RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019500
(340 letters)
>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 130
Score = 176 bits (447), Expect = 8e-56
Identities = 89/123 (72%), Positives = 101/123 (82%)
Query: 35 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEA 94
++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG HLGLPVFNTV EA
Sbjct: 8 KHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEA 67
Query: 95 KAETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRL 154
K +T A AS IYVPPPFAAAAI EA++AE+ LVVCITEGIPQ DMVRVK L Q KTRL
Sbjct: 68 KEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL 127
Query: 155 VGP 157
+GP
Sbjct: 128 IGP 130
>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 167 bits (424), Expect = 2e-52
Identities = 76/120 (63%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ +DKNT+VICQG TG GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFNTV EA A
Sbjct: 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVA 60
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
T A AS IYVP PF +ILEA++A + L++ ITEGIP DM+ VK L +++ R++G
Sbjct: 61 ATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG 119
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain,
N-terminal (CoA-binding) domain {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 166 bits (423), Expect = 2e-52
Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Query: 37 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 96
+ V++ TRV+ QGITG+ G FHT+Q + YGTK+V GVTP KGG E LG+PV++TV EA A
Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVA 61
Query: 97 ETKANASAIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVG 156
+ +AS I+VP P AA A LEA A + L+V ITEGIP DMVR + +RL+G
Sbjct: 62 HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG 120
>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 176
Score = 141 bits (357), Expect = 6e-42
Identities = 120/184 (65%), Positives = 142/184 (77%), Gaps = 12/184 (6%)
Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
NCPGVI PGECKIGIMPG+IHK GRIGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDP
Sbjct: 1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP 60
Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEK---PIVAFIAGLT 274
FNGT+F DC+ F+ DP TEGIILIGEIGG AEE+AA +K+ + P+V+FIAGLT
Sbjct: 61 FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLT 120
Query: 275 APPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFK 334
APPGRRMGHAG I++GGKG A++KI L+ AGV V SPA++G + + F+
Sbjct: 121 APPGRRMGHAGA---------IIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFE 171
Query: 335 QRGL 338
+R +
Sbjct: 172 KRKM 175
>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 166
Score = 131 bits (330), Expect = 5e-38
Identities = 112/175 (64%), Positives = 130/175 (74%), Gaps = 10/175 (5%)
Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
N PGVI PGECKIGI PG+IHKPG++GIVSRSGTLTYEAV QTT G GQSTCVGIGGDP
Sbjct: 1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP 60
Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
G+NF+D + F DPQTE I++IGEIGG+AEE+AAA IKE T KP+V +IAG+TAP
Sbjct: 61 IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPK 119
Query: 278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEV 332
G+RMGHAG I++GGKGTA +K L AGV V S A IG A+ V
Sbjct: 120 GKRMGHAGA---------IIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV 165
>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 167
Score = 127 bits (319), Expect = 2e-36
Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 10/176 (5%)
Query: 158 NCPGVIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDP 217
NCPG+I E KIGIMPG++ K GR+GI+SRSGTLTYEA + GLG +T VGIGGDP
Sbjct: 1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDP 60
Query: 218 FNGTNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPP 277
GT F D + F DP+TE ++LIGEIGG+ EE+AAA +K+ KP+V FI G +AP
Sbjct: 61 VIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMK-KPVVGFIGGRSAPK 119
Query: 278 GRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVF 333
G+RMGHAG AI+ G GT + K++ EAG+ V ++ +I + +
Sbjct: 120 GKRMGHAG---------AIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 166
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 161
Score = 91.6 bits (227), Expect = 5e-23
Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 25/175 (14%)
Query: 170 IGIMPGYIH---------KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG 220
+GIM ++ K G + +S+SG L V++T +G S + +G
Sbjct: 1 VGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-- 58
Query: 221 TNFVDCVTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRR 280
+F + + + + I L E ++ + K +KPI+A AG + R
Sbjct: 59 VDFAELMEYLADTEEDKAIALYIEGVRNGKK-FMEVAKRVTKKKPIIALKAGKSESGARA 117
Query: 281 MGHAGVDVYTIFGSAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLEVFKQ 335
G+ + +++GV V + ++ + F Q
Sbjct: 118 ASS------------HTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSM-ARAFSQ 159
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 32.1 bits (73), Expect = 0.045
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQ 235
YI G I +G A + G+ G + ADP+
Sbjct: 14 YIGLDGNIACFV-NGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK 72
Query: 236 TEGIIL--IGEI--GGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM 281
E I++ G I +E + P+V + G + +
Sbjct: 73 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNI 122
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 29.8 bits (67), Expect = 0.23
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 176 YIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVTKFIADPQ 235
Y+ G IG + L + G+ G + ++D +
Sbjct: 14 YVALDGNIGCMVNGAGLAM-GTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDK 72
Query: 236 TEGIIL--IGEI--GGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRM 281
+ +++ G I + + E G P+V + G A G +
Sbjct: 73 VKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKK 122
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA,
N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 29.6 bits (66), Expect = 0.24
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 52 GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111
K G + EY V V K E G+ + +V + + + + I VP F
Sbjct: 21 KKLGYEVFKNLKEYKKGKVYPVNIK--EEEVQGVKAYKSVKDIPD--EIDLAIIVVPKRF 76
Query: 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVK-----AALNNQSKTRLVGPNC 159
+++ E + VV IT G + + + ++ R++GPNC
Sbjct: 77 VKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNC 129
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 139
Score = 28.8 bits (64), Expect = 0.54
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 51 TGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110
++ + +E+G + V PK LG + +V + K ++V P
Sbjct: 31 PERDANIVMKYLLEHGYDVYP-VNPKYEEV--LGRKCYPSVLDIP--DKIEVVDLFVKPK 85
Query: 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162
+ +A++ +V + + A +V C
Sbjct: 86 LTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEA-----GLIIVANRCMMR 132
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 116
Score = 28.1 bits (62), Expect = 0.62
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 52 GKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPPF 111
K G + + G +++ V P E GL + +V E + VPP
Sbjct: 14 AKYGNIILKDLLSKGFEVLP-VNPN--YDEIEGLKCYRSVRELPKDVDVIV--FVVPPKV 68
Query: 112 AAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162
EA+EA + + + +R ++ C V
Sbjct: 69 GLQVAKEAVEAGFK--KLWFQPGAESEEIRRFL---EKAGVEYSFGRCIMV 114
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 27.4 bits (59), Expect = 2.4
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 250 EEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTIFGSAIVSGGKGTAQDKIK 309
+ A ++ F + P ++ V TI + + + +I+
Sbjct: 236 YDKAVEALRFWAGCLVPSMFKYKVYDPKEVQLHANLVHCDTIKENYMCATDAEEMIKEIE 295
Query: 310 TLREAGVT--VVESPAKIGAAMLEVFKQ 335
+EAG+ + + + +++FK+
Sbjct: 296 RFKEAGINHFCLGNSSPDVNFGIDIFKE 323
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 26.5 bits (58), Expect = 3.5
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 246 GGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTI 291
GGT A L+ E + LT+ GR A V +++
Sbjct: 131 GGTMNA-ACELLGRLQAEVLECVSLVELTSLKGREK-LAPVPFFSL 174
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 26.2 bits (57), Expect = 3.5
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 51 TGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASAIYVPPP 110
+ + E G +++ V P+ G E G ++ + K + ++ PP
Sbjct: 25 PSRPAHYVPRYLREQGYRVLP-VNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPS 81
Query: 111 FAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNNQSKTRLVGPNCPGV 162
+ E + +V + GI + ++ +V C V
Sbjct: 82 ALMDHLPEVLALRPG-LVWLQSGIRHPEF----EKALKEAGIPVVADRCLMV 128
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 25.4 bits (55), Expect = 7.3
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 246 GGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGVDVYTI 291
GG+A A L+++ F+ L GR V+T+
Sbjct: 135 GGSAAA-AGELVEQLEANLLEYNFVMELDFLKGRSK--LNAPVFTL 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,245,256
Number of extensions: 59577
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 18
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)