Query 019502
Match_columns 340
No_of_seqs 126 out of 1266
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 17:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 8.1E-48 2.8E-52 363.8 27.3 321 15-338 4-330 (445)
2 3gia_A Uncharacterized protein 100.0 1.7E-44 5.8E-49 341.0 25.3 319 16-338 3-327 (444)
3 4djk_A Probable glutamate/gamm 100.0 4.1E-42 1.4E-46 330.3 25.5 322 12-338 4-345 (511)
4 2jln_A MHP1; hydantoin, transp 99.0 1.1E-07 3.7E-12 90.3 25.9 290 15-313 21-330 (501)
5 2xq2_A Sodium/glucose cotransp 98.3 0.00012 4.1E-09 70.9 21.7 282 18-309 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.1 0.00036 1.2E-08 66.6 19.7 283 17-309 18-348 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.8 0.011 3.6E-07 55.9 23.9 225 22-249 10-292 (519)
8 4ain_A Glycine betaine transpo 93.6 2.7 9.4E-05 39.4 15.7 152 16-170 91-275 (539)
9 2wsw_A BCCT family betaine/car 88.9 15 0.00051 34.2 22.0 35 282-316 408-442 (509)
10 2jln_A MHP1; hydantoin, transp 25.3 4E+02 0.014 24.4 10.3 57 21-81 33-91 (501)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=8.1e-48 Score=363.78 Aligned_cols=321 Identities=19% Similarity=0.274 Sum_probs=283.5
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
++++|++++++++++.+++++| |+|..|..+.. +|+. .+++|++++++ .++.+++++|+++++|++||.|+|++|.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 3568999999999999999999 89988887766 6776 47889998885 8999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
+||+.|+..+|.+++++....+......+++++.++|..+.+++..+++++++++.+++|++|+|..+|++.+...++++
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988886655677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCccccccC-----ccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 019502 174 PFVVMGILSIPRIKPRRWLVVDFK-----KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (340)
Q Consensus 174 ~l~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~ 248 (340)
.++++++.++.+.+++++.+...+ ..++...+...+|+|.|+|...+++||+|||+|++||+++.+..+.+++|+
T Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~ 240 (445)
T 3l1l_A 161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240 (445)
T ss_dssp HHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 888888888776665554322111 122334456788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcccccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCC
Q 019502 249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLY 328 (340)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~ 328 (340)
+..++.....|+++..+++.|+.+..++..+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~ 320 (445)
T 3l1l_A 241 LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA 320 (445)
T ss_dssp HHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT
T ss_pred HHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC
Confidence 99999999999988877888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeEe
Q 019502 329 NGLLVTLRIK 338 (340)
Q Consensus 329 ~~P~~a~~~~ 338 (340)
++|+++++++
T Consensus 321 ~~P~~a~~~~ 330 (445)
T 3l1l_A 321 GTPVAGLIIV 330 (445)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999998654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.7e-44 Score=340.96 Aligned_cols=319 Identities=18% Similarity=0.177 Sum_probs=276.4
Q ss_pred ccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
++||+++++|++++++++++| |++..++.....+|+. .+++|++++++ .++.+++++|+++++|++||.|+|++|.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~-~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN-LPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG-HHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 468999999999999999999 9998887665547875 47889998885 99999999999999999999999999999
Q ss_pred Cch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 95 GPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 95 G~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
||+ .+...+|.++++|....+.++...+++++..++..++++...+++++++++.+++|++|+|..+|++.+...+++.
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 996 3555689999999999999999999999988875444455667778889999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCccccccCccchHHHH---HHHHHhhhhHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHH
Q 019502 174 PFVVMGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (340)
Q Consensus 174 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l~ 250 (340)
.++++++.++.+.+++++.+.. .+.+|.+.+ ...+|+|.|+|..++++||+|||+|++||+++.+..+..++|++.
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~ 239 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGV 239 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCCC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCCC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHH
Confidence 9988888888777766665532 234444443 345799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCccc-ccchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCCchHHHhhccCCC
Q 019502 251 LLAGTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRCLYN 329 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~ 329 (340)
.++.....|++++.+ ++.|+.+..+...+++...++.+..+++.+++.++.+.+.+|++++|||||.+|++|+|+|| +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~-~ 318 (444)
T 3gia_A 240 AISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-F 318 (444)
T ss_dssp HHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC-C
T ss_pred HHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC-C
Confidence 999999888877543 45688888988888989999999999999999999999999999999999999999999996 5
Q ss_pred CcceeeeEe
Q 019502 330 GLLVTLRIK 338 (340)
Q Consensus 330 ~P~~a~~~~ 338 (340)
+|+++++++
T Consensus 319 ~P~~a~~~~ 327 (444)
T 3gia_A 319 KSTEGLYIT 327 (444)
T ss_dssp SCTHHHHHH
T ss_pred CCcHHHHHH
Confidence 699987653
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=4.1e-42 Score=330.26 Aligned_cols=322 Identities=20% Similarity=0.217 Sum_probs=245.4
Q ss_pred ccccccCCcccchhHHHHhhhhhcccccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCchhhh
Q 019502 12 QKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT--SFPENGGYVIW 89 (340)
Q Consensus 12 ~~~~~~~r~l~~~~~~~l~~~~~~ggi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~--~~p~~Gg~y~~ 89 (340)
+++++++|+++++++++++++.++| +++.+. .. .+|+.. ++.+++.+++..++.+++++|+++ ++| +||.|+|
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~-~~G~~~-~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMA-VYEYPT-FA-TSGFSL-VFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCC-GGGHHH-HH-TTTTHH-HHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred cccCccCccccHHHHHHHHHHHHHh-hchhHH-HH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 4456789999999999999998876 444444 23 377765 455555555435679999999999 999 9999999
Q ss_pred HHhhhCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--chhhh-hhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHH
Q 019502 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS--LPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (340)
Q Consensus 90 ~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (340)
++|.+||+.|+..+|.+++++....+......+++++.+ .|.+. ++++..+++++++++.+++|++|+|..++++.+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 158 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKV 158 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999999999988888888888776 45443 345677788899999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHhccccCC-------Ccccccc--CccchHHHHHHHHHhhhhHHhhhhhhhhccCCCCcHHHHH
Q 019502 167 LLVFSLC-PFVVMGILSIPRIKPR-------RWLVVDF--KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (340)
Q Consensus 167 ~~~~~~~-~l~~~~i~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~k~~p~a~ 236 (340)
...++++ .++++++.++.....+ ++.+... ...+....+...+|+|.|+|...+++||+|||+|++||++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai 238 (511)
T 4djk_A 159 GFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM 238 (511)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHH
Confidence 8777544 3444555554322111 1111111 1122223456678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcccccch---HHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019502 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGY---FAEVGMLIG--GFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (340)
Q Consensus 237 ~~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 311 (340)
+.+..+..++|++..++....+|+++...++.+ +....+..+ .++...++.+..+++.+++.++.+.+.+|++++
T Consensus 239 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 318 (511)
T 4djk_A 239 LLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYV 318 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886644332 222222333 367888999999999999999999999999999
Q ss_pred hhhcCCchHHHhhccCCCCcceeeeEe
Q 019502 312 MSEMGMLPAIFASRCLYNGLLVTLRIK 338 (340)
Q Consensus 312 ~a~d~~lP~~~~~~~~~~~P~~a~~~~ 338 (340)
+||||.+|++|+|+||+++|+++++++
T Consensus 319 ~ardg~lP~~~~~~~~~~~P~~ai~~~ 345 (511)
T 4djk_A 319 TAQKNLLPAAFAKMNKNGVPVTLVISQ 345 (511)
T ss_dssp HHHGGGCSSSCCCCCSSSCCCHHHHHH
T ss_pred HccCCcccHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999998754
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.05 E-value=1.1e-07 Score=90.33 Aligned_cols=290 Identities=10% Similarity=-0.041 Sum_probs=162.6
Q ss_pred cccCCcccchhHHHHhhhhhcc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhh
Q 019502 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (340)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 93 (340)
.+++|+.++++.+.+=++..+. +.+........+.+....+++.++..++ ........+..+.++-- ......+..
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li-~~~~~~l~~~~G~~~Gl--~~~v~~R~~ 97 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTI-AVILLFFTQSAAIRWGI--NFTVAARMP 97 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHCC--CHHHHTTTT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHH-HHHHHHHHhHHHhhcCC--ChhhhhHhh
Confidence 3467889999999888887766 4444433333223333334444444433 22223333444444322 255678889
Q ss_pred hCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 94 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
||++.+.+......+..+...+......++.++..+..+-...+.++..+++.++...+.+.|.|...+++.+..++.++
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i 177 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLA 177 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888877777777665532110111344445566677888899999999999998888777
Q ss_pred HHHHHHHHHhccccC--CCcccc--ccCccchHHHHHH-HHHhhhhHHhhhhhhhhccCCCCc-----------HHHHHH
Q 019502 174 PFVVMGILSIPRIKP--RRWLVV--DFKKVDWRGYFNS-MFWNLNYWDKASTLAGEVENPSKT-----------FPKALL 237 (340)
Q Consensus 174 ~l~~~~i~~~~~~~~--~~~~~~--~~~~~~~~~~~~~-~~~af~G~e~~~~~~~e~k~p~k~-----------~p~a~~ 237 (340)
..+.+.+..+.+.+. ++.... .....++...+.. +-+...+.-..+.++.+.|++++. .-++..
T Consensus 178 ~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~ 257 (501)
T 2jln_A 178 MGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQW 257 (501)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHH
Confidence 766665555443321 111111 1112234443332 122223345577888899886441 334444
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccccchHHHHHHHHcchHH-HHHHH-HHHHHHHHHHHH-HHhhhhhHHHHHhh
Q 019502 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWL-KWWIQ-AASAMSNLGLFE-AEMSGDAFQLLGMS 313 (340)
Q Consensus 238 ~~~~i~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~sR~l~~~a 313 (340)
.+..+..++..+........ ....+|...+.+...++.. ..+.. +..+++.+++.. ...++.+--+..+.
T Consensus 258 lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~ 330 (501)
T 2jln_A 258 LGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTF 330 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 44444443333333322221 1223455555443433333 55566 666777766655 35666666665553
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.28 E-value=0.00012 Score=70.90 Aligned_cols=282 Identities=12% Similarity=-0.041 Sum_probs=143.1
Q ss_pred CCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhhC
Q 019502 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (340)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~G 95 (340)
.|+++++....-.+++..+ ..++.++.... .|.....+.|. ..+ ..+..++.+...-++. +.-..++|.++-||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~-~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAI-TLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHH-HHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHH-HHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 5899988766666566666 35677776655 45432222221 111 1233444444544444 33479999999999
Q ss_pred chhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHHH
Q 019502 96 PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (340)
Q Consensus 96 ~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 174 (340)
++...+.+....+.+. ...+......+..++..++. + ......+...+...+....|.|.+.+...+=.++.++.
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-~---~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-P---LMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-c---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9988887766555444 34555556666666666541 1 11222233344467777788887655555544444443
Q ss_pred HHHHHHHHhcccc----------------CCCccccccCc-------cchHHHHH---HHHHhhhhHH-hhhhhhhhccC
Q 019502 175 FVVMGILSIPRIK----------------PRRWLVVDFKK-------VDWRGYFN---SMFWNLNYWD-KASTLAGEVEN 227 (340)
Q Consensus 175 l~~~~i~~~~~~~----------------~~~~~~~~~~~-------~~~~~~~~---~~~~af~G~e-~~~~~~~e~k~ 227 (340)
.+++.+.++...+ ++.+.....++ ..|...+. .....+.|.+ ....-.=+.||
T Consensus 200 ~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks 279 (593)
T 2xq2_A 200 GFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 279 (593)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCC
Confidence 3333332221111 11111100000 11222221 1112233332 12223336788
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH---HHHHhc-cC--------------CCCcccccchHHHHHHHHcchHHHHHHHHH
Q 019502 228 PSKTFPKALLGAVVLVVSSYLIPL---LAGTGG-LT--------------SLSSEWSDGYFAEVGMLIGGFWLKWWIQAA 289 (340)
Q Consensus 228 p~k~~p~a~~~~~~i~~i~y~l~~---~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (340)
+ |+..|+.+.+.....+..++.. +..... .+ ..+..+++..+..+. ...++++.-++...
T Consensus 280 ~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a~ 357 (593)
T 2xq2_A 280 V-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFAA 357 (593)
T ss_dssp H-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHHH
Confidence 6 7789998887766444333221 111111 00 112333455566666 77888888888888
Q ss_pred HHHHHHHHHHHHhhhhhHHH
Q 019502 290 SAMSNLGLFEAEMSGDAFQL 309 (340)
Q Consensus 290 ~~~~~~~~~~~~~~~~sR~l 309 (340)
.+.+..++..+.+.+.+-++
T Consensus 358 llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 358 LAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777766553
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.06 E-value=0.00036 Score=66.59 Aligned_cols=283 Identities=12% Similarity=-0.034 Sum_probs=142.1
Q ss_pred cCCcccchhHHHHhhhhhcc--cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhhHHhhh
Q 019502 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (340)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~g--gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 94 (340)
-.|+++++....-.+++.++ ...+.|+.... .|.....+.|. .++ ..+..++.+...-++. +.-..++|.++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~-~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAI-TLIIVGKYFLPIFIEK-GIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHH-HHHHHHHHTHHHHHHT-TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHH-HHHHHHHHHHHHHHHc-CCccHHHHHHHHc
Confidence 46999999988888877777 46677776655 45432222222 112 1233444444444444 3357999999999
Q ss_pred CchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhcchhHHHHhHHHHHHHHH
Q 019502 95 GPFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (340)
Q Consensus 95 G~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 173 (340)
|++...+.+....+.+. ...+......+..++..++ .+ ....+.+...+...+....|.|.+.+...+=.++.++
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~---~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~ 169 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IP---LMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVL 169 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CC---HHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99988887776655444 3345555555666666654 11 1121222333335566666777665555544444443
Q ss_pred HHHHHHHHHhccc----------------cCCCcccc---ccC----ccchHHHHHHH---HHhhhhHHh-hhhhhhhcc
Q 019502 174 PFVVMGILSIPRI----------------KPRRWLVV---DFK----KVDWRGYFNSM---FWNLNYWDK-ASTLAGEVE 226 (340)
Q Consensus 174 ~l~~~~i~~~~~~----------------~~~~~~~~---~~~----~~~~~~~~~~~---~~af~G~e~-~~~~~~e~k 226 (340)
..+++.+.++... +++++... +.+ ..++...+... -..|.|.+- ...=.=..|
T Consensus 170 g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laak 249 (530)
T 3dh4_A 170 GGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAK 249 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 3333222222111 11111110 000 01122111111 122333221 111112357
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH---HHHHHhccCC---------------CCcccccchHHHHHHHHcchHHHHHHHH
Q 019502 227 NPSKTFPKALLGAVVLVVSSYLIP---LLAGTGGLTS---------------LSSEWSDGYFAEVGMLIGGFWLKWWIQA 288 (340)
Q Consensus 227 ~p~k~~p~a~~~~~~i~~i~y~l~---~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (340)
|+ |+..|+.+.+.....+..++. .++.....++ .+..+++..+..+.+ ..++++.-++..
T Consensus 250 s~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~lp~~l~Gl~~a 327 (530)
T 3dh4_A 250 SV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FLPVGVKGVVFA 327 (530)
T ss_dssp CH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TCCTTHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-HcchhHHHHHHH
Confidence 75 678888888766543322111 1111111100 123445566666666 788888888888
Q ss_pred HHHHHHHHHHHHHhhhhhHHH
Q 019502 289 ASAMSNLGLFEAEMSGDAFQL 309 (340)
Q Consensus 289 ~~~~~~~~~~~~~~~~~sR~l 309 (340)
..+.+..++..+.+.+.+-.+
T Consensus 328 ~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 328 ALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 888888888888777777653
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.78 E-value=0.011 Score=55.88 Aligned_cols=225 Identities=16% Similarity=0.091 Sum_probs=127.6
Q ss_pred cchhHHHHhhhhhcc-c-ccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCchhhhHHhhhC-
Q 019502 22 TVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT---SFPENGGYVIWISSAFG- 95 (340)
Q Consensus 22 ~~~~~~~l~~~~~~g-g-i~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~---~~p~~Gg~y~~~~~~~G- 95 (340)
|..+.+.-+++..+| | +.=.|....+.+| ++.++-++++.++..+|..+.=.-+++ +..+.|..-.|-+ .-.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGG-gAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~-l~~~ 87 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGG-GAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL-LWRN 87 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTT-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH-HSCS
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH-hcCC
Confidence 566777778888899 7 4445555666344 455777777665555555444333444 1334444444422 111
Q ss_pred ---chhHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHhch---------------------h-hhh----------hhh
Q 019502 96 ---PFWGF---QEGFWKWLSGVLDNALYPVLFLDYLKHSLP---------------------I-FNL----------LIA 137 (340)
Q Consensus 96 ---~~~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~----------~~~ 137 (340)
+..|+ +.......+|....+.........+..-+| . ++. .+.
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 22222 233333344444433333322222222111 0 000 144
Q ss_pred HHHHHHHHHHHHHHHHHhcc-hhHHHHhHHHHHHHHHHHHHHHHHHhccccCC--C-------cccccc---CccchHHH
Q 019502 138 RIPALLGITGALTYLNYRGL-HIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR--R-------WLVVDF---KKVDWRGY 204 (340)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--~-------~~~~~~---~~~~~~~~ 204 (340)
..+.-+++.++...+..+|+ |...|+.++......+.++++.+-++...+|+ . +.|... ++..|...
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A 247 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHH
Confidence 44444566667788889999 67999999999888887777777666543321 0 112111 12347777
Q ss_pred HHHHHHhhh-hHHhhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q 019502 205 FNSMFWNLN-YWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (340)
Q Consensus 205 ~~~~~~af~-G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~i~y~l 249 (340)
...++|+.+ |+.....++...|+ +.|++|..+.....-...-++
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 788888877 99999999999988 467788766665554444333
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=93.59 E-value=2.7 Score=39.43 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred ccCCcccchhHHHHhhhhhcc-ccc--Cchhhhh-hc-----CCh-----H-------HHHHHHHHHHHHHHHHHHHHHH
Q 019502 16 KTSPKLTVLPLIALIFYEVSG-GPF--GVEDSVK-AG-----GGP-----L-------LSLLGFLIFPLIWSIPEALITA 74 (340)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~g-gi~--~~~~~~~-~~-----~g~-----~-------~~~~~~~i~~~~~~~~~~~~~~ 74 (340)
+.|.+.|.++=+++.++.=+| |+. +....+. .. ..+ . +.+..|.+-+++ .+.+++.
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~-glalaY~-- 167 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIV-GLAIAYS-- 167 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHH-HHHHHCC--
T ss_pred CCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHHH--
Confidence 456778888888888887777 642 2111111 00 000 0 233456555543 4433332
Q ss_pred HHhccCCCC--CchhhhHHhh-hCchhHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHhchhh-hhhhhHHHHHHHHH
Q 019502 75 ELATSFPEN--GGYVIWISSA-FGPFWGFQEGFWKWLSGVLDNALYPVLFL----DYLKHSLPIF-NLLIARIPALLGIT 146 (340)
Q Consensus 75 el~~~~p~~--Gg~y~~~~~~-~G~~~g~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~ 146 (340)
-..+..|-. ...|-...+. ...+.|........++.+++.+...-..+ .-++.++... ++...+..+..++.
T Consensus 168 ~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit 247 (539)
T 4ain_A 168 TFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLT 247 (539)
T ss_dssp CCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHH
T ss_pred HhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 223444433 2344444322 22345666666666665555444333322 2233444322 12223333334444
Q ss_pred HHHHHHHH----hcchhHHHHhHHHHHH
Q 019502 147 GALTYLNY----RGLHIVGFSAVSLLVF 170 (340)
Q Consensus 147 ~~~~~~~~----~g~~~~~~~~~~~~~~ 170 (340)
++.++-.. +|+|..+++|..+...
T Consensus 248 ~i~~~Sa~sGl~kGIk~LS~~N~~La~~ 275 (539)
T 4ain_A 248 LAFIFSAISGVGKGIQYLSNANMVLAAL 275 (539)
T ss_dssp HHHHHHHHC---CCHHHHGGGHCCCCCH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444 4566777777554443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=88.85 E-value=15 Score=34.24 Aligned_cols=35 Identities=6% Similarity=-0.208 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcC
Q 019502 282 LKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (340)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 316 (340)
+..++.+..++..+....+..-+.+-++-.++.+|
T Consensus 408 ~~~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g 442 (509)
T 2wsw_A 408 LSTATMWGFFILCFIATVTLINACSYTLAMSTCRS 442 (509)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCC
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCC
Confidence 34455555555555666667777777777777554
No 10
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=25.27 E-value=4e+02 Score=24.43 Aligned_cols=57 Identities=9% Similarity=-0.069 Sum_probs=25.3
Q ss_pred ccchhHHHHhhhhh-cc-cccCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 019502 21 LTVLPLIALIFYEV-SG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP 81 (340)
Q Consensus 21 l~~~~~~~l~~~~~-~g-gi~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~el~~~~p 81 (340)
...|-...+++++. +| +... .-...+ +- ...+++-++.+++ ....+..=.+.+..+|
T Consensus 33 ~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~-a~-lai~lG~li~~~~-~~l~~~~G~~~Gl~~~ 91 (501)
T 2jln_A 33 AAIWFAMAIQVAIFIAAGQMTS-SFQVWQ-VI-VAIAAGCTIAVIL-LFFTQSAAIRWGINFT 91 (501)
T ss_dssp HHHHHHHHCSTHHHHHHHHHTT-TSCHHH-HH-HHHHHHHHHHHHH-HHHHTHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CcCHHH-HH-HHHHHHHHHHHHH-HHHHhHHHhhcCCChh
Confidence 45555555666655 55 2222 212222 11 2234555555553 4445555555444444
Done!