Query 019502
Match_columns 340
No_of_seqs 126 out of 1266
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11387 S-methylmethionine tr 100.0 2.9E-48 6.3E-53 369.5 30.0 324 10-338 5-345 (471)
2 PRK10655 potE putrescine trans 100.0 2.1E-48 4.6E-53 367.9 28.8 320 16-338 3-328 (438)
3 PRK10644 arginine:agmatin anti 100.0 4.2E-48 9.1E-53 366.3 29.5 321 15-338 4-330 (445)
4 PRK10435 cadB lysine/cadaverin 100.0 3E-48 6.6E-53 365.9 28.2 319 16-338 2-326 (435)
5 PRK15049 L-asparagine permease 100.0 2E-47 4.3E-52 365.0 31.0 320 15-338 24-359 (499)
6 PRK10249 phenylalanine transpo 100.0 3.4E-47 7.4E-52 360.6 30.1 321 12-338 14-348 (458)
7 TIGR00905 2A0302 transporter, 100.0 3E-47 6.4E-52 362.8 28.9 320 17-338 5-338 (473)
8 TIGR00906 2A0303 cationic amin 100.0 4.3E-47 9.3E-52 366.0 29.4 322 14-338 23-370 (557)
9 PRK10238 aromatic amino acid t 100.0 1.5E-46 3.2E-51 356.1 30.1 318 15-338 8-339 (456)
10 PRK11357 frlA putative fructos 100.0 4E-46 8.6E-51 352.9 30.3 322 14-338 3-337 (445)
11 PRK11021 putative transporter; 100.0 1.2E-45 2.7E-50 346.1 30.6 312 21-338 1-316 (410)
12 TIGR01773 GABAperm gamma-amino 100.0 1.2E-45 2.7E-50 350.2 29.9 319 14-338 7-341 (452)
13 PRK10746 putative transport pr 100.0 1.3E-45 2.8E-50 349.7 29.9 319 14-338 5-339 (461)
14 PRK10836 lysine transporter; P 100.0 1.7E-45 3.7E-50 351.9 29.3 320 14-338 10-352 (489)
15 TIGR03810 arg_ornith_anti argi 100.0 1.7E-45 3.7E-50 350.3 29.1 318 19-338 1-334 (468)
16 TIGR00908 2A0305 ethanolamine 100.0 3.3E-45 7.1E-50 346.5 29.6 320 13-338 1-332 (442)
17 TIGR00909 2A0306 amino acid tr 100.0 3E-45 6.4E-50 345.8 28.4 320 17-338 1-335 (429)
18 PRK10580 proY putative proline 100.0 6.7E-45 1.5E-49 345.4 30.1 319 14-338 4-338 (457)
19 PRK11049 D-alanine/D-serine/gl 100.0 2E-44 4.4E-49 342.8 29.4 319 14-338 15-350 (469)
20 KOG1287 Amino acid transporter 100.0 6.6E-45 1.4E-49 332.2 22.8 324 13-338 6-343 (479)
21 TIGR00911 2A0308 L-type amino 100.0 5.8E-44 1.3E-48 342.7 30.0 324 13-338 36-374 (501)
22 TIGR00913 2A0310 amino acid pe 100.0 1.5E-43 3.2E-48 338.5 28.5 316 18-338 1-345 (478)
23 PRK10197 gamma-aminobutyrate t 100.0 5E-43 1.1E-47 331.1 27.8 304 29-338 2-321 (446)
24 TIGR03428 ureacarb_perm permea 100.0 3.4E-42 7.4E-47 328.2 28.6 323 13-337 7-355 (475)
25 PF13520 AA_permease_2: Amino 100.0 5E-41 1.1E-45 316.9 28.6 313 21-338 1-328 (426)
26 COG1113 AnsP Gamma-aminobutyra 100.0 1.2E-41 2.6E-46 306.0 21.0 318 14-338 8-342 (462)
27 TIGR00907 2A0304 amino acid pe 100.0 7E-41 1.5E-45 320.2 25.6 324 13-338 6-363 (482)
28 COG0833 LysP Amino acid transp 100.0 1E-40 2.3E-45 305.9 23.5 318 16-338 41-381 (541)
29 COG0531 PotE Amino acid transp 100.0 4E-40 8.7E-45 314.3 28.5 324 12-338 5-343 (466)
30 KOG1286 Amino acid transporter 100.0 8E-41 1.7E-45 316.6 20.5 323 14-337 25-375 (554)
31 TIGR03813 put_Glu_GABA_T putat 100.0 2.1E-39 4.5E-44 309.2 30.3 316 19-338 1-336 (474)
32 TIGR00930 2a30 K-Cl cotranspor 100.0 9.8E-40 2.1E-44 328.0 28.0 323 15-338 72-445 (953)
33 TIGR00910 2A0307_GadC glutamat 100.0 3.2E-38 6.8E-43 302.0 29.3 317 17-338 2-338 (507)
34 KOG1289 Amino acid transporter 100.0 9.2E-39 2E-43 292.4 20.4 322 14-338 43-398 (550)
35 PRK15238 inner membrane transp 100.0 7.8E-37 1.7E-41 292.8 30.3 319 16-338 4-372 (496)
36 PF00324 AA_permease: Amino ac 100.0 4E-39 8.6E-44 307.8 8.1 311 27-338 3-345 (478)
37 TIGR00837 araaP aromatic amino 100.0 3.4E-27 7.4E-32 219.4 20.6 281 27-310 3-296 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.8E-24 3.9E-29 199.6 26.5 285 19-312 1-295 (359)
39 PHA02764 hypothetical protein; 99.9 5E-20 1.1E-24 157.6 20.6 277 12-332 5-285 (399)
40 TIGR00814 stp serine transport 99.8 5.6E-18 1.2E-22 156.6 26.2 281 27-314 9-312 (397)
41 PF03222 Trp_Tyr_perm: Tryptop 99.8 3.1E-17 6.6E-22 152.0 27.2 291 19-311 1-303 (394)
42 PF03845 Spore_permease: Spore 99.8 3.9E-17 8.5E-22 148.2 27.5 283 20-313 1-292 (320)
43 TIGR00796 livcs branched-chain 99.8 1E-16 2.2E-21 146.4 27.8 274 30-312 4-299 (378)
44 PRK10483 tryptophan permease; 99.8 7E-17 1.5E-21 148.5 25.9 296 16-313 6-313 (414)
45 PRK09664 tryptophan permease T 99.8 3E-16 6.5E-21 144.2 25.1 289 22-312 10-313 (415)
46 COG0814 SdaC Amino acid permea 99.8 5.8E-16 1.3E-20 144.4 25.7 291 15-307 3-309 (415)
47 PRK15132 tyrosine transporter 99.8 7.2E-16 1.6E-20 142.3 25.3 291 22-314 4-303 (403)
48 KOG1288 Amino acid transporter 99.7 3.7E-17 8.1E-22 152.5 11.9 267 66-339 113-431 (945)
49 KOG2083 Na+/K+ symporter [Inor 99.7 3.3E-16 7E-21 144.9 13.0 321 16-338 25-374 (643)
50 PRK13629 threonine/serine tran 99.6 2.1E-13 4.6E-18 125.6 26.2 285 28-314 26-347 (443)
51 KOG2082 K+/Cl- cotransporter K 99.6 2.7E-14 5.8E-19 134.7 13.4 313 19-338 112-553 (1075)
52 PF01235 Na_Ala_symp: Sodium:a 99.5 4.5E-11 9.7E-16 109.8 24.9 291 14-313 12-338 (416)
53 KOG1303 Amino acid transporter 99.4 1.8E-11 3.9E-16 113.8 20.9 277 17-304 34-326 (437)
54 COG1115 AlsT Na+/alanine sympo 99.4 1.3E-10 2.8E-15 105.8 24.5 292 16-316 58-385 (452)
55 TIGR00835 agcS amino acid carr 99.4 2.3E-10 4.9E-15 105.8 26.1 288 18-316 44-368 (425)
56 PLN03074 auxin influx permease 99.2 1.7E-09 3.7E-14 102.7 21.6 235 19-261 44-294 (473)
57 COG3949 Uncharacterized membra 99.2 1.5E-08 3.2E-13 88.8 23.8 273 26-311 8-287 (349)
58 PTZ00206 amino acid transporte 99.1 8.6E-09 1.9E-13 98.2 19.7 235 24-261 63-319 (467)
59 KOG1304 Amino acid transporter 99.1 3.2E-08 6.9E-13 91.2 21.7 283 18-311 44-348 (449)
60 PF01490 Aa_trans: Transmembra 98.8 1.5E-10 3.2E-15 108.9 -6.6 285 19-314 1-303 (409)
61 TIGR02119 panF sodium/pantothe 98.8 3E-05 6.5E-10 74.4 29.7 285 17-308 38-345 (471)
62 PRK09442 panF sodium/panthothe 98.7 3.5E-05 7.6E-10 74.1 29.3 282 17-307 39-345 (483)
63 PRK11375 allantoin permease; P 98.7 2E-05 4.3E-10 75.5 25.4 297 14-321 20-344 (484)
64 TIGR00813 sss transporter, SSS 98.6 4.3E-05 9.2E-10 71.9 26.4 281 18-309 2-322 (407)
65 PF05525 Branch_AA_trans: Bran 98.6 3.7E-05 7.9E-10 71.6 24.0 276 30-314 12-307 (427)
66 PRK15433 branched-chain amino 98.5 5.4E-05 1.2E-09 70.5 23.6 276 28-313 15-310 (439)
67 PRK11017 codB cytosine permeas 98.4 0.00061 1.3E-08 64.0 28.1 224 16-249 6-233 (404)
68 PRK12488 acetate permease; Pro 98.4 0.00049 1.1E-08 67.2 27.7 153 17-177 65-220 (549)
69 COG1457 CodB Purine-cytosine p 98.4 0.00035 7.5E-09 65.2 24.6 198 55-260 55-256 (442)
70 COG0591 PutP Na+/proline sympo 98.4 0.0005 1.1E-08 66.1 26.6 285 15-308 34-352 (493)
71 TIGR02121 Na_Pro_sym sodium/pr 98.4 0.0015 3.3E-08 62.9 30.0 282 17-308 34-345 (487)
72 PF00474 SSF: Sodium:solute sy 98.4 6E-05 1.3E-09 70.9 20.0 283 18-309 5-320 (406)
73 COG1114 BrnQ Branched-chain am 98.4 0.0008 1.7E-08 61.5 25.3 277 24-310 8-305 (431)
74 PRK10484 putative transporter; 98.3 0.0019 4.1E-08 62.8 29.3 286 17-308 36-354 (523)
75 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.0013 2.8E-08 62.6 27.5 238 13-255 6-263 (442)
76 PRK15419 proline:sodium sympor 98.3 0.0025 5.4E-08 61.7 29.2 282 17-308 38-352 (502)
77 COG0733 Na+-dependent transpor 98.3 0.0028 6.1E-08 58.7 27.6 279 22-302 10-324 (439)
78 TIGR02711 symport_actP cation/ 98.3 0.0023 4.9E-08 62.6 28.2 281 17-306 65-379 (549)
79 PRK09395 actP acetate permease 98.2 0.0032 7E-08 61.6 29.3 150 17-174 67-219 (551)
80 TIGR02358 thia_cytX probable h 98.2 0.0052 1.1E-07 57.3 27.6 173 85-259 59-232 (386)
81 PF02133 Transp_cyt_pur: Perme 98.1 0.00017 3.6E-09 68.6 17.1 232 16-251 4-253 (440)
82 KOG1305 Amino acid transporter 98.0 0.00011 2.3E-09 68.6 13.5 240 17-262 2-258 (411)
83 TIGR03648 Na_symport_lg probab 97.9 0.015 3.3E-07 57.0 26.4 146 17-172 30-180 (552)
84 COG1953 FUI1 Cytosine/uracil/t 97.9 0.018 3.9E-07 54.2 24.5 297 15-323 35-360 (497)
85 PF01566 Nramp: Natural resist 97.8 0.015 3.3E-07 53.7 23.7 240 66-315 22-287 (358)
86 PRK00701 manganese transport p 97.3 0.17 3.7E-06 48.0 25.1 64 66-129 74-139 (439)
87 COG4145 PanF Na+/panthothenate 96.7 0.43 9.4E-06 43.4 25.9 290 17-316 37-356 (473)
88 PF02028 BCCT: BCCT family tra 96.5 0.84 1.8E-05 43.8 26.1 304 15-322 69-431 (485)
89 COG4147 DhlC Predicted symport 96.4 0.9 1.9E-05 42.8 21.2 271 37-317 61-383 (529)
90 COG1914 MntH Mn2+ and Fe2+ tra 96.3 0.96 2.1E-05 42.4 25.9 105 66-175 57-164 (416)
91 PF00209 SNF: Sodium:neurotran 96.2 0.71 1.5E-05 45.0 19.0 107 147-255 189-305 (523)
92 PLN00149 potassium transporter 96.2 0.28 6E-06 49.1 15.9 207 111-326 171-389 (779)
93 PLN00150 potassium ion transpo 96.2 0.039 8.4E-07 54.9 10.0 204 111-326 188-402 (779)
94 PF02705 K_trans: K+ potassium 95.9 1 2.3E-05 43.4 18.1 246 67-326 49-319 (534)
95 PLN00148 potassium transporter 95.8 0.15 3.3E-06 50.9 12.3 205 110-326 170-385 (785)
96 PLN00151 potassium transporter 95.2 0.091 2E-06 52.5 8.3 203 111-326 248-462 (852)
97 PRK10745 trkD potassium transp 94.8 1 2.2E-05 44.1 14.2 207 106-326 113-330 (622)
98 PRK09950 putative transporter; 94.1 6 0.00013 38.2 24.1 36 281-316 399-434 (506)
99 PRK09928 choline transport pro 93.9 7.7 0.00017 38.8 23.4 35 282-316 407-441 (679)
100 TIGR00794 kup potassium uptake 93.5 0.6 1.3E-05 46.3 9.9 205 110-326 141-356 (688)
101 KOG4303 Vesicular inhibitory a 92.7 0.17 3.7E-06 45.4 4.4 160 16-180 112-281 (524)
102 KOG2349 Na+:iodide/myo-inosito 92.3 2.7 6E-05 41.0 12.4 280 18-311 44-362 (585)
103 KOG3660 Sodium-neurotransmitte 91.4 2.6 5.6E-05 41.8 11.3 203 22-227 39-314 (629)
104 KOG2466 Uridine permease/thiam 90.4 17 0.00036 34.7 17.2 220 15-243 50-298 (572)
105 KOG3659 Sodium-neurotransmitte 90.3 15 0.00032 35.9 14.8 123 136-259 252-383 (629)
106 TIGR00842 bcct choline/carniti 89.2 21 0.00046 34.1 23.6 33 282-314 354-386 (453)
107 PF02554 CstA: Carbon starvati 88.4 20 0.00044 33.0 21.1 104 17-124 48-154 (376)
108 COG1292 BetT Choline-glycine b 88.1 26 0.00057 33.9 25.1 57 268-324 389-446 (537)
109 PRK03356 L-carnitine/gamma-but 87.0 31 0.00067 33.5 25.2 35 282-316 403-437 (504)
110 TIGR00796 livcs branched-chain 85.7 31 0.00066 32.2 13.8 93 88-184 259-351 (378)
111 COG1966 CstA Carbon starvation 81.9 53 0.0011 32.0 14.8 101 19-126 50-156 (575)
112 TIGR01197 nramp NRAMP (natural 81.8 46 0.00099 31.2 29.7 54 270-324 282-335 (390)
113 PF05525 Branch_AA_trans: Bran 76.3 72 0.0016 30.3 15.4 93 88-184 265-357 (427)
114 COG3158 Kup K+ transporter [In 75.4 85 0.0018 30.7 13.5 254 56-326 59-335 (627)
115 PRK15433 branched-chain amino 65.2 1.3E+02 0.0028 28.7 14.4 91 89-184 270-360 (439)
116 PF03806 ABG_transport: AbgT p 54.7 1.4E+02 0.003 28.9 10.1 94 65-164 306-405 (502)
117 COG1114 BrnQ Branched-chain am 53.8 2E+02 0.0043 27.2 14.5 75 88-166 267-341 (431)
118 PRK15015 carbon starvation pro 49.1 3E+02 0.0064 27.8 14.3 99 22-126 84-187 (701)
119 PTZ00206 amino acid transporte 46.2 1.7E+02 0.0037 28.1 9.6 57 267-323 120-176 (467)
120 PF12263 DUF3611: Protein of u 45.3 1.8E+02 0.0038 24.1 9.8 24 229-252 97-120 (183)
121 KOG1289 Amino acid transporter 38.2 4E+02 0.0086 26.2 15.7 60 64-123 302-364 (550)
122 PRK00968 tetrahydromethanopter 36.9 51 0.0011 27.7 3.7 33 221-253 203-236 (240)
123 PF06454 DUF1084: Protein of u 34.9 3.3E+02 0.0071 24.2 11.4 51 207-257 177-230 (281)
124 PHA03164 hypothetical protein; 31.3 47 0.001 22.7 2.2 33 221-253 47-79 (88)
125 COG4060 MtrD Tetrahydromethano 25.1 99 0.0021 25.1 3.4 32 222-253 194-226 (230)
126 PF11174 DUF2970: Protein of u 24.5 2.1E+02 0.0045 18.5 4.7 46 204-252 4-49 (56)
127 KOG1286 Amino acid transporter 20.9 2.7E+02 0.0058 27.6 6.2 42 143-184 160-201 (554)
No 1
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.9e-48 Score=369.55 Aligned_cols=324 Identities=18% Similarity=0.163 Sum_probs=269.7
Q ss_pred ccccccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhh
Q 019502 10 VQQKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVI 88 (340)
Q Consensus 10 ~~~~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~ 88 (340)
++|++++++|+++.+++++++++.++| |+|..++.....+||...+++|++++++ .++.+++++|+++++|++||.|.
T Consensus 5 ~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~ 83 (471)
T PRK11387 5 TSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHV 83 (471)
T ss_pred CCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHH
Confidence 344445689999999999999999999 9998888775557875558899999985 99999999999999999999999
Q ss_pred hHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHH
Q 019502 89 WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (340)
Q Consensus 89 ~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (340)
|++|.+||..||.+||.+|+.|....+........+++.++|. .+.+...+++.++.+.+|++|+|..++++.+..
T Consensus 84 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 84 YAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999988877777666666666652 233444455667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc------cCC-------CccccccCccc---hHHHHHHHHHhhhhHHhhhhhhhhccCCCCcH
Q 019502 169 VFSLCPFVVMGILSIPRI------KPR-------RWLVVDFKKVD---WRGYFNSMFWNLNYWDKASTLAGEVENPSKTF 232 (340)
Q Consensus 169 ~~~~~~l~~~~i~~~~~~------~~~-------~~~~~~~~~~~---~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~ 232 (340)
.++++.++.+++.++... +.. ++.+.++.+.+ +...+..++|+|.|+|.+++++||+|||+|++
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 888887776666554211 111 11111111222 22333457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502 233 PKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (340)
Q Consensus 233 p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 312 (340)
||+++.+..+..++|++..++.....|.++...+++|..+.+++.++++...++.+..+++.+++.++.+.+.||++++|
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ 319 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSL 319 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999998888988877667899999999888999999999999999999999999999999999
Q ss_pred hhcCCchHHHhhccCCCCcceeeeEe
Q 019502 313 SEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 313 a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
||||.+|++|+|+||+++|++|++++
T Consensus 320 ardg~lP~~f~~~~~~~~P~~Ail~~ 345 (471)
T PRK11387 320 SNEGTLPACFARLTKRGIPLTALSVS 345 (471)
T ss_pred HhcCCcCHHHHHhCCCCCcHHHHHHH
Confidence 99999999999999999999998654
No 2
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=2.1e-48 Score=367.87 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=273.9
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
+++||+++++++++++++++| |+|..|..+.. .|+.. +++|++++++ .++.+++++|+++++|++||.|.|++|.+
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~-~G~~~-~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~ 79 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQ-VGTIS-ILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAF 79 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHH-hhHHH-HHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHc
Confidence 458899999999999999999 99999988776 67754 7899998884 99999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
||..||+.+|.+++.+.......+....+|+..++|...++++..++.++++++.+++|++|+|..++++.+....+++.
T Consensus 80 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~ 159 (438)
T PRK10655 80 GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIP 159 (438)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666666778888777633334556667777888999999999999999999998888887
Q ss_pred HHHHHHHHhccccCCCccccc-cCcc----chHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKPRRWLVVD-FKKV----DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (340)
Q Consensus 175 l~~~~i~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l 249 (340)
++++++.++.+.+++++.+.. .++. ++...+...+|+|.|+|.+++++||+|||+||+||+++.+..+.+++|++
T Consensus 160 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l 239 (438)
T PRK10655 160 VVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIV 239 (438)
T ss_pred HHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 777777666555555543221 1111 22233456789999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCC
Q 019502 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYN 329 (340)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~ 329 (340)
...+.....|++++.+++.|..+..++..+++...++.+..+++.+++.+++..+.+|++++++|||.+|++|+|+||++
T Consensus 240 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~ 319 (438)
T PRK10655 240 STNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVD 319 (438)
T ss_pred HHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcCC
Confidence 99888888888877767789888888888888888999999999999999999999999999999999999999999999
Q ss_pred CcceeeeEe
Q 019502 330 GLLVTLRIK 338 (340)
Q Consensus 330 ~P~~a~~~~ 338 (340)
+|+++++++
T Consensus 320 tP~~all~~ 328 (438)
T PRK10655 320 APVQGMLII 328 (438)
T ss_pred CCHHHHHHH
Confidence 999998753
No 3
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=4.2e-48 Score=366.29 Aligned_cols=321 Identities=19% Similarity=0.293 Sum_probs=272.6
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
.+++||+++++++++.++.++| |+|..|+.+.. .|+. .+++|+++++. .++.+++++|+++++|++||.|+|++|.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~-~g~~-~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH-HHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 3578999999999999999999 99999888766 4554 47889998885 9999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+||+.|+.++|.+|+.++............+...++|....++...+..++++++.+++|++|+|..+++|.+...++++
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999998877766666666777777764433445556667788889999999999999999999999988
Q ss_pred HHHHHHHHHhccccCCCccccc-cC-ccchH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 019502 174 PFVVMGILSIPRIKPRRWLVVD-FK-KVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (340)
Q Consensus 174 ~l~~~~i~~~~~~~~~~~~~~~-~~-~~~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~ 248 (340)
.++.+.+.++...+++++.+.. .+ ..++. ..+...+|+|.|+|.+.+++||+|||+|++||+++.+..+..++|+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~ 240 (445)
T PRK10644 161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240 (445)
T ss_pred HHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHH
Confidence 8887777766554443332211 11 11222 2345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCC
Q 019502 249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLY 328 (340)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~ 328 (340)
+...+.....|+++...++.|+.+..++..+++...++.+..+++.+++.++++...+|++++|+|||.+|++|+|+||+
T Consensus 241 l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~~ 320 (445)
T PRK10644 241 LSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA 320 (445)
T ss_pred HHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcC
Confidence 99999999999888776778999999998888888888888899999999999999999999999999999999999999
Q ss_pred CCcceeeeEe
Q 019502 329 NGLLVTLRIK 338 (340)
Q Consensus 329 ~~P~~a~~~~ 338 (340)
++|++|++++
T Consensus 321 ~tP~~Ai~~~ 330 (445)
T PRK10644 321 GTPVAGLLIV 330 (445)
T ss_pred CCCHHHHHHH
Confidence 9999998754
No 4
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=3e-48 Score=365.90 Aligned_cols=319 Identities=20% Similarity=0.215 Sum_probs=273.0
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
+++||++.++++++.+++++| |+|.+|..++. .|+. .+++|+++++. .++.+++++|+++++|++||.|+|++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~-~G~~-~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLAS-IGSI-AIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 568999999999999999999 99999998876 7776 57899999885 999999999999999999999999999 8
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
||..|+.++|.||...+...........+|+..++|.+.++.+..+..++++++.+++|++|+|..++++.+....++++
T Consensus 78 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~ 157 (435)
T PRK10435 78 SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIP 157 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777776666677778888888755444555566677888899999999999999999988887777
Q ss_pred HHHHHHHHhccccCCCccccc--cCccchH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKPRRWLVVD--FKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (340)
Q Consensus 175 l~~~~i~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l 249 (340)
++.+.+.+..+.+++++.+.. ..+.++. ..+..++|+|.|+|.+.+++||+|||+||+||+++.+..++.++|++
T Consensus 158 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil 237 (435)
T PRK10435 158 VVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIA 237 (435)
T ss_pred HHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 666666665544443322111 1122233 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCC
Q 019502 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYN 329 (340)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~ 329 (340)
..++....+|+++.+.++.|+.+..+...+++...++.+..+++++++.+++....+|..+++||||.+||+|+|+||++
T Consensus 238 ~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk~g 317 (435)
T PRK10435 238 ATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDKNG 317 (435)
T ss_pred HHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCC
Confidence 99999999999888777889999999999999999999989999999999999999999999999999999999999999
Q ss_pred CcceeeeEe
Q 019502 330 GLLVTLRIK 338 (340)
Q Consensus 330 ~P~~a~~~~ 338 (340)
+|++|++++
T Consensus 318 ~P~~Al~~~ 326 (435)
T PRK10435 318 IPKKGLLLA 326 (435)
T ss_pred CCHHHHHHH
Confidence 999997653
No 5
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=2e-47 Score=364.97 Aligned_cols=320 Identities=14% Similarity=0.122 Sum_probs=268.6
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
+++||+++.+++.+++++.++| |+|..++.....+||.. +++|++++++ .++.+++++||++++|++||.|+|++|.
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~-il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPAL-ALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHH-HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3588999999999999999999 99988886655588865 7899999884 9999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+||+.||++||.+|+.|....+......+.+...+ +.+. ..+.+...++++++.+.+|++|+|..++++.++..+++.
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877666666666666543 2111 234556677888899999999999999999999999988
Q ss_pred HHHHHHHHHhccc---cCC--C---cccc----ccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH
Q 019502 174 PFVVMGILSIPRI---KPR--R---WLVV----DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (340)
Q Consensus 174 ~l~~~~i~~~~~~---~~~--~---~~~~----~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~ 238 (340)
.++.+++.++... ++. + +... +..+.++...+ ..++|+|.|+|.+.+++||+|||+|++||++..
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~ 259 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINS 259 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH
Confidence 7777666554321 111 1 1110 11133444333 357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCc
Q 019502 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (340)
Q Consensus 239 ~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 318 (340)
+.....++|++...+....+|.++++.+..|+.+.+++.+.++...++.+..+++.+++.++.+++.||++|+|||||.+
T Consensus 260 ~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~l 339 (499)
T PRK15049 260 VIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSA 339 (499)
T ss_pred HHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999998887777899999998888999999999999999999999999999999999999999
Q ss_pred hHHHhhccCCCCcceeeeEe
Q 019502 319 PAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 319 P~~~~~~~~~~~P~~a~~~~ 338 (340)
|++|+|+||+++|++|++++
T Consensus 340 P~~f~kv~k~~~P~~Ail~~ 359 (499)
T PRK15049 340 PSFMAKMSRQHVPYAGILAT 359 (499)
T ss_pred CHHHHHhCCCCCCHHHHHHH
Confidence 99999999999999998654
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=3.4e-47 Score=360.59 Aligned_cols=321 Identities=15% Similarity=0.162 Sum_probs=273.0
Q ss_pred ccccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH
Q 019502 12 QKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (340)
Q Consensus 12 ~~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 90 (340)
++.++++|+++.+++.+++++.++| |+|..++...+.+||. .+++|++.+++ .++.+++++|+++++|++||.|.|+
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~-~~~~~~~~aEl~~~~P~~Gg~~~y~ 91 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGII-AFLIMRQLGEMVVEEPVSGSFAHFA 91 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3345789999999999999999999 9998888776658886 57899999985 9999999999999999999999999
Q ss_pred HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHH
Q 019502 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (340)
+|.+||..|+.+||.+|+.+....+.+....+.+++.++|. .+.+....+++++.+.+|++|+|..++++.+...+
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALI 167 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 99999999999999999999888888888888888877763 34455567888889999999999999999999998
Q ss_pred HHHHHHHHHHHHhcc---ccC---CCccc----cccCccchHHH---HHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH
Q 019502 171 SLCPFVVMGILSIPR---IKP---RRWLV----VDFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (340)
Q Consensus 171 ~~~~l~~~~i~~~~~---~~~---~~~~~----~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~ 237 (340)
++..++.+++.++.. .++ .++.+ .+..+.+|.+. +...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 168 kv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 887666665554421 111 11111 11113455543 456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 019502 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (340)
Q Consensus 238 ~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 317 (340)
.+.....++|++...+.....|+++...+.+|+.+..++..+++...++.+..+++.+++.++.+.+.||++|++||||.
T Consensus 248 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~ 327 (458)
T PRK10249 248 QVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGN 327 (458)
T ss_pred HHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998888888887666689999999888888999999999999999999999999999999999999
Q ss_pred chHHHhhccCCCCcceeeeEe
Q 019502 318 LPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 318 lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+|++|+|+||+++|++|++++
T Consensus 328 lP~~~~kv~~~~~P~~All~~ 348 (458)
T PRK10249 328 APKFLTRVSRRGVPINSLMLS 348 (458)
T ss_pred cCHHHHHhCCCCCCHHHHHHH
Confidence 999999999999999998754
No 7
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3e-47 Score=362.82 Aligned_cols=320 Identities=23% Similarity=0.303 Sum_probs=274.4
Q ss_pred cCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~-~Gg~y~~~~~~~ 94 (340)
++|++|+++++++.+++++| |+|..|..+...+|+...+++|++.+++ .++.+++|+|+++++|+ +||.|+|++|.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 48899999999999999999 9999998887667887667899998884 89999999999999999 999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
||+.|+..||.+|+.++......+....+++..++|.+. .+++..+..++++++.+++|++|+|..+|+|.+...+++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l 163 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKL 163 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 999999999999998888777777777788888777432 345556677788888999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCcc----ccccC--ccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHH
Q 019502 173 CPFVVMGILSIPRIKPRRWL----VVDFK--KVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (340)
Q Consensus 173 ~~l~~~~i~~~~~~~~~~~~----~~~~~--~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~ 243 (340)
+.++++++.++...+.+++. +...+ +.++.. .+...+|+|.|+|...+++||+|| +|++||+++.+..++
T Consensus 164 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~ 242 (473)
T TIGR00905 164 IPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGA 242 (473)
T ss_pred HHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHH
Confidence 88887777776544433321 11110 112333 334578999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccccch-HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHH
Q 019502 244 VSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (340)
Q Consensus 244 ~i~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 322 (340)
+++|++...+.....+++++.+++.| ..+..++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|+++
T Consensus 243 ~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~ 322 (473)
T TIGR00905 243 LVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIF 322 (473)
T ss_pred HHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999999888888887767778 78888888899899999999999999999999999999999999999999999
Q ss_pred hhccCCCCcceeeeEe
Q 019502 323 ASRCLYNGLLVTLRIK 338 (340)
Q Consensus 323 ~~~~~~~~P~~a~~~~ 338 (340)
+|+||+++|++|++++
T Consensus 323 ~~v~~~~tP~~Ai~~~ 338 (473)
T TIGR00905 323 GRVNKNGAPSVALLLT 338 (473)
T ss_pred HhhCccCCCHHHHHHH
Confidence 9999889999998764
No 8
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=4.3e-47 Score=365.97 Aligned_cols=322 Identities=18% Similarity=0.210 Sum_probs=275.6
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhh-hcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHH
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVK-AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~-~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 91 (340)
+++++|+++.+|+++++++.++| |+|..++... ..+||. .+++|+++++. .++.+++|+|+++++|++||.|.|++
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~~ 100 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYSY 100 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeHH
Confidence 45689999999999999999999 9999987654 347887 47899999884 99999999999999999999999999
Q ss_pred hhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchh----h-------h-hh--hhHHHHHHHHHHHHHHHHHhcc
Q 019502 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI----F-------N-LL--IARIPALLGITGALTYLNYRGL 157 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~-~~--~~~~~~~~~~~~~~~~~~~~g~ 157 (340)
+.+||..||+.||.+++.|....+..+...++|+..+++. . . +. ....+.+++++++.+.+|++|+
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 9999999999999999999999999998888888765431 0 0 10 1123445677778889999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHhccccCCCcccc------ccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCC
Q 019502 158 HIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENP 228 (340)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p 228 (340)
|..+|++.+...+++..++++++.++.+.+++++... +..+.++.+.+ ..++|+|.|+|..++++||+|||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP 260 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP 260 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence 9999999999999999988888888877666665521 12234444444 46789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019502 229 SKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (340)
Q Consensus 229 ~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (340)
+|++||+++.++.+.+++|++..++.....|+++++ .++|+....+..+.++...++.+..+.+.+++.++.+.+.+|+
T Consensus 261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~-~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLD-PDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhC-cCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887765 4568888888777788889999999999999999999999999
Q ss_pred HHHhhhcCCchHHHhhcc-CCCCcceeeeEe
Q 019502 309 LLGMSEMGMLPAIFASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 309 l~~~a~d~~lP~~~~~~~-~~~~P~~a~~~~ 338 (340)
+|+|||||.+|++|+|+| |+++|++|++++
T Consensus 340 l~amarDGlLP~~fakv~~r~~tP~~Ail~~ 370 (557)
T TIGR00906 340 IYAMARDGLLFKWLAQINSKTKTPINATVVS 370 (557)
T ss_pred HHHHHcCCCccHHHhccCCCCCCcHHHHHHH
Confidence 999999999999999999 799999998653
No 9
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-46 Score=356.06 Aligned_cols=318 Identities=17% Similarity=0.184 Sum_probs=270.5
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
+++||+++.++..++++++++| |+|..++.....+||. .+++|++++++ .++.+++++|+++++|++||.|+|++|.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~-~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPG-IILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3589999999999999999999 9998888776658885 57899999985 9999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+||..|+.+||.+++.+....+.+....+++++.++|. .+.+....+++++.+.+|++|+|..++++.+...+++.
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~ 161 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVI 161 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999887763 33455567777889999999999999999999999988
Q ss_pred HHHHHHHHHhcc---c--cC----CCccc-cccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHH
Q 019502 174 PFVVMGILSIPR---I--KP----RRWLV-VDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (340)
Q Consensus 174 ~l~~~~i~~~~~---~--~~----~~~~~-~~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~ 240 (340)
.++++++.++.. . ++ .++.+ .++.+.++.+ .+...+|+|.|+|...+++||+|||+|++||++..+.
T Consensus 162 ~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~ 241 (456)
T PRK10238 162 AVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVI 241 (456)
T ss_pred HHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 776655543321 1 11 11111 1111333443 3346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH
Q 019502 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA 320 (340)
Q Consensus 241 ~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 320 (340)
....+.|+..........|++++..+..|+.+..++.+.++...++.+..+.+.+++.++.+.+.||++|+|||||.+|+
T Consensus 242 ~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~ 321 (456)
T PRK10238 242 YRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPK 321 (456)
T ss_pred HHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 99999999988887777888887767789999888888888888999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcceeeeEe
Q 019502 321 IFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 321 ~~~~~~~~~~P~~a~~~~ 338 (340)
+|+|+||+++|++|++++
T Consensus 322 ~f~kv~~~~~P~~Ail~~ 339 (456)
T PRK10238 322 ALASVDKRGVPVNTILVS 339 (456)
T ss_pred HHHhhCcCCCcHHHHHHH
Confidence 999999999999998764
No 10
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=4e-46 Score=352.94 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=265.2
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHH
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGG-GPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 91 (340)
+++++|+++++++++++++.++| |+|..+..+...+ ++...+++|++++++ .++.+++++|+++++|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 45689999999999999999999 8998888754334 444567889998885 99999999999999999999999999
Q ss_pred hhhCchhHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHH
Q 019502 92 SAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (340)
+.+||..|+..+|..+ ..+....+..+....+|+....|. .+.....+.++++.+.+.+|++|+|..+|+|.+....
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999744 455666777778888888766653 1223344556667778899999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCcccccc---Cccc-hHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHH
Q 019502 171 SLCPFVVMGILSIPRIKPRRWLVVDF---KKVD-WRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (340)
Q Consensus 171 ~~~~l~~~~i~~~~~~~~~~~~~~~~---~~~~-~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~ 243 (340)
+++.++++++.++...+++++.+... +..+ +.. .+...+|+|.|+|...+++||+|||+||+||+++.+..++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 99888777777665444444332111 1112 332 3456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccccchHHHHHHHH--cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHH
Q 019502 244 VSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI--GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (340)
Q Consensus 244 ~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~ 321 (340)
+++|++...+.....+++++.+++.|+.+..+.. .+++...++.+..+++.+++.++.+.+.+|++++++|||.+|++
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999999999988888888777778888888764 56677777888888999999999999999999999999999999
Q ss_pred Hhhcc-CCCCcceeeeEe
Q 019502 322 FASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 322 ~~~~~-~~~~P~~a~~~~ 338 (340)
|+|+| |+|+|++|++++
T Consensus 320 ~~~v~~~~~tP~~a~l~~ 337 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQ 337 (445)
T ss_pred HHHhCCCCCCCHHHHHHH
Confidence 99999 799999998764
No 11
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.2e-45 Score=346.05 Aligned_cols=312 Identities=19% Similarity=0.197 Sum_probs=252.6
Q ss_pred ccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhH
Q 019502 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (340)
Q Consensus 21 l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g 99 (340)
+++++.+++.+++++| |+|..|+.....+||. .+++|++++++ .++.+++++|+++++|++||.|.|++|.+||+.|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~-~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN-SLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 9999999887768885 47899999985 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHH
Q 019502 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (340)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 179 (340)
+..+|.++..+....+.......+++...+|. +.++...+.++++++.+++|++|+|..+|++.+...+.+..+....
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~ 156 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW--SSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIW 156 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887766665555566777766653 2344556667778889999999999999999987755443332221
Q ss_pred HHHhccccCCCccccccCccchHHH---HHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019502 180 ILSIPRIKPRRWLVVDFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (340)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~ 256 (340)
. ..+.+++++...+..+.+|.+. +...+|+|.|+|..++++||+|||+||+||+++.+..+..++|++...+...
T Consensus 157 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~ 234 (410)
T PRK11021 157 W--AGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLH 234 (410)
T ss_pred H--HcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1122223331111123455443 4567899999999999999999999999999999999999999999988776
Q ss_pred ccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCCCcceeee
Q 019502 257 GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLR 336 (340)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~P~~a~~ 336 (340)
..+.++...++.|..+..++..|++...++.+..+++.+++.++++.+.+|++++|+|||.+|++|+|+||+++|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail 314 (410)
T PRK11021 235 FPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALN 314 (410)
T ss_pred cCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHH
Confidence 66555544455677777888777777778888889999999999999999999999999999999999999999999886
Q ss_pred Ee
Q 019502 337 IK 338 (340)
Q Consensus 337 ~~ 338 (340)
++
T Consensus 315 ~~ 316 (410)
T PRK11021 315 AV 316 (410)
T ss_pred HH
Confidence 53
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.2e-45 Score=350.24 Aligned_cols=319 Identities=19% Similarity=0.187 Sum_probs=267.6
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
+.+++|+++.+|+.+++++.++| |+|..+......+||.. +++|++.+++ .++.+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~-~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAA-LLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHH-HHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45689999999999999999999 99998876655488865 6899998885 899999999999999999999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+||+.|++++|.+|+++....+.+....+++++.++|. .+.+...++++++.+.+|++|+|..++++.+...+++
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999999999988888998887763 3455667888888999999999999999999999998
Q ss_pred HHHHHHHHHHhcc---ccCC----Ccccc----ccCccchH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH
Q 019502 173 CPFVVMGILSIPR---IKPR----RWLVV----DFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (340)
Q Consensus 173 ~~l~~~~i~~~~~---~~~~----~~~~~----~~~~~~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~ 238 (340)
+.++.+++.++.. .+++ ++.+. +..+.++. ..+...+|+|.|+|.+.+++||+|||+|++||++..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 8776666554321 1111 11111 11123333 344568899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccc-ccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 019502 239 AVVLVVSSYLIPLLAGTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (340)
Q Consensus 239 ~~~i~~i~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 317 (340)
+.....++|++.........|.++.+. +..|..+..+..++++...++.+..+++.+++.++.+.+.+|++++|||||.
T Consensus 241 ~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999998888777777665432 2347877887777788888999999999999999999999999999999999
Q ss_pred chHHHhhccCCCCcceeeeEe
Q 019502 318 LPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 318 lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+|++|+|+||+++|++|++++
T Consensus 321 lP~~~~~v~~~~~P~~Ail~~ 341 (452)
T TIGR01773 321 APRVFMKLNKKGVPVQAVLAS 341 (452)
T ss_pred cCHHHHhhCCCCCcHHHHHHH
Confidence 999999999999999998653
No 13
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.3e-45 Score=349.69 Aligned_cols=319 Identities=15% Similarity=0.126 Sum_probs=271.5
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
++++||+++.++..++++++++| |+|..++.....+||. .+++|++++++ .++++++++|+++++|++||.|+|++|
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~-~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44689999999999999999999 9998777665558985 57999999884 899999999999999999999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+||..|+.+||.+|+.|....+.+....+.+++.++|. .+.+....+++++.+.+|++|+|..++++.+...+++
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki 158 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----MAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKV 158 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888888888888773 2344555667788899999999999999999999988
Q ss_pred HHHHHHHHHHhcc----cc-------CCCccccc-cCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH
Q 019502 173 CPFVVMGILSIPR----IK-------PRRWLVVD-FKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (340)
Q Consensus 173 ~~l~~~~i~~~~~----~~-------~~~~~~~~-~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~ 237 (340)
..++++++.++.. .. .+++.+.+ ..+.+|.+ .+..++|+|.|+|...+.+||+|||+|++||++.
T Consensus 159 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~ 238 (461)
T PRK10746 159 TTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVG 238 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHH
Confidence 7776666544321 11 11221111 11334444 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 019502 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (340)
Q Consensus 238 ~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 317 (340)
.+.....++|++..++.....|+++.+.++.|+.+..++.+.+....++.+..+.+.+++.++.+++.||++++|||||.
T Consensus 239 ~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 239 KVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998877789999988888888888999999999999999999999999999999999
Q ss_pred chHHHhhccCCCCcceeeeEe
Q 019502 318 LPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 318 lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+|++|+|+||+++|++|++++
T Consensus 319 lP~~~~~~~~~g~P~~al~~~ 339 (461)
T PRK10746 319 LPAAMAKVSRHGVPVAGVAVS 339 (461)
T ss_pred cCHHHHHhCCCCCcHHHHHHH
Confidence 999999999999999998653
No 14
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.7e-45 Score=351.91 Aligned_cols=320 Identities=18% Similarity=0.134 Sum_probs=261.3
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
.++++|+++.++++++++++++| |+|..++.....+||...+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 35689999999999999999999 9999998776558986568999999985 999999999999999999999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+||..|+..||.+++.+....+........++..++|. .+.+....+++.+.+.+|++|+|..++++.+....++
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki 164 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV 164 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999988777666555555556655552 2233445666777889999999999999999999888
Q ss_pred HHHHHHHHHHhcc------cc----CCCcccccc-CccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH
Q 019502 173 CPFVVMGILSIPR------IK----PRRWLVVDF-KKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (340)
Q Consensus 173 ~~l~~~~i~~~~~------~~----~~~~~~~~~-~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~ 238 (340)
..++.+++.++.. .+ .+++.+.+. .+.++...+ ...+|+|.|+|..++++||+|||+|++||++..
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~ 244 (489)
T PRK10836 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQ 244 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7766655544322 11 112221111 122444433 345799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcc--------cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019502 239 AVVLVVSSYLIPLLAGTGGLTSLSSE--------WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (340)
Q Consensus 239 ~~~i~~i~y~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 310 (340)
+...+.++|++...+....+|.++.+ ....|+....+..+.++...++.+..+++.+++.++.+.+.||++|
T Consensus 245 ~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~ 324 (489)
T PRK10836 245 VFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLY 324 (489)
T ss_pred HHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888865421 1246788888887777788899999999999999999999999999
Q ss_pred HhhhcCCchHHHhhccCCCCcceeeeEe
Q 019502 311 GMSEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 311 ~~a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+|||||.+|++|+|+||+++|++|++++
T Consensus 325 a~Ardg~lP~~~~kv~~~~~P~~All~~ 352 (489)
T PRK10836 325 TLACDGKAPRIFAKLSRGGVPRNALYAT 352 (489)
T ss_pred HHHcCCCcCHHHHhhCCCCCcHHHHHHH
Confidence 9999999999999999999999998754
No 15
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.7e-45 Score=350.31 Aligned_cols=318 Identities=23% Similarity=0.256 Sum_probs=268.1
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHHhhhCc
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAFGP 96 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~~G~ 96 (340)
||+++++++++.+++++| |+|..|..+...+||...+++|++.++. .++.+++++|+++++|++ ||.|+|++|.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 789999999999999999 9999998877667887668899999885 899999999999999997 5999999999999
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 97 FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 97 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
+.|++.+|.+|++++............++..++|.+. ++.+......+++++.+++|++|+|..+++|.+...+++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776666666677777776542 22344555677778899999999999999999999999998
Q ss_pred HHHHHHHHhccccCCCcccc----cc----Ccc---chHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKPRRWLVV----DF----KKV---DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (340)
Q Consensus 175 l~~~~i~~~~~~~~~~~~~~----~~----~~~---~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~ 243 (340)
++++++.++...+++++.+. .. .+. ++...+...+|+|.|+|.+.+++||.|| +||+||++..+..+.
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 88877766654443322211 00 011 1223345678999999999999999999 699999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccccch-HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHH
Q 019502 244 VSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (340)
Q Consensus 244 ~i~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 322 (340)
.++|++...+....++++++++.++| .....++..+++...++.+.++++.+++.++++.+.+|++++|||||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999998888877655555 77788888899999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcceeeeEe
Q 019502 323 ASRCLYNGLLVTLRIK 338 (340)
Q Consensus 323 ~~~~~~~~P~~a~~~~ 338 (340)
+|+||+++|+++++++
T Consensus 319 ~k~~~~~tP~~al~~~ 334 (468)
T TIGR03810 319 GKENANGAPTNALWLT 334 (468)
T ss_pred HhhCCCCCCHHHHHHH
Confidence 9999999999998754
No 16
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3.3e-45 Score=346.54 Aligned_cols=320 Identities=17% Similarity=0.208 Sum_probs=262.9
Q ss_pred cccccCCcccchhHHHHhhhhhcccccCc-hhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHH
Q 019502 13 KAAKTSPKLTVLPLIALIFYEVSGGPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~ggi~~~-~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 91 (340)
++++++|+++.++.++++++.++||.+.. +..+.. +||....+++++.++ +.++.+++++|+++++|++||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~-~G~~~~~~~~~i~~~-~~~~~a~~~aEl~s~~P~~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQ-GGWGGFVVATLLVAT-MYLTFCFSLAELSTMIPTAGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhhccchhHhhHHHH-hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35678999999999999999998865443 445555 788776788888777 599999999999999999999999999
Q ss_pred hhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
|.+||..|+..+|.+++.+....+..+...++|++.++|.. +.+...++++++.+++|++|+|..++++.+...++
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~----~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG----PGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999998888732 34455677788889999999999999999999888
Q ss_pred HHHHHHHHHHHhccccCCCcccc------ccCccchHHH---HHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHH
Q 019502 172 LCPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (340)
Q Consensus 172 ~~~l~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i 242 (340)
++.++++......+.++.++.+. ...+.++.+. +...+|+|.|+|.+.+++||+|||+||+||+++.+..+
T Consensus 155 ~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~ 234 (442)
T TIGR00908 155 IIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILT 234 (442)
T ss_pred HHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHH
Confidence 87666554444333333232221 1112334333 34578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH
Q 019502 243 VVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA 320 (340)
Q Consensus 243 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 320 (340)
..++|+....+.....+++++.++++|+.+..+...+ .+...++.+..+++.+++.++.+.+.+|++++|||||.+|+
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~ 314 (442)
T TIGR00908 235 LLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPE 314 (442)
T ss_pred HHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 9999998877776666766676667788888887754 45667777778888999999999999999999999999999
Q ss_pred HHhhccCCCCcceeeeEe
Q 019502 321 IFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 321 ~~~~~~~~~~P~~a~~~~ 338 (340)
+|+|+||+++|++|++++
T Consensus 315 ~~~~~~~~~~P~~Ail~~ 332 (442)
T TIGR00908 315 SLSKVNRKKAPVLAIVVP 332 (442)
T ss_pred HHHHhCCCCCcHHHHHHH
Confidence 999999999999998754
No 17
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=3e-45 Score=345.83 Aligned_cols=320 Identities=23% Similarity=0.251 Sum_probs=274.1
Q ss_pred cCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhC
Q 019502 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G 95 (340)
++|+++.+|.+++.++.++| |++..+......+|+.. +++|++.++. .++.+++++|+++++|++||.|+|++|.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~-~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAV-ILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHH-HHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 47999999999999999999 89988887665577764 6888888884 889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhH------------HHHHHHHHHHHHHHHHhcchhHHHH
Q 019502 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR------------IPALLGITGALTYLNYRGLHIVGFS 163 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (340)
|+.|++.+|.+++++....+..+...++++..+++....+.+. .+..++++++.+++|++|+|..+|+
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999999999999999999999988776521111111 1235678888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCccccccC-ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHH
Q 019502 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFK-KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (340)
Q Consensus 164 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i 242 (340)
+.+...+++..++++++.++.+.+.+++.+.... ..++...+...+|+|.|+|...+++||+|||+|++||+++.+..+
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~ 238 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIV 238 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHH
Confidence 9999999998887777777665555555443211 112333445678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHH
Q 019502 243 VVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (340)
Q Consensus 243 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~ 322 (340)
..++|++..+......+.+++.+++.|+....++..+++...++.+..+++.+++.++.+.+.+|++++++|||.+|+++
T Consensus 239 ~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~ 318 (429)
T TIGR00909 239 VTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSL 318 (429)
T ss_pred HHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 99999999999988888887777778888888888899999999999999999999999999999999999999999999
Q ss_pred hhcc-CCCCcceeeeEe
Q 019502 323 ASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 323 ~~~~-~~~~P~~a~~~~ 338 (340)
+|+| |+++|++|++++
T Consensus 319 ~~~~~~~~~P~~a~~~~ 335 (429)
T TIGR00909 319 SKVHPKTGTPHMSIIIF 335 (429)
T ss_pred HHcCCCCCCcHHHHHHH
Confidence 9999 789999987653
No 18
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=6.7e-45 Score=345.40 Aligned_cols=319 Identities=16% Similarity=0.193 Sum_probs=265.1
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
+++++|+++.+++++++++.++| |+|..++.....+||.. +++|++++++ .++.+++++|+++++|++||.|+|++|
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~-~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV-LLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34689999999999999999999 99988887655588865 8999998885 999999999999999999999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+||..|+++||.+++.+....+......+.+...++|. .+.+...++++++.+.+|++|+|..++++.+...+++
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~ 157 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT----VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKV 157 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 999999999999999999887777777788888877763 2333445566778899999999999999999999988
Q ss_pred HHHHHHHHHHhc----c---c-cCCCccc----cccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH
Q 019502 173 CPFVVMGILSIP----R---I-KPRRWLV----VDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (340)
Q Consensus 173 ~~l~~~~i~~~~----~---~-~~~~~~~----~~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~ 237 (340)
..++++++.++. . . ++.+..+ ....+.++.+ .+..++|+|.|+|...+++||+|||+|++||+++
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 877766554421 0 0 1111111 1111233433 3356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 019502 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (340)
Q Consensus 238 ~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 317 (340)
.+.....++|++..+......|++++.....|+....+..+.++...++.+..+.+.+++.++.+.+.+|++++|||||.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 317 (457)
T PRK10580 238 SVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998888888887766678888777777777888888888999999999999999999999999999
Q ss_pred chHHHhhccCCCCcceeeeEe
Q 019502 318 LPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 318 lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+|++|+|+||+++|++|++++
T Consensus 318 lP~~~~kv~~~~~P~~Ai~~~ 338 (457)
T PRK10580 318 APKIFSKTSRRGIPWVTVLVM 338 (457)
T ss_pred cCHHHHhhCCCCCcHHHHHHH
Confidence 999999999999999998654
No 19
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2e-44 Score=342.81 Aligned_cols=319 Identities=17% Similarity=0.190 Sum_probs=270.1
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
+++++|+++.+++..++++.++| |+|..++.....+||. .+++|++++++ .++.+++++|+++..|..|+.|.|++|
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~-~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS-IIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 45689999999999999999999 9998887665558885 57899998885 899999999999999999999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+||..||++||.+++.+....+..+.....++..++|.. +.+..+++++.+.+.+|++|.|..+++|.+...+++
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl 168 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKI 168 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777777777888888777743 233445667778899999999999999999999998
Q ss_pred HHHHHHHHHHhccc-----cCC----Ccccc----ccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHH
Q 019502 173 CPFVVMGILSIPRI-----KPR----RWLVV----DFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (340)
Q Consensus 173 ~~l~~~~i~~~~~~-----~~~----~~~~~----~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~ 236 (340)
..++.+++.++... +++ ++.+. +..+.+|.+ .+...+|+|.|+|.+.+++||+|||+|++||++
T Consensus 169 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai 248 (469)
T PRK11049 169 VAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAI 248 (469)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHH
Confidence 88887777665421 111 12111 111234433 345678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 237 ~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
..+.....++|++.........|++++..+++|..+..+..++++...++.+..+++.+++.++.+.+.+|++++|||||
T Consensus 249 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 328 (469)
T PRK11049 249 NSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEG 328 (469)
T ss_pred HHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888899999999999888888888876778998888888888889999999999999999999999999999999999
Q ss_pred CchHHHhhccCCCCcceeeeEe
Q 019502 317 MLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 317 ~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
.+|++|+|+||+++|++|++++
T Consensus 329 ~lP~~~~kv~~~~tP~~Ai~~~ 350 (469)
T PRK11049 329 VAPKAFAKLSKRAVPAKGLTFS 350 (469)
T ss_pred CCCHHHHhhCCCCCCHHHHHHH
Confidence 9999999999889999998653
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-45 Score=332.21 Aligned_cols=324 Identities=24% Similarity=0.286 Sum_probs=279.9
Q ss_pred cccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH
Q 019502 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPL-LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 90 (340)
++.+++||++.+.++.+.+++++| |+|..|.++...+|+. .+++.|++.++ .+++-++||+||++.+|++||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi-~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGI-ISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCcchhhH
Confidence 456789999999999999999999 9999999886655554 44555666666 59999999999999999999999999
Q ss_pred HhhhCchhHHHHHHHHHHHH-hhhHHHHHHHHHHH-HHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 91 SSAFGPFWGFQEGFWKWLSG-VLDNALYPVLFLDY-LKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
.+++||..+|...|.-++.. ....+..+..+++| ++..+|... ++...-.++.+++.+++++|+..+|+..|+|.++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~f 164 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVF 164 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999866654 45569999999999 777787332 4456667778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc---cCCCcccc-----ccCccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHH
Q 019502 168 LVFSLCPFVVMGILSIPRI---KPRRWLVV-----DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~ 239 (340)
+..+++++.++++.|+... +.+|+... ..+..++...+-..+|+|.|||...+.+||+|||+||+|||+.++
T Consensus 165 t~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~is 244 (479)
T KOG1287|consen 165 TIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILIS 244 (479)
T ss_pred HHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHh
Confidence 9999999999999888643 22232221 122334666677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCch
Q 019502 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP 319 (340)
Q Consensus 240 ~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 319 (340)
+.++++.|++..++...++++|++.+++....+..++..|.+. +++.+.+.++++++.++.+++.||.++++||+|++|
T Consensus 245 i~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP 323 (479)
T KOG1287|consen 245 IPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP 323 (479)
T ss_pred hHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999998888888999999999977 999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCcceeeeEe
Q 019502 320 AIFASRCL-YNGLLVTLRIK 338 (340)
Q Consensus 320 ~~~~~~~~-~~~P~~a~~~~ 338 (340)
+.++++|+ +.+|..+++++
T Consensus 324 ~~~s~i~~~~~TP~~allf~ 343 (479)
T KOG1287|consen 324 AFFSMISVRRFTPRPALLFS 343 (479)
T ss_pred HHHHhhcCCCCCChHHHHHH
Confidence 99999995 55999887654
No 21
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=5.8e-44 Score=342.73 Aligned_cols=324 Identities=20% Similarity=0.224 Sum_probs=259.0
Q ss_pred cccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH
Q 019502 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPL-LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 90 (340)
++++++|+++.++++++++++++| |+|..+......+|+. ..+++|+++++ +.++.+++++|+++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i-~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGI-FSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 345689999999999999999999 9998888765546653 34578888887 59999999999999999999999999
Q ss_pred HhhhCchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHH-Hhchhhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 91 SSAFGPFWGFQEGFWKWLS-GVLDNALYPVLFLDYLK-HSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
+|.+||..|++.+|..+.. +....+..+...++++. ..++... +.+...+++++++++.+++|++|+|..+|++.+.
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~ 194 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIF 194 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999987753 34555666666666653 3454322 2344556677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccCC---Ccccc---cc---CccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH
Q 019502 168 LVFSLCPFVVMGILSIPRIKPR---RWLVV---DF---KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~~~~~~---~~~~~---~~---~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~ 238 (340)
..++++.++++++.++.....+ +..+. .. +..++...+...+|+|.|+|.+.+++||+|||+|++||+++.
T Consensus 195 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~ 274 (501)
T TIGR00911 195 TACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIII 274 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHH
Confidence 9999988887777665432211 11111 01 112233345678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCc
Q 019502 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (340)
Q Consensus 239 ~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 318 (340)
+..+++++|++..++.....+++++.+++.+.....+...+ ....++.+...++.+++.++.+.+.+|+++++||||.+
T Consensus 275 s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~l 353 (501)
T TIGR00911 275 SMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHL 353 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999998888887766554444455555555 56677888889999999999999999999999999999
Q ss_pred hHHHhhcc-CCCCcceeeeEe
Q 019502 319 PAIFASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 319 P~~~~~~~-~~~~P~~a~~~~ 338 (340)
|++++|+| |+++|+++++++
T Consensus 354 P~~~~~v~~~~~~P~~all~~ 374 (501)
T TIGR00911 354 PSLLSMIHVKRLTPLPSLLIV 374 (501)
T ss_pred cHHHHHhcCCCCCCHHHHHHH
Confidence 99999999 589999988653
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.5e-43 Score=338.46 Aligned_cols=316 Identities=18% Similarity=0.152 Sum_probs=255.9
Q ss_pred CCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHHhhhC
Q 019502 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAFG 95 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~~G 95 (340)
||+++.+++.+++++.++| |+|..+......+||...+++|++.+++ .++.+++++|+++++|++ ||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5899999999999999999 9998877665558886668899999985 999999999999999965 567789999999
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHH
Q 019502 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPF 175 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 175 (340)
|..|+.+||.+|++++...+......+.++..+.+.. +......+++++.+++|++|+|..++++.+...+++..+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV----NPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAI 155 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888665522 112222355667889999999999999999998888777
Q ss_pred HHHHHHHhcccc--C---C-----Ccccc-ccCcc----chH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH
Q 019502 176 VVMGILSIPRIK--P---R-----RWLVV-DFKKV----DWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (340)
Q Consensus 176 ~~~~i~~~~~~~--~---~-----~~~~~-~~~~~----~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~ 237 (340)
+.+++.++.... . . ++.+. ...+. .+. ..+...+|+|.|+|...+++||+|||+|++||+++
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 666555443211 0 0 11110 11111 133 33456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC--ccc-------ccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019502 238 GAVVLVVSSYLIPLLAGTGGLTSLS--SEW-------SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (340)
Q Consensus 238 ~~~~i~~i~y~l~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (340)
.+..++.++|++..++.....|+++ +.+ ...|+....+..+.++...++.+..+++.+++.++.+.+.+|+
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999888777777654 221 1257777677777788889999999999999999999999999
Q ss_pred HHHhhhcCCchHHHhhccCCCCcceeeeEe
Q 019502 309 LLGMSEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 309 l~~~a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
++++||||.+|++|+|+||+++|++|++++
T Consensus 316 l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~ 345 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDRRGVPYVAVIVS 345 (478)
T ss_pred HHHHHhCCcccHHHHhhCCCCCCHHHHHHH
Confidence 999999999999999999999999998754
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=5e-43 Score=331.07 Aligned_cols=304 Identities=19% Similarity=0.175 Sum_probs=255.2
Q ss_pred Hhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHHH
Q 019502 29 LIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKW 107 (340)
Q Consensus 29 l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~ 107 (340)
+++++++| |+|..++...+.+||. .+++|++++++ .++.+++++|+++++|++||.|.|++|.+||..||..+|.+|
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 56788999 9998888665558886 57999999985 899999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhcccc
Q 019502 108 LSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIK 187 (340)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 187 (340)
+.++...+.++.....+++.+.| ..+......+++++.+.+|++|+|..+++|.+...++++.++.+++.++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVP----GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988888777777776655 33556677888889999999999999999999999999888777766554221
Q ss_pred ---C----CCcccc----ccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 188 ---P----RRWLVV----DFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 188 ---~----~~~~~~----~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
+ .++.+. +..+.++.+ .+..++|+|.|+|...+.+||+|||+|++||++..+.....++|++..++
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 156 GFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred CCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111110 111334443 34567899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccc-cchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCCCcc
Q 019502 254 GTGGLTSLSSEWS-DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLL 332 (340)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~P~ 332 (340)
.....|+++.+.+ ..+.....+..++++...++.+..+++.+++.++++.+.+|++|++||||.+|++|+|+||+++|+
T Consensus 236 ~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~ 315 (446)
T PRK10197 236 VVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPY 315 (446)
T ss_pred HheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcH
Confidence 8888888764422 345667777888888889999999999999999999999999999999999999999999999999
Q ss_pred eeeeEe
Q 019502 333 VTLRIK 338 (340)
Q Consensus 333 ~a~~~~ 338 (340)
+|++++
T Consensus 316 ~Ail~~ 321 (446)
T PRK10197 316 VAVLLS 321 (446)
T ss_pred HHHHHH
Confidence 998764
No 24
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=3.4e-42 Score=328.24 Aligned_cols=323 Identities=15% Similarity=0.069 Sum_probs=244.6
Q ss_pred cccccCCcccchhHHHHhhhhh-cc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH
Q 019502 13 KAAKTSPKLTVLPLIALIFYEV-SG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~-~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 90 (340)
.++++||+++.++.++++++.+ ++ |++..+......+||. .+++|+++++. .++.+++++|+++++|++||.|+|+
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~-~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~~~ 84 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA-FFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQWS 84 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 4567999999999999999975 56 8888877665558885 58999998884 9999999999999999999999999
Q ss_pred HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhch---------hhh---hhhhHHHHHHHHHHHHHHHHHhcch
Q 019502 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP---------IFN---LLIARIPALLGITGALTYLNYRGLH 158 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (340)
+|.+||+.|+++||.+++++....+........++..+.+ .+. ..++..+++++++++.+.+|++|+|
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999987766666655555433221 110 1134567777888889999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccccCCC---cccc-ccCccchHH----HHHHHHHhhhhHHhhhhhhhhccCCCC
Q 019502 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR---WLVV-DFKKVDWRG----YFNSMFWNLNYWDKASTLAGEVENPSK 230 (340)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~----~~~~~~~af~G~e~~~~~~~e~k~p~k 230 (340)
..++++.+...+++..++++++..+.+.+.+. +... .....++.. .....+|+|.|+|.+.+++||+|||+|
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r 244 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence 99999999999988777766655543332111 1111 111223322 223467999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019502 231 TFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS-SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (340)
Q Consensus 231 ~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 309 (340)
++||+++.+..+..+.|.+..+......++.+ ...++........+..++.....+....+++.+++.++...+.||++
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~ 324 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLM 324 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887777776665422 11111122233444444333345556678889999999999999999
Q ss_pred HHhhhcCCch--HHHhhcc-CCCCcceeeeE
Q 019502 310 LGMSEMGMLP--AIFASRC-LYNGLLVTLRI 337 (340)
Q Consensus 310 ~~~a~d~~lP--~~~~~~~-~~~~P~~a~~~ 337 (340)
|++||||.+| ++++|+| |+++|++|+++
T Consensus 325 ~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l 355 (475)
T TIGR03428 325 FSMARDGKLPASAQLSRVHPRTGTPILPSIV 355 (475)
T ss_pred HHHHhcCCCcchHHhcccCCCCCCcHHHHHH
Confidence 9999999999 5899999 68999998764
No 25
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=5e-41 Score=316.92 Aligned_cols=313 Identities=28% Similarity=0.458 Sum_probs=263.7
Q ss_pred ccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhH
Q 019502 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (340)
Q Consensus 21 l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g 99 (340)
+|+++.+++.++.++| |++..+ .... +|+.. +++|++.+++..++.+++|+|+++++|++||.|.|++|.+||+.|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~-~G~~~-~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAAS-AGPSA-ILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTC-TGCHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHH-HhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 5899999999999999 787776 4444 77764 677888777544899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhch-hhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH-HHHH
Q 019502 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLP-IFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL-CPFV 176 (340)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~l~ 176 (340)
++.+|.+++.+....+.......+++...+. ... ++++..+++++++++.+.+|++|.|..+|++.+...+++ ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~ 157 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLL 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999998888889999987764 332 346777888999999999999999999999999999999 5777
Q ss_pred HHHHHHhccccCCCccc-----cccCccch---HHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 019502 177 VMGILSIPRIKPRRWLV-----VDFKKVDW---RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (340)
Q Consensus 177 ~~~i~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~ 248 (340)
++++.++...+.+.... ....+.++ ...+...+|+|.|+|..++++||.|| ||+||+++.+..+..++|+
T Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~ 235 (426)
T PF13520_consen 158 VLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYI 235 (426)
T ss_dssp HHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred hheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHh
Confidence 77777776654432221 11112233 23345678999999999999999877 8999999999999999999
Q ss_pred HHHHHHHhccCCCCccccc---chHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhc
Q 019502 249 IPLLAGTGGLTSLSSEWSD---GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASR 325 (340)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 325 (340)
+...+.....|+++.+..+ ++.....+..++++...++.+..+++.+++.++.+.+.+|++++++|||.+|++++|+
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 315 (426)
T PF13520_consen 236 LFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKV 315 (426)
T ss_dssp HHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTT
T ss_pred hhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhc
Confidence 9999999999998765432 3688888888888999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeEe
Q 019502 326 CLYNGLLVTLRIK 338 (340)
Q Consensus 326 ~~~~~P~~a~~~~ 338 (340)
||+++|+++++++
T Consensus 316 ~k~~~P~~a~~~~ 328 (426)
T PF13520_consen 316 NKFGTPYNAIILV 328 (426)
T ss_dssp SSSSSCHHHHHHH
T ss_pred cccCCceeeehhh
Confidence 9999999998653
No 26
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=306.03 Aligned_cols=318 Identities=16% Similarity=0.197 Sum_probs=285.5
Q ss_pred ccccCCcccchhHHHHhhhhhcc-ccc-CchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHH
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~-~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 91 (340)
++.++|.++.++.-.++++..+| |.| +....++. +||+. +++++++|++ ...+.-..+|+....|++|+..+|++
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSv-lLaY~I~G~~-~f~iMRaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSV-LLAYLIAGIF-VFLIMRALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHH-HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 44689999999999999999999 877 44455666 99986 7999999985 88899999999999999999999999
Q ss_pred hhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
+.+||+.|+++||.||+.++....++....+.|++.++| ..|.|+.+++++.+...+|+.++|.++..+..+..+|
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP----~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP----DVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 4588888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc----c-CC------Ccccc-ccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHH
Q 019502 172 LCPFVVMGILSIPRI----K-PR------RWLVV-DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (340)
Q Consensus 172 ~~~l~~~~i~~~~~~----~-~~------~~~~~-~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~ 236 (340)
++.++.+++.|+... + ++ |.... +.-|.++.+.+ ..++|+|.|.|.....+.|.|||+|.+|||+
T Consensus 161 V~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAi 240 (462)
T COG1113 161 VAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAI 240 (462)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHH
Confidence 999888887765321 1 11 11111 12356666644 5688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 237 ~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
-....-..++|+...+++....|+++++.+++|+.+.++..+-++...++++.++.+.+++.|+.+++.+|++|.+|+||
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g 320 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQG 320 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcC
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhccCCCCcceeeeEe
Q 019502 317 MLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 317 ~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
..|+.++|+||+++|+++++++
T Consensus 321 ~APk~~~klsk~gVP~~ai~~s 342 (462)
T COG1113 321 DAPKAFAKLSKRGVPVNAILLS 342 (462)
T ss_pred cccHhHhhccccCCCHHHHHHH
Confidence 9999999999999999998654
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=7e-41 Score=320.21 Aligned_cols=324 Identities=17% Similarity=0.176 Sum_probs=245.7
Q ss_pred cccccCCcccchhHHHHhhhhhcc--cccCchh-hhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhh
Q 019502 13 KAAKTSPKLTVLPLIALIFYEVSG--GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~g--gi~~~~~-~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 89 (340)
+++++||+++.++.++++++.+.. |++.... .+.. +||...+++|++++++ .++.+++++|+++++|++||.|+|
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~~ 83 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYFW 83 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHHH
Confidence 355789999999999999996532 4554433 3344 7886668899999985 999999999999999999999999
Q ss_pred HHhhhC----chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhch----h--hh-hhhhHHHHHHHHHHHHHHHHHhcch
Q 019502 90 ISSAFG----PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP----I--FN-LLIARIPALLGITGALTYLNYRGLH 158 (340)
Q Consensus 90 ~~~~~G----~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (340)
++|.+| |..+|++||.+++.+....+......++++...+. . +. +++....+.++++++.+.+|++|.|
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k 163 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTK 163 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHh
Confidence 999876 67799999999999999888888887777765431 1 11 2344566667778889999999999
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccccC----CC-----ccccc--cCccchHH--HHHHHHHhhhhHHhhhhhhhhc
Q 019502 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIKP----RR-----WLVVD--FKKVDWRG--YFNSMFWNLNYWDKASTLAGEV 225 (340)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~----~~-----~~~~~--~~~~~~~~--~~~~~~~af~G~e~~~~~~~e~ 225 (340)
..++++.+...++++.++++++..+...++ .+ +.+.. +.+.++.. .+....|+|.|+|.+.+++||+
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 164 WLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 999999998888877666544443332211 11 11111 11222322 2234679999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcccc--cchHHHHHHHHcch-HHHHHHHHHHHHHHHHHHHHH
Q 019502 226 ENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS-LSSEWS--DGYFAEVGMLIGGF-WLKWWIQAASAMSNLGLFEAE 301 (340)
Q Consensus 226 k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (340)
|||+|++||++..++.+..+++++..+......++ ++..++ ..|+.+.+....+. +...++.+..+++.+++.++.
T Consensus 244 knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 323 (482)
T TIGR00907 244 ENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITC 323 (482)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777665555554444432 222222 25888887776444 777788888899999999999
Q ss_pred hhhhhHHHHHhhhcCCch--HHHhhccC-CCCcceeeeEe
Q 019502 302 MSGDAFQLLGMSEMGMLP--AIFASRCL-YNGLLVTLRIK 338 (340)
Q Consensus 302 ~~~~sR~l~~~a~d~~lP--~~~~~~~~-~~~P~~a~~~~ 338 (340)
+.+.||+++++||||.+| ++|+|+|| +++|++|++++
T Consensus 324 ~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~ 363 (482)
T TIGR00907 324 MTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLS 363 (482)
T ss_pred HHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHH
Confidence 999999999999999999 99999996 59999998754
No 28
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-40 Score=305.86 Aligned_cols=318 Identities=19% Similarity=0.175 Sum_probs=277.7
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCch-hhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVE-DSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
++||+|..+++.++++|+.+| |.|.-. ..+++ +||...++++.+.+.+ ..++..+.+||+..+|.+|+..+|++|-
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhh
Confidence 589999999999999999999 887554 45566 9999999999999994 9999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
.+|-.||..||.||+.|....+.+...++..++.++|.. .+...+..++.++...+|..++|..+....++..+|++
T Consensus 119 vdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~---v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 119 VDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT---VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC---CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 999999999999999999999999999999999998632 35556667889999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc---CC------C-ccccccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHH
Q 019502 174 PFVVMGILSIPRIK---PR------R-WLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (340)
Q Consensus 174 ~l~~~~i~~~~~~~---~~------~-~~~~~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~ 240 (340)
.++.+++.++...- ++ + +...+.-+.++.++. ..+.|+|.|.|.....+.|.|||+|++|||+.-..
T Consensus 196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vf 275 (541)
T COG0833 196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVF 275 (541)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHH
Confidence 99988887765321 11 1 111111133444443 45679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--c------ccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502 241 VLVVSSYLIPLLAGTGGLTSLS--S------EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (340)
Q Consensus 241 ~i~~i~y~l~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 312 (340)
.-..++|++..+++...+|+++ + +...+|+....+..+-+..+.++++.++++.++..|+.+++.||++|+|
T Consensus 276 wRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sL 355 (541)
T COG0833 276 WRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSL 355 (541)
T ss_pred HHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 9999999999999999999877 1 1345699999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHhhccCCCCcceeeeEe
Q 019502 313 SEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 313 a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
|+||..||+|+|+||+|+|.+|++.+
T Consensus 356 A~~g~APk~f~~~~r~GvP~~al~vt 381 (541)
T COG0833 356 AKQGKAPKIFAKVDRRGVPLVALLVT 381 (541)
T ss_pred HhcCCCchHHHhhCCCCCchHHHHHH
Confidence 99999999999999999999998654
No 29
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-40 Score=314.25 Aligned_cols=324 Identities=23% Similarity=0.298 Sum_probs=273.6
Q ss_pred ccccccCCcccchh-HHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhh
Q 019502 12 QKAAKTSPKLTVLP-LIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (340)
Q Consensus 12 ~~~~~~~r~l~~~~-~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 89 (340)
+++++++|+++.++ ...+..+.++| |++..+......+ +.. .++|++.+++ ..+.+++++|+++++|++||.|.|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~-~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~ 81 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAA-ILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAY 81 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeee
Confidence 34567789999999 89999999999 8998888776534 433 4457777775 666799999999999999999999
Q ss_pred HHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchh---hhhh-hhHHHHHHHHHHHHHHHHHhcchhHHHHhH
Q 019502 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI---FNLL-IARIPALLGITGALTYLNYRGLHIVGFSAV 165 (340)
Q Consensus 90 ~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (340)
+++.+||+.++.++|.+++++....+.......+++...++. .... +....++.+++++.+.+|++|+|..++++.
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999988888873 2222 677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCccccc--c-CccchH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHH
Q 019502 166 SLLVFSLCPFVVMGILSIPRIKPRRWLVVD--F-KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~--~-~~~~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~ 239 (340)
+...++++.++.+++.++.+.+.++..... . ....+. ..+...+|+|.|+|..++++||+|||+|++||+++.+
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~ 241 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILS 241 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHH
Confidence 999999999999888877766544321111 1 111222 2334678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccc-cc-chHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCC
Q 019502 240 VVLVVSSYLIPLLAGTGGLTSLSSEW-SD-GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (340)
Q Consensus 240 ~~i~~i~y~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 317 (340)
..+..++|++...+.....+++++.. .. .|..+..+...+.+...++.+..+++.+++.+++..+.+|.+++|+|||.
T Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 321 (466)
T COG0531 242 LLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGL 321 (466)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998754332 22 68888888888889999999999999999999999999999999999999
Q ss_pred chHHHhhccC-CCCcceeeeEe
Q 019502 318 LPAIFASRCL-YNGLLVTLRIK 338 (340)
Q Consensus 318 lP~~~~~~~~-~~~P~~a~~~~ 338 (340)
+|++++|+|+ +++|+++++++
T Consensus 322 lP~~~~~~~~~~~~P~~a~~~~ 343 (466)
T COG0531 322 LPKFFAKVNPKGRTPVIALILT 343 (466)
T ss_pred ccHHHHHhCCCCCCCHHHHHHH
Confidence 9999999995 67999998754
No 30
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-41 Score=316.64 Aligned_cols=323 Identities=19% Similarity=0.210 Sum_probs=262.4
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHH
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWIS 91 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~ 91 (340)
+++++|+++++|+.+++++..+| |+|...+.....+||...++++++++. ..++.++|++|++.++|.. ||.|.|++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~-~~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGI-AALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHH-HHHHHHHHHHHHheecccccccceeeee
Confidence 35889999999999999999999 998776665444666667899999998 4999999999999999995 99999999
Q ss_pred hhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---------hhhh--hhhhHHHHHHHHHHHHHHHHHhcchhH
Q 019502 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL---------PIFN--LLIARIPALLGITGALTYLNYRGLHIV 160 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (340)
|..|+.+||..||.|++.|+...+.++++.+.+++.+. +..+ ...+.++..++++.++....+.+.|..
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 99999999999999999999999999999999999985 3221 123334443333344444444778888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccCCCcccc-------ccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCC
Q 019502 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV-------DFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSK 230 (340)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k 230 (340)
..+++++..+.++.+.+++..|..+.|..++... ...+.++.+ .+..++|+|.|+|.....+||.|||||
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 8888888888887777777777776665455431 122444444 445688999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--ccccc---chHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 019502 231 TFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS--SEWSD---GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGD 305 (340)
Q Consensus 231 ~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (340)
++|+++..++....++|++....+...+|+++ ++.+. .|+....+...-+.+..++++.++++..++.++.+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999987 55332 23332333333345556999999999999999999999
Q ss_pred hHHHHHhhhcCCchHHHhhccCCCCcceeeeE
Q 019502 306 AFQLLGMSEMGMLPAIFASRCLYNGLLVTLRI 337 (340)
Q Consensus 306 sR~l~~~a~d~~lP~~~~~~~~~~~P~~a~~~ 337 (340)
+|.+++||+||.+|++|+++||+++|++|++.
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v 375 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRRGVPLVAVLV 375 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCCCCchhHHHH
Confidence 99999999999999999999988999998764
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.1e-39 Score=309.18 Aligned_cols=316 Identities=22% Similarity=0.266 Sum_probs=235.2
Q ss_pred CcccchhHHHHhhhhhcccccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchh
Q 019502 19 PKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~ggi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 98 (340)
||++.++++.+.+..+.+ +...|.. +. .|+.. +++|++++++..++.+++++|+++++|++||.|.|++|++||+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~~~-a~-~G~~~-~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLPAE-AE-YGLSA-AFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARW 76 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcchHH-HH-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhH
Confidence 579999999998887755 2233333 33 67754 67788888765679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhch------hh-hhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHH-
Q 019502 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP------IF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF- 170 (340)
Q Consensus 99 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 170 (340)
|+..+|.+|+++.+..+.........+..+.+ .+ ++.+......++++++.+++|++|+|..++++++...+
T Consensus 77 gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 77 GFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999999999877665544333333332211 11 12334445566777788999999999999999876544
Q ss_pred HHHHHHHHHHHHhccc---cCC----CccccccCccchHHHH--HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHH
Q 019502 171 SLCPFVVMGILSIPRI---KPR----RWLVVDFKKVDWRGYF--NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (340)
Q Consensus 171 ~~~~l~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~--~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~ 241 (340)
++++++++++.++... ++. ++.+..++..++.... ..++|+|.|+|..+.++||+|||+|++||++..+..
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~ 236 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAAL 236 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHH
Confidence 3444444444443321 111 1111111111222222 345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccc---hHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCc
Q 019502 242 LVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (340)
Q Consensus 242 i~~i~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~l 318 (340)
+..++|++..++.....|+++...+.. +..+..+..+.++...++.+...++.+++.++++.+.+|++++++|||.+
T Consensus 237 ~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~l 316 (474)
T TIGR03813 237 GTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYL 316 (474)
T ss_pred HHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999898877653332 23444445456777788888888899999999999999999999999999
Q ss_pred hHHHhhccCCCCcceeeeEe
Q 019502 319 PAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 319 P~~~~~~~~~~~P~~a~~~~ 338 (340)
|++++|+||+++|+++++++
T Consensus 317 P~~~~kv~k~~~P~~a~~~~ 336 (474)
T TIGR03813 317 PTFFQKTNKNGMPIHIMFVQ 336 (474)
T ss_pred CHHHhccCCCCCcHHHHHHH
Confidence 99999999999999987654
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=9.8e-40 Score=328.03 Aligned_cols=323 Identities=15% Similarity=0.097 Sum_probs=257.7
Q ss_pred cccCCcccchhHHHHh-hhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCchhhhHH
Q 019502 15 AKTSPKLTVLPLIALI-FYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATS-FPENGGYVIWIS 91 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~-~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~-~p~~Gg~y~~~~ 91 (340)
++.+|++++++.+++- +.+++| ++|..++.+...+|....++.|++++++ .++.+++++|+++. +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3457899999999997 999999 9999988887658877667888888885 99999999999998 999999999999
Q ss_pred hhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhh------hhhHHHHHHHHHHHHHHHHHhcchhHHHHhH
Q 019502 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL------LIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (340)
Q Consensus 92 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (340)
|++||..|+..||.+++++.+..+.++.++++++..+++.... .....+++.+++++++++|++|+|..+|+|.
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~ 230 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQV 230 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999888753211 1123456788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccC-----------CCcc----ccccCcc-chHHHHHHHHHhhhhHHhhhhhhhhccCCC
Q 019502 166 SLLVFSLCPFVVMGILSIPRIKP-----------RRWL----VVDFKKV-DWRGYFNSMFWNLNYWDKASTLAGEVENPS 229 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i~~~~~~~~-----------~~~~----~~~~~~~-~~~~~~~~~~~af~G~e~~~~~~~e~k~p~ 229 (340)
++.+++++.++.+++.++..... +.+. +...... ++...+...+++|.|+|+..++++|+|||+
T Consensus 231 vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~ 310 (953)
T TIGR00930 231 LFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQ 310 (953)
T ss_pred HHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 99999888877766655432110 0011 1100111 255566677889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHH-----------------------HHHHHHcchHHHHHH
Q 019502 230 KTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFA-----------------------EVGMLIGGFWLKWWI 286 (340)
Q Consensus 230 k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 286 (340)
|++||+++.++.+++++|++..++...+.+.+......+... .............++
T Consensus 311 r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI 390 (953)
T TIGR00930 311 KAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPLI 390 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHHH
Confidence 999999999999999999999987777666443221111110 010111122356788
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCch--HHHhhcc-CCCCcceeeeEe
Q 019502 287 QAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-~~~~P~~a~~~~ 338 (340)
.+.++++++++.++++.+.+|+++++||||.+| ++|+|+| |+++|++|++++
T Consensus 391 ~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt 445 (953)
T TIGR00930 391 TAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLT 445 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHH
Confidence 889999999999999999999999999999999 8999999 689999998765
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=3.2e-38 Score=301.98 Aligned_cols=317 Identities=21% Similarity=0.258 Sum_probs=230.2
Q ss_pred cCCcccchhHHHHhhhhhcccccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCchhhhHHhhhC
Q 019502 17 TSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWISSAFG 95 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~ggi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~G 95 (340)
.+||+++++++++.++.+.+ ++..|. .+. .|... +..++++++++.+|.+++++||++++| ++||.|+|++|++|
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~~-~a~-~G~~~-i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYPT-FAT-SGFHL-VFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhHH-HHH-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 46789999999999987654 455553 333 56543 344555556557899999999999997 89999999999999
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 96 PFWGFQEGFWKWLSGVLDNALYPVL---FLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
|++|+.++|.+|+......+..... ...|... ++.+. +++...+..++++++.+++|++|.|..++++++.....
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~ 156 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAG 156 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999877554433222 2233321 23222 23455666677788999999999999999998866544
Q ss_pred HH-HHHHHHHHHhccccCCC---c--c--ccccC--ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHH
Q 019502 172 LC-PFVVMGILSIPRIKPRR---W--L--VVDFK--KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (340)
Q Consensus 172 ~~-~l~~~~i~~~~~~~~~~---~--~--~~~~~--~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~ 241 (340)
.. +++++++.+......++ . . +...+ ..+....+...+|+|.|+|..++++||+|||+|++||+++.+++
T Consensus 157 ~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i 236 (507)
T TIGR00910 157 ILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMI 236 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHH
Confidence 33 33333333322211111 1 1 11011 11222233446889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccc---hHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 242 LVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 242 i~~i~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
+..++|.+..+.+...+|+++.+.++. ++.+..+...+ ++...++.+..+++.+++.++++.+.+|+++++||||
T Consensus 237 ~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg 316 (507)
T TIGR00910 237 AAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKG 316 (507)
T ss_pred HHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999998888877788777654333 23333344433 5667778888899999999999999999999999999
Q ss_pred CchHHHhhccCCCCcceeeeEe
Q 019502 317 MLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 317 ~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
.+|++|+|+||+++|+++++++
T Consensus 317 ~lP~~~~k~nk~~~P~~a~~~~ 338 (507)
T TIGR00910 317 LLPAAFAKMNKHEVPVPLVIIQ 338 (507)
T ss_pred CcCHHHHhhCcCCCcHHHHHHH
Confidence 9999999999999999998765
No 34
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-39 Score=292.40 Aligned_cols=322 Identities=16% Similarity=0.205 Sum_probs=263.3
Q ss_pred ccccCCcccchhHHHHhhhhhcccccCch----hhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhh
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSGGPFGVE----DSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~ggi~~~~----~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 89 (340)
|++++|++++++.++++++. .|...+.. ..+.. +|+...+++|++++.+ .++++++++|+++++|++||.|.|
T Consensus 43 kqef~R~fs~~s~fg~sFs~-~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~-~i~va~slaEl~Sa~PtsGgLy~w 119 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSL-MGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFF-SICVALSLAELCSAMPTSGGLYFW 119 (550)
T ss_pred chhhhhhhhHHHHHHHHHHH-hcchhhhhhheeecccc-CChHHHHHHHHHHHHH-HHHHHhHHHHHHhhCCCCCcHHHH
Confidence 67899999999999999994 45222222 23333 6777778999999985 999999999999999999999999
Q ss_pred HHh----hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhh-----hhhhHHHHHHHHHHHHHHHHHhcchhH
Q 019502 90 ISS----AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-----LLIARIPALLGITGALTYLNYRGLHIV 160 (340)
Q Consensus 90 ~~~----~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (340)
+.. .+||..++++||...+++....++.....++.+.......+ ..++.+.+..++..+..++|+...|..
T Consensus 120 aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l 199 (550)
T KOG1289|consen 120 AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVL 199 (550)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHH
Confidence 875 57889999999999999999999999999988876653222 346778888999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccCC-Ccc-------cc----ccCccchHHHHH--HHHHhhhhHHhhhhhhhhcc
Q 019502 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPR-RWL-------VV----DFKKVDWRGYFN--SMFWNLNYWDKASTLAGEVE 226 (340)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-~~~-------~~----~~~~~~~~~~~~--~~~~af~G~e~~~~~~~e~k 226 (340)
++++++...+.+..+++..|.-....+.. .+. .. ++++.+|.-++. ...|.+.|+|+..|++||+|
T Consensus 200 ~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~ 279 (550)
T KOG1289|consen 200 ARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETK 279 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhc
Confidence 99999999998887776655443322211 111 11 122334444443 35699999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--ccc--ccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHh
Q 019502 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS--SEW--SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEM 302 (340)
Q Consensus 227 ~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (340)
||+|+.||+++.++.+..++-.+..+.+..++++|. +.+ ...|+.+++.+..|+-....+....+++.+-+..+.+
T Consensus 280 nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~ 359 (550)
T KOG1289|consen 280 NASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSL 359 (550)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999643 222 2589999999998877778888888999999999999
Q ss_pred hhhhHHHHHhhhcCCch--HHHhhccC-CCCcceeeeEe
Q 019502 303 SGDAFQLLGMSEMGMLP--AIFASRCL-YNGLLVTLRIK 338 (340)
Q Consensus 303 ~~~sR~l~~~a~d~~lP--~~~~~~~~-~~~P~~a~~~~ 338 (340)
.+.||..|+.+|||.+| ++++|+|+ .++|.||++++
T Consensus 360 ~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~ 398 (550)
T KOG1289|consen 360 TASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLS 398 (550)
T ss_pred HHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHH
Confidence 99999999999999999 89999997 59999999765
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=7.8e-37 Score=292.76 Aligned_cols=319 Identities=15% Similarity=0.191 Sum_probs=224.2
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCchhhhHHhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSA 93 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~-~Gg~y~~~~~~ 93 (340)
+++||+|+++++.++++.++| + ..|..... .|+.. ++.+++.++++.++.+++++|+++++|+ +||.|+|+++.
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~-~G~~~-i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFA--NSPRAFYL-MGYSA-IPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS 79 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCC--chHHHHHH-cChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 347899999999999999998 3 33444555 77765 5566666765578999999999999997 79999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHhchh----------hhhhhhHHHHHHHHHHHHHHHHHhcchhHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVL-FLDYLKHSLPI----------FNLLIARIPALLGITGALTYLNYRGLHIVGF 162 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 162 (340)
+||+.|+..+|.+|..+.......... ........++. .+........+++++++.+++|++|+|..+|
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~ 159 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAK 159 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999888777654333221 11111111110 0111122344556666899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHH----HHhccc-c---CCC---ccccccC----ccchHHHHHHHHHhhhhHHhhhhhhhhccC
Q 019502 163 SAVSLLVFSLCPFVVMGI----LSIPRI-K---PRR---WLVVDFK----KVDWRGYFNSMFWNLNYWDKASTLAGEVEN 227 (340)
Q Consensus 163 ~~~~~~~~~~~~l~~~~i----~~~~~~-~---~~~---~~~~~~~----~~~~~~~~~~~~~af~G~e~~~~~~~e~k~ 227 (340)
++.+....++...+++++ ..+... + +.+ +.+...+ +.++...+....|+|.|+|...+++||+||
T Consensus 160 i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~ 239 (496)
T PRK15238 160 VTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTEN 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccC
Confidence 999877666543221111 111111 1 111 1110011 112233345678999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc------cchHH--H--------------HHHHHcchHHHHH
Q 019502 228 PSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWS------DGYFA--E--------------VGMLIGGFWLKWW 285 (340)
Q Consensus 228 p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~------~~~~~--~--------------~~~~~~~~~~~~~ 285 (340)
|+|++||++..+.....++|++..+......|+++...+ ..|.. + ......+.+...+
T Consensus 240 p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~ 319 (496)
T PRK15238 240 PEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTLGVWFARI 319 (496)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhhhHHHHHH
Confidence 999999999999999999999998877766666553321 11111 0 0111123555567
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCCCcceeeeEe
Q 019502 286 IQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+.+..+++.+++.+++..+.+|.+++.+|||.+||+|+|+||+++|++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~ 372 (496)
T PRK15238 320 TGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQ 372 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHH
Confidence 78888999999999999999999999999999999999999999999998654
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4e-39 Score=307.83 Aligned_cols=311 Identities=23% Similarity=0.301 Sum_probs=252.3
Q ss_pred HHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHH
Q 019502 27 IALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (340)
Q Consensus 27 ~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~ 105 (340)
.++++++++| |.|.........+|+...++++++.+++ .++.+.+++|+++++|++||.|.|++|.+||..|+..||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 4567888888 7775555443337775557889998885 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHh--chhhhhhhhH-HHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHH
Q 019502 106 KWLSGVLDNALYPVLFLDYLKHS--LPIFNLLIAR-IPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~ 182 (340)
||+++....+.+....+.+++.+ ++.....+.. .+...++.++.+.+|++|+|..++++.+...++++.++.+++.+
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~ 161 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVG 161 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhc
Confidence 99999999999998888888766 4432211111 13467888889999999999999999999999999888877777
Q ss_pred hc--ccc--CCCc---c---------ccc---cCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHH
Q 019502 183 IP--RIK--PRRW---L---------VVD---FKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (340)
Q Consensus 183 ~~--~~~--~~~~---~---------~~~---~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~ 240 (340)
+. ..+ +.+. . +.+ .+..++.+ .+...+++|.|+|....++||+|||||++||++..+.
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~ 241 (478)
T PF00324_consen 162 VIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSV 241 (478)
T ss_pred ccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhh
Confidence 21 111 1111 0 000 01112444 3456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccc-----chHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 019502 241 VLVVSSYLIPLLAGTGGLTSLSSEWSD-----GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEM 315 (340)
Q Consensus 241 ~i~~i~y~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 315 (340)
...+++|++..++.....|+++..... .|+.+..+...+++...++.+..+.+++++.++.+...||++++|+||
T Consensus 242 ~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 242 LRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred hhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 999999999999999999988743222 488889999999999999999999999999999999999999999999
Q ss_pred CCch-HHHhhccCCCCcceeeeEe
Q 019502 316 GMLP-AIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 316 ~~lP-~~~~~~~~~~~P~~a~~~~ 338 (340)
|.+| +++++.+|+|+|++|++++
T Consensus 322 g~lP~~~~~~~~k~~~P~~Ai~~~ 345 (478)
T PF00324_consen 322 GLLPKKFFARHPKNGVPYVAILVS 345 (478)
T ss_pred hhhhhhhhhhhhcCCceEEEEeee
Confidence 9999 5555555899999999876
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=3.4e-27 Score=219.38 Aligned_cols=281 Identities=13% Similarity=0.058 Sum_probs=221.2
Q ss_pred HHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHH
Q 019502 27 IALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (340)
Q Consensus 27 ~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~ 105 (340)
+.+.+++++| |++.+|..... .|....++..++.++ .....+++++|+++++|+++|.|+|+++.+||+.+++.+|.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~-~g~~~~~~~~i~~~~-~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~ 80 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAG-AWFIWTLLLLILLWF-LMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLS 80 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHH
Confidence 4567788999 99999998876 333233455566666 48899999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhc
Q 019502 106 KWLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIP 184 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 184 (340)
+++.+......+....++++..+++.. ...++..+..+++.++...++++|.|..+|++.+....++..++++++.++.
T Consensus 81 ~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~ 160 (381)
T TIGR00837 81 LLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLP 160 (381)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888787777777777776532 2234555566777888899999999999999999999999988888888887
Q ss_pred cccCCCccccccCccchHH---HHHHHHHhhhhHH-hhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 019502 185 RIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWD-KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS 260 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~---~~~~~~~af~G~e-~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~ 260 (340)
+.+++++.+...++.++.. .++..+++| |+| ..+...+|.||++|++||+++.+..+..++|++...+....+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~ 239 (381)
T TIGR00837 161 HVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPR 239 (381)
T ss_pred hccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7666666554221223433 345566777 564 68888999987789999999999999999999999999999998
Q ss_pred CCccc------ccchHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019502 261 LSSEW------SDGYFAEVGMLI-GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (340)
Q Consensus 261 ~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 310 (340)
+++.+ +.+++.+..+.. .+++...++.++..+++.++.++...+.++.+.
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 240 SEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88542 224555666654 556788899999999999999998888775543
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.94 E-value=1.8e-24 Score=199.55 Aligned_cols=285 Identities=16% Similarity=0.098 Sum_probs=227.9
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCch
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~ 97 (340)
+|+|.+|.+++.+++++| |++..|..+...+|+.+ ++++++++++ .++.+++++|+++++|+. +.++|.++.+||+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~-wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDG-WISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCe-eHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 478999999999999999 99999998876567654 6888888874 999999999999999987 6999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH-HH
Q 019502 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP-FV 176 (340)
Q Consensus 98 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~ 176 (340)
.|++.+|.++.+.....+...+..+++++..+. ++.|.+...+.+++++.+.+.+|+|..+|++.+...+.+.. ++
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888888888875432 24566777788888899999999999999999999888776 34
Q ss_pred HHHHHHhccccCCCccccccCccchHHHH----HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 019502 177 VMGILSIPRIKPRRWLVVDFKKVDWRGYF----NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (340)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~ 252 (340)
++........+.++..|..+ .++.+.+ ....++|.|+|....+.+|+||| |+.||++..+..+++++|.+...
T Consensus 155 il~~~~~~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred HHHHHhcccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445556665542 3344433 35679999999999999999997 56999999999999999999999
Q ss_pred HHHhccCCCCcccccchHHHHHHHHcch-HHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502 253 AGTGGLTSLSSEWSDGYFAEVGMLIGGF-WLKWWI---QAASAMSNLGLFEAEMSGDAFQLLGM 312 (340)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~sR~l~~~ 312 (340)
+....+++++.++...|..+..+....+ ...++= ...-+.+.+.....+++...+.+.+.
T Consensus 232 ~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 232 VSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999887533 444433 33334555556666777777776544
No 39
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=5e-20 Score=157.58 Aligned_cols=277 Identities=18% Similarity=0.132 Sum_probs=176.6
Q ss_pred ccccccCCcccchhHHHHhhhhhcccc-cCchhhhhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhh
Q 019502 12 QKAAKTSPKLTVLPLIALIFYEVSGGP-FGVEDSVKA-GGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (340)
Q Consensus 12 ~~~~~~~r~l~~~~~~~l~~~~~~ggi-~~~~~~~~~-~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 89 (340)
++...+-|+.+.+|++...++.+.+|+ ...+.-+.. ..|.. .+.+|++++++ .++.+++|+|+++++|++||.|.|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceEEE
Confidence 455678999999999999999775543 232332222 23444 46889998885 999999999999999999999999
Q ss_pred HHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHH
Q 019502 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLV 169 (340)
Q Consensus 90 ~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 169 (340)
.+|++||+.|++.||..|+.+....+..+-... ++.... +....+.. ..-......+...|.+..+|...+...
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~~~i~---~~~~~f~~-~~s~~~i~~~i~~~~~~~~~~v~il~~ 156 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LNFNIQ---NQFEQFLI-VESLFPIVLLIIANKKIYAKIVDILAI 156 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheee--eeeeeH---HHHHHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999998888776654322 111111 11111111 111122222333456777776666433
Q ss_pred HHHHHHHHHHHHHhccccC-CCccccccC-ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHH
Q 019502 170 FSLCPFVVMGILSIPRIKP-RRWLVVDFK-KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY 247 (340)
Q Consensus 170 ~~~~~l~~~~i~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y 247 (340)
...+ .+++...+ -|+...+.+ +......+....-+|.=.|+..++++|.||.+|....+-+.+...+.++-
T Consensus 157 a~~i-------~aif~~~~s~n~~~~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ 229 (399)
T PHA02764 157 AQII-------IAIFIAFKSFNFQYQNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILS 229 (399)
T ss_pred HHHH-------HHHHhhccceeEEEcceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHH
Confidence 3332 12222222 233222111 11122222333445666789999999999999999888888887776665
Q ss_pred HHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccC
Q 019502 248 LIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCL 327 (340)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~ 327 (340)
+..+. .+ + . ++-+.+....++-+....--.||..++|+.|+.+|++|+|.||
T Consensus 230 ii~sy-----------~n----~-~------------il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~ 281 (399)
T PHA02764 230 IIDSY-----------SN----L-N------------ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINP 281 (399)
T ss_pred HHHhh-----------hh----H-H------------HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCC
Confidence 55441 00 1 1 1111133344444444555689999999999999999999998
Q ss_pred CCCcc
Q 019502 328 YNGLL 332 (340)
Q Consensus 328 ~~~P~ 332 (340)
++|+
T Consensus 282 -nv~~ 285 (399)
T PHA02764 282 -NVLL 285 (399)
T ss_pred -Ccee
Confidence 6776
No 40
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.83 E-value=5.6e-18 Score=156.60 Aligned_cols=281 Identities=14% Similarity=0.109 Sum_probs=209.5
Q ss_pred HHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHH------HhccCCCCCchhhhHHhhhCchhH
Q 019502 27 IALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAE------LATSFPENGGYVIWISSAFGPFWG 99 (340)
Q Consensus 27 ~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~e------l~~~~p~~Gg~y~~~~~~~G~~~g 99 (340)
+...+++.+| |++.+|....+ .| ++++++.+++ ..+..+.+++ +.+++| +.+.++++++.+||+.|
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~-~G----~i~~li~~l~-~~pl~~~~~~ll~~~~l~~~~p-~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGL-GG----LWVLVLMAII-AYPLTYFGHRALARFLLSSKNP-CEDITEVVEEHFGKNWG 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CH----HHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHcCHHHH
Confidence 4456778899 99999987543 44 3445555553 5555555555 445555 45899999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhchh-hh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHH
Q 019502 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVV 177 (340)
Q Consensus 100 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 177 (340)
.+.++.|++........++...++.+.+++.+ +. +..+..+..++++++..+++..|.|..+|++.+....+++.++.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~ 161 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVL 161 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887766666555442 11 12245566677777789999999999999999999999988888
Q ss_pred HHHHHhccccCCCccccccCccch---HHHHHHHHHhhhhHHhhhhhh----hhccCC---CCcHHHHHHHHHHHHHHHH
Q 019502 178 MGILSIPRIKPRRWLVVDFKKVDW---RGYFNSMFWNLNYWDKASTLA----GEVENP---SKTFPKALLGAVVLVVSSY 247 (340)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~G~e~~~~~~----~e~k~p---~k~~p~a~~~~~~i~~i~y 247 (340)
+.+..+.+.+.++..........+ ...++..+|+|.|+|..++++ +|.+|| +|+..|++..+..+..++|
T Consensus 162 l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y 241 (397)
T TIGR00814 162 LSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATV 241 (397)
T ss_pred HHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777665322112223 334567899999999999998 667655 4778999999999999999
Q ss_pred HHHHHHHHhccCCCCcc----cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 019502 248 LIPLLAGTGGLTSLSSE----WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (340)
Q Consensus 248 ~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 314 (340)
+...+++...+++++.. .+.+.+..+.+....++...+..+...++...|..+...+....+..+-+
T Consensus 242 ~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 242 MFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999988742 22233555555666778887788887888888888877777777766663
No 41
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.81 E-value=3.1e-17 Score=151.96 Aligned_cols=291 Identities=16% Similarity=0.091 Sum_probs=234.5
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCch
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~ 97 (340)
|+-+.++..++.+|+.+| |++.+|..... .|-....+..+++.. +....++.++|.+.+.|++.+.-+.++|.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~-~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWP-LMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 456788999999999999 99999998776 666655565666665 478899999999999999889999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHH
Q 019502 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (340)
Q Consensus 98 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 176 (340)
.+++.+..|.+........+....++.+.+.++... .+.++....+++..++..+.+.|.|.++|+++.+...+++.++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~ 158 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFI 158 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777777888888888888776432 2344556667777788888899999999999999999999999
Q ss_pred HHHHHHhccccCCCccccccCccchHH---HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 177 VMGILSIPRIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
.+++..+.+.+.++.......+.+|.. .++..+++|.-....+.+.+..++-+|+++|+++.+..+..++|++...+
T Consensus 159 ~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~ 238 (394)
T PF03222_consen 159 ILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFS 238 (394)
T ss_pred HHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888877766553333445554 44678899999999999999999777889999999999999999999999
Q ss_pred HHhccCCCCcc------cccchHHHHHHH-HcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019502 254 GTGGLTSLSSE------WSDGYFAEVGML-IGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (340)
Q Consensus 254 ~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 311 (340)
+...+|+++.. ++..++....+. ..+++......++...+..++..+...+..+.+.+
T Consensus 239 ~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 239 ILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887632 122344444444 45677888889999999998888888887777644
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.81 E-value=3.9e-17 Score=148.22 Aligned_cols=283 Identities=18% Similarity=0.122 Sum_probs=230.8
Q ss_pred cccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchh
Q 019502 20 KLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (340)
Q Consensus 20 ~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 98 (340)
|+|..|...+.+...+| +++..|..+...++ .+ +++.++.++ ..+...+.+..+.+++|+. ...++.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~-Wi~~ll~~~-~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DA-WISVLLGGL-IGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc-HHHHHHHHH-HHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHH
Confidence 68999999999999999 89999988766454 33 567777777 4999999999999999998 69999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-chhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHH
Q 019502 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHS-LPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVV 177 (340)
Q Consensus 99 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 177 (340)
|...+..+.+.+....+...+..++.++.. +| +.|.+.....+++.+.+...+|++..+|.........++.++.
T Consensus 77 g~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~ 152 (320)
T PF03845_consen 77 GKIINLLYILYFLLISALVLREFSEFIKTYLLP----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLL 152 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865 44 6788888889999999999999999999999888888887777
Q ss_pred HHHHHhccccCCCccccccCccchHHH---HHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019502 178 MGILSIPRIKPRRWLVVDFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAG 254 (340)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~ 254 (340)
+........+.++..|.. +.++.+. .....+.|.|.|....+.+.+|||+ +..|....+..++++++....+..
T Consensus 153 i~~~~~~~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~ 229 (320)
T PF03845_consen 153 ILLLSIPNIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFIT 229 (320)
T ss_pred HHHHhcccCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777767777777754 3344433 3455678999999999999999974 589999999999999999999999
Q ss_pred HhccCCCCcccccchHHHHHHHHc-chHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 019502 255 TGGLTSLSSEWSDGYFAEVGMLIG-GFWLKWW---IQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (340)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~sR~l~~~a 313 (340)
...+++++.+....|..+..+... ++...++ +...-+.+.+.....+++..++.+.++-
T Consensus 230 i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 230 IGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLF 292 (320)
T ss_pred HHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888888889888888774 3344444 3333345555566667777777664433
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.80 E-value=1e-16 Score=146.37 Aligned_cols=274 Identities=13% Similarity=0.050 Sum_probs=205.5
Q ss_pred hhhhhcc-cccCchhhhhhcCChH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHH
Q 019502 30 IFYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106 (340)
Q Consensus 30 ~~~~~~g-gi~~~~~~~~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~ 106 (340)
.++--.| |.+..|+.+.+.+|.. ...++|++.++. ..+.+++ +.|++||.|++.++.+||+.|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHH
Confidence 3444577 8888888776645443 346788888874 5555555 8889999999999999999999999976
Q ss_pred HHHH-hhh----HHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHH
Q 019502 107 WLSG-VLD----NALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (340)
Q Consensus 107 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~ 181 (340)
++.. ... .+..+...+ +..++|..+......+..+++..+..++++++.|..++++++.++.+++.+..+++.
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~ 154 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIK 154 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6543 333 233333322 444555311223445667778888888999999999999999999999999999999
Q ss_pred HhccccCCCccc-cccCc-cchHHHHHHHHHhhh-------hHHhhhhhhh-hccCCCCcHHHHHHHHH-HHHHHHHHHH
Q 019502 182 SIPRIKPRRWLV-VDFKK-VDWRGYFNSMFWNLN-------YWDKASTLAG-EVENPSKTFPKALLGAV-VLVVSSYLIP 250 (340)
Q Consensus 182 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~af~-------G~e~~~~~~~-e~k~p~k~~p~a~~~~~-~i~~i~y~l~ 250 (340)
++.+...+...+ .+..+ ..+...+....++++ |+-...++.+ |.|||+|+.|+.+..+. ....+.|+..
T Consensus 155 g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~ 234 (378)
T TIGR00796 155 ALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYL 234 (378)
T ss_pred HHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987644322112 11112 446666667778888 8988888888 99999999999999998 7777788888
Q ss_pred HHHHHhccCCCCcc---cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502 251 LLAGTGGLTSLSSE---WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (340)
Q Consensus 251 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 312 (340)
.++.....+.++.. +....+.++.+..+|+....++.+.+.++|+++.++...++++.....
T Consensus 235 ~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~ 299 (378)
T TIGR00796 235 SLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888887765433 466789999999999999999999999999999999999977665433
No 44
>PRK10483 tryptophan permease; Provisional
Probab=99.79 E-value=7e-17 Score=148.46 Aligned_cols=296 Identities=14% Similarity=0.091 Sum_probs=229.3
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
.+|++.+.+...++..|+.+| |.+++|...+. .|-...++..+++.+ .....++...|.+.++|++-+.-+.+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~-~GF~~s~~~l~~~W~-~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG-AWFFWSMAALIFTWF-CMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 467889999999999999999 99999988777 676666666666666 488899999999999999888999999999
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
||....+.+..+.+-.......+....++.++..+++.+-+.+.....+++..++..+.+.|.|.++|+++++...+++.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~ 163 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVIT 163 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99988777777666655566667777888888777643323456677888999999999999999999999999999988
Q ss_pred HHHHHHHHhccccCCCcccccc-CccchH---HHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKPRRWLVVDF-KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (340)
Q Consensus 175 l~~~~i~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~ 250 (340)
++..+...+.+.+.++..+... ++..|. ..++..+++|.=....+.+.++.++-+|+++|+++.+..+..++|++.
T Consensus 164 f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 164 FFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777666666655543322 122232 345677888888899999999988755789999999999999999999
Q ss_pred HHHHHhccCCCCcc------cccchH-HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 019502 251 LLAGTGGLTSLSSE------WSDGYF-AEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (340)
Q Consensus 251 ~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 313 (340)
..++...+|++++. ++.+.+ ..+.+....++...+..++..++..+|..+...+....+.++-
T Consensus 244 ~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~ 313 (414)
T PRK10483 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF 313 (414)
T ss_pred HHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999977631 112222 3333344556777888888888888888777777777665544
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.77 E-value=3e-16 Score=144.18 Aligned_cols=289 Identities=10% Similarity=0.013 Sum_probs=219.5
Q ss_pred cchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHH
Q 019502 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~ 100 (340)
+.....++..|+.+| |.+++|...+. .|-....+..+++.+ .....++.+.|.+.++|+.-+.-+.++|.+||....
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~-~Gf~~s~~ll~~~w~-~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG-AWFFWGAFILIIAWF-SMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 777799999999999 99999988777 776666666666666 488899999999999999889999999999998777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhchh-hhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHH
Q 019502 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (340)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 179 (340)
+.+..+.+-.-.....+....++.++..++. .+-+.++....+++.+++..+.+.|.|.++|+++++...+++.++..+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~ 167 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVF 167 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776655556667777777878777753 111234445668889999999999999999999999999998888877
Q ss_pred HHHhccccCCCccccccCc--c----chHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 180 ILSIPRIKPRRWLVVDFKK--V----DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
.....+.++++........ . .....++..+++|.=....+.+....++-.|+.+|+++.+..+..++|++...+
T Consensus 168 ~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ 247 (415)
T PRK09664 168 GSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYC 247 (415)
T ss_pred HHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766654332111 1 122345677888888889999999888766889999999999999999999999
Q ss_pred HHhccCCCCcc---cccchHHH----HHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 019502 254 GTGGLTSLSSE---WSDGYFAE----VGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (340)
Q Consensus 254 ~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 312 (340)
.+..+|++++. .......+ ..+...+++...+..++..++..+|..+...+....+.++
T Consensus 248 ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 248 TMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877632 11122333 3334456777778888878887777777766666665544
No 46
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.76 E-value=5.8e-16 Score=144.41 Aligned_cols=291 Identities=16% Similarity=0.082 Sum_probs=228.5
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-chhhhHHh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISS 92 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~ 92 (340)
+..+++-+..+.+....++.+| |++.+|...+. +|-...+...++.+. ......+++.|...+.|+.. +.++-+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~-~G~~~~l~~l~i~~~-~t~~s~~~l~~~~~~~~~~~~~~~~~~~~ 80 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGG-GGFWPGLLLLIIAWP-LTYLSLLLLLEALLSSPNGKASITSLVED 80 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhcC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 3456778888999999999999 99999998877 776665555666666 48889999999999999984 89999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchh-hhhh-hhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLL-IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (340)
-+||..+++.+..+.+.......++....++.+...+++ ++.. .++.+..+++..+...+.+.|.+...|.+..+...
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~ 160 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFG 160 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 999999999999999998888889999988888888774 2222 56677778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCccccc----cCccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCc-HHHHHHHHHHHHHH
Q 019502 171 SLCPFVVMGILSIPRIKPRRWLVVD----FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT-FPKALLGAVVLVVS 245 (340)
Q Consensus 171 ~~~~l~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~-~p~a~~~~~~i~~i 245 (340)
+++.+++++...+.+.++++....+ .....+...++..+++|.+..+.+.+..|+|+++|+ ++|++..+..+..+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~v 240 (415)
T COG0814 161 KVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALV 240 (415)
T ss_pred HHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 9999988888877776655443321 112334455678899999999999999999988887 99999999999999
Q ss_pred HHHHHHHHHHhccCCCCc----c---cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019502 246 SYLIPLLAGTGGLTSLSS----E---WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (340)
Q Consensus 246 ~y~l~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 307 (340)
+|+...+..+.+++.+.. + ++...+....+....+.......+...++.+++..+...+.=.
T Consensus 241 lyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~ 309 (415)
T COG0814 241 LYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFE 309 (415)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHH
Confidence 999999999999998641 1 1222233333334456667777777777776665544444333
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.75 E-value=7.2e-16 Score=142.34 Aligned_cols=291 Identities=14% Similarity=0.101 Sum_probs=224.3
Q ss_pred cchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHH
Q 019502 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~ 100 (340)
+.+...++..|+.+| |++++|..... .|....++..+++.. +....++.++|.+.++|++.+.-+.++|.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~-~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWA-LMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 667888999999999 99999998877 666554444444444 377788889999999988888999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHH
Q 019502 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (340)
Q Consensus 101 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 179 (340)
+....|++........+....++.+.+.++++ ..+.+.....+.+..+...+.+.|.|.++|+++++...+++.++...
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~ 161 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVML 161 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777777778888666666555421 11223335556777777778899999999999999999888888777
Q ss_pred HHHhccccCCCccccccCccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019502 180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~ 259 (340)
...+.+.+.++......+..-....++..+++|.=....+.+....++.+|+.+|+++.+..+..++|++...++...+|
T Consensus 162 ~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~ 241 (403)
T PRK15132 162 ALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSID 241 (403)
T ss_pred HHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777666553221111234455778899999999999999998877889999999999999999999999999999
Q ss_pred CCCcc----cc---cchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 019502 260 SLSSE----WS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (340)
Q Consensus 260 ~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 314 (340)
+++.. ++ ++.+..+.+....++...+..++..++..+|..+...+....+.++-+
T Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 242 STTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 87632 11 123444555556788888888888889888888888888777766543
No 48
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.72 E-value=3.7e-17 Score=152.45 Aligned_cols=267 Identities=16% Similarity=0.173 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhcc-CCCCCchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhch------hh-----h
Q 019502 66 SIPEALITAELATS-FPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP------IF-----N 133 (340)
Q Consensus 66 ~~~~~~~~~el~~~-~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~ 133 (340)
.+.+.++..-+++. .-+.||.|..++|.+||..|--.|..+.+++++.++..+.++.|-+...+. .. +
T Consensus 113 ~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~ 192 (945)
T KOG1288|consen 113 LLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPD 192 (945)
T ss_pred HHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCC
Confidence 34444555555543 335689999999999999999999999999999999999999988877664 11 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC-cc-----cc--------ccCcc
Q 019502 134 LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR-WL-----VV--------DFKKV 199 (340)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~-~~-----~~--------~~~~~ 199 (340)
..|+.++-+..+..++..+.+.|-..++|...+.+++....+.-..+ ++...++.+ -. |. +..+.
T Consensus 193 g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~i-S~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~ 271 (945)
T KOG1288|consen 193 GYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPI-SFIFVGPFKDPIPVPGDPILSNTTLFVHYTGL 271 (945)
T ss_pred CcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhh-eeEEeccccCCCCCCCCccccCcceeeeecCc
Confidence 45778888888888899999999999999988877655544443333 222222111 10 00 01122
Q ss_pred ch-----------------------HHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019502 200 DW-----------------------RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (340)
Q Consensus 200 ~~-----------------------~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~ 256 (340)
+| ...+...+-+-.|.-+.+++++|.|+|.|.+||+.+.+.+...+.|+++.+...+
T Consensus 272 ~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 272 SWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred cHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 23 2333444455678889999999999999999999999999999999999999888
Q ss_pred ccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCch--HHHhhcc-CCCCcce
Q 019502 257 GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRC-LYNGLLV 333 (340)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-~~~~P~~ 333 (340)
..+...+.++-.. .+.. +....++.+..+-..+.+....+++.||++.++|||+.+| ..++|.. ..+.|+.
T Consensus 352 t~~r~~Lq~dy~v----~~~i--sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~ 425 (945)
T KOG1288|consen 352 TVPRTLLQNDYDV----MMHI--SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYV 425 (945)
T ss_pred CcchHHhhhchhh----eeec--cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCcee
Confidence 7776555433211 1111 2233555666677777778888999999999999999999 5777776 5889999
Q ss_pred eeeEec
Q 019502 334 TLRIKF 339 (340)
Q Consensus 334 a~~~~~ 339 (340)
|+.++|
T Consensus 426 av~vtw 431 (945)
T KOG1288|consen 426 AVGVTW 431 (945)
T ss_pred eeeHHH
Confidence 998876
No 49
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.3e-16 Score=144.90 Aligned_cols=321 Identities=15% Similarity=0.057 Sum_probs=232.8
Q ss_pred ccCCcccchhHHHH-hhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCchhhhHHh
Q 019502 16 KTSPKLTVLPLIAL-IFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSF-PENGGYVIWISS 92 (340)
Q Consensus 16 ~~~r~l~~~~~~~l-~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~-p~~Gg~y~~~~~ 92 (340)
+.+-+++||+.++. ++-++.| -+|.-.+.+..++|-.-.++-..+... ...++.++..-++++= -++||.|...+|
T Consensus 25 ~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~-vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 25 KGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTV-VTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred CCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHH-HHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 45677899998887 5666777 455555555444666544443444444 4788888887777764 466999999999
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
.+|+..|-..|..|.++....++.++.+++|.+..++...+.....- ++.+...+...++.-|.|+..|.|.++..+..
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~g-i~~vt~~ill~i~~ag~~w~~k~q~~ll~il~ 182 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDG-IGSVTVLILLAINVAGVEWEAKLQIVLLLILL 182 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcc-hhHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887654222222 56778888899999999999999999888888
Q ss_pred HHHHHHHHHHhcccc-C-------------CCccccccCccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH
Q 019502 173 CPFVVMGILSIPRIK-P-------------RRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (340)
Q Consensus 173 ~~l~~~~i~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~ 238 (340)
+.+.-..+..++..+ . +|+.+.-.+...|.++++..|-+..|.=+..+++++.|+|++++|++-+.
T Consensus 183 iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~ 262 (643)
T KOG2083|consen 183 IAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALL 262 (643)
T ss_pred HHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhh
Confidence 777776666655432 0 01111111234566677777778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccc----ccc----hHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 019502 239 AVVLVVSSYLIPLLAGTGGLTSLSSEW----SDG----YFAEVGMLIG-GFWLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (340)
Q Consensus 239 ~~~i~~i~y~l~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 309 (340)
+......+|.....-...+.-.+...+ .+. -+.+..+... -......+......+..++..+.+..+++++
T Consensus 263 Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~ 342 (643)
T KOG2083|consen 263 AIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVL 342 (643)
T ss_pred hhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999886665443322222111 111 1222222221 2334455666777888888899999999999
Q ss_pred HHhhhcCCch--HHHhhcc-CCCCcceeeeEe
Q 019502 310 LGMSEMGMLP--AIFASRC-LYNGLLVTLRIK 338 (340)
Q Consensus 310 ~~~a~d~~lP--~~~~~~~-~~~~P~~a~~~~ 338 (340)
+++.+|+..| .++.|-. |++.|.++..++
T Consensus 343 QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~ 374 (643)
T KOG2083|consen 343 QALCKDSLYPSILFFAKGYGKNKEPLRGYLLT 374 (643)
T ss_pred HHHHhcCCCccHHHHHccCCccccchHHHHHH
Confidence 9999999999 5777655 688998875543
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.64 E-value=2.1e-13 Score=125.64 Aligned_cols=285 Identities=14% Similarity=0.058 Sum_probs=210.4
Q ss_pred HHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCchhhhHHhhhCchhHHHHHHH
Q 019502 28 ALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSF-PENGGYVIWISSAFGPFWGFQEGFW 105 (340)
Q Consensus 28 ~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~-p~~Gg~y~~~~~~~G~~~g~~~g~~ 105 (340)
...+|+.+| |++.+|-.... .|....++..+++.. +.....+.+.|.+... |++.+.-+.+++.+||..+.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~-~Gf~p~lillll~~p-~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF-GGLIPILLMLVLAYP-IAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 456677899 99999988776 665544444444444 4666778899999888 5556788899999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhch-hhhh-hhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHh
Q 019502 106 KWLSGVLDNALYPVLFLDYLKHSLP-IFNL-LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSI 183 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~ 183 (340)
|.+........+.....+.+..++. +++- +.++.+..++++.+...+...|.|...|++.++...+++.++.+.+..+
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~Li 183 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLI 183 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988777776676666555554322 1221 3467788899999999999999999999999999999999999999888
Q ss_pred ccccCCCcccccc----C--ccc----hHHHHHHHHHhhhhHHhhhhhhhh----cc-----C-CCCcHHHHHHHHHHHH
Q 019502 184 PRIKPRRWLVVDF----K--KVD----WRGYFNSMFWNLNYWDKASTLAGE----VE-----N-PSKTFPKALLGAVVLV 243 (340)
Q Consensus 184 ~~~~~~~~~~~~~----~--~~~----~~~~~~~~~~af~G~e~~~~~~~e----~k-----~-p~k~~p~a~~~~~~i~ 243 (340)
++.+.++....+. + ..+ ....++..+++|.=.-+.+.++.. .+ | .+|+..|++..+..+.
T Consensus 184 P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~ 263 (443)
T PRK13629 184 PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLM 263 (443)
T ss_pred HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 8887776653221 1 111 223346677777766666655555 42 2 2477999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcc----cccchHHHHHHHHcc---------hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019502 244 VSSYLIPLLAGTGGLTSLSSE----WSDGYFAEVGMLIGG---------FWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (340)
Q Consensus 244 ~i~y~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 310 (340)
.++|+...+.+...+++++.. .+.+.+..+++...+ ++...+..+...++...+..+-..+..-.+.
T Consensus 264 lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~ 343 (443)
T PRK13629 264 VAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLN 343 (443)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 233337777777766 6677778888788888888877777776666
Q ss_pred Hhhh
Q 019502 311 GMSE 314 (340)
Q Consensus 311 ~~a~ 314 (340)
.+-+
T Consensus 344 gl~~ 347 (443)
T PRK13629 344 GLIL 347 (443)
T ss_pred HHHH
Confidence 6664
No 51
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.7e-14 Score=134.68 Aligned_cols=313 Identities=18% Similarity=0.200 Sum_probs=205.7
Q ss_pred CcccchhHHHH-hhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCchhhhHHhhhC
Q 019502 19 PKLTVLPLIAL-IFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATS-FPENGGYVIWISSAFG 95 (340)
Q Consensus 19 r~l~~~~~~~l-~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~-~p~~Gg~y~~~~~~~G 95 (340)
-+++..-.+.+ ++=++.| -.|.--..+...+|-.....-.++++.+ .++++.++.-+++. --.+||.|..++|.+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~c-TmLTaISmSAIATNGVVpaGGsYfmISRsLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLC-TMLTAISMSAIATNGVVPAGGSYFMISRSLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCCCeeEEEecccC
Confidence 34444433333 4455555 2232222232224444333334444554 66677777777664 3356899999999999
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hchhhh--------hh----h-hHHHHHHHHHHHHHHHHHhcchhHH
Q 019502 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKH-SLPIFN--------LL----I-ARIPALLGITGALTYLNYRGLHIVG 161 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~----~-~~~~~~~~~~~~~~~~~~~g~~~~~ 161 (340)
|..|-.+|.++.++..+..+.+..+..+.+.. .+|... .+ . ..-+-+.+++++.+++...|+|.+.
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vn 270 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVN 270 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877654 666321 00 0 1113346677778888889999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhccc-cC-----------------------------CCc--------------------
Q 019502 162 FSAVSLLVFSLCPFVVMGILSIPRI-KP-----------------------------RRW-------------------- 191 (340)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~i~~~~~~-~~-----------------------------~~~-------------------- 191 (340)
++..++....++.++.+...++-.. ++ .+.
T Consensus 271 k~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~ 350 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDE 350 (1075)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCccccc
Confidence 9888777666655554443332110 00 000
Q ss_pred -cc---c----ccCc--------cchHHH--------------------------------H----HHHHHhhhhHHhhh
Q 019502 192 -LV---V----DFKK--------VDWRGY--------------------------------F----NSMFWNLNYWDKAS 219 (340)
Q Consensus 192 -~~---~----~~~~--------~~~~~~--------------------------------~----~~~~~af~G~e~~~ 219 (340)
.. . +.++ .-|+.. | ..-|-+-.|+=+.+
T Consensus 351 y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGS 430 (1075)
T KOG2082|consen 351 YFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGS 430 (1075)
T ss_pred ccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecC
Confidence 00 0 0000 001000 1 11123456888899
Q ss_pred hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcc-------h-HHHHHHHHHHH
Q 019502 220 TLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGG-------F-WLKWWIQAASA 291 (340)
Q Consensus 220 ~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~ 291 (340)
+.++++|||||.+|.+.+.+.+....+|+...+.+..+.....+.. ...+.+.+ . +..+++.+..+
T Consensus 431 NrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRD------KfG~sv~g~lVva~laWPsPwVi~IGsF 504 (1075)
T KOG2082|consen 431 NRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRD------KFGQSVGGNLVVATLAWPSPWVIVIGSF 504 (1075)
T ss_pred CCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhh------hhhhhccCcEEEEEecCCCceeeehhHH
Confidence 9999999999999999999999999999998888777766322211 01111111 1 23477888999
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhcCCch--HHHhhccCCCCcceeeeEe
Q 019502 292 MSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 292 ~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~~~~~P~~a~~~~ 338 (340)
+|+++..+-++.+++|++++.|||+.+| +.|+|..+++.|.+|++++
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT 553 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLT 553 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHH
Confidence 9999999999999999999999999999 8999999999999998754
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.46 E-value=4.5e-11 Score=109.85 Aligned_cols=291 Identities=13% Similarity=0.112 Sum_probs=188.0
Q ss_pred ccccCCcccchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CC
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-------NG 84 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~-------~G 84 (340)
+++.++++|.+|+++.+.+..+| | +-+....+.. +||++..| +|+.++ +...+.++=.-|+.+|.+ .|
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFW-MWi~a~-~Gmatk~~E~~La~~yR~~~~~G~~~G 88 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFW-MWISAL-LGMATKYAEVTLAQKYREKDEDGEYRG 88 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHH-HHHHHH-HHHHHHHHHHHHHHHheEECCCCCEee
Confidence 44567789999999999999999 6 6777777777 89987433 455555 377677666667776643 27
Q ss_pred chhhhHHhhhC-chhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHH
Q 019502 85 GYVIWISSAFG-PFWGFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGF 162 (340)
Q Consensus 85 g~y~~~~~~~G-~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 162 (340)
|..+|.+|.+| |+.+.+.+......+... ...++...++.+++.++ .+++..++++..+..++.+.|+|..++
T Consensus 89 GP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI~~ 163 (416)
T PF01235_consen 89 GPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRIAK 163 (416)
T ss_pred cHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHHHH
Confidence 89999999997 566666555544444333 45555555655554443 456777888888899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhccccCCCcccc-------ccCc-cchHHHHHH------------HHHhh---hhHHhhh
Q 019502 163 SAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV-------DFKK-VDWRGYFNS------------MFWNL---NYWDKAS 219 (340)
Q Consensus 163 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~------------~~~af---~G~e~~~ 219 (340)
+.....+++.+..++.++.-+.. +.++.++. ..++ ....+.... .+|+- .|.....
T Consensus 164 v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a 242 (416)
T PF01235_consen 164 VSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHH
Confidence 99999999888777665543321 22222211 0111 111111111 11221 1666777
Q ss_pred hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cc-cccchHHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 019502 220 TLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS-SE-WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGL 297 (340)
Q Consensus 220 ~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (340)
+-+.|+++|.|+--.+++-..+-..+.=.+..++++..-.+.. .+ ....-....++...+++...++.+++++..+++
T Consensus 243 ~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTT 322 (416)
T PF01235_consen 243 HAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTT 322 (416)
T ss_pred HHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 7788999998765555554444343333344444433322111 11 122234556666678889999999999999999
Q ss_pred HHHHhhhhhHHHHHhh
Q 019502 298 FEAEMSGDAFQLLGMS 313 (340)
Q Consensus 298 ~~~~~~~~sR~l~~~a 313 (340)
+.++.+..-|.+.-+.
T Consensus 323 ilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 323 ILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999988888876655
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.44 E-value=1.8e-11 Score=113.84 Aligned_cols=277 Identities=17% Similarity=0.148 Sum_probs=192.8
Q ss_pred cCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-----hhhhH
Q 019502 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-----YVIWI 90 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg-----~y~~~ 90 (340)
.+|..|+++..+-.++.++| |++++|.++++ .|+...++..++.+++ ...++....+.-+.++.-.| .-+..
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~-lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQ-LGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHh-CchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 47889999999999999999 99999999988 8877656666666664 77777777787777777777 66778
Q ss_pred HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhh-----hhHHHHHHHHHHHHHHHHHhcchhHHHHhH
Q 019502 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL-----IARIPALLGITGALTYLNYRGLHIVGFSAV 165 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (340)
+++||++...++++...+.....+..+....++-+..+++..... ...+...+. .+.....-+...+...++..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~-~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFG-LIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHH-HHHHHHHHCCCcchhHHHHH
Confidence 899998887788888888877778888888888888777643211 122222122 22222222555566677776
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCcc---ccccCccch-HHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHH
Q 019502 166 SLLVFSLCPFVVMGILSIPRIKPRRWL---VVDFKKVDW-RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~ 241 (340)
...+..+.........+..+....+.. ....++... ...+....|+|.|....+.+...+|+|+| ++|+.+++..
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~ 269 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYI 269 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHH
Confidence 666666655555556666544222111 111112222 34556678999999999999999999977 9999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 019502 242 LVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI-GGFWLKWWIQAASAMSNLGLFEAEMSG 304 (340)
Q Consensus 242 i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (340)
+.+.+|+..+...+.+.+++..++ +.... .+.|+....++.+.+-.+++..-+..-
T Consensus 270 ~~~~~y~~vai~GY~aFG~~~~~~-------il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~p 326 (437)
T KOG1303|consen 270 IVTFLYFPVAIIGYWAFGDSVPDN-------ILLSLQPPTWLIALANILIVLHLIGSYQIYAQP 326 (437)
T ss_pred HHHHHHHHHHHhhhhhhccccchh-------hhhcccCchhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 999999999999999988754322 11122 356677777777776666655544333
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.42 E-value=1.3e-10 Score=105.79 Aligned_cols=292 Identities=12% Similarity=0.105 Sum_probs=197.6
Q ss_pred ccCCcccchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------CCch
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-------NGGY 86 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~-------~Gg~ 86 (340)
+.++.+|.+|+++.+.+.-+| | +-+....+.. +||++..| +|+.++ +...+.+.=+-|+.+|.+ .||.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFW-MWi~Al-~Gmat~f~E~~La~~Yr~kd~~G~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFW-MWIVAL-FGMATKFAESTLAQKYRVKDKDGEYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHH-HHHHHH-HHHHHHHHHHHHHhheeEeCCCCCCcCCh
Confidence 568899999999999999999 6 6677777777 89987433 455565 477777777778887752 3789
Q ss_pred hhhHHhhhC-chhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHh
Q 019502 87 VIWISSAFG-PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (340)
Q Consensus 87 y~~~~~~~G-~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (340)
-+|.++.+| |+.|.+.+......+- ....+++...++.+++.++ .+++..++++.++..++...|+|..+++.
T Consensus 135 ~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~v~ 209 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAKVS 209 (452)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 999999998 7888888876666666 5788888888888888775 46788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCcccc-------ccCc----cchHH-----HHHH----HHHhhh---hHHhhhhh
Q 019502 165 VSLLVFSLCPFVVMGILSIPRIKPRRWLVV-------DFKK----VDWRG-----YFNS----MFWNLN---YWDKASTL 221 (340)
Q Consensus 165 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~-------~~~~----~~~~~-----~~~~----~~~af~---G~e~~~~~ 221 (340)
....++..+..++..+.-+.. +.++.++. ...+ .++.+ .+.. ..|+-- |.....+.
T Consensus 210 ~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaA 288 (452)
T COG1115 210 SKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAA 288 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHH
Confidence 999988887666544433221 11111111 0100 11111 1100 112211 44555566
Q ss_pred hhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 019502 222 AGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSE--WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE 299 (340)
Q Consensus 222 ~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
+.++++|.|+=-..++-..+-..+.=....++++..-.++.-+ +...-....++...|++...++.+.+.+-.++++.
T Consensus 289 aA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIl 368 (452)
T COG1115 289 AAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTIL 368 (452)
T ss_pred hhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 6788888776544444443323333333344443333222222 23334555667778899999999999999999999
Q ss_pred HHhhhhhHHHHHhhhcC
Q 019502 300 AEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 300 ~~~~~~sR~l~~~a~d~ 316 (340)
++++..=|.+.-+..++
T Consensus 369 g~yyyge~~~~fl~~~k 385 (452)
T COG1115 369 GWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99988888877776665
No 55
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.42 E-value=2.3e-10 Score=105.78 Aligned_cols=288 Identities=11% Similarity=0.104 Sum_probs=181.6
Q ss_pred CCcccchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CC----Cchhh
Q 019502 18 SPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP---EN----GGYVI 88 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p---~~----Gg~y~ 88 (340)
++++|.+|+++...+..+| | +.+.+..+.. +||++..| +++.++ +.....+.-.-++.++. ++ ||...
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFW-MWI~al-lGm~~~~~e~~L~~~yr~~~~~g~~~GGP~y 120 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFW-MWVTAF-IGMATKFVESTLAQKYRERDADGVFRGGPMY 120 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHH-HHHHHH-HHHHHHHHHHHHHHHeeeeCCCCCEecChHH
Confidence 4569999999999999999 7 8899888776 88886332 344444 35555555555555554 22 34447
Q ss_pred hHHhhhC-chhHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHH
Q 019502 89 WISSAFG-PFWGFQEGFWKWLSG-VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (340)
Q Consensus 89 ~~~~~~G-~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (340)
|.++.++ |+.|.+.+.. .+.| ......+....++.++..++ .+.++.++++.++..++...|+|..+++...
T Consensus 121 yi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~ 194 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKISSV 194 (425)
T ss_pred HHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 8887765 8888888877 4444 45567777888887775442 3567777788888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccc-------cCc-cchHHHHH-----H-------HHHhh---hhHHhhhhhhh
Q 019502 167 LLVFSLCPFVVMGILSIPRIKPRRWLVVD-------FKK-VDWRGYFN-----S-------MFWNL---NYWDKASTLAG 223 (340)
Q Consensus 167 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-------~~~-~~~~~~~~-----~-------~~~af---~G~e~~~~~~~ 223 (340)
..++.....+...+.- ...+.++..|.. .++ ....+... . ..|+- .|.....+-+.
T Consensus 195 lvP~m~~~Y~~~~l~i-i~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a 273 (425)
T TIGR00835 195 VVPFMALLYVIMALYI-IIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAA 273 (425)
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHh
Confidence 9998887766544422 222333333221 111 11111111 1 11221 15566667788
Q ss_pred hccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 019502 224 EVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSL---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300 (340)
Q Consensus 224 e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
|+++|.|+=-.+++-..+-..+.=.+..+++...-.++ ..+ ...-..+.++...+++...++.+..++..++++.+
T Consensus 274 ~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~-g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~ 352 (425)
T TIGR00835 274 QVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS-GAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIG 352 (425)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88999876555555544433333334444333322222 111 12223344555567788899999999999999999
Q ss_pred HhhhhhHHHHHhhhcC
Q 019502 301 EMSGDAFQLLGMSEMG 316 (340)
Q Consensus 301 ~~~~~sR~l~~~a~d~ 316 (340)
+.+..-+.+.-+-+++
T Consensus 353 ~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 353 WYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9988888876664433
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.24 E-value=1.7e-09 Score=102.73 Aligned_cols=235 Identities=10% Similarity=-0.011 Sum_probs=136.5
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHH----HHHhccCCCCCch-------
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALIT----AELATSFPENGGY------- 86 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~----~el~~~~p~~Gg~------- 86 (340)
++-+..+..+-...+.+| |++++|.+.+. .|....++..++.+++ +..+++.. -|..++.|+++-.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~-~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQ-LGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHH-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 334444444448888899 99999999988 7777666666666654 55555544 4566667664321
Q ss_pred -hhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhH
Q 019502 87 -VIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (340)
Q Consensus 87 -y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (340)
.+...+.+||+.+.+.....++.....+..+....++-+..+.+..+......+...+.+. ...++..+...++..
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~---~~~i~sl~~l~~~S~ 198 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCAT---TVFIPSFHNYRIWSF 198 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHH---HHHccCHHHHHHHHH
Confidence 2234456899888877655554444444344333333333332222222222222222222 223444556666555
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCccccccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHH
Q 019502 166 SLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i 242 (340)
+.....+...+.+.+....+.++...... .+.++...+ ..++|+|.|.-....+-.|||||+ ++++....+...
T Consensus 199 ig~~~tl~~av~i~i~~i~~~~~~~~~~~--~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~ 275 (473)
T PLN03074 199 LGLLMTTYTAWYMTIAALSHGQVEGVKHS--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLY 275 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCC--CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHH
Confidence 54444333323333333333222222111 122343333 347999999999999999999995 599998888998
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 019502 243 VVSSYLIPLLAGTGGLTSL 261 (340)
Q Consensus 243 ~~i~y~l~~~~~~~~~~~~ 261 (340)
...+|+...+..+...+++
T Consensus 276 v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 276 VLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHHHHHHHHHeeeeeechh
Confidence 8889888888877777764
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.21 E-value=1.5e-08 Score=88.78 Aligned_cols=273 Identities=12% Similarity=0.009 Sum_probs=184.8
Q ss_pred HHHHhhhhhcccccCchhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHH
Q 019502 26 LIALIFYEVSGGPFGVEDSVKAG---GGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQE 102 (340)
Q Consensus 26 ~~~l~~~~~~ggi~~~~~~~~~~---~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~ 102 (340)
..+..++.++|+.|.....+-+- -|. .+.++.++.+++ ....+....++++++. +...-++.++.+||+.+.+-
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vl-f~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~ 84 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVL-FTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKII 84 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHH-HHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHH
Confidence 34455667889777766655442 232 246778888875 7788999999999994 44688999999999999998
Q ss_pred HHHHHHHHhhhHHHHHHH-HHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhc-chhHHHHhHHHHHHHHHHHHHHHH
Q 019502 103 GFWKWLSGVLDNALYPVL-FLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRG-LHIVGFSAVSLLVFSLCPFVVMGI 180 (340)
Q Consensus 103 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~i 180 (340)
.....+. .+..+++..+ .++.+++.++ .|.|+.+++++.....+..++ .+..-+++.+..++.++.+..+..
T Consensus 85 d~~iif~-lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~ 158 (349)
T COG3949 85 DIIIIFF-LFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTL 158 (349)
T ss_pred HHHHHHH-HHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHH
Confidence 8776655 4444444444 4457777764 456666677777766666666 888888888888777766443333
Q ss_pred HHhccccCCCccccccCccchHHHHHH--HHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019502 181 LSIPRIKPRRWLVVDFKKVDWRGYFNS--MFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGL 258 (340)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~ 258 (340)
.-....+.+.+........+|...... .+-..........+++|+|++ |+..++.+.+-.+.+++..+..+......
T Consensus 159 ~~~f~~~~~~a~~~~~~~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~ 237 (349)
T COG3949 159 SFQFTNLGNAAQIVLTKQGNWKASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALY 237 (349)
T ss_pred HHHHhhccchhhhcCCcCCChHHHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhc
Confidence 222212222222222234555543321 111223555667888999995 78899999999999999888888877655
Q ss_pred CCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019502 259 TSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (340)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 311 (340)
+ ++.+.+-|..++.+... +....++.+......+.+..+.+++.+|-+.+
T Consensus 238 ~--~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l~~r~~s 287 (349)
T COG3949 238 D--KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGLASRLTS 287 (349)
T ss_pred c--hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4 46667778998888765 55777888888888888887777775555443
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.11 E-value=8.6e-09 Score=98.20 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=149.9
Q ss_pred hhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHH
Q 019502 24 LPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQE 102 (340)
Q Consensus 24 ~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~ 102 (340)
.+..+-..++.+| |++++|....+ .|....++..++.+.+ .........+.+++. +..+..+.+++++||+...++
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~-~G~v~giillil~a~l-s~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANS-SGLVMAMIYLIIITAM-TIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHHHH
Confidence 5566667777899 99999999887 7776555555555553 555556666666653 334677778888999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhchhhhh-hh------hHH-HHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 103 GFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL-LI------ARI-PALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
.....+.....+.++....++.+..+++..+. .+ .+. ..........-+...+.++..+++..+.....+..
T Consensus 140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~ 219 (467)
T PTZ00206 140 AATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYL 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888766642110 00 011 11111222233334555666666554443322222
Q ss_pred HHHHHHHHhccccCCCcccc-----ccC-------ccchHHHHHHHHHhhhhHHhhhhhhhhccCC-CCcHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKPRRWLVV-----DFK-------KVDWRGYFNSMFWNLNYWDKASTLAGEVENP-SKTFPKALLGAVV 241 (340)
Q Consensus 175 l~~~~i~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p-~k~~p~a~~~~~~ 241 (340)
.+..++....+..+++..+. +.. ..+....++...|+|.+.......-+|+||| +|+..|....+..
T Consensus 220 vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~ 299 (467)
T PTZ00206 220 VIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMG 299 (467)
T ss_pred HhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHH
Confidence 22222222222112111110 000 1123344567889999999999999999986 3668899999999
Q ss_pred HHHHHHHHHHHHHHhccCCC
Q 019502 242 LVVSSYLIPLLAGTGGLTSL 261 (340)
Q Consensus 242 i~~i~y~l~~~~~~~~~~~~ 261 (340)
+..++|.+..+..+...+++
T Consensus 300 i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 300 MCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHhhhhccccc
Confidence 99999999999999888765
No 59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.09 E-value=3.2e-08 Score=91.22 Aligned_cols=283 Identities=14% Similarity=0.106 Sum_probs=174.1
Q ss_pred CCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHH----HHHHHHHHhccCCCC---------
Q 019502 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIP----EALITAELATSFPEN--------- 83 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~----~~~~~~el~~~~p~~--------- 83 (340)
++..|..+...=-+..++| |++++|.+... +|.....+.-.+.+.+ +.. ...|.-+++++....
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~-sG~~~G~~~~~~i~~l-~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKN-SGLVMGLLLTVFIGFL-CTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHh-cchHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 4568888888888888999 99999999988 6655444444443432 222 233445566654221
Q ss_pred ---CchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhh-hhhhHH-HHHHHHHHHHHHHHHhcch
Q 019502 84 ---GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARI-PALLGITGALTYLNYRGLH 158 (340)
Q Consensus 84 ---Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~g~~ 158 (340)
.+.+.| .|.+||+..+++.....+++...+.++....++-++++.+... ..+..- .+.+.+.....+...+.+|
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 112225 5779999999999999999999998888888877877776222 122222 2212222223333334444
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccccCCCccccccCccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHH---HH
Q 019502 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFP---KA 235 (340)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p---~a 235 (340)
..+-+..+.-++.++.+.++....+....+..-.+...+..+|...+..++|+|-|......+-+++|+|+ ++| +.
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g~~gV 279 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPGPFGV 279 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChh-hcCCccch
Confidence 44444444444444444433333322221111111111245677778899999999999999999999995 588 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019502 236 LLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (340)
Q Consensus 236 ~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 311 (340)
+-.++.++.++|....+..+...+++.-+.-+-.+. ..+++..+.+...++.+-+.--.++-.-++++.
T Consensus 280 Ln~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP-------~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 280 LNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP-------QEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC-------ccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 999999999999999999999998765332111111 123444444455555554444555555566554
No 60
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.76 E-value=1.5e-10 Score=108.86 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=171.4
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCchhhhHHhhh
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP---ENGGYVIWISSAF 94 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p---~~Gg~y~~~~~~~ 94 (340)
||-|+++..+..++.++| |++++|...++ .|....++..++.+. ..........|.....| +.....+.+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~~g~i~l~~~~~-~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWVLGIILLVLVAL-LSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhhhhhHHHHHHHH-HHHHhhhhhhccccccccccccccccccccccc
Confidence 678999999999999999 99999999988 676554554555555 36777777777777654 3445555668899
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhh--hhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL--LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 172 (340)
||+.+.+......+........+....++.+..+.+.... ........++...+...+.. .|..+.+........+
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~--~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSF--LKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccc--cchhhHHHHHhhhhhh
Confidence 9999999998888887777777777777777776664321 11222221222222222221 2333333333222222
Q ss_pred HHHH--HHHHHHhccccCC---Ccccc-ccC---ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCC--cHHHHHHHHHH
Q 019502 173 CPFV--VMGILSIPRIKPR---RWLVV-DFK---KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSK--TFPKALLGAVV 241 (340)
Q Consensus 173 ~~l~--~~~i~~~~~~~~~---~~~~~-~~~---~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k--~~p~a~~~~~~ 241 (340)
..+. ...+......... +.... ... ..++...++...++|.+......+.+|+|||+| +..|....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 2211 1111111111111 11111 111 124455667888999999999999999999865 34499999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcch-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 019502 242 LVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGF-WLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (340)
Q Consensus 242 i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 314 (340)
+..++|.+.....+...+++.-+ .+...+.++ +...+..+...+..+.+.--......+.+.+.-+
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~-------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQG-------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecc-------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 99999999999988877754211 222222222 3444455455555544444444444555544443
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.76 E-value=3e-05 Score=74.36 Aligned_cols=285 Identities=10% Similarity=-0.021 Sum_probs=157.4
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~--i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
-.|+++++......+++..+ ...+.++.... .|..+..+.+. ..+.+.....+.-+.+..++. +.-..++|.++
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~ 115 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKA 115 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 46999999988888888877 35677766555 55433222111 111111222344455556655 33479999999
Q ss_pred hhCch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 93 AFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 93 ~~G~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
-||++ ...+.+....+........+....+..++..++. + . ...+.+...+...+....|.|...+...+-..+.
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-~-~--~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~ 191 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-S-Y--LTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVM 191 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-H--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99954 5666776666665666667777777777766641 1 1 1111123344667778888888887777666665
Q ss_pred HHHHHHHHHHHhcccc-CC----Ccc---cc--c-cCccch-HHHHHHHHHhhh-----hHHhhhhhhhhccCCCCcHHH
Q 019502 172 LCPFVVMGILSIPRIK-PR----RWL---VV--D-FKKVDW-RGYFNSMFWNLN-----YWDKASTLAGEVENPSKTFPK 234 (340)
Q Consensus 172 ~~~l~~~~i~~~~~~~-~~----~~~---~~--~-~~~~~~-~~~~~~~~~af~-----G~e~~~~~~~e~k~p~k~~p~ 234 (340)
++..++..+..+.+.. .+ +.. +. . ..+.++ ...+...++... +..-...-.-..||+ |+..|
T Consensus 192 ~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~-~~a~~ 270 (471)
T TIGR02119 192 FTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS-KAMHR 270 (471)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH-HHHhh
Confidence 5544443333332211 00 000 00 0 001111 111111111111 221111223345774 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 019502 235 ALLGAVVLVVSSYLIPLLAGTGGL-TSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (340)
Q Consensus 235 a~~~~~~i~~i~y~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 308 (340)
+...+..+...++....+...... -..+..+++..+..+.....+++...++....+.+..++..+.+.+.+=.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 271 AMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSST 345 (471)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988776666555444432221 11223334556677777778888888888888888888777776655533
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.73 E-value=3.5e-05 Score=74.08 Aligned_cols=282 Identities=10% Similarity=-0.056 Sum_probs=154.6
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~--i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
-.|+++++-......++..+ ..++.++.... .|..+.+.+.. ....+.....+.-+.++.++. +.-..++|.++
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~ 116 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRA 116 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 47999988887777777766 35677666555 45433222111 111111223444556666665 34479999999
Q ss_pred hhCch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 93 AFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 93 ~~G~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
.||++ .....+....+..+...+.+....+..++.+++ .+. ...+.+...+...+....|.|...+...+-.++.
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~~---~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~ 192 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-ISY---ETGLLIFGITVALYTAFGGFRAVVLTDALQGIVM 192 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99865 566666666666666777788888888877764 111 1111233344567777888888777666655555
Q ss_pred HHHHHHHHHHHhccc-------------cCCCccccccCc-cchHHHHHHHHHhhhhHHhhhhhhh---hccCCCCcHHH
Q 019502 172 LCPFVVMGILSIPRI-------------KPRRWLVVDFKK-VDWRGYFNSMFWNLNYWDKASTLAG---EVENPSKTFPK 234 (340)
Q Consensus 172 ~~~l~~~~i~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~af~G~e~~~~~~~---e~k~p~k~~p~ 234 (340)
++..+++.+..+... +++.+.+.+.++ .++.......+....|.-..++... ..||+ |+..|
T Consensus 193 ~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~~ 271 (483)
T PRK09442 193 LVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALHR 271 (483)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHHH
Confidence 544443333222111 011111111111 1222222211111111111122111 26775 77999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---cCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 019502 235 ALLGAVVLVVSSYLIPLLAGTGG---LTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (340)
Q Consensus 235 a~~~~~~i~~i~y~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 307 (340)
+..++.....++++......... .|+ .++++..+..+.+...++++..++....+.+..++..+.+.+.+=
T Consensus 272 ~~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss 345 (483)
T PRK09442 272 GIIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776666655444433221 232 223455667777788899988888888888888777666655443
No 63
>PRK11375 allantoin permease; Provisional
Probab=98.67 E-value=2e-05 Score=75.50 Aligned_cols=297 Identities=9% Similarity=0.041 Sum_probs=150.0
Q ss_pred ccccCCcccchhHHHHhhhhhcc-cccCchh-hhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-chhhhH
Q 019502 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVED-SVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWI 90 (340)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~-~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~G-g~y~~~ 90 (340)
..++||+-++++.+.+=++.... +.+...+ .+..+.+....+++.++..+ +.+...+-.+..=++.| +.....
T Consensus 20 vp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~----i~~~~~~l~g~~G~~~Gl~~~v~s 95 (484)
T PRK11375 20 KTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAF----FIAAVMVLNGAAGSKYGVPFAMIL 95 (484)
T ss_pred CCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHH----HHHHHHHHhcccccccCCChhHhH
Confidence 45678889999999887776655 3332222 22222333333344444333 23333333333333433 467788
Q ss_pred HhhhCchhHHHHHHHHH-HHHhhhHHHHHHHHHHHHH----Hhchhhh----------hhhhHHHHHHHHHHHHHHHHHh
Q 019502 91 SSAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLK----HSLPIFN----------LLIARIPALLGITGALTYLNYR 155 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 155 (340)
|..||++-+.+.+.... +..+...+.+....++.++ .++|.+. .+.+.++..+++.++.+.+.+.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 88999887777777663 4555556666655555554 3333211 1122344445666667777889
Q ss_pred cchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCCc---ccccc---Cccch--HHHHHHHHHhhh-hHHhhhhhhhhcc
Q 019502 156 GLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRW---LVVDF---KKVDW--RGYFNSMFWNLN-YWDKASTLAGEVE 226 (340)
Q Consensus 156 g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~---~~~~~---~~~~~--~~~~~~~~~af~-G~e~~~~~~~e~k 226 (340)
|.|...+++.+..++..+..+...+..+...+.+.. .+.+. +...| ...+...+=.+. +.-..+.+++..|
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k 255 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAH 255 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccC
Confidence 999999999988888776666555544443322211 11110 01112 112211111222 3345677888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 019502 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE-AEMSGD 305 (340)
Q Consensus 227 ~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (340)
|+ |+.-++.+++..+...+...............-.....+|.. +..+........+..+..+++..++-. ...++.
T Consensus 256 ~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~-i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~ 333 (484)
T PRK11375 256 SF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD-IVQRWDSLFASFFAVLVILMTTISTNATGNIIPA 333 (484)
T ss_pred Ch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 86 556677777776666554333322211110000011233433 333333344444444555555555533 344444
Q ss_pred hHHHHHhhhcCCchHH
Q 019502 306 AFQLLGMSEMGMLPAI 321 (340)
Q Consensus 306 sR~l~~~a~d~~lP~~ 321 (340)
+--+ ...+||+
T Consensus 334 ~~~l-----~~l~pk~ 344 (484)
T PRK11375 334 GYQI-----AALAPTK 344 (484)
T ss_pred HHHH-----HHhCcCc
Confidence 4333 4556654
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.64 E-value=4.3e-05 Score=71.90 Aligned_cols=281 Identities=12% Similarity=0.034 Sum_probs=160.3
Q ss_pred CCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhC
Q 019502 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G 95 (340)
.|+++++......+++..+ ...+.++.... .|....+ +.+...+..+..++.+.+.-++.+ .-..++|.++-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGF--YELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhC
Confidence 5889999888888887777 46677776655 4543322 112222234456667777666654 4479999999999
Q ss_pred c-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 96 P-FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 96 ~-~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
+ ....+.+....+..+...+.+....+..++..++. + ......+...+...+....|.|...+...+=..+.++.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-~---~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-D---LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILG 153 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-h---HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 8 56666777777777888888888888888877651 1 12222233445567778888888776666555554443
Q ss_pred HHHHHHHHhcccc-CC-------Cccc-----cc-----cC----ccchHHHHH-H-HHHhhhhHHhhhhhhh---hccC
Q 019502 175 FVVMGILSIPRIK-PR-------RWLV-----VD-----FK----KVDWRGYFN-S-MFWNLNYWDKASTLAG---EVEN 227 (340)
Q Consensus 175 l~~~~i~~~~~~~-~~-------~~~~-----~~-----~~----~~~~~~~~~-~-~~~af~G~e~~~~~~~---e~k~ 227 (340)
.+++.+..+.+.. .+ +..+ .+ .. ...|.-... . ......+ ....+.. -.||
T Consensus 154 ~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~qR~~a~ks 231 (407)
T TIGR00813 154 TFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW--TNQVIVQRCLAAKS 231 (407)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh--cCHHHhhHHHhcCC
Confidence 3333332222111 00 0000 00 00 011111000 0 0000001 1111121 3466
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhc---cCC--CCc-----ccccchHHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 019502 228 PSKTFPKALLGAVVLVVSSYLIPLLAGTGG---LTS--LSS-----EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGL 297 (340)
Q Consensus 228 p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~---~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (340)
+ |+.+|+...+.....+.+....+..... .++ .+. .+++..+..+.+...++++.-++.+..+.+..++
T Consensus 232 ~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST 310 (407)
T TIGR00813 232 A-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMST 310 (407)
T ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHh
Confidence 4 7899999998776666655444333322 221 111 2455667778888889998888888888888887
Q ss_pred HHHHhhhhhHHH
Q 019502 298 FEAEMSGDAFQL 309 (340)
Q Consensus 298 ~~~~~~~~sR~l 309 (340)
..+.+.+.+-.+
T Consensus 311 ~~s~l~a~ss~~ 322 (407)
T TIGR00813 311 LSSQLNSASTVF 322 (407)
T ss_pred hhhhHHHHHHHH
Confidence 777666655443
No 65
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.60 E-value=3.7e-05 Score=71.56 Aligned_cols=276 Identities=13% Similarity=0.029 Sum_probs=164.8
Q ss_pred hhhhhcc-cccCchhhhhhcCChH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHH
Q 019502 30 IFYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106 (340)
Q Consensus 30 ~~~~~~g-gi~~~~~~~~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~ 106 (340)
.++--.| |-+..|+.+.+.+|.. ...+++++.++. ++..-. ++... .+|+.++..+| .||+.+.+.....
T Consensus 12 LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~--lP~Lgv---ia~~~-~~~~~~~l~~~-v~~~f~~if~~~i 84 (427)
T PF05525_consen 12 LFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVG--LPLLGV---IAVAK-SGGGIEDLASR-VGPKFALIFTILI 84 (427)
T ss_pred HHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHH--HHHHHH---HHHhh-cCCCHHHHhcc-cCcHHHHHHHHHH
Confidence 3444467 7667777775555554 344556665542 222211 11111 33466666655 6787777766433
Q ss_pred HH--HHhhhHHHHHHHHHHH-HHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHh
Q 019502 107 WL--SGVLDNALYPVLFLDY-LKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSI 183 (340)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~ 183 (340)
.+ +=.+..+-.+...-|. +..++|. ++.+..++..+++..+..++.++.-|..+++-++..++.++.+.++++.++
T Consensus 85 ~l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i 163 (427)
T PF05525_consen 85 YLSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGI 163 (427)
T ss_pred HHHHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2223333333333332 3344443 345677788889999999999999999999999999999999999999888
Q ss_pred ccccCCCccccc-cCccchHHHH--------HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHH----HHHHH
Q 019502 184 PRIKPRRWLVVD-FKKVDWRGYF--------NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVS----SYLIP 250 (340)
Q Consensus 184 ~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i----~y~l~ 250 (340)
.+...+...+.. ..+..+...+ ..+-..|...-...--....||+ |+..|....+-.+.++ .|...
T Consensus 164 ~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL 242 (427)
T PF05525_consen 164 FSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGL 242 (427)
T ss_pred HcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765433222211 1112222211 11223333333333333344443 4455555555444444 44444
Q ss_pred HHHHHhccCC-CCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 019502 251 LLAGTGGLTS-LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (340)
Q Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 314 (340)
...-...-+. ++-.+....+..+.+++.|+....++.+.+.++|+.+..+...+++....+...
T Consensus 243 ~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 243 AYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433222222 222344567888999999999999999999999999999999999998876654
No 66
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.55 E-value=5.4e-05 Score=70.48 Aligned_cols=276 Identities=12% Similarity=0.028 Sum_probs=157.1
Q ss_pred HHhhhhhcc-cccCchhhhhhcCChHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHH
Q 019502 28 ALIFYEVSG-GPFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGF 104 (340)
Q Consensus 28 ~l~~~~~~g-gi~~~~~~~~~~~g~~~--~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~ 104 (340)
++.++--.| |-+..|+.+.+.+|..+ ..+++++.++ .++.-- -++-.. .+|+..+..+| .||+.+.+...
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~V--glPlLg---iiava~-~~g~~~~l~~r-v~~~f~~~f~~ 87 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAV--GLPVLT---VVALAK-VGGGVDSLSTP-IGKVAGVLLAT 87 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHH--HHHHHH---HHHHhh-cCCCHHHHhhh-cchHHHHHHHH
Confidence 334454477 76677777755555543 3445555554 232221 222222 23577777766 67777776544
Q ss_pred HHHH--HHhhhHHHHHHHHHHH-HHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHH
Q 019502 105 WKWL--SGVLDNALYPVLFLDY-LKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (340)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~ 181 (340)
...+ +=.+..+-.+...-|. +..++|+ + ....++..+++..+..++.++.-|..+++.++..+..++.+.++++.
T Consensus 88 ~i~l~IGP~~aiPRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~ 165 (439)
T PRK15433 88 VCYLAVGPLFATPRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVA 165 (439)
T ss_pred HHHHHHhhccccCCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3222 2122233222222232 3334442 1 24556778889999999999999999999999999999999998988
Q ss_pred HhccccCCCccccc-cCccchHHHH--------HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHH----HHHHHHHHH
Q 019502 182 SIPRIKPRRWLVVD-FKKVDWRGYF--------NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA----VVLVVSSYL 248 (340)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~----~~i~~i~y~ 248 (340)
++.+...+...+.. .....+...+ ..+-..|...-..+--....||+ |++.|..+.+ .....+.|.
T Consensus 166 ~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~ 244 (439)
T PRK15433 166 AIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYL 244 (439)
T ss_pred HHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88764322111101 1011122111 11222333332222223346664 4455544444 444444555
Q ss_pred HHHHHHHhccCC-CCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 019502 249 IPLLAGTGGLTS-LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (340)
Q Consensus 249 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 313 (340)
....+-....+. ++.++...-+....+...|++...++.+.+.++|+.+..+...++++...+.-
T Consensus 245 gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~ 310 (439)
T PRK15433 245 ALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV 310 (439)
T ss_pred HHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 544443322221 11223344566677788899999999999999999999999999999876653
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.44 E-value=0.00061 Score=63.96 Aligned_cols=224 Identities=11% Similarity=-0.060 Sum_probs=120.3
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
++||+ ++++....-.+..+. ..+...+.+..+.+....+++.++..++ ........+..+.++-- ......|..|
T Consensus 6 ~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i-~~~~~~l~~~~G~k~G~--~~~v~sR~~F 81 (404)
T PRK11017 6 QSARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLL-LGIYTAALGYIGAKTGL--STHLLARFSF 81 (404)
T ss_pred HHHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCc--CHHHHHHHHh
Confidence 44566 888865554443322 2222222233323444444444444332 22233333344443322 4666778889
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
|++.+.+.+....+..+...+.+....+..++..++ .+ .....+++.++.......|.|...+++++..+...+.
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~----~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~ 156 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD----INLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALL 156 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777777777777766666555443 11 1113345556667777889999999999888777665
Q ss_pred HHHHHHHHhccccC-CCcc-ccccCccchHHHHHHH-HHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q 019502 175 FVVMGILSIPRIKP-RRWL-VVDFKKVDWRGYFNSM-FWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (340)
Q Consensus 175 l~~~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l 249 (340)
++...+..+.+.+. +... ....++..|...+... -+...+.-..+.++++.|+|++ .-.+...+..+...+..+
T Consensus 157 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~~lg~~i~~~~~~~ 233 (404)
T PRK11017 157 GGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLATMVAFFLGNSLMFI 233 (404)
T ss_pred HHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehhHHHHHHHHHHHHH
Confidence 55444433332221 1111 1111123444444322 1223445567778888888644 445666665554443333
No 68
>PRK12488 acetate permease; Provisional
Probab=98.41 E-value=0.00049 Score=67.20 Aligned_cols=153 Identities=11% Similarity=-0.038 Sum_probs=95.6
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
-.|+++++...+...++..+ ...+.++..+. .|....++ .+...+......+.+++--++... -..++|.++-|
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~~--~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf 140 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLLY--ALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRL 140 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHHH--HHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHc
Confidence 46999999998888887777 45677776665 55443211 111111122233445554454433 36888888888
Q ss_pred C-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 95 G-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 95 G-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
| |....+.+....+..+.....+....+..++.+++. + . ...+.+...+...+....|.|...+.+.+=.++.++
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-~-~--~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~ 216 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-S-Y--LYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLS 216 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-H--HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 7 678888888888777788888888888877776541 1 1 111223344556677788999877777666555554
Q ss_pred HHHH
Q 019502 174 PFVV 177 (340)
Q Consensus 174 ~l~~ 177 (340)
..++
T Consensus 217 ~~i~ 220 (549)
T PRK12488 217 GTSF 220 (549)
T ss_pred HHHH
Confidence 4433
No 69
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.39 E-value=0.00035 Score=65.16 Aligned_cols=198 Identities=12% Similarity=-0.036 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhh
Q 019502 55 LLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL 134 (340)
Q Consensus 55 ~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (340)
+++.++.-++ .....-..++++.+..-+ +..-.|.-||++-+.+.....++.++...++.....++..... +
T Consensus 55 i~aillG~ll-G~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~---- 126 (442)
T COG1457 55 LLAILLGNLL-GGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T---- 126 (442)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----
Confidence 3444443332 333344445555544332 4445566799999999999999988888888888777763333 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC--ccccccCccchHHHHHHHHHhh
Q 019502 135 LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR--WLVVDFKKVDWRGYFNSMFWNL 212 (340)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~af 212 (340)
+.+..+..++.-++.+...+.|.|...+++++..+.............+...+..+ +.+....+.+|...++.++=.+
T Consensus 127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~ 206 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSF 206 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHH
Confidence 34555555677778888899999999999999888877766665554443222111 1111222445555555433223
Q ss_pred hh-HHhhhhhhhhccCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 019502 213 NY-WDKASTLAGEVENPS-KTFPKALLGAVVLVVSSYLIPLLAGTGGLTS 260 (340)
Q Consensus 213 ~G-~e~~~~~~~e~k~p~-k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~ 260 (340)
.. --.++.++.-.|+|+ ++.-.+...+.........+...+.....+.
T Consensus 207 ~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~ 256 (442)
T COG1457 207 ASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGN 256 (442)
T ss_pred HhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33 345667777777764 1233444444444444444444444444443
No 70
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.38 E-value=0.0005 Score=66.13 Aligned_cols=285 Identities=12% Similarity=0.005 Sum_probs=151.1
Q ss_pred cccCCcccchhHHHHhhh-hhcc--cccCchhhhhhcCChHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCCchhhh
Q 019502 15 AKTSPKLTVLPLIALIFY-EVSG--GPFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIW 89 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~-~~~g--gi~~~~~~~~~~~g~~~~~~~~~--i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 89 (340)
..-.|+++.+ ..+++.. ...+ ..++.|+.... .|....++... +...+.....+--..+++ +.++.-..++|
T Consensus 34 ~~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~ 110 (493)
T COG0591 34 FLGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDF 110 (493)
T ss_pred hccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHH
Confidence 3457999999 5555443 3344 46788887776 55554332222 222233455555566666 44555689999
Q ss_pred HHhhhC-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchh---HHHHhH
Q 019502 90 ISSAFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAV 165 (340)
Q Consensus 90 ~~~~~G-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~ 165 (340)
.++-|| +....+.+....+......+.+....+..++..++ .+.....++ ....+..+....|.|. ++.+|-
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~---~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILI---GALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHH---HHHHHHHHHHHcChhHHHHHHHHHH
Confidence 999999 99999999999999999999999999988876666 332222333 3344444555555554 555555
Q ss_pred HHHHHHHHHHHHHHHHH---hccc-----cCCCcc-ccccC-ccchHHHHHHH------HHhhhhHHhhhhhhhhccCCC
Q 019502 166 SLLVFSLCPFVVMGILS---IPRI-----KPRRWL-VVDFK-KVDWRGYFNSM------FWNLNYWDKASTLAGEVENPS 229 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i~~---~~~~-----~~~~~~-~~~~~-~~~~~~~~~~~------~~af~G~e~~~~~~~e~k~p~ 229 (340)
....+.+..+.+..... +... ..++.. ..... ...+....... +..+..-...+..-. .|++
T Consensus 187 ~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~-~~~~- 264 (493)
T COG0591 187 LIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMA-AKSI- 264 (493)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhhhhh-hccH-
Confidence 54444443333332221 1000 011100 00000 11222222221 222223333333333 4444
Q ss_pred CcHHHHHHHHHHHHHHHHHHH----HHHHHhcc--CCC---CcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 019502 230 KTFPKALLGAVVLVVSSYLIP----LLAGTGGL--TSL---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300 (340)
Q Consensus 230 k~~p~a~~~~~~i~~i~y~l~----~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
|+.||..........+..+.. .+...... +++ ...+.+..+..+....+++|..-++....+.+..++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss 344 (493)
T COG0591 265 KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASS 344 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333333322222 11111111 111 122455678888888899998888777777777776666
Q ss_pred HhhhhhHH
Q 019502 301 EMSGDAFQ 308 (340)
Q Consensus 301 ~~~~~sR~ 308 (340)
.....+-.
T Consensus 345 ~ll~~ss~ 352 (493)
T COG0591 345 QLLVASSA 352 (493)
T ss_pred HHHhhhHH
Confidence 55555433
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.38 E-value=0.0015 Score=62.93 Aligned_cols=282 Identities=11% Similarity=0.049 Sum_probs=145.0
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHH-HHHHHHHHHHHHHhccC----CCCCchhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPL-IWSIPEALITAELATSF----PENGGYVIW 89 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~-~~~~~~~~~~~el~~~~----p~~Gg~y~~ 89 (340)
-.|+++++-...-..++..+ ...+.|+.... .|....+. ..+. +......+.+++--+++ ++.-..++|
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~---~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~ 109 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWI---AIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDF 109 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHH
Confidence 36999988877666666555 35666666555 45433221 1121 11222233344433322 233468999
Q ss_pred HHhhhCc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHH
Q 019502 90 ISSAFGP---FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (340)
Q Consensus 90 ~~~~~G~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (340)
.++-||+ ....+.+....+......+......+..++.+++. + ....+.+...+...+....|.|.+.+...+
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-~---~~~~iii~~~i~~~Yt~~GGl~av~~TD~i 185 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-D---YKTGLLIGALIIVIYTFFGGFLAVSWTDFV 185 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-c---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999984 45555555555555566677777777777766541 1 122222344556778888888887766655
Q ss_pred HHHHHHHHHHHHHHHHhcccc-CCC----c---ccc---ccCccchHHHHHHHHHhhhhHHhhhhhhh---hccCCCCcH
Q 019502 167 LLVFSLCPFVVMGILSIPRIK-PRR----W---LVV---DFKKVDWRGYFNSMFWNLNYWDKASTLAG---EVENPSKTF 232 (340)
Q Consensus 167 ~~~~~~~~l~~~~i~~~~~~~-~~~----~---~~~---~~~~~~~~~~~~~~~~af~G~e~~~~~~~---e~k~p~k~~ 232 (340)
=..+.++..+++.+..+.+.. .++ . .|. ..++.++........|.+ |.-..+++.. -.||+ |+.
T Consensus 186 Q~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~p~~~qR~~aaks~-k~~ 263 (487)
T TIGR02121 186 QGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWGL-GYFGQPHIIVRFMAIRSH-KEL 263 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHHH-HhccchHHHHHHHhcCCH-HHH
Confidence 555544433333332222211 000 0 010 011223333333222322 2222233332 24664 778
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccCC--C-CcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019502 233 PKALLGAVVLVVSSYLIPLL---AGTGGLTS--L-SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDA 306 (340)
Q Consensus 233 p~a~~~~~~i~~i~y~l~~~---~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (340)
.|+...+.....+.++...+ ......+. + +..+++..+..+.+...++++.-++....+.+..++..+.+.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~s 343 (487)
T TIGR02121 264 PKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSS 343 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887775443322221111 11111121 1 122344556667777788888888888888888888777777666
Q ss_pred HH
Q 019502 307 FQ 308 (340)
Q Consensus 307 R~ 308 (340)
=.
T Consensus 344 s~ 345 (487)
T TIGR02121 344 SA 345 (487)
T ss_pred HH
Confidence 44
No 72
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.38 E-value=6e-05 Score=70.86 Aligned_cols=283 Identities=13% Similarity=-0.043 Sum_probs=142.5
Q ss_pred CCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhC
Q 019502 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G 95 (340)
.|+++++...+..+++..| ..++.+..... .|....++ .+...+...+.++.+++--++. +.-..++|.++-||
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~--~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWY--AIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYG 80 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHH--HHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeee--ccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcC
Confidence 5889999888888887777 36677766655 45443221 1212212333444444444444 33479999999999
Q ss_pred chh--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 96 PFW--GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 96 ~~~--g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+.. ..+......+......+.+....+..++..++. + . .....+...+...+....|.|...+...+-..+.++
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-~--~-~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-P--Y-NTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMII 156 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----H-HHHHHHHHHHHHHTTCTT------SHHHHHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhccch-h--h-hHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHH
Confidence 888 666666666667777888888888888877751 1 1 222223444555677777888776555554444444
Q ss_pred HHHHHHHHHhccccC-----C---Cccc---cccCccch------HHHHHHHHHhhhhHHhhhhhhhh---ccCCCCcHH
Q 019502 174 PFVVMGILSIPRIKP-----R---RWLV---VDFKKVDW------RGYFNSMFWNLNYWDKASTLAGE---VENPSKTFP 233 (340)
Q Consensus 174 ~l~~~~i~~~~~~~~-----~---~~~~---~~~~~~~~------~~~~~~~~~af~G~e~~~~~~~e---~k~p~k~~p 233 (340)
..+++.+..+.+... + +..| ...++.++ .......+....|....+++..+ .||+ |+.+
T Consensus 157 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~-~~ar 235 (406)
T PF00474_consen 157 GAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSP-KTAR 235 (406)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHH-HHHH
T ss_pred HHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCCH-HHHH
Confidence 333333322221110 0 0001 00111111 11111101112233333554443 3554 6788
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHhccCC---CCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhh
Q 019502 234 KALLGAVVLVVSSYLIPL------LAGTGGLTS---LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (340)
Q Consensus 234 ~a~~~~~~i~~i~y~l~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (340)
|+...+.....+++.... .......|+ ++..+++..+..+.++..++++.-++....+.+..++..+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a 315 (406)
T PF00474_consen 236 KGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLA 315 (406)
T ss_dssp HHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhh
Confidence 888877655444443311 112222221 12334455778888888999998888888888888888888887
Q ss_pred hhHHH
Q 019502 305 DAFQL 309 (340)
Q Consensus 305 ~sR~l 309 (340)
.+-.+
T Consensus 316 ~ss~~ 320 (406)
T PF00474_consen 316 ISSIF 320 (406)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 77664
No 73
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.35 E-value=0.0008 Score=61.45 Aligned_cols=277 Identities=13% Similarity=0.056 Sum_probs=156.8
Q ss_pred hhHHHHhhhhhcc-cccCchhhhhhcCChH--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHH
Q 019502 24 LPLIALIFYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (340)
Q Consensus 24 ~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~ 100 (340)
+..-++.++--.| |-...|+.+...+|.. ...+++++.++ .+|..-.. .-.. ..||..+..+| .||+.|.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgV--glPlLgiI---a~a~-~g~~~~~l~~~-i~~~fg~ 80 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGV--GLPLLGII---AVAL-YGGGVESLATR-IGPWFGV 80 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHh--hHHHHHHH---Hhhc-cCCCHHHHhhh-ccchHHH
Confidence 3334445555577 7556666654434433 34556666664 33332222 2222 23356666655 6888888
Q ss_pred HHHHHHHHH-Hh-hhHHHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHH
Q 019502 101 QEGFWKWLS-GV-LDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (340)
Q Consensus 101 ~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 176 (340)
+..-...+. .. +..+-.+...-|.. ..|..+ +.....+..+++..+..++.++.-|..+|+.+++..+.++.++
T Consensus 81 ~f~~~iyLsIGPffAiPRt~~vsfe~~--i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~ 158 (431)
T COG1114 81 LFAIAIYLSIGPFFAIPRTGAVSFEVG--ISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLL 158 (431)
T ss_pred HHHHHHHHHhcccccCCcccchhHHHh--hhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHH
Confidence 766543332 11 22222222222221 222222 2344667778888999999999999999999999999999988
Q ss_pred HHHHHHhccccCCCccccc-cCccchHHHH--------HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHH
Q 019502 177 VMGILSIPRIKPRRWLVVD-FKKVDWRGYF--------NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY 247 (340)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y 247 (340)
.+++.++.+.+...-.+.+ .....+...+ ..+-.+|...-.-+.=....+++ |+..|-...+-.+.++..
T Consensus 159 il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~L 237 (431)
T COG1114 159 ILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILL 237 (431)
T ss_pred HHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHH
Confidence 8888877665433221111 1112222222 22334454444333333344443 345555554444444433
Q ss_pred HHHHHHHHh--ccCC---CCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019502 248 LIPLLAGTG--GLTS---LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (340)
Q Consensus 248 ~l~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 310 (340)
.++.....+ .... .+.++...-+....+..+|+....++.+.+.++|+.+..+...+++...-
T Consensus 238 a~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 238 ALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222 1112 12344456677788888999999999999999999999999998887764
No 74
>PRK10484 putative transporter; Provisional
Probab=98.32 E-value=0.0019 Score=62.85 Aligned_cols=286 Identities=14% Similarity=0.005 Sum_probs=145.9
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
-.|+++++-..+-..++..+ ...+.|+.... .|..... |.....+..++.++.+++--++. +.-..++|.++-|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~--~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA--WEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH--HHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhc
Confidence 46999999877777777666 46677776655 5544311 22222222333444444433343 2347889999999
Q ss_pred CchhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhch-----hhhhhhhHHHHH-HHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLP-----IFNLLIARIPAL-LGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
|++.....+....+.+... .+......+..++..+. ..+.....++.. ++..+...+....|.|.+.+...+=
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9887777766666655543 23332333333333221 111111122111 1223446777778888776666555
Q ss_pred HHHHHHHHHHHHHHHhccc---------------cCCCcccccc--CccchHHHHHHH-HHhhhhHHhhhhhhh---hcc
Q 019502 168 LVFSLCPFVVMGILSIPRI---------------KPRRWLVVDF--KKVDWRGYFNSM-FWNLNYWDKASTLAG---EVE 226 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~~-~~af~G~e~~~~~~~---e~k 226 (340)
.++.++..+++.+.++... +++.+...+. .+..|...+... +..+.++-...++.. -.|
T Consensus 192 ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak 271 (523)
T PRK10484 192 GIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAK 271 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 4444443322222211111 1111211111 112343333221 111222222233333 246
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHH---HHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhh
Q 019502 227 NPSKTFPKALLGAVVLVVSSYLIPLL---AGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (340)
Q Consensus 227 ~p~k~~p~a~~~~~~i~~i~y~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (340)
|+ |+..|+.+.+.....+......+ ......| ++..+++..+..+..+..++++.-++....+.+..++..+.+.
T Consensus 272 ~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~ 349 (523)
T PRK10484 272 NL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYG-DGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLN 349 (523)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 77889888876555444333222 2222223 2244456677788888888888888777777777777777666
Q ss_pred hhhHH
Q 019502 304 GDAFQ 308 (340)
Q Consensus 304 ~~sR~ 308 (340)
+.+-.
T Consensus 350 s~st~ 354 (523)
T PRK10484 350 SASTL 354 (523)
T ss_pred HHHHH
Confidence 66544
No 75
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.31 E-value=0.0013 Score=62.62 Aligned_cols=238 Identities=8% Similarity=-0.040 Sum_probs=122.8
Q ss_pred cccccCCcccchhHHHHhhhhhcc-cccCchhhhhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH
Q 019502 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKA-GGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (340)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~-~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 90 (340)
+..++||+.++++...+=++..+. ..+........ +.+....+++.++..++ .....-..+..+.++-- ......
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i-~~~~~~l~~~~G~r~Gl--~~~v~s 82 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLL-GGIFVALNSRAGAKYGL--PFPVLS 82 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHhhhhHHHhCC--Ccchhh
Confidence 344667888999998887776655 33333333222 12333334444443332 22233333334443322 466778
Q ss_pred HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhh----h-----hHHHHHHHHHHHHHH-HHHhcchhH
Q 019502 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL----I-----ARIPALLGITGALTY-LNYRGLHIV 160 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~g~~~~ 160 (340)
|..||++-+.+.+...++..+...+......++.++..+....+. . ...+..+++..+... ....|.|..
T Consensus 83 R~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~ 162 (442)
T TIGR00800 83 RASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIR 162 (442)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 889999999999999888888888888888877766554422111 0 223332233333333 345566655
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhcccc-CCC-c-cccc-cCccc---hHHHHHHH-HHhhhhHHhhhhhhhhccCCCCcH
Q 019502 161 GFSAVSLLVFSLCPFVVMGILSIPRIK-PRR-W-LVVD-FKKVD---WRGYFNSM-FWNLNYWDKASTLAGEVENPSKTF 232 (340)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~i~~~~~~~-~~~-~-~~~~-~~~~~---~~~~~~~~-~~af~G~e~~~~~~~e~k~p~k~~ 232 (340)
.+.+....+..++.+++.+. ...+.+ ..+ . .+.. .++.. +...+... -+........+.++...|++ |+.
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~~ 240 (442)
T TIGR00800 163 HLFEWLAVVPPFAAFGMLIW-ALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cch
Confidence 55555555444443333332 222222 111 1 1110 11111 22222221 12234445777888899986 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019502 233 PKALLGAVVLVVSSYLIPLLAGT 255 (340)
Q Consensus 233 p~a~~~~~~i~~i~y~l~~~~~~ 255 (340)
.+....+.....+...+......
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~a 263 (442)
T TIGR00800 241 IWGQFLALPGGFTLTCFFGILGA 263 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555554444433
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.29 E-value=0.0025 Score=61.66 Aligned_cols=282 Identities=9% Similarity=0.046 Sum_probs=140.5
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHH-HHHHh---ccCCCCCchhhhH
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALI-TAELA---TSFPENGGYVIWI 90 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~-~~el~---~~~p~~Gg~y~~~ 90 (340)
-.|+++++-......++..+ ...+.|+.... .|....++. +...+........ ..++. .+.++.-..++|.
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWIA--IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 46999999888877777767 45677776665 565432111 1111111111111 11221 2233445789999
Q ss_pred HhhhCc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 91 SSAFGP---FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 91 ~~~~G~---~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
++-||+ ....+.+....+......+......+..++..++. + ....+.+...+...+....|.|.+.+...+=
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi-~---~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ 190 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM-S---YETALWAGAAATILYTFIGGFLAVSWTDTVQ 190 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999984 45556666666666666677777777777766541 1 1222223445667788888888877666655
Q ss_pred HHHHHHHHHHHHHHHhcccc-CC-------Cccccc---cCccchHHHHHHHHHhhhhHHhhhhhhhh---ccCCCCcHH
Q 019502 168 LVFSLCPFVVMGILSIPRIK-PR-------RWLVVD---FKKVDWRGYFNSMFWNLNYWDKASTLAGE---VENPSKTFP 233 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~~~~-~~-------~~~~~~---~~~~~~~~~~~~~~~af~G~e~~~~~~~e---~k~p~k~~p 233 (340)
.++.++..+++.+..+.... .+ +..+.. .++.++........+.+ |+-..+++... .||+ |+..
T Consensus 191 ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~p~~~qR~~aak~~-~~~~ 268 (502)
T PRK15419 191 ASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGL-GYFGQPHILARFMAADSH-HSIV 268 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHHHHHHHHH-HHcCChHHHHhheecCCh-HHHH
Confidence 55544433332222221111 00 000100 11223333332222221 22223333332 2443 3333
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHhccCCC-C-----cccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhh
Q 019502 234 KALLGA----VVLVVSSYLIPLLAGTGGLTSL-S-----SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (340)
Q Consensus 234 ~a~~~~----~~i~~i~y~l~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (340)
++...+ ........++..... ...+.. + .++++..+..+.++..++++.-++....+.+..++..+.+.
T Consensus 269 ~a~~~~~~~~~~~~~~~~~ig~~~~-~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~ 347 (502)
T PRK15419 269 HARRISMTWMILCLAGAVAVGFFGI-AYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLL 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221 111111111111111 111111 1 12345567777778888888888888888888887777776
Q ss_pred hhhHH
Q 019502 304 GDAFQ 308 (340)
Q Consensus 304 ~~sR~ 308 (340)
+.+=.
T Consensus 348 a~ss~ 352 (502)
T PRK15419 348 VCSSA 352 (502)
T ss_pred HHHHH
Confidence 66533
No 77
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.28 E-value=0.0028 Score=58.70 Aligned_cols=279 Identities=15% Similarity=0.070 Sum_probs=152.1
Q ss_pred cchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHHh-hhCch
Q 019502 22 TVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISS-AFGPF 97 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~-~~G~~ 97 (340)
|....+.-+.++.+| | +-=.|......+|. +.++-+++..++..+|..+.=--++|+...+ -+.|.-... ...++
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~ 88 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEW 88 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchh
Confidence 445555667787888 6 44555555553444 4566676666544555444433355555433 123322221 11233
Q ss_pred hHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHhc-----------hhhh-hhhhHHHHHHHHHHHHHHHHHhcchh-HH
Q 019502 98 WGFQ---EGFWKWLSGVLDNALYPVLFLDYLKHSL-----------PIFN-LLIARIPALLGITGALTYLNYRGLHI-VG 161 (340)
Q Consensus 98 ~g~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 161 (340)
.|++ .+.....+|..............+...+ .+.. +++.....-++++++...+..+|++. ..
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 3332 3334444444444443333332222111 1111 23334455567778888899999997 89
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhccccCC---C--cccccc---CccchHHHHHHHHHhhh-hHHhhhhhhhhccCCCCcH
Q 019502 162 FSAVSLLVFSLCPFVVMGILSIPRIKPR---R--WLVVDF---KKVDWRGYFNSMFWNLN-YWDKASTLAGEVENPSKTF 232 (340)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~---~--~~~~~~---~~~~~~~~~~~~~~af~-G~e~~~~~~~e~k~p~k~~ 232 (340)
|.++++.+...+.++++.+-.+...... + +.|+.. ++..|...+..++|+.+ |+.....++..++| ++|+
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l 247 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDL 247 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccch
Confidence 9999999998888887777665432211 0 122111 13456666677888865 99999999999998 5789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCccccc---chHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHh
Q 019502 233 PKALLGAVVLVVSSYLIPLLAGTGGL---TSLSSEWSD---GYFAEVGMLIG-GFWLKWWIQAASAMSNLGLFEAEM 302 (340)
Q Consensus 233 p~a~~~~~~i~~i~y~l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 302 (340)
++.-+.....-...-++..+.+.-.. +.+.-+.+. ..+.+++++.. |.....+.-...+.+.++|..+.+
T Consensus 248 ~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 248 VSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777666665555554444332 222111111 23555665553 344444444444555555544443
No 78
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.25 E-value=0.0023 Score=62.59 Aligned_cols=281 Identities=12% Similarity=0.009 Sum_probs=143.7
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
-.|+++++..-....++..+ +..+.++.... .|....++. +...+......+.+++--++.-. -...+|.++-|
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~--~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf 140 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS--LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRL 140 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH--HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHc
Confidence 46999998766555565555 45667666655 454432222 11111122334555665555432 35777777778
Q ss_pred C-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 95 G-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 95 G-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+ |....+.+....+..+.....+....+..++.+++. + ....+.+...+...+....|.|...+.+.+=.++.+.
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~---~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~ 216 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N---YHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLLLF 216 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6 667777777766666666777777777777766641 1 1122223444556677788888887777666555554
Q ss_pred HHHHHHHHHhcccc--------------CCCccccccCc--cchHHHHHHHHHhhhhHHhhhhhhhh---ccCCCCcHHH
Q 019502 174 PFVVMGILSIPRIK--------------PRRWLVVDFKK--VDWRGYFNSMFWNLNYWDKASTLAGE---VENPSKTFPK 234 (340)
Q Consensus 174 ~l~~~~i~~~~~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~af~G~e~~~~~~~e---~k~p~k~~p~ 234 (340)
..++..+....+.+ ++......+.. .+....+...+....|.-..+|.... .||+ |+..|
T Consensus 217 g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks~-k~ar~ 295 (549)
T TIGR02711 217 GATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDA-KEARK 295 (549)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeecCCH-HHHHH
Confidence 33333222221111 11000000000 01111222211122244334555543 4774 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCCC-Ccc--------cccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHh
Q 019502 235 ALLGAVVLVVSSYLIPLLAGTG---GLTSL-SSE--------WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEM 302 (340)
Q Consensus 235 a~~~~~~i~~i~y~l~~~~~~~---~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (340)
+..++.......|+...+.... ..+++ +.. +.+.....+.....+.++.-++....+.+..++..+.+
T Consensus 296 s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mST~~s~l 375 (549)
T TIGR02711 296 SVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLT 375 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777766554433322 12211 110 11223334455556666655555555555555554444
Q ss_pred hhhh
Q 019502 303 SGDA 306 (340)
Q Consensus 303 ~~~s 306 (340)
.+.+
T Consensus 376 ~a~s 379 (549)
T TIGR02711 376 LAGA 379 (549)
T ss_pred HHHH
Confidence 4443
No 79
>PRK09395 actP acetate permease; Provisional
Probab=98.25 E-value=0.0032 Score=61.59 Aligned_cols=150 Identities=12% Similarity=-0.058 Sum_probs=89.3
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
-.|+++++......+++..+ ...+.++.... .|....++ .+...+......+.+++--++... -..++|.++-|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~~--~~~~~~g~~~~~~~~~~~~r~~g~-~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLIY--SIGFLVGWPIILFLIAERLRNLGK-YTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCC-ccHHHHHHHHc
Confidence 46999998877777776666 45677776655 55543221 111111122223334443343322 35777888889
Q ss_pred C-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 95 G-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 95 G-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
| |....+.+....+..+.....+....+..++.+++. + ....+.+...+...+....|.|.+.+...+=.++.++
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-~---~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~ 218 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-N---YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLS 218 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 8 568888888877777777777777777777766541 1 1222223444566777788888876666655544444
Q ss_pred H
Q 019502 174 P 174 (340)
Q Consensus 174 ~ 174 (340)
.
T Consensus 219 g 219 (551)
T PRK09395 219 G 219 (551)
T ss_pred H
Confidence 3
No 80
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.17 E-value=0.0052 Score=57.31 Aligned_cols=173 Identities=8% Similarity=-0.120 Sum_probs=108.2
Q ss_pred chhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHh
Q 019502 85 GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (340)
Q Consensus 85 g~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (340)
......|..||++.+.+......+..+...+.+....++.++...+..-+.........++..+.......|.|...+++
T Consensus 59 ~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~G~~~i~~~~ 138 (386)
T TIGR02358 59 SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLSGPLAFVWLN 138 (386)
T ss_pred CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999989988888888888888888776643210111222223444456777789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCccccccCccchHHHHHHHHHh-hhhHHhhhhhhhhccCCCCcHHHHHHHHHHHH
Q 019502 165 VSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWN-LNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (340)
Q Consensus 165 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-f~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~ 243 (340)
++..+...+..+...+....+.+.+..... .++..+...+....-. -.+....+.+++..|+| |+.-++...+..+.
T Consensus 139 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~ 216 (386)
T TIGR02358 139 NWSVWLLLIATLWLLVVVFSKADLSELWNR-AGDMSFAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIG 216 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCCccHHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHH
Confidence 998887777666555444433332211111 1123444333222111 12223477888888886 44667888777777
Q ss_pred HHHHHHHHHHHHhccC
Q 019502 244 VSSYLIPLLAGTGGLT 259 (340)
Q Consensus 244 ~i~y~l~~~~~~~~~~ 259 (340)
..+..+.........+
T Consensus 217 ~~~~~~~G~~~~~a~~ 232 (386)
T TIGR02358 217 SCWMYFLGLAVTLATG 232 (386)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7776666665554443
No 81
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.12 E-value=0.00017 Score=68.65 Aligned_cols=232 Identities=13% Similarity=-0.015 Sum_probs=116.6
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhh-hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSV-KAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~-~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
++||+-++++.+.+=++..+. ..+...... ..+.+....+++.++..++..++.++ .+.++.++-- .....+|..
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~-~~~~G~r~Gl--~~~v~sR~~ 80 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVAL-MGIIGPRTGL--PTMVLSRAS 80 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHH-HTHHHHCC-----HHHHTTTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH-hcccccccCC--Cchhcchhc
Confidence 467888899998886665555 333333332 22234444455555555542333333 3455554422 366677788
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhh------------hhhHHHHHHHHHHHHHHHHHhcchhHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL------------LIARIPALLGITGALTYLNYRGLHIVG 161 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~ 161 (340)
||.+.+.+......+..+...+......++.++...+...+ ....++..+++.++......+|.|...
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~ 160 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALR 160 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999888888888888888888777766543211 123334434444556677888899888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhccccCCCccccccCcc---chHHHHHHHHHhh-hhHHhhhhhhhhccCCCCcHHHHHH
Q 019502 162 FSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKV---DWRGYFNSMFWNL-NYWDKASTLAGEVENPSKTFPKALL 237 (340)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~af-~G~e~~~~~~~e~k~p~k~~p~a~~ 237 (340)
+++.+...+.....+........+.+.+........+. .+...+....-.+ ...-..+.++.+.|++ |+..|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~~~~~~~ 239 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TSAWWGFW 239 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CCcEEEEe
Confidence 88887776555444333333332222211111001111 1222222211111 1223344677788875 44556666
Q ss_pred HHHHHHHHHHHHHH
Q 019502 238 GAVVLVVSSYLIPL 251 (340)
Q Consensus 238 ~~~~i~~i~y~l~~ 251 (340)
.+.....+...+..
T Consensus 240 ~~~~~~~~~~~~~g 253 (440)
T PF02133_consen 240 LGFPGGFIPFVLVG 253 (440)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhhhHHHHHHHHH
Confidence 66655555444433
No 82
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.04 E-value=0.00011 Score=68.55 Aligned_cols=240 Identities=16% Similarity=0.094 Sum_probs=134.4
Q ss_pred cCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhC
Q 019502 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G 95 (340)
.+++-|....+.-..++++| |++..|...+. .|-...++.....+. ......+...+.+++.++. ......++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~-~Giv~gi~li~~~a~-~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKT-AGLLLGILLIVLSAF-LSLLSLYLLSKCAKKSGER-TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHH-hcHHHHHHHHHHHHH-HHHhHHHHHHHhhhhcCCC-CHHHHHHHHcC
Confidence 35677888899999999999 99999999988 665554444555555 4777788888888888777 56666777777
Q ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHhch--hhhhhh-hH-HHHHHHHHHH-HHHHHHhcchhHHHHhHH
Q 019502 96 PFWGFQEGFWKWLSGVLDNALYPVLFL----DYLKHSLP--IFNLLI-AR-IPALLGITGA-LTYLNYRGLHIVGFSAVS 166 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~-~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ 166 (340)
+..........-..... +..+..... ......+. .....+ .+ ..+.++...+ .-+...+.+.. -+....
T Consensus 79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~-Lk~tS~ 156 (411)
T KOG1305|consen 79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDS-LKYTSA 156 (411)
T ss_pred CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhh-HHHHHH
Confidence 66522222221111111 111111111 11111110 000000 00 0011222222 22222222222 222233
Q ss_pred HHHHHHHHHHHHHHHHhcc-cc--CCCccccccCc---cchHHHHHHHHHhhhhHHhhhhhhhhccCC-CCcHHHHHHHH
Q 019502 167 LLVFSLCPFVVMGILSIPR-IK--PRRWLVVDFKK---VDWRGYFNSMFWNLNYWDKASTLAGEVENP-SKTFPKALLGA 239 (340)
Q Consensus 167 ~~~~~~~~l~~~~i~~~~~-~~--~~~~~~~~~~~---~~~~~~~~~~~~af~G~e~~~~~~~e~k~p-~k~~p~a~~~~ 239 (340)
.+...++.++..++.-... .. ++.. +..++. .++...++...++|...+.....-.|+||| +|++.|....+
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~ 235 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLS-YLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIA 235 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcc-cccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHH
Confidence 3333332222222222221 11 1111 111112 345566778899999999999999999999 46789999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 019502 240 VVLVVSSYLIPLLAGTGGLTSLS 262 (340)
Q Consensus 240 ~~i~~i~y~l~~~~~~~~~~~~~ 262 (340)
.....++|.......+..++++.
T Consensus 236 ~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 236 IILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHhhhheecccc
Confidence 99999999999999988888754
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.90 E-value=0.015 Score=56.96 Aligned_cols=146 Identities=10% Similarity=-0.011 Sum_probs=91.7
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~--~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
-.|++++|.......++..+ ...+.++.... .|... ..+++.+. ....++.+++.-+++... ..++|.++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~----~~~~~~~~~p~~rr~~~~-T~~e~l~~ 103 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG----YVLLALLLAPYLRKFGKY-TVPDFIGD 103 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc-cHHHHHHH
Confidence 46999999988877777766 45667666555 45432 12222221 223456667777776544 79999999
Q ss_pred hhC-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHH
Q 019502 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (340)
Q Consensus 93 ~~G-~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (340)
-|| |....+.+....+..+...+......+..++.+++. + .+... .+..++...+....|.|.+.+...+=..+.
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-~-~~~~i--ii~~~i~~iYt~~GG~~aV~~TD~iQ~iim 179 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-D-FETGV--FIGMAIVFFYAVLGGMKGVTWTQVAQYIVL 179 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 998 456777887777777777777777777777766541 1 11111 133344566777778887765554444443
Q ss_pred H
Q 019502 172 L 172 (340)
Q Consensus 172 ~ 172 (340)
+
T Consensus 180 ~ 180 (552)
T TIGR03648 180 I 180 (552)
T ss_pred H
Confidence 3
No 84
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.86 E-value=0.018 Score=54.20 Aligned_cols=297 Identities=10% Similarity=0.022 Sum_probs=162.1
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhh-hhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-C-chhhhH
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDS-VKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-G-GYVIWI 90 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-G-g~y~~~ 90 (340)
.+++|+.++++-+.+=.+.+.. .-+.+.+. +..+..+.-.+++.++.-+ +.....-++.+.-.. | ..-...
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~-----iv~i~m~Lng~~G~~~gIpFpv~~ 109 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNL-----IVAIFMVLNGHAGSKYGIPFPVLS 109 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHHHHHhccCcccccCCCchHHH
Confidence 3568999999999987776655 33333333 3333444444444444333 233333344422111 1 233456
Q ss_pred HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----hhhh----------hhhhHHHHHHHHHHHHHHHHHhc
Q 019502 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL----PIFN----------LLIARIPALLGITGALTYLNYRG 156 (340)
Q Consensus 91 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~g 156 (340)
|..||-+.+..-..+=.+.-++...+++...+..++.++ |..+ -+..+++..+++-.+-..+..+|
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 778887777666666555556666666666665555443 3211 13456666666666678888899
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHhccccCCCc---cc-cccCccchH-HHHHHHHHhhh----hHHhhhhhhhhccC
Q 019502 157 LHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRW---LV-VDFKKVDWR-GYFNSMFWNLN----YWDKASTLAGEVEN 227 (340)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~---~~-~~~~~~~~~-~~~~~~~~af~----G~e~~~~~~~e~k~ 227 (340)
.+...|++.+..+........+.+....+.+.... .+ ...+..... ..+..+..... ..-+.+.++++.|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 99999999999999999888888888776654221 11 111122222 22222222222 23356677778888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHHHH-HHHHHHHHHHHHH-HHHHhhhh
Q 019502 228 PSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKW-WIQAASAMSNLGL-FEAEMSGD 305 (340)
Q Consensus 228 p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 305 (340)
| |+.-++-++++.+...++-++..+.......-.-+..-+|. ++.++........ +..+..+++..++ ..+...++
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp 347 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSP 347 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCCh
Confidence 6 55667777777777666666555544322110011112343 4444544443443 5555555555553 22333333
Q ss_pred hHHHHHhhhcCCchHHHh
Q 019502 306 AFQLLGMSEMGMLPAIFA 323 (340)
Q Consensus 306 sR~l~~~a~d~~lP~~~~ 323 (340)
..-+- +.+|+..+
T Consensus 348 ~~D~s-----~l~Pk~in 360 (497)
T COG1953 348 GYDLS-----ALFPKYIN 360 (497)
T ss_pred HHHHH-----Hhcccccc
Confidence 33332 45666554
No 85
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.82 E-value=0.015 Score=53.70 Aligned_cols=240 Identities=10% Similarity=-0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhccCCC--CCchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHH
Q 019502 66 SIPEALITAELATSFPE--NGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALL 143 (340)
Q Consensus 66 ~~~~~~~~~el~~~~p~--~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
..+..+.+-|++.|+-. ..+..+-.++.+||++++.......+........+....+..++.+++ .+.....+
T Consensus 22 ~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-----~~~~~~~~ 96 (358)
T PF01566_consen 22 SNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-----IPLWIWVL 96 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcHHHHH
Confidence 55567777777777642 346777888889999999888887777777777777666666665552 12222222
Q ss_pred HHHHHHHHHH---HhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCC----Ccc-ccccCccchHHHHHHHHHhhhhH
Q 019502 144 GITGALTYLN---YRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR----RWL-VVDFKKVDWRGYFNSMFWNLNYW 215 (340)
Q Consensus 144 ~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~af~G~ 215 (340)
+..+....+. ..+-|...|+..++..+..+..+...+.. +.+.. .+. |..+.+.++....+.+=.....+
T Consensus 97 ~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~--~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~ 174 (358)
T PF01566_consen 97 LVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIV--HPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPH 174 (358)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHH
Confidence 2222222222 44556666666665555433333322222 22211 111 21111111222222111111112
Q ss_pred Hhhh--hh-hhh------------ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcc-
Q 019502 216 DKAS--TL-AGE------------VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGG- 279 (340)
Q Consensus 216 e~~~--~~-~~e------------~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (340)
+... +. .|+ .|.-++|.-.++..+.++...+++....... +...-..+.....+..+...|
T Consensus 175 ~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~---~~~~~~~~~~~~~~~L~~~~G~ 251 (358)
T PF01566_consen 175 NLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLY---PGGSEVETAAQAAQALEPLLGS 251 (358)
T ss_pred HHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHhcCc
Confidence 2111 11 111 1111222222333333332222222222221 222112234456677788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 019502 280 FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEM 315 (340)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 315 (340)
++...++.+..+.+.+++..+...+.+|.+-+.-+-
T Consensus 252 ~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~ 287 (358)
T PF01566_consen 252 PWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGW 287 (358)
T ss_pred hHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcC
Confidence 799999999999999999999999988888766543
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.29 E-value=0.17 Score=48.02 Aligned_cols=64 Identities=11% Similarity=-0.120 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhccCCCC-C-chhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Q 019502 66 SIPEALITAELATSFPEN-G-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129 (340)
Q Consensus 66 ~~~~~~~~~el~~~~p~~-G-g~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (340)
..+..+.+-|++.|.-.. | +..+-.++-+||+.+++......+........+..+.+.-++.++
T Consensus 74 s~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 74 SNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555677777887776432 3 788899999999988876555555555555555555554444443
No 87
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=96.74 E-value=0.43 Score=43.38 Aligned_cols=290 Identities=12% Similarity=-0.007 Sum_probs=158.4
Q ss_pred cCCcccchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCCCchhhhHHh
Q 019502 17 TSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIF--PLIWSIPEALITAELATSFPENGGYVIWISS 92 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~--~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 92 (340)
..|+++.+-+.+...++-++ + ..+-|+.... -|-+|.+++++=. ..+.....+--++++++++. +=...++.++
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk-~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n-AltI~D~l~~ 114 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYN-ALTINDLLFA 114 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHH-hchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC-CeeHHHHHHH
Confidence 45888887777666666666 3 3444554444 4443333332211 11111122333455555552 2245555554
Q ss_pred h-hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchh---HHHHhHHHH
Q 019502 93 A-FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAVSLL 168 (340)
Q Consensus 93 ~-~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~ 168 (340)
- =+++..++.+....+.....+.++-.+.+..+.....- ++.+-+. +.-..+..+....|.|. .+.+|-...
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---dY~tgL~-ifa~~V~iYt~fGGFRAvvltD~IQG~vm 190 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---DYTTGLL-IFAVSVAIYTAFGGFRAVVLTDTIQGLVM 190 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---CchhhHH-HHHHHHHHHHhhcceeeeehHHHHHHHHH
Confidence 4 46888889999999998888888888888888776541 1111111 22233455666677775 455665544
Q ss_pred HHHHHHHHHHHHHH---h-------ccccCCCccccccCccchHHHHHHHHHhhhhHH--hhhhhhh---hccCCCCcHH
Q 019502 169 VFSLCPFVVMGILS---I-------PRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWD--KASTLAG---EVENPSKTFP 233 (340)
Q Consensus 169 ~~~~~~l~~~~i~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e--~~~~~~~---e~k~p~k~~p 233 (340)
.+.-+.+..-.+-. + ...+++-..|.+... .....+-..+|...|+. ..++.+- ..|| +|.+.
T Consensus 191 ligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~-~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih 268 (473)
T COG4145 191 LIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADD-ILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIH 268 (473)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcc-cccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHh
Confidence 44333333322221 1 111222222222111 12222223344444443 2333333 4588 48899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhh----
Q 019502 234 KALLGAVVLVVSSYLIPLLAGTG---GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDA---- 306 (340)
Q Consensus 234 ~a~~~~~~i~~i~y~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---- 306 (340)
++++++..+.+++.+..-++... +.|+ +..++.....+.-+..++...-++....+.+.-++.++.+.-.|
T Consensus 269 ~gmiigt~vi~il~~gmhl~G~~graViPd--lt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstli 346 (473)
T COG4145 269 RGMIIGTIVIAILMLGMHLAGALGRAVIPD--LTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLI 346 (473)
T ss_pred cCcchHHHHHHHHHHHHHHhhhhhhhhcCC--CCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877666432 1222 33455567778888888877777777777777777766554444
Q ss_pred HHHHHhhhcC
Q 019502 307 FQLLGMSEMG 316 (340)
Q Consensus 307 R~l~~~a~d~ 316 (340)
|-+|.--||+
T Consensus 347 KdLy~~~~~~ 356 (473)
T COG4145 347 KDLYLNVRDK 356 (473)
T ss_pred HHHHHHHHHH
Confidence 4445444443
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.51 E-value=0.84 Score=43.80 Aligned_cols=304 Identities=13% Similarity=0.145 Sum_probs=142.1
Q ss_pred cccCCcccchhHHHHhhhhhcc-ccc--Cchhhh-hhc-------CChH-------------HHHHHHHHHHHHHHHHHH
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPF--GVEDSV-KAG-------GGPL-------------LSLLGFLIFPLIWSIPEA 70 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~--~~~~~~-~~~-------~g~~-------------~~~~~~~i~~~~~~~~~~ 70 (340)
++.|.+.|.++=.++.+++-+| |+. +....+ +.. .+.. +.+.+|.+.++. .++++
T Consensus 69 ~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~-~l~~a 147 (485)
T PF02028_consen 69 DDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALV-GLAIA 147 (485)
T ss_dssp TSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHH-HHHHH
T ss_pred CCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Confidence 3556778888888888888888 643 111111 100 0100 234466666663 77677
Q ss_pred HHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHhchhhhhhhhHHHHHHHHH
Q 019502 71 LITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLF----LDYLKHSLPIFNLLIARIPALLGIT 146 (340)
Q Consensus 71 ~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (340)
+.+-.-.+...-+...|-...+...++.|.+......++.+.+.+...-.. +.-++..+...++...+..+..++.
T Consensus 148 y~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~ 227 (485)
T PF02028_consen 148 YFFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVIT 227 (485)
T ss_dssp HHHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHH
T ss_pred eeeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 766663333333344455554444455677666666666555544333333 3333344432223344555555666
Q ss_pred HHHHHHHHhcchh-HHHHhHHHHHHHHHHHHHHHHHHhccc------c-----CCCcc-----ccccCccc-hHHHHHHH
Q 019502 147 GALTYLNYRGLHI-VGFSAVSLLVFSLCPFVVMGILSIPRI------K-----PRRWL-----VVDFKKVD-WRGYFNSM 208 (340)
Q Consensus 147 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~i~~~~~~------~-----~~~~~-----~~~~~~~~-~~~~~~~~ 208 (340)
++.+.-...|+|. .+++.++-..+.+..++.+.+.|=... + .+|+. .....+.+ |..-...-
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~w~~~WTvF 307 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQWPQDWTVF 307 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTHHHHHTHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccCCCHHH
Confidence 6666667766643 444444444444444443333331100 0 00111 11111222 55444433
Q ss_pred HHhhh---hHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc------cC-CCCcc--cccchHHHHHHH
Q 019502 209 FWNLN---YWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGG------LT-SLSSE--WSDGYFAEVGML 276 (340)
Q Consensus 209 ~~af~---G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~------~~-~~~~~--~~~~~~~~~~~~ 276 (340)
.|+.. +=-....+++=.|. |+++.-++..+....+.-.+ -+.+... .. ..++. +..++-..+.+.
T Consensus 308 YwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~-wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~~~~ 384 (485)
T PF02028_consen 308 YWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFL-WFSIFGGYALYLQLSGAGDLAAANEQGPEAALFAF 384 (485)
T ss_dssp HHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHH-HHHHHCchHHhhHhhhhhhHHHHhhcchhhHHHHH
Confidence 22211 11122233344444 88877666666555543322 2222211 11 11111 122333333333
Q ss_pred HcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC-CchHHH
Q 019502 277 IGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG-MLPAIF 322 (340)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~-~lP~~~ 322 (340)
...-++..++.+..++..+....+..-+.+..+-.++.+| .=|+..
T Consensus 385 l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~ 431 (485)
T PF02028_consen 385 LEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRW 431 (485)
T ss_dssp HHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchH
Confidence 3332455677777777777778888888888888888664 334433
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.38 E-value=0.9 Score=42.77 Aligned_cols=271 Identities=13% Similarity=0.082 Sum_probs=152.9
Q ss_pred cccCchhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH-HhhhCchhHHHHHHHHHHHHhhhH
Q 019502 37 GPFGVEDSVKAGGGPL-LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI-SSAFGPFWGFQEGFWKWLSGVLDN 114 (340)
Q Consensus 37 gi~~~~~~~~~~~g~~-~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~-~~~~G~~~g~~~g~~~~~~~~~~~ 114 (340)
+..++++.+...+-++ ...++|.. ......++.+|--|++-+- ..-++. .|--.++...+.+....+.-.++.
T Consensus 61 SflGiag~I~~~GYdG~~Y~iG~~~----Gy~i~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl 135 (529)
T COG4147 61 SFLGIAGLIFISGYDGLIYSIGWTG----GYPILLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYL 135 (529)
T ss_pred hhhchhHhhhhcccchHHHHHHHHH----HHHHHHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 4455655554422221 22344443 2444677777777776333 233333 344457788888887777777777
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhcccc--CCC--
Q 019502 115 ALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIK--PRR-- 190 (340)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~--~~~-- 190 (340)
..+....+..+.-++.. .....+.++.++...+..+.|.|.+.|.|.+=..+.+...++..+.-..+.+ +..
T Consensus 136 iaQmvGaG~li~~l~gv----~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~ 211 (529)
T COG4147 136 IAQMVGAGLLISLLLGV----PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF 211 (529)
T ss_pred HHHHHhhHHHHHHHhCC----CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 88888888877777651 1223333556666778888999999999877666655544443333222221 111
Q ss_pred -----ccc---------cccCccchHHHHHHHHHhhhhHHhhhhhhhhc---cCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 191 -----WLV---------VDFKKVDWRGYFNSMFWNLNYWDKASTLAGEV---ENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 191 -----~~~---------~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~---k~p~k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
.++ .+....++...++..+--..|....+|.--+. .| .|+..|+..+++...+++|+..-..
T Consensus 212 ~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 212 AEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred HHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 01112344555555544555777777665432 33 3667788999999999999876554
Q ss_pred HHhc----cCC--C------------C------cccccchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHh----hh
Q 019502 254 GTGG----LTS--L------------S------SEWSDGYFAEVGMLIG-GFWLKWWIQAASAMSNLGLFEAEM----SG 304 (340)
Q Consensus 254 ~~~~----~~~--~------------~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~ 304 (340)
-... .++ . + ..+.+.......+.+. ++|..-+++...+...+++.-+.. .+
T Consensus 291 g~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasa 370 (529)
T COG4147 291 GAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASA 370 (529)
T ss_pred HHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3322 211 0 1 0111233444555566 577777777776666666544443 34
Q ss_pred hhHHHHHhhhcCC
Q 019502 305 DAFQLLGMSEMGM 317 (340)
Q Consensus 305 ~sR~l~~~a~d~~ 317 (340)
.||-+|++--|+-
T Consensus 371 vsHDiY~~vik~~ 383 (529)
T COG4147 371 VSHDLYAMVIKKG 383 (529)
T ss_pred HHhHHHHHHhCCC
Confidence 5666666554443
No 90
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.96 Score=42.43 Aligned_cols=105 Identities=15% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhccCCC--CCchhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHH
Q 019502 66 SIPEALITAELATSFPE--NGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALL 143 (340)
Q Consensus 66 ~~~~~~~~~el~~~~p~--~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
..+..+..-|++.+.-- .-+.-+-.++.++|+.+++......+......-.+..+.+-.++.++. .+..+..+
T Consensus 57 s~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~-----ip~~~g~i 131 (416)
T COG1914 57 SNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG-----IPLIIGAV 131 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHH
Confidence 55566666676666532 235778888889999888877766666666666666666666665553 22333323
Q ss_pred HHHHHHHHHHHh-cchhHHHHhHHHHHHHHHHH
Q 019502 144 GITGALTYLNYR-GLHIVGFSAVSLLVFSLCPF 175 (340)
Q Consensus 144 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l 175 (340)
+.......+..+ |-|...++.........+..
T Consensus 132 Itav~~~iil~~~~~r~~E~~v~~l~~~~~i~~ 164 (416)
T COG1914 132 ITAVDVLIILLLKGYRLLERVVLILGLVLVILF 164 (416)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333333333333 46666666555444444333
No 91
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.18 E-value=0.71 Score=44.99 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccC-C---C-cccccc----CccchHHHHHHHHHhhh-hHH
Q 019502 147 GALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP-R---R-WLVVDF----KKVDWRGYFNSMFWNLN-YWD 216 (340)
Q Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~-~---~-~~~~~~----~~~~~~~~~~~~~~af~-G~e 216 (340)
.+......+|+|..+|+......+..+.++++.+-++...+. + . +.| ++ ++.-|...+..++|+.. |+.
T Consensus 189 ~iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~p-d~~~l~~~~vW~~A~~Q~ffsl~ig~G 267 (523)
T PF00209_consen 189 LIVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTP-DWSKLLDPKVWIAALGQVFFSLSIGFG 267 (523)
T ss_dssp HHHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB--TTGTTSHHHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecC-CcchhhHHHHHHHHHHHHhhccCCCcc
Confidence 344555678999998888776655454444444444322110 0 0 112 11 13447777778888876 888
Q ss_pred hhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 019502 217 KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGT 255 (340)
Q Consensus 217 ~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~ 255 (340)
....++...|+ ++|++|........-....++..+++.
T Consensus 268 ~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if 305 (523)
T PF00209_consen 268 IMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIF 305 (523)
T ss_dssp HHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHH
T ss_pred eEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHHHH
Confidence 88999999988 467888776666665555544444443
No 92
>PLN00149 potassium transporter; Provisional
Probab=96.18 E-value=0.28 Score=49.10 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=108.2
Q ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC
Q 019502 111 VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR 190 (340)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 190 (340)
+++.+....++.+-+....|....++....+++++++.+..+--+|...+++..--...+=+..+..+.+..+.+.+|.-
T Consensus 171 vlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~V 250 (779)
T PLN00149 171 VLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHV 250 (779)
T ss_pred ccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhH
Confidence 44455555666666654443222222323455667777777777777766665544444333444455555555544543
Q ss_pred cccccc----------CccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHhccC
Q 019502 191 WLVVDF----------KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG-AVVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 191 ~~~~~~----------~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~-~~~i~~i~y~l~~~~~~~~~~ 259 (340)
+...++ ...+|. .+..++.+..|-|+.-.--+-..+ |.+.++-.. ......+.|+. ..+... -.
T Consensus 251 l~AlnP~y~~~f~~~~~~~g~~-~LGgV~L~iTG~EALyADlGHF~~--~~Ir~aw~~~V~P~L~L~Y~G-QaA~l~-~~ 325 (779)
T PLN00149 251 YQALSPYYMYKFLKKTQRGGWM-SLGGILLCITGSEAMFADLGHFSQ--LSIKIAFTSLVYPSLILAYMG-QAAYLS-KH 325 (779)
T ss_pred hhhcCHHHHHHHHHHCCCceeE-eecchhhcccchhhhhhcccCCCc--cceeeeehhhHHHHHHHHhhh-HHHHHh-cC
Confidence 322211 011221 234567889999987554444433 445444332 22222233333 222222 11
Q ss_pred CCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
++..++..+|+ ....++++.+-+.+.+.++..-..++...+.--+..+.-+-|++|+ +..+.+
T Consensus 326 p~~~~~~~~pF----y~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS 389 (779)
T PLN00149 326 HVIESDYRIGF----YVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTS 389 (779)
T ss_pred cchhccccCcH----HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC
Confidence 22122222343 2345667777677666666666666777777777777888899995 555555
No 93
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.16 E-value=0.039 Score=54.86 Aligned_cols=204 Identities=14% Similarity=0.050 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC
Q 019502 111 VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR 190 (340)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 190 (340)
+++.+....++.+-+....|.++.++ ...+++++++.+..+--+|...+++...-...+=+..+..+.+..+.+.+|.-
T Consensus 188 viTPAISVLSAVeGL~v~~p~l~~~~-Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~V 266 (779)
T PLN00150 188 ILTPSISVLSAVVGIKAASSGLDTNL-VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSV 266 (779)
T ss_pred ccccchhhhhhhccccccCCCCCCCe-ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34445555555665655555543222 23345666667777777777766665544444444445555555555544443
Q ss_pred cccccc-------CccchHH--HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Q 019502 191 WLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL-GAVVLVVSSYLIPLLAGTGGLTS 260 (340)
Q Consensus 191 ~~~~~~-------~~~~~~~--~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~-~~~~i~~i~y~l~~~~~~~~~~~ 260 (340)
+...++ ...+..+ .+..++.+..|-|+.-.--+-..+ |.+.++-. .......+.|+. ..+.... .+
T Consensus 267 l~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~--~~Iriaw~~~V~P~LlL~Y~G-QaA~ll~-~p 342 (779)
T PLN00150 267 FLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTV--KSMQIAFTSLVYPCLLLTYLG-QAAYLVK-HM 342 (779)
T ss_pred HhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCc--cceeeeehhhHHHHHHHHHcc-hHHHHhc-Cc
Confidence 222211 0111111 234567888899977554444433 44544433 222222222322 1111111 11
Q ss_pred CCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 261 LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
+...+|+ ....++++.+-+.+.+.+++.-..++...+.--+..+.-+-|++|+ +..+.+
T Consensus 343 ---~~~~npF----f~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS 402 (779)
T PLN00150 343 ---EDVNDPF----YRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTS 402 (779)
T ss_pred ---ccccCcH----HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC
Confidence 1222333 2445667777777777777666666777777777777888899995 555555
No 94
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=95.93 E-value=1 Score=43.40 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhccC--CCCCchhhhHHhhh-----CchhHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHhchhh
Q 019502 67 IPEALITAELATSF--PENGGYVIWISSAF-----GPFWGFQ-------EGFWKWLSGVLDNALYPVLFLDYLKHSLPIF 132 (340)
Q Consensus 67 ~~~~~~~~el~~~~--p~~Gg~y~~~~~~~-----G~~~g~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (340)
+....-|.-+.-+. ..+||.....+..- +|+..+. .+-...-+.+.+.+....++.|-+....|.+
T Consensus 49 liv~iKYv~ivlradn~GEGGi~aL~sL~~~~~~~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~v~~p~~ 128 (534)
T PF02705_consen 49 LIVTIKYVLIVLRADNNGEGGIFALYSLIRRFLKSSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLEVATPSL 128 (534)
T ss_pred HHHHHheEEEEEEeCCCCChhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhhccCCCC
Confidence 33444444444433 34577766544332 3443333 1122333445667778888888887667755
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCCcccccc-------CccchHH--
Q 019502 133 NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDF-------KKVDWRG-- 203 (340)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~-- 203 (340)
++ ....++++++.....+--+|....++..--...+=+..+..+.+..+.+. |+-+...++ ...++.+
T Consensus 129 ~~--~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~~~ 205 (534)
T PF02705_consen 129 EP--YVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIGFF 205 (534)
T ss_pred cc--eehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCchhh
Confidence 42 22334456666667777777776666643333333333333444443322 322211111 1122222
Q ss_pred HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHH
Q 019502 204 YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG-AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWL 282 (340)
Q Consensus 204 ~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~-~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (340)
.+..++.+..|-|+.-.-.+-.. +|.+.++-.. ......+.|+. .-+... . ++....+-+....++|.
T Consensus 206 ~LG~V~L~~TGaEALyADmGHfg--~~~Ir~aw~~~V~PaL~LnY~G-QgA~ll-------~-~p~~~~npFf~~~P~~~ 274 (534)
T PF02705_consen 206 VLGAVFLCVTGAEALYADMGHFG--RKPIRIAWFFLVFPALLLNYFG-QGALLL-------S-HPEAVSNPFFLLIPEWL 274 (534)
T ss_pred hcchHHHHHhhHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHcc-HHHHHH-------c-CcchhhhHHHHHhHHHH
Confidence 33567889999998765444433 3555554443 12222222221 111111 1 11222333335556777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 283 KWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
.+-+.+.+.++..-..++...+.--+..+.-+-|.+|+ ...+.+
T Consensus 275 ~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS 319 (534)
T PF02705_consen 275 LWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTS 319 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 77777777777777777778788788888889999996 444555
No 95
>PLN00148 potassium transporter; Provisional
Probab=95.82 E-value=0.15 Score=50.87 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=109.2
Q ss_pred HhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCC
Q 019502 110 GVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR 189 (340)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 189 (340)
.+++.+....++.+-+....|.++.++ ...+++++++.+..+--+|...+++..--...+=+..+..+.+..+.+.+|.
T Consensus 170 gvlTPAISVLSAVeGl~v~~p~~~~~~-vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~ 248 (785)
T PLN00148 170 GVLTPAISVLSSVSGLQVTETKLTDGE-LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPK 248 (785)
T ss_pred cccchhHHHHHHhccceecCCCCCCCe-ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHH
Confidence 455556666666666665566553222 2334566666777777777776666654444444445555555565554454
Q ss_pred Ccccccc-------CccchHH--HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHhccC
Q 019502 190 RWLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA-VVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 190 ~~~~~~~-------~~~~~~~--~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~-~~i~~i~y~l~~~~~~~~~~ 259 (340)
-+...++ ...+..+ .+..++.+..|-|+.-.--+-..+ |.+.++-..- .....+.|+. ..+...- .
T Consensus 249 Vl~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~--~~Iriaw~~~V~P~L~L~Y~G-QaA~ll~-~ 324 (785)
T PLN00148 249 IIHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTA--ASIRLAFATVIYPCLVVQYMG-QAAFLSK-N 324 (785)
T ss_pred HhhhcCHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCc--cceEEeeeehHHHHHHHHHcc-hHHHHhc-C
Confidence 3322211 0111111 234567888999987554444433 4444443311 2222222322 2222111 1
Q ss_pred CCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
++ ...+|+ ....+++..+-+.+.+.++..-..++...+.--+..+.-+-|++|+ +..+.+
T Consensus 325 p~---~~~npF----f~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS 385 (785)
T PLN00148 325 IP---SIPNSF----YDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTS 385 (785)
T ss_pred cc---cccCcH----HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC
Confidence 11 222333 3445667777677666666666666777777777777888899995 555555
No 96
>PLN00151 potassium transporter; Provisional
Probab=95.17 E-value=0.091 Score=52.53 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC
Q 019502 111 VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR 190 (340)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 190 (340)
+++.+....++.+-+....|.++.. ....+++++++.+..+--+|...+++...-...+=+..+..+.+..+.+.+|.-
T Consensus 248 vlTPAISVLSAVeGL~v~~p~l~~~-~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~V 326 (852)
T PLN00151 248 VLTPAMSVMSAVSGLKVGVPGFGQD-AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSV 326 (852)
T ss_pred ccccchhhhhhhccccccCCcCCCC-eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4444555555666665555654322 233445666777777777777776666544444334444455555555544443
Q ss_pred cccccc----------CccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHhccC
Q 019502 191 WLVVDF----------KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG-AVVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 191 ~~~~~~----------~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~-~~~i~~i~y~l~~~~~~~~~~ 259 (340)
+...++ ...+| ..+..++.+..|-|+.-.--+-... |.+..+-.. ......+.|+. ..+.+.. .
T Consensus 327 l~AlnP~Y~~~Ff~~~~~~gw-~~LGgVvLciTGaEALfADLGHFg~--~sIqiaw~~~V~P~LlL~Y~G-QaA~L~~-~ 401 (852)
T PLN00151 327 FRAFNPVYIYYFFKRNSTKAW-SALGGCVLCATGSEAMFADLGYFSV--RSIQLAFTCLVLPCLLLAYMG-QAAYLMK-N 401 (852)
T ss_pred HhhhCHHHHHHHHHhCCCceE-EEecceeeeeccchhhhcccCCCCc--cceeeeehhhHHHHHHHHHcc-hHHHHhc-C
Confidence 222211 01122 1234567788899976544444433 444443322 12222222222 2221111 1
Q ss_pred CCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
+ +...+| +....++++.+-+.+.+.++..-..++...+.--+..+.-+-|++|+ +..+.+
T Consensus 402 p---~~~~np----Fy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS 462 (852)
T PLN00151 402 P---DSAEQI----FFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTS 462 (852)
T ss_pred c---ccccCc----HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCC
Confidence 1 112223 33445666766666666666666666777777777777778899995 555555
No 97
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=94.82 E-value=1 Score=44.07 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=112.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 019502 106 KWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPR 185 (340)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~ 185 (340)
..-..+++.+....++.|-+....|.+++ ....+++++++....+--+|...+++..--...+=+..+..+.+..+.+
T Consensus 113 ~~gDgvITPAISVLSAVEGL~v~~p~l~~--~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~ 190 (622)
T PRK10745 113 FYGEVVITPAISVMSAIEGLEIVAPQLDT--YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA 190 (622)
T ss_pred HhhccccchhHHHHHHhhcccccCCCCCC--ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 33345666777777777877766776533 2334456666666777777776666655444443334444445555443
Q ss_pred ccCCCcccccc-------CccchHH--HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHH-HHHHHHHHHHHHHHH
Q 019502 186 IKPRRWLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV-VLVVSSYLIPLLAGT 255 (340)
Q Consensus 186 ~~~~~~~~~~~-------~~~~~~~--~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~-~i~~i~y~l~~~~~~ 255 (340)
+|+-+...++ ...++.+ .+..++.+..|-|+.-.-.+-. .+|.+.++-..-. ....+.|+. .-+..
T Consensus 191 -~P~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~G-QgA~l 266 (622)
T PRK10745 191 -NPEVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFG-QGALL 266 (622)
T ss_pred -CHHHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcc-hHHHH
Confidence 3332222110 0112222 2345677888999775444444 3355555443222 122223332 22211
Q ss_pred hccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 256 GGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
. ++.+...+|+- ...++|..+-+.+.+.+++.-..++...+.--+..+.-+-|.+|+ ...+.+
T Consensus 267 l----~~p~~~~NpFf----~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS 330 (622)
T PRK10745 267 L----KNPEAIKNPFF----LLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTS 330 (622)
T ss_pred h----cCchhhcCcHH----HhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCC
Confidence 1 11122233443 335677777777777777777777777777777888888999996 555555
No 98
>PRK09950 putative transporter; Provisional
Probab=94.09 E-value=6 Score=38.22 Aligned_cols=36 Identities=14% Similarity=-0.015 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 281 WLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
++..++.+..++.++....+..-+.+.++-.++.+|
T Consensus 399 P~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g 434 (506)
T PRK09950 399 PAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRN 434 (506)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCC
Confidence 356667777777777777788888888887777654
No 99
>PRK09928 choline transport protein BetT; Provisional
Probab=93.89 E-value=7.7 Score=38.77 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 282 LKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
+..++.+..++..+....++.-+.+-++-.++.+|
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g 441 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKL 441 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCC
Confidence 45555656666666666677777777777777654
No 100
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=93.51 E-value=0.6 Score=46.34 Aligned_cols=205 Identities=16% Similarity=0.106 Sum_probs=113.3
Q ss_pred HhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCC
Q 019502 110 GVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR 189 (340)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 189 (340)
.+++.+....++.+-++...|.++.+ ....+++++++.+..+--+|...+++..--...+=+..+..+.+..+.+.+|.
T Consensus 141 gviTPAiSVLSAVeGl~v~~p~~~~~-~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~ 219 (688)
T TIGR00794 141 GVLTPAISVLSAVSGLEIVAPSLSDT-WVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPE 219 (688)
T ss_pred cccccchhhhhhhccccccCCCCCCC-eehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHH
Confidence 44555666666677666666655222 23334566666777777777776666655444444445555555555543443
Q ss_pred Ccccccc-------CccchHH--HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhccC
Q 019502 190 RWLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL-GAVVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 190 ~~~~~~~-------~~~~~~~--~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~-~~~~i~~i~y~l~~~~~~~~~~ 259 (340)
-+...++ ...++.+ .+..++.+..|-|+.-.-.+-.. +|.+.++-. .......+.|+. .-+.... .
T Consensus 220 Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~G-QgA~ll~-~ 295 (688)
T TIGR00794 220 VLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHFG--KLPIQLAWFTFVYPSLILCYIG-QAAYLSK-H 295 (688)
T ss_pred HHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCCC--cccceeehHHHHHHHHHHHHcc-hHHHHhc-C
Confidence 2222111 0112222 34557888999998755444443 355554443 222222223332 2221111 1
Q ss_pred CCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 260 SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
++ ...+|+- ...++|..+-+.+.+.+++.-..++...+.--+..+.-+-|.+|+ ...+.+
T Consensus 296 p~---~~~NpFf----~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS 356 (688)
T TIGR00794 296 PE---AIKNPFF----LSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTS 356 (688)
T ss_pred cc---hhcCcHH----HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecC
Confidence 11 1223432 446677877777777777777777777777778888888999995 555555
No 101
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=92.70 E-value=0.17 Score=45.37 Aligned_cols=160 Identities=17% Similarity=0.106 Sum_probs=84.0
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-------hh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-------YV 87 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg-------~y 87 (340)
+.+.|++-+|+-.-.-..+=| =+.++|-.+.. +|. +.+.+++..+.+ +..++-...| +-.-|.+.| .|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~Avlh-GGy-w~i~amvg~A~v-CcyTGk~Li~-CLYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLH-GGY-WSIGAMVGVAYV-CCYTGKLLIE-CLYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeE-cch-hHHHHHHhhhhh-hhccchhhhh-hhccCCCCCcEEEeehhH
Confidence 345788888886654444434 35677777665 555 334444433322 2222222211 111222222 23
Q ss_pred hhHHhh-hCchhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhH
Q 019502 88 IWISSA-FGPFWG-FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (340)
Q Consensus 88 ~~~~~~-~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (340)
.-+.+. ++|..| ..+...-+......+-.+....++.++.-+|.+......|-. +.-..+...--+...|.++++..
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~-i~~a~LLpc~FLk~Lk~VS~lSf 266 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMM-ITSASLLPCSFLKDLKIVSRLSF 266 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhh-hhhHHHhhhHHHHHHHHHHHHHH
Confidence 333333 666555 555566667777777788888899999999865422111111 12222233334456677777777
Q ss_pred HHHHHHHHHHHHHHH
Q 019502 166 SLLVFSLCPFVVMGI 180 (340)
Q Consensus 166 ~~~~~~~~~l~~~~i 180 (340)
+.....++.=++++.
T Consensus 267 ~ct~sH~viN~i~v~ 281 (524)
T KOG4303|consen 267 FCTISHLVINLIMVL 281 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666654443333
No 102
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.34 E-value=2.7 Score=40.96 Aligned_cols=280 Identities=13% Similarity=0.011 Sum_probs=142.4
Q ss_pred CCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-CchhhhHHhhh
Q 019502 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAF 94 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~~ 94 (340)
-|++.++..-+--+++.++ -..++|+..++ .|-.. +.+-+..++.....++.+ +--.+..+ ...|.|.+..|
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~-~G~~~--~~~~~~~l~~~~~~~~~f--~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYA-YGIQY--WFFEWNALLSVLLLGWIF--IPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHH-HHHHH--HHHHHHHHHHHHhhheEE--EEEEEecCeeehhHHHHHHh
Confidence 4777777666555555566 36788877665 44433 223333332233333333 22223222 57899999999
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchh---HHHHhHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAVSLLVFS 171 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~ 171 (340)
+++...+....+.+..+...+...+.-+..+++..+.. . .............+..+.|+|. ++-+|.......
T Consensus 119 ~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~---~-~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~ 194 (585)
T KOG2349|consen 119 GGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGIN---L-YLIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGG 194 (585)
T ss_pred cccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccC---c-eeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHH
Confidence 99877777777777777777777766666666665410 0 1222223344455666667765 455555544443
Q ss_pred HHHHHHHHHHHhcccc---------CC----Ccc-ccccC----ccchHHHHH--HHHHhhhhHHhhhhhhhh--ccCCC
Q 019502 172 LCPFVVMGILSIPRIK---------PR----RWL-VVDFK----KVDWRGYFN--SMFWNLNYWDKASTLAGE--VENPS 229 (340)
Q Consensus 172 ~~~l~~~~i~~~~~~~---------~~----~~~-~~~~~----~~~~~~~~~--~~~~af~G~e~~~~~~~e--~k~p~ 229 (340)
...+++.+..+.. .+ ++. ..+.+ ..-|.-.+. .....+.|.+=. ....- .|+ .
T Consensus 195 ---~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~-~VQR~lsl~s-l 269 (585)
T KOG2349|consen 195 ---VLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQL-IVQRYLSLPS-L 269 (585)
T ss_pred ---HHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHH-HHhHHhcccc-H
Confidence 3333444332211 00 111 01111 223442222 122233343311 11121 122 3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCC--CcccccchHHHHHHHHcc--hHHHHHHHHHHHHHHHHHH
Q 019502 230 KTFPKALLGAVVLVVSSYLIPLLAGTGG-------LTSL--SSEWSDGYFAEVGMLIGG--FWLKWWIQAASAMSNLGLF 298 (340)
Q Consensus 230 k~~p~a~~~~~~i~~i~y~l~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 298 (340)
|...++++.......+...+........ -|.+ ....++.....+.+...+ +...-++..++.-+.++++
T Consensus 270 k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsL 349 (585)
T KOG2349|consen 270 KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSL 349 (585)
T ss_pred HHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4455666666655555544433332221 1111 133445555666777766 4555666667777777888
Q ss_pred HHHhhhhhHHHHH
Q 019502 299 EAEMSGDAFQLLG 311 (340)
Q Consensus 299 ~~~~~~~sR~l~~ 311 (340)
.+.+.+.|-+.+.
T Consensus 350 SS~~NS~s~v~~e 362 (585)
T KOG2349|consen 350 SSIFNSLSTVFLE 362 (585)
T ss_pred HHhhhhHHHHHHH
Confidence 8877777776653
No 103
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.36 E-value=2.6 Score=41.78 Aligned_cols=203 Identities=14% Similarity=0.154 Sum_probs=112.1
Q ss_pred cchhHHHHhhhhhcc-cccC-chhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh-hCchh
Q 019502 22 TVLPLIALIFYEVSG-GPFG-VEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA-FGPFW 98 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-gi~~-~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~-~G~~~ 98 (340)
+..|.+.-+++..+| |-+- .|......+| ++.++-+++..+++.+|.-+.---++. +-+.|..-.|=+-. .-+-+
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGG-gaFLIpY~i~l~l~GlP~~~LE~slGQ-f~~~g~v~~wrri~Pif~Gv 116 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGG-GAFLIPYLIVLFLFGLPLFFLEMSLGQ-FTSQGPVSVWRRICPIFKGV 116 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC-chHHHHHHHHHHHhcchHHHHHHHHhh-hhcCChHHHHHHhChHhcCc
Confidence 778888889998899 7443 4555555344 355788888776667766555444444 43555555554211 11333
Q ss_pred HHHHH---HHHHHHHhhhHHHHHHHHHHHHHHhchh--------------------------------------------
Q 019502 99 GFQEG---FWKWLSGVLDNALYPVLFLDYLKHSLPI-------------------------------------------- 131 (340)
Q Consensus 99 g~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 131 (340)
|+... +....+|....+......-+.+..-+|.
T Consensus 117 G~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (629)
T KOG3660|consen 117 GWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEFWENR 196 (629)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccchhhhhhhh
Confidence 33332 2333344444433333333322222221
Q ss_pred ------------hh-hhhhHHHHHHHHH-HHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCC-----cc
Q 019502 132 ------------FN-LLIARIPALLGIT-GALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR-----WL 192 (340)
Q Consensus 132 ------------~~-~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~-----~~ 192 (340)
++ ..|+. ..++.+. +++..+..+|+|..+|+.++...+-.+.++++.+-++...+... +.
T Consensus 197 ~~~~~~~~~~~~~g~~~w~L-~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~ 275 (629)
T KOG3660|consen 197 VLSLSDGSGIEDFGSINWPL-ALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLT 275 (629)
T ss_pred hcccccccccccCCCCChHH-HHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHh
Confidence 00 11233 3334444 44677888999999999998888877777776666654332211 11
Q ss_pred cc---ccCccchHHHHHHHHHhhh-hHHhhhhhhhhccC
Q 019502 193 VV---DFKKVDWRGYFNSMFWNLN-YWDKASTLAGEVEN 227 (340)
Q Consensus 193 ~~---~~~~~~~~~~~~~~~~af~-G~e~~~~~~~e~k~ 227 (340)
+. -.++..|......++++++ |+.....++...|.
T Consensus 276 ~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~ 314 (629)
T KOG3660|consen 276 PDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKF 314 (629)
T ss_pred hhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeecc
Confidence 11 1235668788777777765 66655555555443
No 104
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=90.45 E-value=17 Score=34.72 Aligned_cols=220 Identities=9% Similarity=-0.047 Sum_probs=116.6
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhh-hhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhH--
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDS-VKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI-- 90 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~-~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~-- 90 (340)
...+|+.|+|+-+.+=.+...+ +-.-..+. +..+..+.-.++..++. -.....+.-+++ ..|..|+..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG-----~~~~~~f~~lns---~~G~~yhIsFp 121 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVG-----YLFTAIFLVLNS---RPGSDYHISFP 121 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHH-----HHHHHHHHHHcc---CCCccccccee
Confidence 4567999999999887776655 43333332 33222332222222221 112333334444 345566543
Q ss_pred ---HhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchh-----------hh---hhhhHHHHHHHHHHHHHHHH
Q 019502 91 ---SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-----------FN---LLIARIPALLGITGALTYLN 153 (340)
Q Consensus 91 ---~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~ 153 (340)
|..||-+.+..--..-.+..++..++.+...++-++.+++. +. .+..++...+++-++.....
T Consensus 122 v~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 122 VLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 33455444433333344444555666666666655554431 11 12345666556666667777
Q ss_pred HhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCC-C-cc-ccccCccchHHH-HHHHHHhhhhHHh----hhhhhhhc
Q 019502 154 YRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR-R-WL-VVDFKKVDWRGY-FNSMFWNLNYWDK----ASTLAGEV 225 (340)
Q Consensus 154 ~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-~-~~-~~~~~~~~~~~~-~~~~~~af~G~e~----~~~~~~e~ 225 (340)
+++.....++..+-.++.......+.+..+.+.+.. + .. +...+...+.-. +..+...+.++.. .+.+++-.
T Consensus 202 ~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 202 WFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred eccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 888888999988888888888888888887776641 1 11 111112222211 1234455565553 44555556
Q ss_pred cCCCCcHHHHHHHHHHHH
Q 019502 226 ENPSKTFPKALLGAVVLV 243 (340)
Q Consensus 226 k~p~k~~p~a~~~~~~i~ 243 (340)
|+|++ .+...+.++.+.
T Consensus 282 ksp~a-~~~~Ql~alp~~ 298 (572)
T KOG2466|consen 282 KSPNA-IWWGQLIALPLP 298 (572)
T ss_pred CCCCc-cchhhhhhhhhh
Confidence 77643 445555544443
No 105
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=90.28 E-value=15 Score=35.90 Aligned_cols=123 Identities=7% Similarity=0.031 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccccCCCc--ccc--cc----CccchHHHHHH
Q 019502 136 IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRW--LVV--DF----KKVDWRGYFNS 207 (340)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~--~~~--~~----~~~~~~~~~~~ 207 (340)
|...+..+.+.++.....++|.|..+|+..+.+.+-.+++.++.+-+.-..+..+. ... +. ++..|...-..
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtq 331 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQ 331 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHH
Confidence 34455555666667788999999999987666655544444444434321111111 111 11 24456666666
Q ss_pred HHHh-hhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019502 208 MFWN-LNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLT 259 (340)
Q Consensus 208 ~~~a-f~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~ 259 (340)
++++ ..|+.....++...|-- .|.-|-.++.-++..+.+++..+++...++
T Consensus 332 iffslg~GfG~L~AfaSyn~F~-NNc~rDAll~S~in~~ts~~sgfviFsvLg 383 (629)
T KOG3659|consen 332 IFFSLGPGFGVLIAFASYNKFH-NNCYRDALLTSIINCLTSFLSGFVIFSVLG 383 (629)
T ss_pred HHhhcCccchhhhhhhhhcccc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 44888888888776653 456666666667777777777777666544
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=89.18 E-value=21 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Q 019502 282 LKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (340)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 314 (340)
+..++....++..+....+..-+.+..+-.++.
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s 386 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSS 386 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 555666666666666777777777777776644
No 107
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=88.42 E-value=20 Score=32.96 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=61.6
Q ss_pred cCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCC-CchhhhHHhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLI-WSIPEALITAELATSFPEN-GGYVIWISSA 93 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~-~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~ 93 (340)
+--..+.+-++.-=+.++.| |+..-|..... -|+.-. +-|++.|.+ ..-.-=+.-.-. ...++ -+.-+.+++-
T Consensus 48 DYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~-~GwlPa-~lWI~~G~if~GaVHD~~sl~~--SvR~~G~Si~~i~~~~ 123 (376)
T PF02554_consen 48 DYVPTNKWVLFGHHFASIAGAGPIVGPILAAQ-FGWLPA-LLWIVFGCIFAGAVHDYGSLMA--SVRHKGKSIGEIAGKY 123 (376)
T ss_pred CCCCCchHHhhHHHHHHHhccccchHHHHHHH-hcchHH-HHHHHHccHHHHHHHHHHHHhh--hhcCCCccHHHHHHHH
Confidence 34556778888888899999 76544443333 566522 225554432 122222222222 23333 3778888999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDY 124 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 124 (340)
.||+.+.+..+..++..++..++.+...++.
T Consensus 124 lG~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 124 LGKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777666665555444433
No 108
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=88.09 E-value=26 Score=33.85 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred chHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC-CchHHHhh
Q 019502 268 GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG-MLPAIFAS 324 (340)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~-~lP~~~~~ 324 (340)
++-..+++....-++..+..+..++..+.-..+..-+.+-++-.++.++ .-|+.+-|
T Consensus 389 ~~e~alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r 446 (537)
T COG1292 389 GPETALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVR 446 (537)
T ss_pred chhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHH
Confidence 3444455544444566666666666666667777888888888888655 55655544
No 109
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=87.00 E-value=31 Score=33.45 Aligned_cols=35 Identities=6% Similarity=-0.220 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 282 LKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
+..++.+..++..+....+..-+.+.++-.++.+|
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g 437 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCRE 437 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 55566666667777777777788888888887755
No 110
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=85.70 E-value=31 Score=32.17 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=62.2
Q ss_pred hhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 88 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
+.+++.+|+..+.+.+....++............+++++..++. .+...+ .++..+....+...|.+..-++..-.
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--~~y~~~--v~~~~l~s~~ia~~Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--LSYKTW--VIVFTLFSFIVANLGLTQIISISIPV 334 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHH--HHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 56778999999999999999988888888888899999988763 222222 34555666666667887776655444
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019502 168 LVFSLCPFVVMGILSIP 184 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~ 184 (340)
..+..-..+..++.++.
T Consensus 335 L~~~YP~~i~lill~ll 351 (378)
T TIGR00796 335 LMIIYPLAIVLILLSFL 351 (378)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 43333333334444433
No 111
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=81.89 E-value=53 Score=31.97 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=61.7
Q ss_pred CcccchhHHHHhhhhhcc-cccCchhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCC-CchhhhHHh
Q 019502 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGG-PLLSLLGFLIFPLIWSIPEALITAELAT---SFPEN-GGYVIWISS 92 (340)
Q Consensus 19 r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g-~~~~~~~~~i~~~~~~~~~~~~~~el~~---~~p~~-Gg~y~~~~~ 92 (340)
-..+.+-++.-=+.++.| |+..-|....+ .| +...+ |++.|.+ .+-+.-+... ...+. -+.-+.+++
T Consensus 50 VPtnk~vlfGhHFaaIAGAGPivGPvlAAq-~G~Lp~~L--WIl~G~V----faGaVhD~~~L~~SvR~~G~Si~~ia~~ 122 (575)
T COG1966 50 VPTNKWVLFGHHFASIAGAGPIVGPALAAQ-YGWLPAFL--WILLGCV----FAGAVHDYFSLMLSVRHGGKSIGEIAGK 122 (575)
T ss_pred ccCCchhhhHHHHHHHhccCcchhHHHHHH-hcCcHHHH--HHHHhhh----hhhhhhhhhheeeeeccCCccHHHHHHH
Confidence 445777778888888999 87766665555 55 33322 5554443 2323233222 22233 367788888
Q ss_pred hhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019502 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLK 126 (340)
Q Consensus 93 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (340)
-+||..+.+.....++--....++.+...+..+.
T Consensus 123 ~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 123 YLGRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999888877666666666666655555443
No 112
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=81.76 E-value=46 Score=31.17 Aligned_cols=54 Identities=4% Similarity=-0.179 Sum_probs=36.3
Q ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhh
Q 019502 270 FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFAS 324 (340)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~ 324 (340)
..+..+...|++...++.+..+.+.+++..+...+..-+.... .+.-.|+++.+
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf-l~~~~~~~~r~ 335 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF-LNWRWSPWLRR 335 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHH
Confidence 4556667788888899999999988888888777655444333 33333544443
No 113
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=76.29 E-value=72 Score=30.28 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=64.8
Q ss_pred hhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHH
Q 019502 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (340)
Q Consensus 88 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (340)
+.+++.+|+....+.+....++..-+.-......++|+++.++. -++..++ .++.++...+...|.+..-++..-.
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--isY~~~v--~i~~i~S~~ian~Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--ISYKVWV--IIFTIFSFIIANLGLDQIIKISVPI 340 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cChHHHH--HHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 35667899999999999988887777777888899999999872 2233332 4666777888888888776666554
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019502 168 LVFSLCPFVVMGILSIP 184 (340)
Q Consensus 168 ~~~~~~~l~~~~i~~~~ 184 (340)
..+.-=..+++++.++.
T Consensus 341 L~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 341 LMFIYPVAIVLILLNLF 357 (427)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44333344444455544
No 114
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=75.42 E-value=85 Score=30.72 Aligned_cols=254 Identities=16% Similarity=0.127 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-C-CCCCchhhhH---HhhhCchhHHHHHH------HHHHHHhhhHHHHHHHHHHH
Q 019502 56 LGFLIFPLIWSIPEALITAELATS-F-PENGGYVIWI---SSAFGPFWGFQEGF------WKWLSGVLDNALYPVLFLDY 124 (340)
Q Consensus 56 ~~~~i~~~~~~~~~~~~~~el~~~-~-p~~Gg~y~~~---~~~~G~~~g~~~g~------~~~~~~~~~~~~~~~~~~~~ 124 (340)
++.++-.+ .+++..-|.-+..+ . .++||..... +|..+|+..++... .+.-..++..+....++.|-
T Consensus 59 lSLi~WtL--tlIVTiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEG 136 (627)
T COG3158 59 LSLIIWTL--TLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEG 136 (627)
T ss_pred HHHHHHHH--HHHHHHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhcc
Confidence 44444333 33344444444443 3 3458887754 45555554444333 23333455567777777777
Q ss_pred HHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhccc--cCCCcccccc------
Q 019502 125 LKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI--KPRRWLVVDF------ 196 (340)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~--~~~~~~~~~~------ 196 (340)
+...-|.+++ ....+++++++....+.-+|...++++. ..++++=...+...|+.+. +|+-....++
T Consensus 137 L~iv~p~~~~--~Vvpitl~IL~~LF~iQ~~GT~~Vg~~F---GPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~f 211 (627)
T COG3158 137 LEIVTPALDP--YVVPITLIILVLLFLIQRFGTGRVGKLF---GPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHF 211 (627)
T ss_pred ccccCccccC--ccHHHHHHHHHHHHHHhcccchhhhhhh---ccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHH
Confidence 7665554442 3334456666666777777776666554 4444443334444444332 2222222110
Q ss_pred -CccchHHH--HHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHH
Q 019502 197 -KKVDWRGY--FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEV 273 (340)
Q Consensus 197 -~~~~~~~~--~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~ 273 (340)
...++.+. +..++.+-.|-|+.-.--+-.- +|.+.++=+.-.. =-++.++..++++--++.+...+|
T Consensus 212 l~~~~~~gf~vLGaVfLavTGaEALYADmGHfG--r~pI~~AWf~vv~----P~L~LNY~GQGA~vL~~p~a~~np---- 281 (627)
T COG3158 212 LLEEGFVGFFVLGAVFLAVTGAEALYADMGHFG--RKPIRVAWFFVVL----PCLLLNYFGQGALLLSNPEAIGNP---- 281 (627)
T ss_pred HHhCCceEEEEeeeeeeeeccHHHHHhhccccC--CccHHHHHHHHHH----HHHHHHHccccceeccCcccccCc----
Confidence 01122221 2345677789997644444333 3555544332222 011122222222211112222334
Q ss_pred HHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchH-HHhhcc
Q 019502 274 GMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRC 326 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~ 326 (340)
+....++|..+-+.+.+..++.-..++...+.--+..+.-|-|.+|+ ...+.+
T Consensus 282 FF~~~P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TS 335 (627)
T COG3158 282 FFLLAPDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTS 335 (627)
T ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecC
Confidence 33555666655555555555555555666665556666678899995 344444
No 115
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=65.22 E-value=1.3e+02 Score=28.68 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=63.3
Q ss_pred hHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHH
Q 019502 89 WISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (340)
Q Consensus 89 ~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (340)
.+++.+|+....+.+...++...-+........+++++..++ . + ......++..+...+...|.+..-++..-..
T Consensus 270 ~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i--s--Y~~~v~i~~l~S~~lSn~G~~~II~~s~PiL 344 (439)
T PRK15433 270 YVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L--S--YRTLVFILGGFSMVVSNLGLSQLIQISVPVL 344 (439)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--c--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466789999999999999999888888888889999998875 1 1 2223356677777788888887766665544
Q ss_pred HHHHHHHHHHHHHHhc
Q 019502 169 VFSLCPFVVMGILSIP 184 (340)
Q Consensus 169 ~~~~~~l~~~~i~~~~ 184 (340)
...-=..+++++.++.
T Consensus 345 ~~iYP~~IvLill~l~ 360 (439)
T PRK15433 345 TAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 4333333444445554
No 116
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=54.73 E-value=1.4e+02 Score=28.95 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhhHHhhhCchhHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHhchhhhhhhhH
Q 019502 65 WSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSG------VLDNALYPVLFLDYLKHSLPIFNLLIAR 138 (340)
Q Consensus 65 ~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
++...+.+|+..+.++.+..-..+...+......++++-....... -=.....+...++.++.. +.+.
T Consensus 306 ~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~------~~~~ 379 (502)
T PF03806_consen 306 FFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL------GLPG 379 (502)
T ss_pred HHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc------CCCc
Confidence 4778899999999999998888888888886666655443222211 111233344445555433 1233
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHh
Q 019502 139 IPALLGITGALTYLNYRGLHIVGFSA 164 (340)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (340)
....+.++++.+.+|++=...++|..
T Consensus 380 ~~l~i~fill~a~iNLfi~S~SaKWa 405 (502)
T PF03806_consen 380 IPLIIGFILLTAFINLFIGSASAKWA 405 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHH
Confidence 33446778888889988555555543
No 117
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=53.80 E-value=2e+02 Score=27.17 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=55.3
Q ss_pred hhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHH
Q 019502 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (340)
Q Consensus 88 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (340)
+++++.+|+.-..+.+.+..+....+........+||++...|.++ +..+ ..++..+...+.-.|.+..-++..-
T Consensus 267 ~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S--Y~~~--v~if~i~sflvan~GL~~Ii~isvP 341 (431)
T COG1114 267 AYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS--YKTW--VIIFTLISFLVANLGLEQIIKISVP 341 (431)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHH--HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4677889999999999998888777777788889999999998432 2222 2466666677777787776665543
No 118
>PRK15015 carbon starvation protein A; Provisional
Probab=49.14 E-value=3e+02 Score=27.81 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=61.0
Q ss_pred cchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCC-CchhhhHHhhhCc
Q 019502 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT---SFPEN-GGYVIWISSAFGP 96 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~---~~p~~-Gg~y~~~~~~~G~ 96 (340)
+.+-++.==++++.| |+..-|....+ -|+.-. .-|++.|.+ .+-..-++.. ...++ -+.-+.+++-.||
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~-~GwlP~-~LWIl~G~v----f~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~ 157 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQ-MGYLPG-MIWLLAGVV----LAGAVQDFMVLFVSTRRDGRSLGELVKEEMGP 157 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHH-HcchHH-HHHHHHcce----eechhhhhhheeeeecCCCccHHHHHHHHhhH
Confidence 445566666778888 77666554444 666532 236665543 2222223322 23333 3778888999999
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 019502 97 FWGFQEGFWKWLSGVLDNALYPVLFLDYLK 126 (340)
Q Consensus 97 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 126 (340)
+.+.......++.-++..++.+...+..+.
T Consensus 158 ~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 158 TAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998887777777777766666665553
No 119
>PTZ00206 amino acid transporter; Provisional
Probab=46.18 E-value=1.7e+02 Score=28.09 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=46.4
Q ss_pred cchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHh
Q 019502 267 DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323 (340)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~ 323 (340)
.....++.+..+|++...+..+..++..+++..+++......+...-++...|+++.
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 346889999999999999999999999999999999999988776655444455554
No 120
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=45.26 E-value=1.8e+02 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Q 019502 229 SKTFPKALLGAVVLVVSSYLIPLL 252 (340)
Q Consensus 229 ~k~~p~a~~~~~~i~~i~y~l~~~ 252 (340)
|.+..|.+..+..+-.+-..+..+
T Consensus 97 k~~~~~~l~~Gl~~nl~Gmllt~l 120 (183)
T PF12263_consen 97 KADVVRLLRIGLIINLVGMLLTLL 120 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666655554444333
No 121
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=38.24 E-value=4e+02 Score=26.18 Aligned_cols=60 Identities=13% Similarity=-0.105 Sum_probs=35.1
Q ss_pred HHHHHHHHHHH-HHhccCCCCCc--hhhhHHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019502 64 IWSIPEALITA-ELATSFPENGG--YVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLD 123 (340)
Q Consensus 64 ~~~~~~~~~~~-el~~~~p~~Gg--~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 123 (340)
++.++.+++.. .+....-++.| .-++-.+..||+.+....-...+...+...+.....+-
T Consensus 302 ~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR 364 (550)
T KOG1289|consen 302 IIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSR 364 (550)
T ss_pred HHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHH
Confidence 34666777777 66666654422 34566788999888655555555544444443343333
No 122
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=36.93 E-value=51 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=24.3
Q ss_pred hhhhccCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 221 LAGEVENPS-KTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 221 ~~~e~k~p~-k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
-.|-.+||| |+.||+++.+.+.+.++-++....
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346678886 679999999988887766655443
No 123
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=34.92 E-value=3.3e+02 Score=24.22 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=31.8
Q ss_pred HHHHhhhhHHhhhhhhh---hccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019502 207 SMFWNLNYWDKASTLAG---EVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGG 257 (340)
Q Consensus 207 ~~~~af~G~e~~~~~~~---e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~~~~~ 257 (340)
...|.+.|......+.+ |.|+.+|+..|...++.++...+-+=........
T Consensus 177 a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~ 230 (281)
T PF06454_consen 177 ALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSA 230 (281)
T ss_pred HHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34577788887777776 6666666677766666666555444444433333
No 124
>PHA03164 hypothetical protein; Provisional
Probab=31.26 E-value=47 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.2
Q ss_pred hhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 221 LAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 221 ~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
...|.+|-+|+...-++.+++++.+++++..+-
T Consensus 47 awnlwnnrRktftFlvLtgLaIamILfiifvly 79 (88)
T PHA03164 47 AWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLY 79 (88)
T ss_pred hHHHHHhhhheeehHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888998888887765543
No 125
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=25.09 E-value=99 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=22.4
Q ss_pred hhhccCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Q 019502 222 AGEVENPS-KTFPKALLGAVVLVVSSYLIPLLA 253 (340)
Q Consensus 222 ~~e~k~p~-k~~p~a~~~~~~i~~i~y~l~~~~ 253 (340)
.|-.+||| |+.||+++.+++...+.-++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45678885 679999998887776655554433
No 126
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=24.45 E-value=2.1e+02 Score=18.54 Aligned_cols=46 Identities=9% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 019502 204 YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (340)
Q Consensus 204 ~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~~~ 252 (340)
.+..++|+|.|-..-.+.-++.++. + |.-.+++-++.+++++...+
T Consensus 4 ~~~sVl~af~GVqs~~~~e~Df~~~-~--p~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 4 VVKSVLWAFFGVQSSKNRERDFAQG-S--PVHFIIVGIILAALFVAGLV 49 (56)
T ss_pred HHHHHHHHHhCcCcchhHHHHHHcC-C--CchHHHHHHHHHHHHHHHHH
Confidence 3445689999999888888887664 2 44455554444444444333
No 127
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.86 E-value=2.7e+02 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.129 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHhHHHHHHHHHHHHHHHHHHhc
Q 019502 143 LGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIP 184 (340)
Q Consensus 143 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 184 (340)
..++++...+|+.|+|..+.........+++.++.+++.++.
T Consensus 160 ~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iV 201 (554)
T KOG1286|consen 160 PDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIV 201 (554)
T ss_pred HHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhhee
Confidence 444555555555555555555555555555555555555444
Done!