Query 019501
Match_columns 340
No_of_seqs 119 out of 154
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c2i_A Methyl-CPG-binding prot 99.9 1.1E-23 3.9E-28 172.0 7.7 68 181-251 21-89 (97)
2 3vxv_A Methyl-CPG-binding doma 99.9 1.1E-23 3.8E-28 162.2 6.6 61 183-246 5-66 (69)
3 2ky8_A Methyl-CPG-binding doma 99.9 7.3E-23 2.5E-27 158.6 7.2 63 180-249 9-72 (72)
4 1d9n_A Methyl-CPG-binding prot 99.9 7.9E-23 2.7E-27 159.9 5.3 64 180-250 7-71 (75)
5 1ub1_A MECP2, attachment regio 99.9 4.5E-22 1.5E-26 170.4 10.0 94 163-259 13-112 (133)
6 2l7p_A Histone-lysine N-methyl 98.5 6.7E-08 2.3E-12 79.4 3.1 53 111-168 23-75 (100)
7 2e61_A Zinc finger CW-type PWW 97.7 9E-06 3.1E-10 62.7 1.7 52 112-169 14-67 (69)
8 4gut_A Lysine-specific histone 84.3 0.12 4E-06 53.7 -1.7 48 114-165 91-144 (776)
9 2law_A Yorkie homolog; YAP, SM 60.1 7.6 0.00026 25.8 3.1 25 179-210 2-26 (38)
10 1wr3_A Ubiquitin-protein ligas 56.5 8.8 0.0003 24.9 2.8 23 181-210 2-24 (36)
11 1i5h_W Rnedd4, ubiquitin ligas 55.5 9.4 0.00032 27.0 3.0 26 179-211 7-32 (50)
12 2ysg_A Syntaxin-binding protei 49.0 14 0.00047 24.8 2.9 25 180-211 4-28 (40)
13 2ho2_A Fe65 protein, amyloid b 48.1 11 0.00038 25.5 2.4 19 183-209 3-21 (38)
14 1yw5_A Peptidyl prolyl CIS/tra 43.8 16 0.00054 31.1 3.2 42 183-230 7-55 (177)
15 2jv4_A Peptidyl-prolyl CIS/tra 43.6 14 0.00049 26.6 2.5 40 182-227 6-52 (54)
16 2l4j_A YES-associated protein 42.7 21 0.00071 24.8 3.1 23 181-210 9-31 (46)
17 2kpz_A E3 ubiquitin-protein li 41.8 16 0.00055 25.5 2.5 24 180-210 9-32 (49)
18 2djy_A SMAD ubiquitination reg 41.6 21 0.00073 24.3 3.0 23 181-210 5-27 (42)
19 2ysf_A E3 ubiquitin-protein li 39.7 25 0.00086 23.5 3.1 23 181-210 5-27 (40)
20 2kyk_A E3 ubiquitin-protein li 36.7 38 0.0013 22.3 3.6 24 181-211 4-27 (39)
21 2zaj_A Membrane-associated gua 35.9 32 0.0011 24.4 3.2 23 181-210 11-33 (49)
22 2ysh_A GAS-7, growth-arrest-sp 32.9 39 0.0013 22.2 3.1 24 180-210 4-27 (40)
23 2dmv_A Itchy homolog E3 ubiqui 31.7 37 0.0013 22.9 2.9 24 180-210 4-27 (43)
24 1wmv_A WWOX, WW domain contain 31.4 37 0.0013 24.4 3.0 24 181-211 9-32 (54)
25 1wr7_A NEDD4-2; all-beta, liga 31.0 40 0.0014 22.5 3.0 22 182-210 7-28 (41)
26 1e0m_A Wwprototype; SH3 protot 28.2 33 0.0011 22.0 2.1 21 183-210 3-23 (37)
27 1ymz_A CC45; artificial protei 27.6 41 0.0014 22.5 2.6 21 183-210 8-28 (43)
28 2ez5_W Dnedd4, E3 ubiquitin-pr 27.6 48 0.0016 22.9 3.0 23 182-211 9-31 (46)
29 3e0o_A Peptide methionine sulf 27.3 84 0.0029 27.2 5.0 92 124-215 8-115 (144)
30 1wee_A PHD finger family prote 26.8 22 0.00074 26.2 1.1 14 113-126 28-41 (72)
31 2jmf_A E3 ubiquitin-protein li 25.6 52 0.0018 23.5 2.9 23 182-211 17-39 (53)
32 1wr4_A Ubiquitin-protein ligas 25.4 68 0.0023 20.3 3.2 23 182-211 3-25 (36)
33 2yse_A Membrane-associated gua 25.4 55 0.0019 24.2 3.1 26 181-213 11-36 (60)
34 3o7a_A PHD finger protein 13 v 24.6 32 0.0011 23.9 1.6 14 113-126 15-28 (52)
35 3tvt_B PINS, partner of inscut 24.5 38 0.0013 24.7 2.0 26 190-216 18-43 (50)
36 1we9_A PHD finger family prote 24.3 27 0.00092 24.9 1.2 14 113-126 19-32 (64)
37 2eom_A ZFP-95, zinc finger pro 24.2 35 0.0012 21.1 1.6 31 117-149 13-44 (46)
38 2ysb_A Salvador homolog 1 prot 23.5 43 0.0015 23.6 2.1 22 183-211 11-32 (49)
39 2eor_A Zinc finger protein 224 23.2 48 0.0016 20.2 2.1 31 117-149 13-44 (46)
40 1wep_A PHF8; structural genomi 23.2 29 0.00099 26.0 1.3 14 113-126 24-37 (79)
41 2dwv_A Salvador homolog 1 prot 22.9 48 0.0016 23.3 2.3 22 182-210 12-33 (49)
42 1wem_A Death associated transc 21.5 32 0.0011 25.4 1.2 36 113-150 27-66 (76)
43 3o70_A PHD finger protein 13; 21.5 40 0.0014 25.0 1.7 14 113-126 30-43 (68)
44 2ysd_A Membrane-associated gua 21.3 77 0.0026 23.0 3.1 23 181-210 12-34 (57)
45 2e45_A Fe65 protein, amyloid b 20.7 58 0.002 24.3 2.4 26 181-214 17-43 (55)
46 3kqi_A GRC5, PHD finger protei 20.5 34 0.0012 25.4 1.2 14 113-126 22-35 (75)
47 1tk7_A CG4244-PB; WW domain, n 20.5 72 0.0024 24.4 3.0 23 180-209 9-31 (88)
48 2eow_A Zinc finger protein 347 20.2 56 0.0019 19.9 2.0 32 117-150 13-45 (46)
No 1
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.89 E-value=1.1e-23 Score=172.05 Aligned_cols=68 Identities=31% Similarity=0.502 Sum_probs=61.0
Q ss_pred CCCCCCCceEEEEEeccCCC-cceEEEEECCCCCccccHHHHHHHHHhCcccccCCcccCcceecCCcCCcc
Q 019501 181 IAQPPPGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQIPKPLQE 251 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst-~~~DVYY~SPtGKKLRSk~EVarYL~~Npey~~~gLtLe~FdFstPK~~~e 251 (340)
.|.+|+||+|++++|++|.+ +++||||+||+||||||++||++||++||++ +|++++|||++++++++
T Consensus 21 ~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~~---~~~~~~FdF~~~~~~~~ 89 (97)
T 3c2i_A 21 DPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDT---SLDPNDFDFTVTGRGSP 89 (97)
T ss_dssp CTTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTCC---SSCTTTCCCCSSCC---
T ss_pred CCCCCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCCC---CCCHhhccccCCCcCcc
Confidence 46789999999999999965 6899999999999999999999999999986 69999999999999875
No 2
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.89 E-value=1.1e-23 Score=162.21 Aligned_cols=61 Identities=34% Similarity=0.610 Sum_probs=57.2
Q ss_pred CCCCCceEEEEEeccCCC-cceEEEEECCCCCccccHHHHHHHHHhCcccccCCcccCcceecCC
Q 019501 183 QPPPGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQIP 246 (340)
Q Consensus 183 ~~P~GWKRevViRksGst-~~~DVYY~SPtGKKLRSk~EVarYL~~Npey~~~gLtLe~FdFstP 246 (340)
.+|+||+|++++|++|.+ ++.||||+||+||||||++||++||+.||++ +|++++|||++|
T Consensus 5 plp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~---~l~~~~FdF~~p 66 (69)
T 3vxv_A 5 PVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET---FLKPEDFNFTVL 66 (69)
T ss_dssp CSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC---CCCGGGSCCCCC
T ss_pred cCCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC---CCCHHHcceeCC
Confidence 579999999999999965 5899999999999999999999999999996 699999999987
No 3
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.87 E-value=7.3e-23 Score=158.61 Aligned_cols=63 Identities=38% Similarity=0.678 Sum_probs=56.5
Q ss_pred CCCCCCCCceEEEEEeccCC-CcceEEEEECCCCCccccHHHHHHHHHhCcccccCCcccCcceecCCcCC
Q 019501 180 NIAQPPPGWQRLLRIRGEGS-TKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQIPKPL 249 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGs-t~~~DVYY~SPtGKKLRSk~EVarYL~~Npey~~~gLtLe~FdFstPK~~ 249 (340)
.+|.+|+||+|++++|++|. .+++||||++|+||||||++||++||.. +|++++|||++|++|
T Consensus 9 ~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~-------~l~~~~FdF~~~~~~ 72 (72)
T 2ky8_A 9 DCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGN-------AVDLSCFDFRTGKMM 72 (72)
T ss_dssp ECSSSCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTT-------SSCCTTCBTTTTBC-
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhc-------CCChhhcCCCCCCcC
Confidence 35577999999999999985 4689999999999999999999999976 589999999999986
No 4
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.87 E-value=7.9e-23 Score=159.89 Aligned_cols=64 Identities=30% Similarity=0.589 Sum_probs=58.2
Q ss_pred CCCCCCCCceEEEEEeccCCC-cceEEEEECCCCCccccHHHHHHHHHhCcccccCCcccCcceecCCcCCc
Q 019501 180 NIAQPPPGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQIPKPLQ 250 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst-~~~DVYY~SPtGKKLRSk~EVarYL~~Npey~~~gLtLe~FdFstPK~~~ 250 (340)
.+|.+|+||+|++++|++|.+ +++||||+||+||||||++||++||+. ++++++|||++++++.
T Consensus 7 ~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~-------~~~~~~FdF~~gk~~~ 71 (75)
T 1d9n_A 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP-------ACDLTLFDFKQGILCY 71 (75)
T ss_dssp ECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT-------TCCCTTCCTTTCCCCC
T ss_pred cCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc-------CCCccccCCCCCCccC
Confidence 456779999999999999966 689999999999999999999999963 5899999999999976
No 5
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.86 E-value=4.5e-22 Score=170.44 Aligned_cols=94 Identities=26% Similarity=0.398 Sum_probs=74.6
Q ss_pred CCCCCCCCcceeeecCCC----CCCCCCCceEEEEEeccCCC-cceEEEEECCCCCccccHHHHHHHHHhCcccccCCcc
Q 019501 163 PTDISQDGSRLWAIDKPN----IAQPPPGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVK 237 (340)
Q Consensus 163 P~Di~~d~sR~WaIDKpn----IP~~P~GWKRevViRksGst-~~~DVYY~SPtGKKLRSk~EVarYL~~Npey~~~gLt 237 (340)
|+-.--.+.|.-+|+..+ .+.+|+||+|++++|++|.+ +++|||||||+||||||++||++||++|+++ +++
T Consensus 13 ~~~~~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~~---~~~ 89 (133)
T 1ub1_A 13 PEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDT---SLD 89 (133)
T ss_dssp CCCCSCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCCC---SCC
T ss_pred cccccCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCcc---CCC
Confidence 333344556777775444 56789999999999999954 6899999999999999999999999999986 689
Q ss_pred cCcceecC-CcCCcccccccCCC
Q 019501 238 MSQFSFQI-PKPLQENYVRKRVP 259 (340)
Q Consensus 238 Le~FdFst-PK~~~e~yvkKrp~ 259 (340)
+++|||++ ++.+.....+|.+.
T Consensus 90 ~e~FdF~~~gk~~~s~R~~r~~k 112 (133)
T 1ub1_A 90 PNDFDFTVTGRGSPSRREQRPPK 112 (133)
T ss_dssp GGGCCCCCCCCSCSSCCCCCCCC
T ss_pred HhHCccccCCCCCCcccccCCCC
Confidence 99999995 56655455444443
No 6
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=98.46 E-value=6.7e-08 Score=79.43 Aligned_cols=53 Identities=28% Similarity=0.576 Sum_probs=39.2
Q ss_pred ccceeeeecccccceeeeccHHHHHHHHhhhcCCCeeeccccccCCCCcCCCCCCCCC
Q 019501 111 SVGAFTVQCADCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQ 168 (340)
Q Consensus 111 si~~yavQC~~C~KWR~IpTke~yEeIRe~~~e~Pf~C~~a~~wrp~~sCddP~Di~~ 168 (340)
.++..+|||.+|.|||.+| .+.++.+. ..+.|+|.+.- ...-.+|+.|+++.-
T Consensus 23 ~~~~~WVQCD~C~KWRrLP-~~~~~~~~---~pd~W~C~mN~-D~~~nsCs~PEE~~~ 75 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIP-ASVVGSID---ESSRWICMNNS-DKRFADCSKSQEMSN 75 (100)
T ss_dssp SSSSEEEECTTTCCEEEEC-HHHHTTST---TSSCCCGGGSS-CSSSCSTTSCCSSCH
T ss_pred CCCCeEEeeCCCCccccCC-hhHccccC---CCCCceeCCCC-CCCCCCCCCccCCCH
Confidence 4578999999999999999 44443332 35999999831 223389999998753
No 7
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=97.72 E-value=9e-06 Score=62.68 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=38.4
Q ss_pred cceeeeecc--cccceeeeccHHHHHHHHhhhcCCCeeeccccccCCCCcCCCCCCCCCC
Q 019501 112 VGAFTVQCA--DCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQD 169 (340)
Q Consensus 112 i~~yavQC~--~C~KWR~IpTke~yEeIRe~~~e~Pf~C~~a~~wrp~~sCddP~Di~~d 169 (340)
...++|||. +|.|||.+|-.... ..+-+.|+|.+.- ..---+|+.|++..-|
T Consensus 14 ~~~~WVQCd~p~C~KWR~LP~~~~~-----~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 14 QCLVWVQCSFPNCGKWRRLCGNIDP-----SVLPDNWSCDQNT-DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCEEECSSTTTCCEEECCSSCCT-----TTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred CCCeEEEeCccccCcccCCcccccc-----ccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence 458999999 99999999954322 2356899999842 3335689999887543
No 8
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=84.29 E-value=0.12 Score=53.68 Aligned_cols=48 Identities=23% Similarity=0.645 Sum_probs=29.8
Q ss_pred eeeeecc--cccceeeeccHHHHHHHHhhhcCCCeeecccccc--C--CCCcCCCCCC
Q 019501 114 AFTVQCA--DCFKWRLIPTKEKYEEIREHVLENPFTCEKAREW--R--PDVSCDDPTD 165 (340)
Q Consensus 114 ~yavQC~--~C~KWR~IpTke~yEeIRe~~~e~Pf~C~~a~~w--r--p~~sCddP~D 165 (340)
-|++||. .|.|||.+++. +.|-..+ -+-|.|....-- + -.=.|.-|+|
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~---~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~ 144 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKE---IQLTPQI-AKTYRCGMKPNTAIKPETSDHCSLPED 144 (776)
T ss_dssp CCEEECCCTTTCCEEECCTT---CCCCHHH-HHHCCTTCCCC-------CCGGGSCCC
T ss_pred cHhhhcCcccccchhhCCCc---CCCChhh-hheeeccCccCcccccccCCCCCCCcc
Confidence 5999999 99999999743 3333333 235899863210 1 1224677776
No 9
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=60.10 E-value=7.6 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.603 Sum_probs=15.5
Q ss_pred CCCCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 179 PNIAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 179 pnIP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
|....+|.||+..+- .+ +.+||+.-
T Consensus 2 ~~~~~LP~gWe~~~~--~~-----G~~Yy~nh 26 (38)
T 2law_A 2 AMEGPLPDGWEQAMT--QD-----GEIYYINH 26 (38)
T ss_dssp ---CCCSSSCCEEEE--TT-----TEEEEEET
T ss_pred CccCCCCCCcEEEEC--CC-----CCEEEEEC
Confidence 345578999987644 22 56899854
No 10
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=56.48 E-value=8.8 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=15.0
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
.+.+|.||+...- . .+.+||+.-
T Consensus 2 ~~~LP~GWe~~~d--~-----~G~~Yy~n~ 24 (36)
T 1wr3_A 2 SPPLPPGWEEKVD--N-----LGRTYYVNH 24 (36)
T ss_dssp CSCSCTTEEEEEC--S-----SSCEEEEET
T ss_pred CCCCCCCCEEEEC--C-----CCCEEEEEC
Confidence 4578999976532 1 256888853
No 11
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=55.50 E-value=9.4 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.635 Sum_probs=16.4
Q ss_pred CCCCCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 179 PNIAQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 179 pnIP~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
.....+|+||+..+- .+ +.+||+.-.
T Consensus 7 ~~~~~LP~gWe~~~~--~~-----Gr~Yy~nh~ 32 (50)
T 1i5h_W 7 NDLGPLPPGWEERTH--TD-----GRVFFINHN 32 (50)
T ss_dssp SCCSSCSTTEEEEEC--TT-----SCEEEEETT
T ss_pred ccCCCCCcCcEEEEc--CC-----CCEEEEECC
Confidence 334567999986532 22 568998544
No 12
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=48.99 E-value=14 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=15.6
Q ss_pred CCCCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 180 NIAQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
+...+|.||++.+- .+ +.+||+.-.
T Consensus 4 ~~~~LP~gWe~~~~--~~-----Gr~Yy~nh~ 28 (40)
T 2ysg_A 4 GSSGLPYGWEEAYT--AD-----GIKYFINHV 28 (40)
T ss_dssp SSSCCCTTEEEEEC--SS-----SCEEEEESS
T ss_pred CcCCCCCCcEEEEc--CC-----CCEEEEECC
Confidence 34567999966532 22 567888543
No 13
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=48.09 E-value=11 Score=25.54 Aligned_cols=19 Identities=32% Similarity=0.713 Sum_probs=12.5
Q ss_pred CCCCCceEEEEEeccCCCcceEEEEEC
Q 019501 183 QPPPGWQRLLRIRGEGSTKFADVYYEA 209 (340)
Q Consensus 183 ~~P~GWKRevViRksGst~~~DVYY~S 209 (340)
.+|+||++.+- . .+ +||+.
T Consensus 3 ~LP~GWe~~~d-----~--~g-~YY~n 21 (38)
T 2ho2_A 3 DLPAGWMRVQD-----T--SG-TYYWH 21 (38)
T ss_dssp CSCTTEEEEEC-----S--SC-EEEEE
T ss_pred cCCCCceEEEe-----C--CC-CEEEe
Confidence 57999986532 1 24 88884
No 14
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=43.80 E-value=16 Score=31.07 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCCCCceEEEEEeccCCCcceEEEEECCCCCccc-------cHHHHHHHHHhCcc
Q 019501 183 QPPPGWQRLLRIRGEGSTKFADVYYEAPSGKKLR-------SMVEIQKYFLEHPE 230 (340)
Q Consensus 183 ~~P~GWKRevViRksGst~~~DVYY~SPtGKKLR-------Sk~EVarYL~~Npe 230 (340)
.+|+||+..+. -++ ...||+.+--+.++ +-.||.+|+.+|.+
T Consensus 7 ~lp~~w~~~~s----~s~--~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~~~~ 55 (177)
T 1yw5_A 7 GLPPNWTIRVS----RSH--NKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKN 55 (177)
T ss_dssp CCCTTEEEEEC----SST--TCEEEEETTTCCEESSCCTTCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHhc----ccC--CchhhhhHHHhhHhhcCcccCCHHHHHHHHHHhHh
Confidence 36999954332 222 56788888776665 77899999999864
No 15
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=43.61 E-value=14 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEEC-CCCCc------cccHHHHHHHHHh
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEA-PSGKK------LRSMVEIQKYFLE 227 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~S-PtGKK------LRSk~EVarYL~~ 227 (340)
..+|+||+. |.+-+. +-+||+- -+|+. .....+|..|+.+
T Consensus 6 ~~LP~GW~~----~~~~~~--Gr~YY~N~~T~~sqWe~P~~~~~~~l~~~~~~ 52 (54)
T 2jv4_A 6 TGLPAGWEV----RHSNSK--NLPYYFNPATRESRWEPPADTDMETLKMYMAT 52 (54)
T ss_dssp CCCCSSCCE----EECSSS--SCEEEEETTTTEEESSCCTTSCHHHHHHHHCS
T ss_pred CCCCCCcEE----EEECCC--CCEEEEECCCCcEEecCCCCccHHHHHHHHHh
Confidence 346999972 333222 5578873 33321 2355666666654
No 16
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=42.73 E-value=21 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=15.1
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
...+|.||+..+- .+ +.+||+.-
T Consensus 9 ~~~LP~gWe~~~~--~~-----G~~Yyinh 31 (46)
T 2l4j_A 9 SGPLPEGWEQAIT--PE-----GEIYYINH 31 (46)
T ss_dssp TSCCCTTCEEEEC--TT-----SCEEEEET
T ss_pred CCCCCcCceeEEC--CC-----CCEEEEEC
Confidence 3467999976643 22 56899854
No 17
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=41.78 E-value=16 Score=25.51 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=14.2
Q ss_pred CCCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 180 NIAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
....+|.||+..+- .+ +.+||+.-
T Consensus 9 ~~~~LP~gWe~~~~--~~-----G~~Yy~nh 32 (49)
T 2kpz_A 9 EQGFLPKGWEVRHA--PN-----GRPFFIDH 32 (49)
T ss_dssp ---CCCTTEEEEEC--TT-----SCEEEEET
T ss_pred cCCCCCCCcEEEEC--CC-----CCEEEEEC
Confidence 34567999976533 22 56899854
No 18
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=41.62 E-value=21 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=14.9
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
...+|.||+..+- .+ +-+||+.-
T Consensus 5 ~~~LP~GWe~~~~--~~-----G~~Yy~nh 27 (42)
T 2djy_A 5 SGPLPPGWEIRNT--AT-----GRVYFVDH 27 (42)
T ss_dssp CSCCCSSEEEEEC--SS-----SCEEEEET
T ss_pred cCCCCcCcEEEEC--CC-----CCEEEEEC
Confidence 4567999976542 22 56888854
No 19
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=39.67 E-value=25 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=14.8
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
-..+|.||+..+- .+ +.+||+.-
T Consensus 5 ~~~LP~gWe~~~~--~~-----G~~Yy~nh 27 (40)
T 2ysf_A 5 SSGLPEGWEMRFT--VD-----GIPYFVDH 27 (40)
T ss_dssp CCCCCSSEEEEEC--TT-----CCEEEEET
T ss_pred cCCCCcCcEEEEc--CC-----CCEEEEEC
Confidence 3567999976532 22 56788854
No 20
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=36.66 E-value=38 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.792 Sum_probs=15.8
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
.+.+|.||+..+- . .+.+||+.-.
T Consensus 4 ~~~LP~gWe~~~d--~-----~G~~YY~n~~ 27 (39)
T 2kyk_A 4 MGPLPPGWERRVD--N-----MGRIYYVDHF 27 (39)
T ss_dssp SCCCCSSCEEEEC--T-----TSCEEEECSS
T ss_pred cCCCCCCcEEEEc--C-----CCCEEEEECC
Confidence 4578999976532 1 2568998644
No 21
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=35.85 E-value=32 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=15.0
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
...+|+||+..+- .. +-+||+.-
T Consensus 11 ~~~LP~GWe~~~d--~~-----Gr~YYvnh 33 (49)
T 2zaj_A 11 ELELPAGWEKIED--PV-----YGIYYVDH 33 (49)
T ss_dssp SSCCCTTEEEEEE--TT-----TEEEEEET
T ss_pred CCCCCcCceEEEc--CC-----CCEEEEeC
Confidence 4567999986643 22 34899854
No 22
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=32.95 E-value=39 Score=22.20 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=14.9
Q ss_pred CCCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 180 NIAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
.-+.+|.||+...- .+ +.+||+.-
T Consensus 4 ~~~~LP~gW~~~~d--~~-----Gr~YY~n~ 27 (40)
T 2ysh_A 4 GSSGLPPGWQSYLS--PQ-----GRRYYVNT 27 (40)
T ss_dssp CCSSCCTTCEEEEC--TT-----SCEEEECS
T ss_pred CCCCCCCCceEEEC--CC-----CCEEEEEC
Confidence 34567999964332 22 56888854
No 23
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.73 E-value=37 Score=22.92 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=15.5
Q ss_pred CCCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 180 NIAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
+-+.+|.||+..+- . .+.+||+.-
T Consensus 4 ~~~~LP~GWe~~~d--~-----~Gr~YY~n~ 27 (43)
T 2dmv_A 4 GSSGLPPGWEQRVD--Q-----HGRVYYVDH 27 (43)
T ss_dssp SCCSCCTTEEEEEC--T-----TSCEEEEET
T ss_pred CCCCCCCCceEEEC--C-----CCCEEEEEC
Confidence 34567999976543 1 256899854
No 24
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=31.40 E-value=37 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
...+|.||+..+- . .+-+||+.-.
T Consensus 9 ~~~LP~GWe~~~~--~-----~G~~Yyinh~ 32 (54)
T 1wmv_A 9 AGDLPYGWEQETD--E-----NGQVFFVDHI 32 (54)
T ss_dssp SSCSCTTEEEEEC--T-----TSCEEEEESS
T ss_pred CCCCCcCcEEEEC--C-----CCCEEEEeCC
Confidence 4468999975532 1 2568888543
No 25
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=31.04 E-value=40 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=14.5
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
..+|.||+..+- .+ +.+||+.-
T Consensus 7 ~~LP~gWe~~~~--~~-----G~~Yy~n~ 28 (41)
T 1wr7_A 7 SFLPPGWEMRIA--PN-----GRPFFIDH 28 (41)
T ss_dssp CSSCTTEEEEEC--TT-----SCEEEEET
T ss_pred CCCCCCcEEEEc--CC-----CCEEEEEC
Confidence 467999976533 22 56899854
No 26
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=28.18 E-value=33 Score=22.01 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=13.0
Q ss_pred CCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 183 QPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 183 ~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
.+|.||+..+- .+ +.+||+.-
T Consensus 3 ~LP~gW~~~~~--~~-----G~~Yy~n~ 23 (37)
T 1e0m_A 3 GLPPGWDEYKT--HN-----GKTYYYNH 23 (37)
T ss_dssp CSCTTEEEEEC--SS-----CCEEEEET
T ss_pred CCCCCcEEEEC--CC-----CCEEEEEC
Confidence 46999976432 22 55788843
No 27
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=27.64 E-value=41 Score=22.50 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=13.2
Q ss_pred CCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 183 QPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 183 ~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
.+|.||++..- . .+.+||+.-
T Consensus 8 ~LP~gW~~~~~--~-----~Gr~YY~n~ 28 (43)
T 1ymz_A 8 PLPPGWERRTD--V-----EGKVYYFNV 28 (43)
T ss_dssp CCCSSEEEEEC--T-----TSCEEEEET
T ss_pred CCCCCCEEEEC--C-----CCCEEEEEC
Confidence 56899966432 1 256888843
No 28
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=27.60 E-value=48 Score=22.88 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=14.7
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
..+|.||++.+- .+ +.+||+.-.
T Consensus 9 ~~LP~gWe~~~~--~~-----Gr~Yyinh~ 31 (46)
T 2ez5_W 9 EPLPPRWSMQVA--PN-----GRTFFIDHA 31 (46)
T ss_dssp CCCCTTEEEEEC--TT-----SSEEEEETT
T ss_pred CCCCcCcEEEEc--CC-----CCEEEEECC
Confidence 357999986643 22 568888543
No 29
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=27.31 E-value=84 Score=27.25 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=62.4
Q ss_pred ceeeeccHHHHHHHHhhhcCCCeeeccccccCCC----CcCCCC---CCCCCCCcceee-ecCC---CCCC---CCCCce
Q 019501 124 KWRLIPTKEKYEEIREHVLENPFTCEKAREWRPD----VSCDDP---TDISQDGSRLWA-IDKP---NIAQ---PPPGWQ 189 (340)
Q Consensus 124 KWR~IpTke~yEeIRe~~~e~Pf~C~~a~~wrp~----~sCddP---~Di~~d~sR~Wa-IDKp---nIP~---~P~GWK 189 (340)
.||..=|.++|.-+|++-.|.||.=+.....+++ +-|..| .+--+|++--|- +++| +|-. .-.|..
T Consensus 8 ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D~s~gm~ 87 (144)
T 3e0o_A 8 EKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDTSHGMI 87 (144)
T ss_dssp HHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEECCTTSC
T ss_pred HHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeecCCCCce
Confidence 5888889999999999999999998877777777 466666 466677766663 3332 2221 236888
Q ss_pred EEEEEeccCCCcceEEEEE--CCCCCcc
Q 019501 190 RLLRIRGEGSTKFADVYYE--APSGKKL 215 (340)
Q Consensus 190 RevViRksGst~~~DVYY~--SPtGKKL 215 (340)
|..|.=+.+....+-||-= .|+|+|.
T Consensus 88 RtEV~C~~Cg~HLGHVF~DGP~ptg~Ry 115 (144)
T 3e0o_A 88 RTEVRSRTADSHLGHVFNDGPGPNGLRY 115 (144)
T ss_dssp EEEEEETTTCCEEEEEESCCSSTTCCEE
T ss_pred EEEEEcCCCCCccCCccCCCCCCCCCEe
Confidence 8666644444445666643 4667653
No 30
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.85 E-value=22 Score=26.21 Aligned_cols=14 Identities=29% Similarity=0.835 Sum_probs=11.9
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
|.+.|||..|..|-
T Consensus 28 g~~mI~Cd~C~~W~ 41 (72)
T 1wee_A 28 GERMLACDGCGVWH 41 (72)
T ss_dssp SSCEEECSSSCEEE
T ss_pred CCcEEECCCCCCcc
Confidence 45789999999994
No 31
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=25.56 E-value=52 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=14.6
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
..+|.||+..+- .+ +-+||+.-.
T Consensus 17 ~~LP~GWe~~~~--~~-----Gr~Yyinh~ 39 (53)
T 2jmf_A 17 GPLPPGWEIRYT--AA-----GERFFVDHN 39 (53)
T ss_dssp SCCCTTEEEEEC--TT-----SCEEEEETT
T ss_pred CCCCcCcEEEEc--CC-----CCEEEEeCC
Confidence 457999976532 22 567888543
No 32
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=25.44 E-value=68 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=14.5
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
..+|.||+...- .+ +.+||+.-.
T Consensus 3 ~~LP~gWe~~~d--~~-----g~~Yy~n~~ 25 (36)
T 1wr4_A 3 PGLPSGWEERKD--AK-----GRTYYVNHN 25 (36)
T ss_dssp TTCCTTEEEEEC--SS-----SCEEEEETT
T ss_pred CCCCCCCEEEEC--CC-----CCEEEEECC
Confidence 457999975422 22 567888644
No 33
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.36 E-value=55 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=15.8
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECCCCC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAPSGK 213 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SPtGK 213 (340)
...+|.||+..+- . . +-+||+--.-|
T Consensus 11 ~~~LP~GWE~~~d--~---~--Gr~YYvnh~tk 36 (60)
T 2yse_A 11 ELELPAGWEKIED--P---V--YGIYYVDHINR 36 (60)
T ss_dssp CSSCCSSEEEEEC--S---S--SCEEEEETTTT
T ss_pred CCCCCCCcEEEEC--C---C--CCEEEEeCCCC
Confidence 3457999976532 1 2 45899854433
No 34
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.60 E-value=32 Score=23.86 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=12.6
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
|.+.|||..|..|-
T Consensus 15 ~~~MI~Cd~C~~W~ 28 (52)
T 3o7a_A 15 GRPMIECNECHTWI 28 (52)
T ss_dssp TCCEEECTTTCCEE
T ss_pred CCCEEEcCCCCccc
Confidence 67899999999994
No 35
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=24.49 E-value=38 Score=24.66 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEeccCCCcceEEEEECCCCCccc
Q 019501 190 RLLRIRGEGSTKFADVYYEAPSGKKLR 216 (340)
Q Consensus 190 RevViRksGst~~~DVYY~SPtGKKLR 216 (340)
|-|++|+.. -...|..-++|+||+|-
T Consensus 18 rmvrvrrqs-meqldlikitpdgkrlq 43 (50)
T 3tvt_B 18 RMVRVRRQD-MEQLDLIKITPDGKRMQ 43 (50)
T ss_pred eEEEeeecc-hhhcCeEEecCCchhhh
Confidence 667777642 23689999999999984
No 36
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.32 E-value=27 Score=24.88 Aligned_cols=14 Identities=29% Similarity=0.684 Sum_probs=11.9
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
+.+.|||..|..|-
T Consensus 19 ~~~mI~Cd~C~~Wf 32 (64)
T 1we9_A 19 DEFWICCDLCEMWF 32 (64)
T ss_dssp SSCEEECSSSCCEE
T ss_pred CCCEEEccCCCCCC
Confidence 45789999999993
No 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.17 E-value=35 Score=21.14 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=19.6
Q ss_pred eecccccceeeeccHHHH-HHHHhhhcCCCeeec
Q 019501 117 VQCADCFKWRLIPTKEKY-EEIREHVLENPFTCE 149 (340)
Q Consensus 117 vQC~~C~KWR~IpTke~y-EeIRe~~~e~Pf~C~ 149 (340)
-+|..|.|.=. ++..+ .-+|-+..+.||.|+
T Consensus 13 ~~C~~C~k~F~--~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eom_A 13 HRCSDCGKFFL--QASNFIQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSSSCCCCS--SHHHHHHHHHHHSSCCCSSCC
T ss_pred cCCCCCCCeeC--ChHHHHHHHHHhCCCCCCCCC
Confidence 46888876532 22222 235667889999997
No 38
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=23.51 E-value=43 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=14.1
Q ss_pred CCCCCceEEEEEeccCCCcceEEEEECCC
Q 019501 183 QPPPGWQRLLRIRGEGSTKFADVYYEAPS 211 (340)
Q Consensus 183 ~~P~GWKRevViRksGst~~~DVYY~SPt 211 (340)
.+|+||+..+-. .+.+||+.-.
T Consensus 11 ~LP~gWe~~~~~-------~Gr~Yy~nh~ 32 (49)
T 2ysb_A 11 PLPPGWSVDWTM-------RGRKYYIDHN 32 (49)
T ss_dssp CCCTTEEEEECS-------SSCEEEEETT
T ss_pred CCCCCceEEECC-------CCCEEEEEcC
Confidence 368999766431 2568998543
No 39
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.24 E-value=48 Score=20.24 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred eecccccceeeeccHHHH-HHHHhhhcCCCeeec
Q 019501 117 VQCADCFKWRLIPTKEKY-EEIREHVLENPFTCE 149 (340)
Q Consensus 117 vQC~~C~KWR~IpTke~y-EeIRe~~~e~Pf~C~ 149 (340)
.+|..|.|.=. ++..+ .-+|.+..+.||.|.
T Consensus 13 ~~C~~C~k~f~--~~~~L~~H~~~H~~~kp~~C~ 44 (46)
T 2eor_A 13 YNCEECGKAFI--HDSQLQEHQRIHTGEKPSGPS 44 (46)
T ss_dssp EECTTTCCEES--SHHHHHHHHHHHHSCCCSSST
T ss_pred ccCCCCCCCcC--CHHHHHHHHHhcCCCCCCCCC
Confidence 46888877533 23322 235677889999997
No 40
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.20 E-value=29 Score=25.96 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=12.3
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
+...|||..|..|=
T Consensus 24 ~~~MIqCd~C~~Wf 37 (79)
T 1wep_A 24 NHFMIECGLCQDWF 37 (79)
T ss_dssp SSCEEEBTTTCCEE
T ss_pred CCceEEcCCCCCcE
Confidence 56889999999994
No 41
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.94 E-value=48 Score=23.33 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=14.0
Q ss_pred CCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 182 AQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 182 P~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
..+|.||+...- . . +-+||+--
T Consensus 12 ~~LP~GWe~~~d--~---~--g~~YYvnh 33 (49)
T 2dwv_A 12 EGLPPGWERVES--S---E--FGTYYVDH 33 (49)
T ss_dssp SCCCTTEEEEEE--T---T--TEEEEEET
T ss_pred CCCCcCcEEEEC--C---C--CCEEEEEC
Confidence 457999976532 1 2 45899853
No 42
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.51 E-value=32 Score=25.38 Aligned_cols=36 Identities=14% Similarity=0.408 Sum_probs=22.6
Q ss_pred ceeeeecccccceeee----ccHHHHHHHHhhhcCCCeeecc
Q 019501 113 GAFTVQCADCFKWRLI----PTKEKYEEIREHVLENPFTCEK 150 (340)
Q Consensus 113 ~~yavQC~~C~KWR~I----pTke~yEeIRe~~~e~Pf~C~~ 150 (340)
+.+.|||..|..|--. -+.+..+.|-. ..+.|+|..
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~--~~~~~~C~~ 66 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLER--NGEDYICPN 66 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHH--HTCCCCCHH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccC--CCCeEECcC
Confidence 4578999999999421 13444444422 356799873
No 43
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.47 E-value=40 Score=24.99 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=12.6
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
|.+.|||..|..|-
T Consensus 30 ~~~MIqCd~C~~Wf 43 (68)
T 3o70_A 30 GRPMIECNECHTWI 43 (68)
T ss_dssp TCCEEECTTTCCEE
T ss_pred CCCEEECCCCCccc
Confidence 77899999999994
No 44
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=21.28 E-value=77 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=15.0
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEECC
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYEAP 210 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~SP 210 (340)
...+|.||+..+- . .+.+||+.-
T Consensus 12 ~~~LP~GWe~~~~--~-----~Gr~Yyinh 34 (57)
T 2ysd_A 12 LGPLPENWEMAYT--E-----NGEVYFIDH 34 (57)
T ss_dssp CCSCCSSEEEEEC--S-----SCCEEEEET
T ss_pred CCCCCcCcEEEEC--C-----CCCEEEEEC
Confidence 4467999976532 1 256899854
No 45
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=20.74 E-value=58 Score=24.28 Aligned_cols=26 Identities=31% Similarity=0.750 Sum_probs=15.7
Q ss_pred CCCCCCCceEEEEEeccCCCcceEEEEE-CCCCCc
Q 019501 181 IAQPPPGWQRLLRIRGEGSTKFADVYYE-APSGKK 214 (340)
Q Consensus 181 IP~~P~GWKRevViRksGst~~~DVYY~-SPtGKK 214 (340)
-+.+|+||++.. +. . + +||+ -++|..
T Consensus 17 ~~~LPpGW~~~~----D~-s--G-tYY~h~~T~tT 43 (55)
T 2e45_A 17 DSDLPAGWMRVQ----DT-S--G-TYYWHIPTGTT 43 (55)
T ss_dssp CSCCCTTEEEEE----ET-T--E-EEEEETTTCCE
T ss_pred CCCCCCCCeEee----cC-C--C-CEEEEcCCCCC
Confidence 455799997643 22 2 4 6665 666654
No 46
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.55 E-value=34 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=12.3
Q ss_pred ceeeeeccccccee
Q 019501 113 GAFTVQCADCFKWR 126 (340)
Q Consensus 113 ~~yavQC~~C~KWR 126 (340)
+.+.|||..|..|-
T Consensus 22 ~~~MI~Cd~C~~Wf 35 (75)
T 3kqi_A 22 TRFMIECDACKDWF 35 (75)
T ss_dssp TSCEEECTTTCCEE
T ss_pred CCCEEEcCCCCCCE
Confidence 56899999999994
No 47
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=20.45 E-value=72 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.745 Sum_probs=14.9
Q ss_pred CCCCCCCCceEEEEEeccCCCcceEEEEEC
Q 019501 180 NIAQPPPGWQRLLRIRGEGSTKFADVYYEA 209 (340)
Q Consensus 180 nIP~~P~GWKRevViRksGst~~~DVYY~S 209 (340)
....+|.||+..+- .+ +-+||+.
T Consensus 9 ~~~~LP~gWe~~~~--~~-----Gr~Yy~n 31 (88)
T 1tk7_A 9 ALGPLPDGWEKKIQ--SD-----NRVYFVN 31 (88)
T ss_dssp TTSSSSSSCCEEEE--TT-----TEEEEEE
T ss_pred ccCCCCCCcEEEEC--CC-----CCEEEEE
Confidence 34467999976643 22 5588884
No 48
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.25 E-value=56 Score=19.93 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred eecccccceeeeccHHHHH-HHHhhhcCCCeeecc
Q 019501 117 VQCADCFKWRLIPTKEKYE-EIREHVLENPFTCEK 150 (340)
Q Consensus 117 vQC~~C~KWR~IpTke~yE-eIRe~~~e~Pf~C~~ 150 (340)
.+|..|.|.= .++.... -+|.+..+.||.|.-
T Consensus 13 ~~C~~C~k~f--~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eow_A 13 YKCNECGKAF--RARSSLAIHQATHSGEKPSGPSS 45 (46)
T ss_dssp EECTTSCCEE--SSHHHHHHHHHHHCCCSCSCTTC
T ss_pred eeccccCChh--cCHHHHHHHHHHcCCCCCCCCCC
Confidence 5799998753 3333332 356778899999973
Done!