVSGGKGTAQDKIKTLREAGVTVVE 320
A+V GG A++ I R+ G +
Sbjct: 37 AVVVGGGRLAREYISVARKLGASEAF 62
>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
related but duplicated, double-length protein SppA
(protease IV) of E. coli was shown experimentally to
degrade signal peptides as are released by protein
processing and secretion. This protein shows stronger
homology to the C-terminal region of SppA than to the
N-terminal domain or to the related putative protease
SuhB. The member of this family from Bacillus subtilis
was shown to have properties consistent with a role in
degrading signal peptides after cleavage from precursor
proteins, although it was not demonstrated conclusively
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 208
Score = 28.9 bits (65), Expect = 3.2
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 216 DPFNGTNFVDCVTKFIADPQTEGIIL-IGEIGGT--AEEDAAALIKESGTEKPIVAFIAG 272
+ +F+ + + D + ++L I GGT A E+ +++ +KP+VA + G
Sbjct: 12 ADVSPEDFLKKLERIKDDKTIKALVLRINSPGGTVVASEEIYKKLEKLKAKKPVVASMGG 71
Query: 273 LTAPPGRRMGHAGVDVY----TIFGS 294
+ A G + A +++ TI GS
Sbjct: 72 MAASGGYYISMAADEIFANPGTITGS 97
>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51. This eukaryotic
sequence family consists of RAD51, a protein involved in
DNA homologous recombination and repair. It is similar
in sequence the exclusively meiotic recombinase DMC1
(TIGR02238), to archaeal families RadA (TIGR02236) and
RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Length = 316
Score = 28.9 bits (65), Expect = 3.3
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 53 KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFA 112
+ HT +++ Y PKK E G+ +EAKA+ +A VP F
Sbjct: 18 QEAGLHTVESVAY--------APKKQLLEIKGI------SEAKADKILAEAAKLVPMGFT 63
Query: 113 AAAILEAMEAELDLVVCITEGIPQHD 138
A E V+ +T G + D
Sbjct: 64 TATEFHQRRQE---VIQLTTGSKELD 86
>gnl|CDD|233845 TIGR02395, rpoN_sigma, RNA polymerase sigma-54 factor. A sigma
factor is a DNA-binding protein protein that binds to
the DNA-directed RNA polymerase core to produce the
holoenzyme capable of initiating transcription at
specific sites. Different sigma factors act in
vegetative growth, heat shock, extracytoplasmic
functions (ECF), etc. This model represents the clade of
sigma factors called sigma-54, or RpoN (unrelated to
sigma 70-type factors such as RpoD/SigA). RpoN is
responsible for enhancer-dependent transcription, and
its presence characteristically is associated with
varied panels of activators, most of which are
enhancer-binding proteins (but see Brahmachary, et al.,
PMID:15231786). RpoN may be responsible for
transcription of nitrogen fixation genes, flagellins,
pilins, etc., and synonyms for the gene symbol rpoN,
such as ntrA, reflect these observations [Transcription,
Transcription factors].
Length = 429
Score = 29.2 bits (66), Expect = 3.7
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 231 IADPQTEGIILIGEIGGTAEEDAAALIKESGTEKP----IVAFIAGLTAPPGRRMGHAGV 286
I D + IL+ + AE+D L K+ G + + I L+ PG+
Sbjct: 163 IDDTELAYNILLEHLELLAEKDFRRLAKKLGLSEEELKEALDLIKSLSPKPGKEFADPEE 222
Query: 287 DVYTI 291
Y I
Sbjct: 223 VEYVI 227
>gnl|CDD|226721 COG4271, COG4271, Predicted nucleotide-binding protein containing
TIR -like domain [Transcription].
Length = 233
Score = 28.3 bits (63), Expect = 5.1
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 81 EHLGLPVFNTVAEA--KAETKANASAIYVPPPF--AAAAILEAMEAELDLVVCITEGIP 135
+ LG+ N A A A T N ++V A A LEA+ + L I +G+
Sbjct: 59 KCLGVQPANAAAPAPQNAATMPNLKKVFVVSGHDAIARAELEALLRDWKLEPVILDGLF 117
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 28.3 bits (64), Expect = 5.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 233 DPQTEGIIL-IGEIGG---TAEEDAAAL--IKESGTEKPIVAF 269
D + +GI+L + + G EE AL + SG KP++A+
Sbjct: 44 DDRIKGIVLDLDGLSGGLAKLEELRQALERFRASG--KPVIAY 84
>gnl|CDD|224997 COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy
production and conversion].
Length = 260
Score = 28.4 bits (64), Expect = 5.4
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 60 EQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPFAAAAILEA 119
+QAI+ T VG + E LG P V++ + + LE
Sbjct: 119 KQAIDGDTGQVGPLL-----AELLGWPQVTYVSKIEIVDGGKVTVERELE-----GGLET 168
Query: 120 MEAELDLVVCITEGI 134
+EA L VV + I
Sbjct: 169 VEAPLPAVVTVDLRI 183
>gnl|CDD|199864 cd06240, M14-like_1_3, Peptidase M14-like domain; uncharacterized
subgroup. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 274
Score = 28.5 bits (64), Expect = 5.4
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 246 GGTAEEDAAALIKESGTEKPIVAFIAGLTAP 276
G +EE A L E K IV GL +
Sbjct: 42 RGLSEEQARKLAAEG---KAIVWITGGLHST 69
>gnl|CDD|234854 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 28.1 bits (64), Expect = 6.7
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 21/55 (38%)
Query: 266 IVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVE 320
IV F L GV+ I+S G GTA K L EAG+ V E
Sbjct: 17 IVEFAKALVE--------LGVE--------ILSTG-GTA----KLLAEAGIPVTE 50
>gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3. This translation
releasing factor, RF-3 (prfC) was originally described
as stop codon-independent, in contrast to peptide chain
release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and
RF-2 are closely related to each other, while RF-3 is
similar to elongation factors EF-Tu and EF-G; RF-1 is
active at UAA and UAG and RF-2 is active at UAA and UGA.
More recently, RF-3 was shown to be active primarily at
UGA stop codons in E. coli. All bacteria and organelles
have RF-1. The Mycoplasmas and organelles, which
translate UGA as Trp rather than as a stop codon, lack
RF-2. RF-3, in contrast, seems to be rare among bacteria
and is found so far only in Escherichia coli and some
other gamma subdivision Proteobacteria, in Synechocystis
PCC6803, and in Staphylococcus aureus [Protein
synthesis, Translation factors].
Length = 527
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 227 VTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP--GRRMGHA 284
K + +P + +G D L++ + E + AF G P G +G+
Sbjct: 204 QVKGLNNPALD--SAVGSDLAQQLRDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNF 261
Query: 285 GVDVY 289
GVD +
Sbjct: 262 GVDHF 266
>gnl|CDD|102546 PRK06772, PRK06772, salicylate synthase Irp9; Reviewed.
Length = 434
Score = 28.2 bits (62), Expect = 6.8
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 222 NFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM 281
+ DC +F+A PQ +G + G++G A + +G E P++ LT P +
Sbjct: 75 SIADCARRFMAHPQVKGRRVYGQVGFNFAAHARGIAFNAG-EWPLLT----LTVPREELI 129
Query: 282 GHAG-VDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAML-EVFKQR 336
G V VY + + + ++EAG T +P + A+ E +KQ+
Sbjct: 130 FEKGNVTVY--------ADSADGCRRLCEWVKEAGTTTQNAPLAVDTALNGEAYKQQ 178
>gnl|CDD|223499 COG0422, ThiC, Thiamine biosynthesis protein ThiC [Coenzyme
metabolism].
Length = 432
Score = 28.0 bits (63), Expect = 7.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 65 YGTKMVGGVTPKKGGTEHLGLP 86
G M+ VTP EHLGLP
Sbjct: 318 AGADMLCYVTPA----EHLGLP 335
>gnl|CDD|193543 cd05667, M20_Acy1_like2, M20 Peptidase Aminoacylase 1 subfamily.
Peptidase M20 family, Uncharacterized subfamily of
bacterial proteins that have been predicted as
N-acyl-L-amino acid amidohydrolase (amaA), thermostable
carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus
solfataricus) and abgB (aminobenzoyl-glutamate
utilization protein B), and generally are involved in
the urea cycle and metabolism of amino groups.
Aminoacylases 1 (ACY1s) comprise a class of zinc binding
homodimeric enzymes involved in the hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and is a highly conserved
process that is involved in the protection and stability
of proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 402
Score = 28.0 bits (63), Expect = 8.2
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 229 KFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGH----- 283
KFI P EG GE GG A ++KE + P V I GL PG +G
Sbjct: 135 KFIFQPAEEGA-PPGEEGG-----AKLMVKEGVLKNPKVDAIFGLHVNPGLPVGKIGYRS 188
Query: 284 ----AGVDVYTI 291
A D +TI
Sbjct: 189 GPIMASADRFTI 200
>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding
Rossmann fold. This family of enzymes utilise NADP or
NAD. This family is called the GFO/IDH/MOCA family in
swiss-prot.
Length = 120
Score = 26.8 bits (60), Expect = 9.3
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 51 TGKNGTFHTEQAIEY--GTKMVGGVTPKKGGTE----HLGLPVFNTVAEAKAETKANASA 104
GK G H E G ++VG + P E G+P ++ + E A+ +A +
Sbjct: 8 AGKIGRRHLRALNESQDGAELVGILDPDPARAEAVAESFGVPAYSDLEELLADPDIDAVS 67
Query: 105 IYVPPPFAAAAILEAMEAELDLVV 128
+ PP L A+EA ++
Sbjct: 68 VATPPGLHFELALAALEAGKHVLC 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,376,647
Number of extensions: 1721708
Number of successful extensions: 1972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1943
Number of HSP's successfully gapped: 65
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)