Query 019503
Match_columns 340
No_of_seqs 189 out of 1161
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 1.5E-84 3.2E-89 606.8 33.9 308 18-339 1-309 (311)
2 PLN02717 uridine nucleosidase 100.0 3.2E-82 6.9E-87 602.3 36.2 314 20-339 1-315 (316)
3 PRK09955 rihB ribonucleoside h 100.0 5.3E-82 1.1E-86 599.1 36.5 306 18-339 2-308 (313)
4 cd02653 nuc_hydro_3 NH_3: A su 100.0 2.8E-78 6E-83 576.0 35.2 304 21-339 1-308 (320)
5 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 4.1E-78 8.9E-83 571.9 34.0 301 21-337 1-302 (302)
6 PRK10443 rihA ribonucleoside h 100.0 8.8E-78 1.9E-82 570.7 36.0 306 19-339 2-309 (311)
7 PRK10768 ribonucleoside hydrol 100.0 1.7E-77 3.8E-82 567.5 34.6 300 19-339 2-302 (304)
8 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 4E-77 8.7E-82 564.4 34.7 299 20-333 1-305 (306)
9 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 4.6E-77 9.9E-82 565.2 34.2 303 21-334 1-304 (304)
10 PTZ00313 inosine-adenosine-gua 100.0 1.6E-74 3.4E-79 551.5 35.0 302 19-338 2-324 (326)
11 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 4.8E-74 1E-78 546.7 32.2 298 21-333 1-318 (318)
12 cd00455 nuc_hydro nuc_hydro: N 100.0 9.9E-72 2.1E-76 526.4 33.9 295 22-333 1-295 (295)
13 PF01156 IU_nuc_hydro: Inosine 100.0 5.3E-73 1.1E-77 539.5 23.5 304 19-339 1-311 (312)
14 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 7.8E-71 1.7E-75 522.2 31.0 285 20-328 1-302 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 1.1E-69 2.4E-74 516.4 31.3 280 19-302 1-348 (367)
16 KOG2938 Predicted inosine-urid 100.0 1.1E-55 2.3E-60 417.7 25.5 317 9-338 11-333 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 100.0 3.4E-47 7.3E-52 355.9 21.4 240 22-292 1-266 (293)
18 PF07632 DUF1593: Protein of u 98.3 8.2E-07 1.8E-11 81.5 5.0 144 21-170 1-158 (260)
19 PF14097 SpoVAE: Stage V sporu 75.3 3.2 6.9E-05 35.9 3.2 27 33-59 71-97 (180)
20 PF10609 ParA: ParA/MinD ATPas 74.5 7.3 0.00016 29.6 4.7 54 21-81 3-57 (81)
21 PF00455 DeoRC: DeoR C termina 72.5 16 0.00034 31.3 7.0 74 121-210 29-102 (161)
22 KOG2938 Predicted inosine-urid 70.4 1.7 3.7E-05 42.2 0.6 86 119-205 191-291 (350)
23 PF01168 Ala_racemase_N: Alani 64.2 25 0.00054 31.1 6.9 41 18-58 109-157 (218)
24 PRK09802 DNA-binding transcrip 61.4 35 0.00075 31.8 7.5 73 121-209 116-188 (269)
25 COG0482 TrmU Predicted tRNA(5- 57.6 46 0.00099 32.5 7.7 61 17-81 1-67 (356)
26 PRK13509 transcriptional repre 55.9 51 0.0011 30.3 7.5 72 121-210 103-174 (251)
27 COG2185 Sbm Methylmalonyl-CoA 51.5 35 0.00076 28.8 5.1 54 31-89 53-106 (143)
28 PF03054 tRNA_Me_trans: tRNA m 50.5 44 0.00096 32.6 6.4 59 20-82 1-67 (356)
29 cd02072 Glm_B12_BD B12 binding 50.2 31 0.00067 28.6 4.5 48 39-88 45-92 (128)
30 COG2248 Predicted hydrolase (m 48.6 35 0.00075 31.8 4.9 78 64-146 118-212 (304)
31 COG1927 Mtd Coenzyme F420-depe 46.4 73 0.0016 28.8 6.5 73 122-207 18-94 (277)
32 PRK10411 DNA-binding transcrip 46.3 86 0.0019 28.6 7.4 72 121-209 103-174 (240)
33 COG1349 GlpR Transcriptional r 44.5 1.1E+02 0.0024 28.2 7.8 75 120-210 100-174 (253)
34 TIGR00044 pyridoxal phosphate 43.3 98 0.0021 27.9 7.2 41 18-58 119-169 (229)
35 cd02065 B12-binding_like B12 b 41.7 95 0.0021 24.4 6.2 64 21-90 30-93 (125)
36 PRK10681 DNA-binding transcrip 38.9 1.5E+02 0.0032 27.2 7.7 73 121-209 102-174 (252)
37 PRK10906 DNA-binding transcrip 37.8 1.7E+02 0.0038 26.8 8.0 73 121-209 101-173 (252)
38 COG1206 Gid NAD(FAD)-utilizing 34.9 9.9 0.00021 36.8 -0.7 35 125-167 118-153 (439)
39 PRK02261 methylaspartate mutas 34.0 65 0.0014 26.8 4.1 45 42-88 52-96 (137)
40 cd06820 PLPDE_III_LS_D-TA_like 33.6 1.6E+02 0.0035 28.2 7.5 41 18-58 120-169 (353)
41 COG0489 Mrp ATPases involved i 33.5 1.1E+02 0.0023 28.5 5.9 56 19-81 167-222 (265)
42 PRK10434 srlR DNA-bindng trans 33.1 1.9E+02 0.0042 26.5 7.6 72 123-209 103-174 (256)
43 TIGR01849 PHB_depoly_PhaZ poly 32.3 1.8E+02 0.0039 28.9 7.6 58 120-177 153-213 (406)
44 PRK02628 nadE NAD synthetase; 32.3 1.1E+02 0.0024 32.5 6.5 57 18-75 360-422 (679)
45 cd06824 PLPDE_III_Yggs_like Py 30.7 2.2E+02 0.0047 25.5 7.3 37 22-58 123-167 (224)
46 KOG3022 Predicted ATPase, nucl 28.9 63 0.0014 30.5 3.5 64 18-88 156-220 (300)
47 PF09078 CheY-binding: CheY bi 28.6 47 0.001 24.2 2.0 21 18-38 34-54 (65)
48 TIGR00640 acid_CoA_mut_C methy 27.3 1.2E+02 0.0027 24.9 4.7 46 40-87 49-94 (132)
49 cd00635 PLPDE_III_YBL036c_like 27.1 2.5E+02 0.0054 24.9 7.1 41 18-58 115-165 (222)
50 TIGR01501 MthylAspMutase methy 26.9 1.2E+02 0.0025 25.4 4.4 48 39-88 47-94 (134)
51 cd00553 NAD_synthase NAD+ synt 25.5 2.3E+02 0.005 25.7 6.6 57 18-75 22-79 (248)
52 CHL00181 cbbX CbbX; Provisiona 24.9 1.3E+02 0.0027 28.4 4.8 48 119-166 144-191 (287)
53 cd06822 PLPDE_III_YBL036c_euk 23.8 3.2E+02 0.007 24.8 7.1 41 18-58 116-167 (227)
54 cd06819 PLPDE_III_LS_D-TA Type 23.3 4.3E+02 0.0093 25.2 8.4 39 18-56 124-171 (358)
55 cd07376 PLPDE_III_DSD_D-TA_lik 22.5 3.9E+02 0.0085 25.4 7.9 40 18-57 110-159 (345)
56 PRK10696 tRNA 2-thiocytidine b 22.2 3.3E+02 0.0072 24.9 7.1 58 18-81 28-91 (258)
57 cd06814 PLPDE_III_DSD_D-TA_lik 22.1 3.6E+02 0.0078 26.4 7.6 39 18-56 132-179 (379)
58 PRK14665 mnmA tRNA-specific 2- 22.1 4E+02 0.0087 26.0 7.8 55 19-74 5-60 (360)
59 TIGR00420 trmU tRNA (5-methyla 22.0 3.2E+02 0.007 26.5 7.2 57 21-81 2-67 (352)
60 PF02310 B12-binding: B12 bind 21.4 3E+02 0.0064 21.4 5.8 59 22-86 32-90 (121)
61 KOG0237 Glycinamide ribonucleo 20.3 3.1E+02 0.0068 28.8 6.7 27 179-205 121-148 (788)
62 TIGR02432 lysidine_TilS_N tRNA 20.1 3.5E+02 0.0077 23.0 6.5 58 21-81 1-62 (189)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-84 Score=606.85 Aligned_cols=308 Identities=41% Similarity=0.655 Sum_probs=292.7
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 97 (340)
+++|||||||+|.||++||+||+++|++||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++. ..++
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~ 79 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP 79 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999875 4668
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 98 ~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
++||++||++..+|.|...+...+|+++|+++++++|++|||+++|||||||+|++++|++.++||+||||||+++.+||
T Consensus 80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN 159 (311)
T COG1957 80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN 159 (311)
T ss_pred hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence 99999999999888887777779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (340)
Q Consensus 178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (340)
++|.||||+|+|||||++||+||+|++|+|||+|+|+..+++.++.+++.+++.++++.+++++|.+++.+.++..|
T Consensus 160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g--- 236 (311)
T COG1957 160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDG--- 236 (311)
T ss_pred cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777888
Q ss_pred ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
.++||++|++++++|++|++++.+|+||+.| .++|+|++|+.. .+...+|++++.++|.++|++++.++
T Consensus 237 ---~~~hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~-------~~~~~~n~~v~~~vD~~~f~~~i~~~ 306 (311)
T COG1957 237 ---APLHDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRG-------VLGKPPNAQVAVDVDVEGFLDLILEA 306 (311)
T ss_pred ---CCcccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEecc-------cCCCCCCeEEeeccCHHHHHHHHHHH
Confidence 8999999999999999999999999999997 899999999852 23567899999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 307 l~~ 309 (311)
T COG1957 307 LAR 309 (311)
T ss_pred Hhc
Confidence 864
No 2
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=3.2e-82 Score=602.35 Aligned_cols=314 Identities=72% Similarity=1.141 Sum_probs=289.4
Q ss_pred CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCC-CCCcccc
Q 019503 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGG-KPRVAEF 98 (340)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~-~~~~~~~ 98 (340)
+|||||||+|+||++||+|||++|++||+|||||+||++.+++++|++++|+.+|+.+||||+|+.+||.+. ..+.+.+
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~~~~~~~ 80 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPVAEGSHEPLKGGTKPRIADF 80 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHcCCCCCCEEeCCCCCCCCCCCCcCCcc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999985 2356678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCC
Q 019503 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~ 178 (340)
+||.||||+..+|.|...+...+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+||+
T Consensus 81 ~hG~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~ 160 (316)
T PLN02717 81 VHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNV 160 (316)
T ss_pred CCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCcCCCCCC
Confidence 99999999998887776667889999999999999999999999999999999999999999999999999999888999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCccc
Q 019503 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (340)
+|.+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|++++.+.++..|
T Consensus 161 tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 236 (316)
T PLN02717 161 NPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDG---- 236 (316)
T ss_pred CchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhcCCCc----
Confidence 9999999999999999999999999999999999999999999999887889999999999999999877677777
Q ss_pred cccccchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHHHh
Q 019503 259 KSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLM 338 (340)
Q Consensus 259 ~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~l~ 338 (340)
+++||++|++++++|++|++++.+|+||++|.+||+|++|++...+.....+.+.+|++|+.++|.++|+++|+++|.
T Consensus 237 --~~~~D~la~a~~~~P~~~~~~~~~v~Ve~~g~trG~tv~d~~~~~~~~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~ 314 (316)
T PLN02717 237 --IYLHDPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVDAPAVVELVKERLM 314 (316)
T ss_pred --ccCCcHHHhHHhcCccceEEEEecEEEEeCCCCCceEeeeccccccccccccCCCCCCEEeeecCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999974322211122345679999999999999999999986
Q ss_pred c
Q 019503 339 K 339 (340)
Q Consensus 339 ~ 339 (340)
+
T Consensus 315 ~ 315 (316)
T PLN02717 315 A 315 (316)
T ss_pred c
Confidence 4
No 3
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=5.3e-82 Score=599.13 Aligned_cols=306 Identities=29% Similarity=0.522 Sum_probs=284.5
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 97 (340)
+++|||||||+|+||++||+|||++|++||+|||||+||++++++++|++++|+.+|+ +||||+|+.+||.++. ..+.
T Consensus 2 ~~~kvIiDtD~G~DDa~Al~~al~~p~~ev~gIttv~GN~~~~~~~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~-~~~~ 79 (313)
T PRK09955 2 EKRKIILDCDPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI-NVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_pred CCceEEEECCCChHHHHHHHHHhcCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCC-CCCEEeCCCCCCCCCC-CCcc
Confidence 5689999999999999999999999999999999999999999999999999999997 8999999999998864 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 98 ~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
.+||.+|||+..+|++...+.+.+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++. .||
T Consensus 80 ~~HG~~Glg~~~~~~~~~~~~~~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~GN 158 (313)
T PRK09955 80 NIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYG-TGN 158 (313)
T ss_pred ccCCCCCCCCCCCCCcccccCCCcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCC-CCC
Confidence 8999999999988877766677899999999999999999999999999999999999999999999999999984 799
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (340)
Q Consensus 178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (340)
++|.+|||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++++.+++++|.+++.+.++..|
T Consensus 159 ~tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--- 235 (313)
T PRK09955 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAG--- 235 (313)
T ss_pred CCCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence 99999999999999999999999999999999999999999999999988899999999999999998877677777
Q ss_pred ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|++++.+|+||++| .+||+|++|..+. +...+|++|+.++|.++|+++|+++
T Consensus 236 ---~~lhD~la~a~~~~P~l~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~ 305 (313)
T PRK09955 236 ---GPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEEC 305 (313)
T ss_pred ---CccChHHHHHHHcChhhEEEEEeeEEEEeCCCCCCceEEeccccc-------CCCCCCCEEeeecCHHHHHHHHHHH
Confidence 9999999999999999999999999999985 8999999996431 2345799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 306 l~~ 308 (313)
T PRK09955 306 VRG 308 (313)
T ss_pred HHH
Confidence 853
No 4
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.8e-78 Score=575.95 Aligned_cols=304 Identities=32% Similarity=0.528 Sum_probs=280.9
Q ss_pred eEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccc
Q 019503 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 100 (340)
|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.+.. ..+..+|
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~~~~~h 79 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELLGRTDIPVYLGADKPLAGPL-TTAQDTH 79 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHHcCCCCCcEEeCCCccCCCCC-CCccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999998764 4567899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCc
Q 019503 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (340)
Q Consensus 101 G~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~ 180 (340)
|.+|||+..+|.+...+...+|+++|+++++++| +||||++|||||||+|++++|++.++||+||+|||++..+||++|
T Consensus 80 G~dGlg~~~~p~~~~~~~~~~A~~~i~~~~~~~~-eitiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~~GN~tp 158 (320)
T cd02653 80 GPDGLGYAELPASTRTLSDESAAQAWVDLARAHP-DLIGLATGPLTNLALALREEPELPRLLRRLVIMGGAFNSRGNTSP 158 (320)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCC-CeEEEECCchHHHHHHHHHChHHHHhcCEEEEECCCcCCCCCCCc
Confidence 9999999888876666677899999999999999 999999999999999999999999999999999999988899999
Q ss_pred cccccccCCHHHHHHHHhc----CCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCc
Q 019503 181 AAEANIYGDPEAADVVFTS----GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNF 256 (340)
Q Consensus 181 ~aE~N~~~DPeAA~~Vl~s----~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 256 (340)
.+|||||+|||||++||+| ++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+..+..|
T Consensus 159 ~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (320)
T cd02653 159 VAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARAKDSVGAFIEDALRFYFEFHWAYGHGYG-- 236 (320)
T ss_pred HhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCC--
Confidence 9999999999999999998 6999999999999999999999999988889999999999999998765444446
Q ss_pred cccccccchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 257 SFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 257 ~~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|++++.+|+||++|..+|+|++|+.+. +...+|++|+.++|.++|+++|+++
T Consensus 237 ----~~lhD~lAva~~~~P~l~~~~~~~v~Ve~~g~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~ 305 (320)
T cd02653 237 ----AVIHDPLAAAVALNPNLARGRPAYVDVECTGVLTGQTVVDWAGF-------WGKGANAEILTKVDSQDFMALFIER 305 (320)
T ss_pred ----CCCChHHHHHHhcChhheEEEEeeEEEEeCCCCCceEEEecccc-------CCCCCCcEEeeccCHHHHHHHHHHH
Confidence 89999999999999999999999999999987679999996432 2345799999999999999999998
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 306 l~~ 308 (320)
T cd02653 306 VLA 308 (320)
T ss_pred HHH
Confidence 853
No 5
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=4.1e-78 Score=571.93 Aligned_cols=301 Identities=37% Similarity=0.583 Sum_probs=278.0
Q ss_pred eEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccc
Q 019503 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 100 (340)
|||||||+|+||++||+||+++|++||+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.++. ..++.+|
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~ll~~~g~~diPV~~Ga~~pl~~~~-~~~~~~h 79 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHPELDLLGITTVAGNVPLEKTTRNALKLLTLLGRTDVPVAAGAARPLVRPL-ITASDIH 79 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCCCceEEEEEeccCeecHHHHHHHHHHHHHHhCCCCCcEEcCCCcCcCCCC-CCCcCCC
Confidence 699999999999999999999999999999999999999999999999999999999999999999998864 3566799
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCc
Q 019503 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (340)
Q Consensus 101 G~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~ 180 (340)
|.+|||+..+|.+...+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++ ..||++|
T Consensus 80 G~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~-~~GN~tp 158 (302)
T cd02651 80 GESGLDGADLPPPPRRPEDIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGAL-GRGNITP 158 (302)
T ss_pred CCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEecCCc-CCCCCCh
Confidence 999999998887666666789999999999999999999999999999999999999999999999999998 6899999
Q ss_pred cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCccccc
Q 019503 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (340)
Q Consensus 181 ~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (340)
.+|||||+|||||++||+|++|++++|||+|+++.++++++++|.+.+++.++|+.+++++|.+++.... ..|
T Consensus 159 ~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 231 (302)
T cd02651 159 AAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRALGNPVGKMLAELLDFFAETYGSAF-TEG------ 231 (302)
T ss_pred HHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhc-cCC------
Confidence 9999999999999999999999999999999999999999999998888999999999999987665433 456
Q ss_pred cccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHHH
Q 019503 261 IFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 337 (340)
Q Consensus 261 ~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~l 337 (340)
+++||++|++++++|++|++++.+|+|+++| .+||+|++|+... .+..+|++|+.++|.++|+++|.++|
T Consensus 232 ~~l~D~la~~~~~~p~~~~~~~~~v~Ve~~g~~~rG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 232 PPLHDPCAVAYLLDPELFTTKRANVDVETEGELTRGRTVVDLRGV-------TGRPANAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred CCCCcHHHhHHhcCccceEEEEeeEEEEcCCCCCCceEEEecccc-------CCCCCCcEEeeecCHHHHHHHHHHhC
Confidence 8999999999999999999999999999997 8999999986431 12457899999999999999999864
No 6
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=8.8e-78 Score=570.71 Aligned_cols=306 Identities=33% Similarity=0.527 Sum_probs=282.6
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 98 (340)
++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+.+|+.+||||+|+.+|+.+.. ..++.
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 80 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASPELDVKAVTTSAGNQTPEKTLRNALRMLTLLNRTDIPVAGGAVKPLMREL-IIADN 80 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCCCC-cCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998753 35667
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCC
Q 019503 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~ 178 (340)
.||++|+|+..+|.+...+.+.+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++. .||+
T Consensus 81 ~hG~~Gl~~~~~p~~~~~~~~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~-~Gn~ 159 (311)
T PRK10443 81 VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMG-LGNW 159 (311)
T ss_pred cCCCCCCCCCCCCCCccCCCCccHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCC-CCCC
Confidence 999999999888877666667899999999999999999999999999999999999999999999999999985 5999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhh-ccCCCCCcc
Q 019503 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVK-SDGVHGNFS 257 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~ 257 (340)
+|.+|||||+|||||++||+|++|++|+|||+|+++.++++++++|.+.+++.++|+.+++++|..++.+ .++..|
T Consensus 160 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g--- 236 (311)
T PRK10443 160 TPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAIGNPVATIVAELLDFFMEYHKDEKWGFVG--- 236 (311)
T ss_pred CcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhcCChHHHHHHHHHHHHHHHhHhhhCCCCC---
Confidence 9999999999999999999999999999999999999999999999988899999999999999888764 456677
Q ss_pred ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|++++.+|+||++| .+||+|++|.... +..++|++|++++|.++|+++|+++
T Consensus 237 ---~~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~~~~~~-------~~~~~n~~v~~~vd~~~f~~~l~~~ 306 (311)
T PRK10443 237 ---APLHDPCTIAWLLKPELFTTVERWVGVETQGEYTQGMTVVDYYQL-------TGNKPNATVLVDVDRQGFVDLLAER 306 (311)
T ss_pred ---CCCCCHHHhHHhcCcceEEEEEeCEEEEcCCCCCCceEEEecccc-------CCCCCCCEEEeecCHHHHHHHHHHH
Confidence 8999999999999999999999999999997 6999999986421 1235799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 307 l~~ 309 (311)
T PRK10443 307 LKF 309 (311)
T ss_pred HHh
Confidence 864
No 7
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=1.7e-77 Score=567.48 Aligned_cols=300 Identities=37% Similarity=0.531 Sum_probs=276.1
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 98 (340)
++|||||||+|+||++||+|||++|++||+|||+|+||++.+++++|++++|+.+| .+||||+|+.+||.++. ..+..
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p~~~v~git~v~GN~~~~~~~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~-~~~~~ 79 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAPELDLKLITTVAGNVSVEKTTRNALKLLHFFN-SDVPVAQGAAKPLVRPL-RDAAS 79 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHHHHHhC-CCCeEEeCCccccCCCC-CCccc
Confidence 47999999999999999999999999999999999999999999999999999999 89999999999998754 34567
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCC
Q 019503 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~ 178 (340)
+||++|||+..+|.+...+.+.+|+++|+++++++|++|+||++|||||||+|++++|++.++||+||+|||++. +||+
T Consensus 80 ~hG~~Gl~~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~-~GN~ 158 (304)
T PRK10768 80 VHGESGMEGYDFPEHTRKPLSIPAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSAG-RGNV 158 (304)
T ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCcC-cCCC
Confidence 999999999988877666677899999999999999999999999999999999999999999999999999984 7999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCccc
Q 019503 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (340)
+|.+|||||+|||||++||+|++|++|+|||+|+++.+++++++++++. ++.++|+.+++++|.+++. ..|
T Consensus 159 t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~g---- 229 (304)
T PRK10768 159 TPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL-NRTGKMLHALFSHYRSGSM----QTG---- 229 (304)
T ss_pred CccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc-ChHHHHHHHHHHHHHhhcc----cCC----
Confidence 9999999999999999999999999999999999999999999999864 7889999999999887553 245
Q ss_pred cccccchHHHHHHHhcCCceeeEeeeEEEEecCC-cceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHHH
Q 019503 259 KSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGI-CMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL 337 (340)
Q Consensus 259 ~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~-~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~l 337 (340)
+++||++|++++++|++|++++.+|+||++|. +||+|++|.... ++.++|++|+.++|.++|+++|+++|
T Consensus 230 --~~~hD~la~a~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~d~~~~-------~~~~~~~~v~~~vd~~~f~~~~~~~l 300 (304)
T PRK10768 230 --LRMHDVCAIAYLLRPELFTLKPCFVDVETQGEFTAGATVVDIDGR-------LGKPANAQVALDIDVDGFQKWFAEVL 300 (304)
T ss_pred --CCcCcHHHhhheeCcccEEEEEecEEEEeCCCCCCceEEEecccc-------CCCCCCcEEEeecCHHHHHHHHHHHH
Confidence 89999999999999999999999999999984 999999996431 23457999999999999999999998
Q ss_pred hc
Q 019503 338 MK 339 (340)
Q Consensus 338 ~~ 339 (340)
.+
T Consensus 301 ~~ 302 (304)
T PRK10768 301 AL 302 (304)
T ss_pred Hh
Confidence 64
No 8
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=4e-77 Score=564.42 Aligned_cols=299 Identities=32% Similarity=0.480 Sum_probs=275.0
Q ss_pred CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccccc
Q 019503 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (340)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~ 99 (340)
+|||||||+|+||++||++||++|++||+||||++||++.+++++|++++|+.+|+.+||||+|+.+||.++. .....+
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~~ 79 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASPNVEVLAITCVHGNTNVEQVVKNALRVLEACGRRDIPVYRGASKPLLGPG-PTAAYF 79 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEecCCCccCCCCC-CCcccc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999998864 355679
Q ss_pred cCCCCCCCCCCCCCC--CCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 100 HGSDGMGNISLTPPK--AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 100 hG~dglg~~~~p~~~--~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
||.+|||+..+|++. ..+.+.+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++...||
T Consensus 80 hG~~Glg~~~~p~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~~~GN 159 (306)
T cd02649 80 HGKDGFGDVGFPEPKDELELQKEHAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREGVGN 159 (306)
T ss_pred CCCCCCCCCCCCCCcccCCcCCCCHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCccCCCC
Confidence 999999999888765 455678899999999999999999999999999999999999999999999999999988899
Q ss_pred CCccccccccCCHHHHHHHHhc-CCcEEEEeccccc-ccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCC
Q 019503 178 VNPAAEANIYGDPEAADVVFTS-GANIAVVGINITT-QVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGN 255 (340)
Q Consensus 178 ~~~~aE~N~~~DPeAA~~Vl~s-~~~i~~v~ldvt~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 255 (340)
++|.+|||||+|||||++||+| ++|++|+|||+|+ ++.+++++++++.+. ++.++|+.+++++|.+++.+..+..|
T Consensus 160 ~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g- 237 (306)
T cd02649 160 TTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR-LEKALFAESLNRREYAFASEGLGGDG- 237 (306)
T ss_pred CCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhhcCCCC-
Confidence 9999999999999999999999 9999999999999 999999999999874 58899999999999888776666677
Q ss_pred ccccccccchHHHHHHHhcCCceeeEee-eEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHH
Q 019503 256 FSFKSIFLHDPVSFVALVRPDLFTFKKG-VVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 333 (340)
Q Consensus 256 ~~~~~~~l~D~la~~~~~~P~l~~~~~~-~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l 333 (340)
+++||++|++++++|++|++++. +|+|+++| .+||+|++|+.+. +...+|++|+.++|.++|+++|
T Consensus 238 -----~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~ 305 (306)
T cd02649 238 -----WVPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVVDWLGT-------LKKKPNARVITKIDREKFKELL 305 (306)
T ss_pred -----CCCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEEecccc-------CCCCCCCEEehhcCHHHHHHHh
Confidence 89999999999999999998764 59999997 6999999996432 2345799999999999999987
No 9
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=4.6e-77 Score=565.25 Aligned_cols=303 Identities=50% Similarity=0.848 Sum_probs=277.1
Q ss_pred eEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccccc
Q 019503 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAH 100 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~h 100 (340)
|||||||+|+||++||+|||++|++||+||||++||++.+++++|++++|+.+|+.+||||+|+++|+.......+.++|
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~~g~~diPV~~G~~~pl~~~~~~~~~~~h 80 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLELFGRPDVPVAEGAAKPLTRPPFRIATFVH 80 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEcCCCCCCCCCCcCCcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999876533678899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCc
Q 019503 101 GSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNP 180 (340)
Q Consensus 101 G~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~ 180 (340)
|.||||+..+|.+...+.+.+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++...||++|
T Consensus 81 g~dGlg~~~~p~~~~~~~~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~~GN~~p 160 (304)
T cd02650 81 GDNGLGDVELPAPPRQPEDESAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTVPGNVTP 160 (304)
T ss_pred CCCCCCCCCCCCCCCCcCccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccCCCCCCc
Confidence 99999999888776666778999999999999999999999999999999999999999999999999999988899999
Q ss_pred cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCccccc
Q 019503 181 AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKS 260 (340)
Q Consensus 181 ~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (340)
.+|||||+||+||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..|
T Consensus 161 ~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------ 234 (304)
T cd02650 161 AAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDSGGKAGQFLADMLDYYIDFYQESPGLRG------ 234 (304)
T ss_pred hHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCc------
Confidence 99999999999999999999999999999999999999999999988889999999999999988876656677
Q ss_pred cccchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCH-HHHHHHHH
Q 019503 261 IFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNV-DKVLNYIK 334 (340)
Q Consensus 261 ~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~-~~f~~~l~ 334 (340)
+++||++|++++++|++|++++.+++|+++|.+||+|++|..+..| |...+|.++...+|. ++|+++|+
T Consensus 235 ~~l~D~la~~~~~~P~~~~~~~~~v~Ve~~g~~~G~tv~d~~~~~~-----~~~~~~~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 235 CALHDPLAVAAAVDPSLFTTREGVVRVETEGPTRGRTIGDRDGRRF-----WDSSPNATVAVDVDVDERFLKRLM 304 (304)
T ss_pred ccCCcHHHHHhhcCccceEEEEeeEEEEeCCCCCceEEEecccccc-----ccCCCCceEEEEEChhHHHHHHhC
Confidence 8999999999999999999999999999999999999999754331 233456555555555 99999873
No 10
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=1.6e-74 Score=551.48 Aligned_cols=302 Identities=23% Similarity=0.300 Sum_probs=262.2
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCC-CeEEEEEeecCCCCHHHHHHHHHHHHHHhCCC-CCCccccCCCCCCCCCCCcc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP-GVPVAEGSPEPLKGGKPRVA 96 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~-dIPV~~Ga~~pl~~~~~~~~ 96 (340)
++|||||||+|+||++||+|||++|+ +||+|||||+||++++++++|++++|+++|+. ||||+.|+..|+.+.....+
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~~~~~v~gIT~v~GNv~~~~~~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~~~~ 81 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNPEKVKVIGCICTDADCFVDDAFNVTGKLMCMMHAREATPLFPIGKSSFKGVNPFPS 81 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCCcCcEEEEEEEecCCccHHHHHHHHHHHHHHhCCCCCCCeeeecCCcccCCCCCcc
Confidence 46999999999999999999999997 99999999999999999999999999999997 89999999999876322223
Q ss_pred ccc---cCCCCCCCCCCCCCCC-----CCCC--ccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCC-chhhccceE
Q 019503 97 EFA---HGSDGMGNISLTPPKA-----KKCD--KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDS-SFASKVKNI 165 (340)
Q Consensus 97 ~~~---hG~dglg~~~~p~~~~-----~~~~--~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P-~~~~~i~~i 165 (340)
.+. ||.+|||+..+|.+.. .+.. .+|+++|++++++||++||||++|||||||+|++++| ++.++||+|
T Consensus 82 ~~~~g~~G~~glg~~~~p~~~~~~~~~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~~~~~ik~i 161 (326)
T PTZ00313 82 EWRWSAKNMDDLPCLNIPEHVAIWEKLKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEEC 161 (326)
T ss_pred hheecccCCCCCCCCCCCCccccccccCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHHHHHhcCEE
Confidence 333 7788898887776542 2332 3599999999999999999999999999999999996 999999999
Q ss_pred EEecCCCCCCCCC-----CccccccccCCHHHHHHHHhcC-CcEEEEecccccccccCHHHHHHHHhcCC-hhhHHHHHH
Q 019503 166 VVLGGAFFALGNV-----NPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQSKG-RYVQLLGDM 238 (340)
Q Consensus 166 viMGG~~~~~Gn~-----~~~aE~N~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 238 (340)
|||||++..+||+ +|.+|||||+|||||++||+|+ +|++|+|||+|+++.++++++++|.+.++ +.++|+.++
T Consensus 162 viMGG~~~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~ 241 (326)
T PTZ00313 162 VIMGGAVDVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGST 241 (326)
T ss_pred EEeCCcccCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHHHHHHhcCcchHHHHHHHH
Confidence 9999999888998 7999999999999999999996 99999999999999999999999987655 578888887
Q ss_pred HHHHHHHhhhccCCCCCccccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCC
Q 019503 239 CKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSP 317 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~ 317 (340)
+.++.. +....+..| +++||++|++++++|++|++++.+|+||++| .++|+|+++.. +.++
T Consensus 242 ~~~~~~-~~~~~~~~g------~~~hD~lA~a~~~~Pel~~~~~~~v~Ve~~~~~t~G~tv~~~~-----------~~~~ 303 (326)
T PTZ00313 242 WAMCTH-HELLRPGDG------YYAWDVLTAAYVIERNLAELEPVPLEVVVEKAKNEGRTRRAAE-----------GAAC 303 (326)
T ss_pred Hhhhhh-hhhhcCCCC------CcCcHHHHHHHhcChheEEEEEEEEEEEeCCCCCCceEEeCCC-----------CCCc
Confidence 654422 111112356 8999999999999999999999999999985 89999998642 2357
Q ss_pred cEEEEecCHHHHHHHHHHHHh
Q 019503 318 VSVAWTVNVDKVLNYIKRLLM 338 (340)
Q Consensus 318 ~~v~~~vD~~~f~~~l~~~l~ 338 (340)
++|+.++|.++|+++|+++|.
T Consensus 304 ~~V~~~vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 304 TYVAKNTNAELFYDMVLDSAR 324 (326)
T ss_pred eEEEecCCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 11
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=4.8e-74 Score=546.66 Aligned_cols=298 Identities=29% Similarity=0.376 Sum_probs=263.1
Q ss_pred eEEEecCCC----chHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCc-
Q 019503 21 KLIIDTDPG----IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRV- 95 (340)
Q Consensus 21 ~viiDtD~G----~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~- 95 (340)
|||||||+| +||++||+||+++|++||+|||||+||++.+++++|++++|+.+||.+||||+|+.+||.+.....
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p~~el~gIt~v~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~ 80 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSPEVELLGLSAVSGNCWLSAVTYNVLRMLELAGADAIPVYAGANTPLGRTNRAFH 80 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCCCceEEEEEEecCCCCHHHHHHHHHHHHHHhCCCCCCEEECCCccccCCccccc
Confidence 699999999 999999999999999999999999999999999999999999999999999999999998753211
Q ss_pred -cccccCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEE
Q 019503 96 -AEFAHGSDGMGNISLTPPK--------AKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (340)
Q Consensus 96 -~~~~hG~dglg~~~~p~~~--------~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iv 166 (340)
.+..||.+|+++..+|.+. ..+...+|+++|+++++++|++||||++|||||||+|++++|++.++||+||
T Consensus 81 ~~~~~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~i~~iv 160 (318)
T cd02654 81 AWESLYGAYLWQGAWSPEYSDMYTNASIIRNASIPAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELV 160 (318)
T ss_pred cccccCCCcccCCCCCCCccccccccccCCCCCccHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChhHHHhCCEEE
Confidence 1568999999887777654 3445688999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCC-CCC-c-cccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHH
Q 019503 167 VLGGAFFALG-NVN-P-AAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYR 243 (340)
Q Consensus 167 iMGG~~~~~G-n~~-~-~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (340)
+|||++...| |++ + .||||||+|||||++||+|++|++|+|||+|+++.+++++++++ ++.++|+.+++++|.
T Consensus 161 iMGG~~~~~g~~~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 236 (318)
T cd02654 161 IMGGYLDDIGEFVNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTPEQIKAD----DPLRDFIRETLDLPI 236 (318)
T ss_pred EeCCCccCCCCcCCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCHHHHhcc----CHHHHHHHHHHHHHH
Confidence 9999986555 666 3 89999999999999999999999999999999999999988744 567899999999999
Q ss_pred HHhhhccCC-CCCccccccccchHHHHHHHhcCCceeeEee-eEEEEecCCcceeEEEecCccccccCCCCC-CCCCcEE
Q 019503 244 DWHVKSDGV-HGNFSFKSIFLHDPVSFVALVRPDLFTFKKG-VVRVETQGICMGHTLMDQGLKRWNVSNPWT-GYSPVSV 320 (340)
Q Consensus 244 ~~~~~~~~~-~g~~~~~~~~l~D~la~~~~~~P~l~~~~~~-~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~-~~~~~~v 320 (340)
+++.+.++. .| +++||++|++++++|++|++++. +|+||++|.+||+|++|+....+ .. ..+|++|
T Consensus 237 ~~~~~~~~~~~g------~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~~~~~G~tv~d~~~~~~-----~~~~~~n~~v 305 (318)
T cd02654 237 DYAKEFVGTGDG------LPMWDELASAVALDPELATSSETFYIDVQTDSDGGGQLIWPEDLLLA-----KGLRPYHVKV 305 (318)
T ss_pred HHHHHhcCCCCC------CCCchHHHHHHHcCHhHccceEeEEEEEEeCCCcCCeEEeecccCCC-----CCCCCCCCEE
Confidence 887655443 56 89999999999999999998887 99999987799999999643210 11 2469999
Q ss_pred EEecCHHHHHHHH
Q 019503 321 AWTVNVDKVLNYI 333 (340)
Q Consensus 321 ~~~vD~~~f~~~l 333 (340)
+.++|.++|+++|
T Consensus 306 ~~~vD~~~f~~~~ 318 (318)
T cd02654 306 ITAVDVAAFLNLI 318 (318)
T ss_pred eecccHHHHHhhC
Confidence 9999999999875
No 12
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=9.9e-72 Score=526.42 Aligned_cols=295 Identities=39% Similarity=0.656 Sum_probs=266.7
Q ss_pred EEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccccccC
Q 019503 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHG 101 (340)
Q Consensus 22 viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~hG 101 (340)
||||||+|+||++||+||+++|+++|+|||+++||++.+++++|++++|+.+|+.+||||+|+..|+.+.........||
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~~~~~~~~g 80 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHPEIELVGIVATYGNVTLEQATQNAAYLLELLGRLDIPVYAGATRPLTGEIPAAYPEIHG 80 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCCCCCcccCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999998764333455788
Q ss_pred CCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCcc
Q 019503 102 SDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPA 181 (340)
Q Consensus 102 ~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~ 181 (340)
.+|.+. .+.+.....+++|+++|+++++++|++|+|+++|||||||+|++++|++.++||+||+|||++..+||++|.
T Consensus 81 ~~g~~~--~~~~~~~~~~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviMGG~~~~~Gn~~~~ 158 (295)
T cd00455 81 EGGLGL--PIPPIIEADDPEAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLVPGNVTPV 158 (295)
T ss_pred CCCCCC--CCCCCCcCCCcCHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEcCCccCCCCCCCcc
Confidence 888432 222333445689999999999999999999999999999999999999999999999999999778999999
Q ss_pred ccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 019503 182 AEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSFKSI 261 (340)
Q Consensus 182 aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (340)
+|||||+||+||++||+|++|++|+|||+|+++.+++++++++.+..++.++|+.+++++|..++.+ ++..| +
T Consensus 159 aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~ 231 (295)
T cd00455 159 AEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQGTSIGLLIKPMIDYYYKAYQK-PGIEG------S 231 (295)
T ss_pred chhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-CCCCc------C
Confidence 9999999999999999999999999999999999999999999888889999999999999987766 55566 8
Q ss_pred ccchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHH
Q 019503 262 FLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYI 333 (340)
Q Consensus 262 ~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l 333 (340)
++||++|++++++|++|++++.+++|+++|.++|+|++|..+. ...+|++|+.++|.++|+++|
T Consensus 232 ~~~D~lAv~~~~~P~~~~~~~~~v~V~~~g~~~G~t~~d~~~~--------~~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 232 PIHDPLAVAYLLNPSMFDYSKVPVDVDTDGLTRGQTIADFREN--------PGNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred CCChHHHHHHhcCcccEEEEEEeEEEEeCCCCCceEEEecccC--------CCCCCcEEEEecCHHHHHhhC
Confidence 9999999999999999999999999999999999999996421 134699999999999999864
No 13
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=5.3e-73 Score=539.45 Aligned_cols=304 Identities=45% Similarity=0.734 Sum_probs=259.3
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhC-CCCCCccccCCCCCCCCCCCccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG-CPGVPVAEGSPEPLKGGKPRVAE 97 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g-~~dIPV~~Ga~~pl~~~~~~~~~ 97 (340)
++|||||||+|+||++||++||++|++||+|||+++||++.+++++|++++|+.+| +.+||||.|+.+|+.... ....
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~~-~~~~ 79 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGADRPLVRPP-EYAP 79 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEESS-SSSSH-HHHH
T ss_pred CcEEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecchhhhhccc-cchh
Confidence 58999999999999999999999999999999999999999999999999999996 778999999999998532 4567
Q ss_pred cccCCCCCCCCCCCCCCCC--CCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCC
Q 019503 98 FAHGSDGMGNISLTPPKAK--KCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (340)
Q Consensus 98 ~~hG~dglg~~~~p~~~~~--~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 175 (340)
.+||.+|||+..+|.+... ..+.+|+++|+++++++|++|||||+|||||||+||+++|++.+|||+||+|||++...
T Consensus 80 ~~~g~~gl~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 80 EIHGEDGLGDASLPEPEDEPYPSDEDAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp HHHTTTSSTSS-HHSSSCHCHBHSSBHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred hcccccCCCcccCcccccccccccccHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 8999999999766654443 35788999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHh-cCChhhHHHHHHHHHHHHHhhhccCCCC
Q 019503 176 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQ-SKGRYVQLLGDMCKFYRDWHVKSDGVHG 254 (340)
Q Consensus 176 Gn~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 254 (340)
||.+|.+|||||+||+||++||+|++|++++|+|+|+++.+++++++++.+ .++++++|+.+++++|..++++. ..+
T Consensus 160 Gn~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 237 (312)
T PF01156_consen 160 GNVTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG--SDG 237 (312)
T ss_dssp -SSSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred CCCCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc--cCC
Confidence 999999999999999999999999999999999999999999999999987 57899999999999998877633 455
Q ss_pred CccccccccchHHHHHHH-hcCCcee-eEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHH
Q 019503 255 NFSFKSIFLHDPVSFVAL-VRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLN 331 (340)
Q Consensus 255 ~~~~~~~~l~D~la~~~~-~~P~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~ 331 (340)
+++||++|++++ ++|++|+ +++.+++|+++| .+||+|++|+.. +.+.+|++|+.++|.++|++
T Consensus 238 ------~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t~~d~~~--------~~~~~~~~v~~~vd~~~f~~ 303 (312)
T PF01156_consen 238 ------FPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQTVVDREG--------SSGGPNVRVATDVDVDAFFD 303 (312)
T ss_dssp ------EE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEEEEETTS--------TTSSECEEEEEEE-HHHHHH
T ss_pred ------cccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceEEEeccc--------cCCCCcEEEeeecCHHHHHH
Confidence 999999999999 9999976 889999999996 899999998621 24678999999999999999
Q ss_pred HHHHHHhc
Q 019503 332 YIKRLLMK 339 (340)
Q Consensus 332 ~l~~~l~~ 339 (340)
+|+++|.+
T Consensus 304 ~~~~~l~~ 311 (312)
T PF01156_consen 304 LLLERLAR 311 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999975
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=7.8e-71 Score=522.21 Aligned_cols=285 Identities=24% Similarity=0.352 Sum_probs=253.7
Q ss_pred CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEee--cCCCCHHHHHHHHHHHHHHhCC-CCCCccccCCCCCCCCCCCcc
Q 019503 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTI--FGNVTTEDATRNALTLCEMAGC-PGVPVAEGSPEPLKGGKPRVA 96 (340)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv--~Gn~~~~~~~~n~~~lL~~~g~-~dIPV~~Ga~~pl~~~~~~~~ 96 (340)
+|||||||+|+||++||+|||++|++||+|||++ +||++.+++++|++++|+.+|+ .|||||+|+..||... ...
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~~--~~~ 78 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGSRAVNPF--PRS 78 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCCcCcccC--ccc
Confidence 5899999999999999999999999999999999 9999999999999999999999 8999999999999431 122
Q ss_pred ccccCCCCCCCCCCC----CCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCC
Q 019503 97 EFAHGSDGMGNISLT----PPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAF 172 (340)
Q Consensus 97 ~~~hG~dglg~~~~p----~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 172 (340)
...|+.+|+++.+.+ .+.......+|+++|+++++++|++||||++|||||||+|++++|++.++||+||+|||++
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~ 158 (312)
T cd02647 79 WRRDAAFSVDHLPILNERYTVETPLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGV 158 (312)
T ss_pred cccccccCcCcCCCCccccCCCCCcCcchHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCcc
Confidence 345666666543222 1122334678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHH----HHHHHHhcCChhhHHHHHHHHHHH
Q 019503 173 FALGNV-----NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDA----DFLELRQSKGRYVQLLGDMCKFYR 243 (340)
Q Consensus 173 ~~~Gn~-----~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~ 243 (340)
..+||+ +|.+|||||+|||||++||+|++|++|+|||+|+++.++++ +++++.+.+++.++|+.+++++|.
T Consensus 159 ~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (312)
T cd02647 159 DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFLETDRQRFAAQRLPASDLAGQGYALVK 238 (312)
T ss_pred CCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 889998 99999999999999999999999999999999999999999 566677777899999999999998
Q ss_pred HHhhhccCCCCCccccccccchHHHHHHHhcCCceeeEeee-EEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEE
Q 019503 244 DWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGV-VRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAW 322 (340)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~l~~~~~~~-v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~ 322 (340)
+++ +..| +++||++|++++++|++++.++.+ ++||++|.+||||++|.. .+|++|++
T Consensus 239 ~~~----~~~g------~~~hD~lava~~~~p~~~~~~~~~~v~Ve~~g~t~G~Tv~d~~------------~~n~~v~~ 296 (312)
T cd02647 239 PLE----FNST------YYMWDVLTTLVLGAKEVDNTKESLILEVDTDGLSAGQTVTSPN------------GRPLTLVT 296 (312)
T ss_pred hhc----CCCC------ccccHHHHHHHHcCchhcccccccceEEEECCCCCceEEEcCC------------CCCeEEEE
Confidence 876 4566 899999999999999999998888 999999989999999853 35899999
Q ss_pred ecCHHH
Q 019503 323 TVNVDK 328 (340)
Q Consensus 323 ~vD~~~ 328 (340)
++|.+.
T Consensus 297 ~vd~~~ 302 (312)
T cd02647 297 SNNSYG 302 (312)
T ss_pred eeCccc
Confidence 999986
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.1e-69 Score=516.40 Aligned_cols=280 Identities=34% Similarity=0.500 Sum_probs=244.7
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCC-CeEEEEEeecCCCCHHHHHHHHHHHHHHhCCC------------------CCC
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCP------------------GVP 79 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~------------------dIP 79 (340)
++|||||||+|+||++||+|||++|+ ++|+|||+|+||++++++++|++++|+++|+. +||
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p~~~ev~gITtv~GN~~~~~~~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~~iP 80 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSPEEVDVALISLTFGNTTLDHALRNVLRLFHVLERERAWRATPGVRYRAFSADAEKP 80 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCcCHHHHHHHHHHHHHHhCCcccccccccccccccccCCCCC
Confidence 57999999999999999999999999 99999999999999999999999999999987 699
Q ss_pred -ccccCCCCCCCCCCCccccccCCCCCCCCCC-CCCC-------------CCCCCccHHHHHHHHHHcCCC-cEEEEEec
Q 019503 80 -VAEGSPEPLKGGKPRVAEFAHGSDGMGNISL-TPPK-------------AKKCDKNASEFLVDKVSEYPG-EVSILALG 143 (340)
Q Consensus 80 -V~~Ga~~pl~~~~~~~~~~~hG~dglg~~~~-p~~~-------------~~~~~~~a~~~l~~~~~~~p~-~vtila~G 143 (340)
||+|+.+||.+.. ..+.++||.||||+..+ +++. ..+...+|+++|+++++++|+ +|+||++|
T Consensus 81 ~V~~Ga~~PL~~~~-~~a~~~HG~dGlgg~~~~~p~~~p~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~p~~~itivalG 159 (367)
T cd02648 81 IVASGSDQPLEGER-LTASYFHGRDGLSGVHWLHPDFTPVETWIPEIVAPLTPSDKPAYDVILDILREEPDHTVTIAALG 159 (367)
T ss_pred EEEcCCCcccCCCC-cccCccCCCCCCCCccccCCccccccccccccccccCcCCccHHHHHHHHHHhCCCCcEEEEEcc
Confidence 9999999998754 45678999999999764 2111 223567899999999999985 69999999
Q ss_pred chhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc----------CCcEEEEecccccc
Q 019503 144 PLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS----------GANIAVVGINITTQ 213 (340)
Q Consensus 144 PLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s----------~~~i~~v~ldvt~~ 213 (340)
||||||+|++++|++.++||+||+|||++..+||++|.+|||||+|||||++||++ ++|++|+|||+|++
T Consensus 160 PLTNiA~al~~~P~~~~~Ik~IviMGG~~~~~GN~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~ 239 (367)
T cd02648 160 PLTNLAAAARKDPETFAKVGEVVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTG 239 (367)
T ss_pred cHHHHHHHHHHChHHHhhhcEEEEeCCcccCCCCCCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999878999999999999999999999984 56999999999999
Q ss_pred cccCHHHH-----HHHHh--cCChhhHHHHHH-----HHHHHHHhhhccCCCCCccccccccchHHHHHHHhcCC-----
Q 019503 214 VKLTDADF-----LELRQ--SKGRYVQLLGDM-----CKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPD----- 276 (340)
Q Consensus 214 ~~~~~~~~-----~~l~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~----- 276 (340)
+.++.+++ +.+.+ .+++.++|+.++ +++|++++.+.++..|. .-+++||++|++++++|+
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~lHD~lava~~i~p~~~~~~ 316 (367)
T cd02648 240 HTLPYSSLFATYVTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRS---ELFEMHDPLAVWYAIFADMPATG 316 (367)
T ss_pred eeeCHHHhhhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCc---cCCCCCcHHHhHhhcCccccccc
Confidence 99998774 44455 568899965554 45888888766555550 003899999999999999
Q ss_pred -----ceeeEeeeEEEEecC-CcceeEEEecC
Q 019503 277 -----LFTFKKGVVRVETQG-ICMGHTLMDQG 302 (340)
Q Consensus 277 -----l~~~~~~~v~V~~~g-~~~G~tv~d~~ 302 (340)
+|++++.+|+||++| .+||+|++|++
T Consensus 317 ~~~~~~~~~~~~~v~Ve~~g~~trG~tV~D~~ 348 (367)
T cd02648 317 SIDGNGWKHTPRDFRVETSGQWTRGMCVVDRR 348 (367)
T ss_pred ccccceEEEEEecEEEEeCCCCCCceEEEecC
Confidence 899999999999997 79999999964
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=417.74 Aligned_cols=317 Identities=37% Similarity=0.491 Sum_probs=265.1
Q ss_pred CcccccCCCCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCC
Q 019503 9 SGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (340)
Q Consensus 9 ~~~~~~~~~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl 88 (340)
.....+.+..+++||||||+|.||++||++++.+|+++++|||||+||+.++++++||+++|+.+||.+||||.|+.+||
T Consensus 11 ~~~~~~~~~~~~~iiid~D~~~Dd~~al~la~~~~~~~ilglTtv~Gn~~~~~t~~NA~~~L~l~~r~dIPV~~Ga~kpl 90 (350)
T KOG2938|consen 11 IIFELDAASYKRKIIIDCDPGSDDAFALLLALLGPELEILGLTTVHGNVTVEDTDRNALDLLSLLGRLDIPVYEGAAKPL 90 (350)
T ss_pred ccccccccccceeEEEeCCCCcccHHHHHHHhcCccceeEeeeEeeCCccHhhhhhhHHHHHHhcCCcCCCchhcccccc
Confidence 33344677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEe
Q 019503 89 KGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVL 168 (340)
Q Consensus 89 ~~~~~~~~~~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviM 168 (340)
......++.++||.||+++..+|+|......+++++++++...++|++||+|++|||||||++++.+|++.+++|+++||
T Consensus 91 ~~~~~~~a~~~hG~dGl~d~~~~~~~~~~~~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivim 170 (350)
T KOG2938|consen 91 IRSPNDWANAFHGIDGLGDILLPPPRDDINVGHGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIM 170 (350)
T ss_pred cCCccchhhhhccccccCCcccCCccccccccccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhccccEEEe
Confidence 98876688999999999998888877777788999999998889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccccccccCCHHHHHHHHhcC-CcEEEEecccccccccCHHHHHHHHh---cCChhhHHHHHHHHHHHH
Q 019503 169 GGAFFALGNVNPAAEANIYGDPEAADVVFTSG-ANIAVVGINITTQVKLTDADFLELRQ---SKGRYVQLLGDMCKFYRD 244 (340)
Q Consensus 169 GG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~-~~i~~v~ldvt~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~ 244 (340)
||++++.||+++.|||||+.|||||++||+++ .+++++|+++|++..++....-.+.. ..+++..|+.-....++.
T Consensus 171 GG~~~~~gnv~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (350)
T KOG2938|consen 171 GGNYYGNGNVTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQV 250 (350)
T ss_pred ccccccccCcCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhc
Confidence 99999889999999999999999999999997 68889999999999988766655443 233444444333322221
Q ss_pred HhhhccCCCCCccccccccchHHHHHHHhcCCceeeEe--eeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEE
Q 019503 245 WHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKK--GVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAW 322 (340)
Q Consensus 245 ~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~l~~~~~--~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~ 322 (340)
.. +..|... +..+|..+++++++|+.+-.+. ..+.+.+..+++|+.++++-... .....+++...
T Consensus 251 ~~-~~~G~~~------~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~ 317 (350)
T KOG2938|consen 251 YN-GAYGNIF------TPYPDNIYVAFAIFPDPLAAKTVYVSVDVLLDSPTRGQMVVDHLPAK------LDYPANVTKIT 317 (350)
T ss_pred cc-ccCCccC------CCCCcHHHHHHHhhhhhhhhhhhhheeeeeecCcceeeeEEecchhh------hcccccceeec
Confidence 11 1123332 6689999999999999887653 45667777899999999842110 12357899999
Q ss_pred ecCHHHHHHHHHHHHh
Q 019503 323 TVNVDKVLNYIKRLLM 338 (340)
Q Consensus 323 ~vD~~~f~~~l~~~l~ 338 (340)
++|..+|+..+...+.
T Consensus 318 ~~~~~~f~~~~~~~l~ 333 (350)
T KOG2938|consen 318 TVDVVKFLTLRIQVLG 333 (350)
T ss_pred ccccchheehhhhhhh
Confidence 9999999998887764
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=3.4e-47 Score=355.92 Aligned_cols=240 Identities=27% Similarity=0.393 Sum_probs=184.3
Q ss_pred EEEecCCC--chHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCC-Ccccc
Q 019503 22 LIIDTDPG--IDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKP-RVAEF 98 (340)
Q Consensus 22 viiDtD~G--~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~-~~~~~ 98 (340)
||||||+| +||++||+||+++|+++|+|||+++||++.+ .|+..++..+||.||||++ .+|+..... ....+
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p~~~llgIT~~~GN~~~~---~~~~~~n~~~gr~dIPVg~--~~~~~~~~~~~~~~~ 75 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQKCDLLAVTITLADASAR---RAIDAVNRFYGRGDIPIGA--DYHGWPEDAKDHAKF 75 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCCCCceEEEEecCCcccHh---HHHHHHHHhcCCCCCcEee--CCCCCCCccccccce
Confidence 69999999 7999999999999999999999999999887 5667777789999999965 456544321 12333
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHHh------CCch-hhccceEEEec
Q 019503 99 AHGSDGMGNISLTPPK-AKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR------DSSF-ASKVKNIVVLG 169 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~-~~~~~~~a~~~l~~~~~~~-p~~vtila~GPLTNlA~al~~------~P~~-~~~i~~iviMG 169 (340)
.||.++++ .+. ......+|+++|+++++++ |++||||++|||||||++|+. +|++ .+|||+|||||
T Consensus 76 ~~~~~~~~-----~~~~~~~~~~~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMG 150 (293)
T cd02652 76 LLEGDRLH-----HDLESAEDALDAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMG 150 (293)
T ss_pred eCCCCCCC-----CcccccccCccHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeC
Confidence 44444332 221 1223468999999999987 789999999999999999999 9999 58999999999
Q ss_pred CCC-CCCCCCCccccccccCCHHHHHHHHhc----CCcEEE--EecccccccccCHHHHHHHHhcCChhhHHHHHHHHHH
Q 019503 170 GAF-FALGNVNPAAEANIYGDPEAADVVFTS----GANIAV--VGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFY 242 (340)
Q Consensus 170 G~~-~~~Gn~~~~aE~N~~~DPeAA~~Vl~s----~~~i~~--v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (340)
|++ ...||++ .+||||++||+||++||++ ++|++| +++|+++++..+...... ....+ .+.+.|
T Consensus 151 G~~~~~~Gn~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~~~~~-~~~~~-------p~~~~y 221 (293)
T cd02652 151 GAFYDPDGNVQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVLVIA-HPFNT-------PVFAAY 221 (293)
T ss_pred CCccCCCCCcc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchhhhhc-ccccc-------hHHHHH
Confidence 997 3569988 9999999999999999999 899988 699999998776642111 11112 223334
Q ss_pred HHHhhhccCCCCCccccccccchHHHHHHHhcCC--ceeeEe-----eeEEEEecCC
Q 019503 243 RDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPD--LFTFKK-----GVVRVETQGI 292 (340)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~--l~~~~~-----~~v~V~~~g~ 292 (340)
..+. .. .++||+++++++++|+ +|+..+ .+|+|..+|.
T Consensus 222 ~~~~------~~------~~~wD~~t~l~av~~~~~~F~~~~~~~g~g~v~~~~~G~ 266 (293)
T cd02652 222 WPRS------HR------RPLWDPLTLLAAVRGGGMLFDLREVQLGPGRVEVDSSGV 266 (293)
T ss_pred Hhcc------CC------ccchHHHHHHHeeCCcCCccccccccCCCceEEEcCCCC
Confidence 3321 12 6899999999999997 888654 4566555553
No 18
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=98.29 E-value=8.2e-07 Score=81.52 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred eEEEecCC--CchHHHHHHHHh-cCCCCeEEEEEeecCCC-CHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcc
Q 019503 21 KLIIDTDP--GIDDSMTILMAF-QTPELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 96 (340)
Q Consensus 21 ~viiDtD~--G~DD~~AL~~al-~~p~v~v~gIttv~Gn~-~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~ 96 (340)
||||=||+ .+||...|+-+| .+.++||.||+++.+-- ...-..+.+.++++.+++ ..|=-.=-..+...+....+
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsNe~dieGivattS~~~~~~~~~~~i~~iIdaY~k-v~pNL~~H~~~yPs~e~L~s 79 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSNEFDIEGIVATTSTWHWSGVHPEWIHRIIDAYEK-VYPNLNKHAPGYPSPEYLRS 79 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGGGSEEEEEEE--BTTB------HHHHHHHHHHHH-HHHHHTTTSTT---HHHHHH
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhccccceeEEEEecccccCCCCCHHHHHHHHHHHHH-HHHHHHhcCCCCCCHHHHHH
Confidence 79999999 499999998655 57789999999887510 111233456677776653 11100000000000000001
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHHh---------CCchhhccceEE
Q 019503 97 EFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKR---------DSSFASKVKNIV 166 (340)
Q Consensus 97 ~~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~-p~~vtila~GPLTNlA~al~~---------~P~~~~~i~~iv 166 (340)
-...|.-..| .+ ..+...+.++.++|++.+.+. +.+|.|++-|-...||.||.. .++|.+|+ +|+
T Consensus 80 ~vk~G~~~yg---~~-~~G~~~~s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~Kl-rvy 154 (260)
T PF07632_consen 80 IVKQGNPVYG---MP-AVGEGKDSEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARFVSKL-RVY 154 (260)
T ss_dssp TEEE--SS-G---GG-G-STT---HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHTE-EEE
T ss_pred HHccCCcccC---cc-cCCCCCCChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhhE-EEE
Confidence 1112221100 00 011112478999999998875 789999999999999999998 78899999 577
Q ss_pred EecC
Q 019503 167 VLGG 170 (340)
Q Consensus 167 iMGG 170 (340)
..++
T Consensus 155 ~I~d 158 (260)
T PF07632_consen 155 SISD 158 (260)
T ss_dssp EES-
T ss_pred eccC
Confidence 7665
No 19
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=75.26 E-value=3.2 Score=35.95 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCeEEEEEeecCCCCH
Q 019503 33 SMTILMAFQTPELEILGLTTIFGNVTT 59 (340)
Q Consensus 33 ~~AL~~al~~p~v~v~gIttv~Gn~~~ 59 (340)
-.||.+.+++|++||+|+..|..|+..
T Consensus 71 E~Al~~v~~h~~IeVLG~iAVASnT~~ 97 (180)
T PF14097_consen 71 EQALEYVANHPDIEVLGAIAVASNTHG 97 (180)
T ss_pred HHHHHHHHcCCCceEEEEEEEEecCCC
Confidence 479999999999999999999888653
No 20
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=74.54 E-value=7.3 Score=29.63 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=30.5
Q ss_pred eEEEecCCCchH-HHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 21 KLIIDTDPGIDD-SMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 21 ~viiDtD~G~DD-~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
.+|||+-||..| .++++-.+. .-..+-|| +.-.. +..-++|.++++.+.++||.
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~--~~g~ivVT-TPq~l----a~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP--IDGAIVVT-TPQEL----ALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH----SEEEEEE--CCC------HHHHHHHHHHHHCTT-EEE
T ss_pred EEEEeCCCCCCcHHHHHHHhCC--CCeEEEEe-CCHHH----HHHHHHHHHHHHHhcCCCcE
Confidence 589999999655 566666665 22333333 33332 34467888888888889985
No 21
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=72.48 E-value=16 Score=31.28 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-...|.+.+...+ ++||++-.. ++|..|...|++ +|+++||.+.. +...+..|.|.+.+-+-.
T Consensus 29 tT~~~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~~ 92 (161)
T PF00455_consen 29 TTTLELAKYLPDKK-NLTVVTNSL--PIANELSENPNI-----EVILLGGEVNP--------KSLSFVGPIALEALRQFR 92 (161)
T ss_pred hHHHHHHHHhhcCC-ceEEEECCH--HHHHHHHhcCce-----EEEEeCCEEEc--------CCCcEECchHHHHHHhhc
Confidence 34566778887764 799998764 678888888843 79999999863 445577899988888777
Q ss_pred CcEEEEeccc
Q 019503 201 ANIAVVGINI 210 (340)
Q Consensus 201 ~~i~~v~ldv 210 (340)
..+.+++.+-
T Consensus 93 ~d~afi~~~g 102 (161)
T PF00455_consen 93 FDKAFIGADG 102 (161)
T ss_pred cceEEecccE
Confidence 7888887663
No 22
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=70.39 E-value=1.7 Score=42.17 Aligned_cols=86 Identities=27% Similarity=0.316 Sum_probs=64.3
Q ss_pred CccHHHHHHHHHHcCC---CcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCC------CCCC------Ccccc
Q 019503 119 DKNASEFLVDKVSEYP---GEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFA------LGNV------NPAAE 183 (340)
Q Consensus 119 ~~~a~~~l~~~~~~~p---~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~------~Gn~------~~~aE 183 (340)
+++|++-..... +.| .++.+...+++|+.+.....++.-...+.+.+++++.... .|+. ...++
T Consensus 191 DPeAA~~vl~~~-k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~a 269 (350)
T KOG2938|consen 191 DPEAAHTVLTRT-KDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVYNGAYGNIFTPYPDNIYVA 269 (350)
T ss_pred ChHHHHHHHhcC-CCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcccccCCccCCCCCcHHHHH
Confidence 567777554444 333 3577889999999999999888888888889999998632 2432 34789
Q ss_pred ccccCCHHHHHHHHhcCCcEEE
Q 019503 184 ANIYGDPEAADVVFTSGANIAV 205 (340)
Q Consensus 184 ~N~~~DPeAA~~Vl~s~~~i~~ 205 (340)
||++-||-+++.++.+..-.+.
T Consensus 270 ~~i~~d~~~~~~~~~~~~~~~~ 291 (350)
T KOG2938|consen 270 FAIFPDPLAAKTVYVSVDVLLD 291 (350)
T ss_pred HHhhhhhhhhhhhhheeeeeec
Confidence 9999999999998887543333
No 23
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=64.20 E-value=25 Score=31.08 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=34.3
Q ss_pred CCCeEEEecCCC-------chHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG-------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G-------~DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|.|+.|+| .||+..++-.++ .|.+++.||.|-+|+..
T Consensus 109 ~~~~v~l~vdtG~~R~G~~~~~~~~l~~~i~~~~~l~l~Gl~th~~~~d 157 (218)
T PF01168_consen 109 KPLKVHLKVDTGMGRLGVRPEELEELAEAIKALPNLRLEGLMTHFAHAD 157 (218)
T ss_dssp STEEEEEEBESSSSSSSBECHHHHHHHHHHHHTTTEEEEEEEEBGSSTT
T ss_pred CceEEEEeecccccccCCCHHHHHHHHHHHhcCCCceEeeEeccccccC
Confidence 577899999986 588888887766 79999999999888764
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=61.37 E-value=35 Score=31.81 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-...|++.+... .++||++-.. ++|..|...|.+ ++++.||.+.. +.+....|.|.+.+=+-.
T Consensus 116 tT~~~la~~L~~~-~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~~--------~~~~~~G~~a~~~l~~~~ 179 (269)
T PRK09802 116 TTTFEIARLMRKH-TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLRR--------QSQSFYGDQAEQSLQNYH 179 (269)
T ss_pred hHHHHHHHhcCcC-CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEec--------CCCceECHHHHHHHHhcc
Confidence 3445566776543 2588888764 677777777764 68999999963 456678899998887767
Q ss_pred CcEEEEecc
Q 019503 201 ANIAVVGIN 209 (340)
Q Consensus 201 ~~i~~v~ld 209 (340)
+.+.+++.+
T Consensus 180 ~d~afig~~ 188 (269)
T PRK09802 180 FDMLFLGVD 188 (269)
T ss_pred CCEEEEcCc
Confidence 788888766
No 25
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=57.58 E-value=46 Score=32.48 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=46.1
Q ss_pred CCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecC------CCCHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG------NVTTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~G------n~~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
+.++||++=.=.|+|-.+|..++... ..||+||+--.+ .+...+-.+.|.++.+.+| ||.+
T Consensus 1 ~~~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LG---Ip~~ 67 (356)
T COG0482 1 MKKKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLG---IPLY 67 (356)
T ss_pred CCCcEEEEEccCCHHHHHHHHHHHHc-CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhC---CceE
Confidence 35789999999999999987766655 899999996532 3566666777888888877 5544
No 26
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=55.85 E-value=51 Score=30.32 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-+..|++.+... ++||++-+. ++|.+|..+|.+ ++++.||.+.. +.+.+..|. ++.+-+-.
T Consensus 103 sT~~~la~~L~~~--~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~--------~~~~~~G~~-~~~l~~~~ 164 (251)
T PRK13509 103 STAFLLGRELCGK--PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK--------SQSITLSPQ-GSENSLYA 164 (251)
T ss_pred HHHHHHHHHhCCC--CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC--------CcceeECHH-HHHHHhCc
Confidence 3345677777543 589988776 788888888764 68999999863 345677886 45443445
Q ss_pred CcEEEEeccc
Q 019503 201 ANIAVVGINI 210 (340)
Q Consensus 201 ~~i~~v~ldv 210 (340)
..+.+++.+-
T Consensus 165 ~d~aFig~~g 174 (251)
T PRK13509 165 GHWMFTSGKG 174 (251)
T ss_pred CCEEEECCCc
Confidence 6777777653
No 27
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.45 E-value=35 Score=28.84 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=38.6
Q ss_pred hHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCC
Q 019503 31 DDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLK 89 (340)
Q Consensus 31 DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~ 89 (340)
|++...+ ...+++++||++..|. -..-+.-+...|+..|..+|.|+.|-..|..
T Consensus 53 ~e~v~aA---~~~dv~vIgvSsl~g~--h~~l~~~lve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 53 EEAVRAA---VEEDVDVIGVSSLDGG--HLTLVPGLVEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHH---HhcCCCEEEEEeccch--HHHHHHHHHHHHHHhCCcceEEeecCccCch
Confidence 4444433 3357999999998875 2334456777888889999999988877654
No 28
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=50.53 E-value=44 Score=32.62 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=38.3
Q ss_pred CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCC--------HHHHHHHHHHHHHHhCCCCCCccc
Q 019503 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT--------TEDATRNALTLCEMAGCPGVPVAE 82 (340)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~--------~~~~~~n~~~lL~~~g~~dIPV~~ 82 (340)
+||++=.-.|+|-++|.+++... ..||.||+-...+.. .++....|+++-+.+| ||.+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~-G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~v 67 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ-GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHYV 67 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC-T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EEE
T ss_pred CeEEEEccCCHHHHHHHHHHHhh-cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEEE
Confidence 57888888999999998887765 699999998765432 2344667788877766 77653
No 29
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.25 E-value=31 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=35.8
Q ss_pred HhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCC
Q 019503 39 AFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (340)
Q Consensus 39 al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl 88 (340)
++...+.+++|+|+..|.+ ....+.+...|+..|..++||..|-.-+.
T Consensus 45 aa~~~~adiVglS~L~t~~--~~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 45 AAIETDADAILVSSLYGHG--EIDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHHHcCCCEEEEeccccCC--HHHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 3444578999999887763 34456777888888877899999976544
No 30
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=48.56 E-value=35 Score=31.80 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCC--CCCccccCCCCCCCC-CCCccccccCCCC--CCCCC------------CCCCCCCCCCccHHHHH
Q 019503 64 RNALTLCEMAGCP--GVPVAEGSPEPLKGG-KPRVAEFAHGSDG--MGNIS------------LTPPKAKKCDKNASEFL 126 (340)
Q Consensus 64 ~n~~~lL~~~g~~--dIPV~~Ga~~pl~~~-~~~~~~~~hG~dg--lg~~~------------~p~~~~~~~~~~a~~~l 126 (340)
.-+.++|+.++-- +|-.+-|-..-+.+. -....+..||.+| ||-+. +.+....+....+.+||
T Consensus 118 ~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i 197 (304)
T COG2248 118 RRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFI 197 (304)
T ss_pred HHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHH
Confidence 3456667666521 333333333222111 0133467899886 55321 11111224457778887
Q ss_pred HHHHHcCCCcEEEEEecchh
Q 019503 127 VDKVSEYPGEVSILALGPLT 146 (340)
Q Consensus 127 ~~~~~~~p~~vtila~GPLT 146 (340)
++. .| -.++.-||.|
T Consensus 198 ~e~---~P--~v~ii~GPpt 212 (304)
T COG2248 198 LEK---RP--DVLIIGGPPT 212 (304)
T ss_pred Hhc---CC--CEEEecCCch
Confidence 654 34 5788889998
No 31
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=46.39 E-value=73 Score=28.81 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCC-CcEEEEEecchhHHHHHHHhCCchhhccc-eEEEecCCCCC-CCCCCccccccccCCHHHHHHHHh
Q 019503 122 ASEFLVDKVSEYP-GEVSILALGPLTNLALAIKRDSSFASKVK-NIVVLGGAFFA-LGNVNPAAEANIYGDPEAADVVFT 198 (340)
Q Consensus 122 a~~~l~~~~~~~p-~~vtila~GPLTNlA~al~~~P~~~~~i~-~iviMGG~~~~-~Gn~~~~aE~N~~~DPeAA~~Vl~ 198 (340)
-+++|.+.-...+ -++.++..|.=-|=...-...++..+..+ .+|||+|.-.. +| |.+|+.+|.
T Consensus 18 v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG-------------P~kARE~l~ 84 (277)
T COG1927 18 VVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG-------------PKKAREILS 84 (277)
T ss_pred HHHHHHHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-------------chHHHHHHh
Confidence 3556655544333 35777777776666544444455565555 67888876432 33 889998887
Q ss_pred -cCCcEEEEe
Q 019503 199 -SGANIAVVG 207 (340)
Q Consensus 199 -s~~~i~~v~ 207 (340)
|++|..+++
T Consensus 85 ~s~~Paiiig 94 (277)
T COG1927 85 DSDVPAIIIG 94 (277)
T ss_pred hcCCCEEEec
Confidence 788877776
No 32
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=46.31 E-value=86 Score=28.64 Aligned_cols=72 Identities=7% Similarity=0.238 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-+..|++.+... ++||++-.+ ++|..|...|++ ++++.||.+.. +.+....|.|.+.+=+-.
T Consensus 103 tT~~~l~~~L~~~--~ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~~--------~~~~~~G~~a~~~l~~~~ 165 (240)
T PRK10411 103 STCWYLARQLPDI--NIQVFTNSH--PICQELGKRERI-----QLISSGGTLER--------KYGCYVNPSLISQLKSLE 165 (240)
T ss_pred HHHHHHHHhhCCC--CeEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEeC--------CCCceECHHHHHHHHhcC
Confidence 3345566666532 588887665 466667777763 58999999863 455677898888876666
Q ss_pred CcEEEEecc
Q 019503 201 ANIAVVGIN 209 (340)
Q Consensus 201 ~~i~~v~ld 209 (340)
....+++.+
T Consensus 166 ~d~afis~~ 174 (240)
T PRK10411 166 IDLFIFSCE 174 (240)
T ss_pred CCEEEEece
Confidence 777777765
No 33
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=44.48 E-value=1.1e+02 Score=28.18 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc
Q 019503 120 KNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 199 (340)
Q Consensus 120 ~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s 199 (340)
.+...++++.+...+. +|+++-+. |+|..|...|.+ .+++.||.+.. +.+.+..|.|.+.+=+-
T Consensus 100 GTT~~~la~~L~~~~~-ltviTNsl--~ia~~l~~~~~~-----~vi~~GG~~~~--------~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 100 GTTTLALARALPDDNN-LTVITNSL--NIAAALLEKPNI-----EVILLGGTVRK--------KSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CcHHHHHHHHhCcCCC-eEEEeCCH--HHHHHHHhCCCC-----eEEEeCcEEEc--------CCCeEEcHHHHHHHHhC
Confidence 4556777787776544 88888875 667777777743 56899999863 45567788887777666
Q ss_pred CCcEEEEeccc
Q 019503 200 GANIAVVGINI 210 (340)
Q Consensus 200 ~~~i~~v~ldv 210 (340)
.+...+++.+-
T Consensus 164 ~~d~aFig~~g 174 (253)
T COG1349 164 NFDKAFIGADG 174 (253)
T ss_pred cccEEEEeccc
Confidence 77888887764
No 34
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=43.31 E-value=98 Score=27.94 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=30.6
Q ss_pred CCCeEEEecCCC---------chHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G---------~DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|..|+| .+++..++-.+. .|.+++.|+.|-++...
T Consensus 119 ~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~ 169 (229)
T TIGR00044 119 PPLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTD 169 (229)
T ss_pred CCceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCC
Confidence 346778777772 367877776665 68899999999888754
No 35
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=41.74 E-value=95 Score=24.41 Aligned_cols=64 Identities=14% Similarity=0.292 Sum_probs=41.3
Q ss_pred eEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCC
Q 019503 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKG 90 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~ 90 (340)
-++++.+...++...-+ ...+.+++++|+...+ .....+++.++++..+. +++|..|-..+...
T Consensus 30 v~~l~~~~~~~~~~~~i---~~~~pdiV~iS~~~~~--~~~~~~~~~~~~~~~p~-~~~ivvGG~~~t~~ 93 (125)
T cd02065 30 VIDLGVDVPPEEIVEAA---KEEDADVVGLSALSTT--HMEAMKLVIEALKELGI-DIPVVVGGAHPTAD 93 (125)
T ss_pred EEEcCCCCCHHHHHHHH---HHcCCCEEEEecchHh--HHHHHHHHHHHHHhcCC-CCeEEEeCCcCCcc
Confidence 34455555445544322 2356789999987766 33566777788777653 89999887665543
No 36
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=38.92 E-value=1.5e+02 Score=27.24 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-+..|.+.+... .++||++-.. ++|..|...|++ +|++.||.+.. +.+.+..+.|.+.+=+-.
T Consensus 102 tT~~~la~~L~~~-~~ltvvTnsl--~i~~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~~~~~l~~~~ 165 (252)
T PRK10681 102 TTTPWIIEAIDNE-LPFTAVCYSL--NTFLALQEKPHC-----RAILCGGEFHA--------SNAIFKPLDFQQTLDNIC 165 (252)
T ss_pred ccHHHHHHhcCCC-CCeEEEECCH--HHHHHHhhCCCC-----EEEEECcEEec--------CcceeeCHHHHHHHHhhC
Confidence 3344566666543 2588888643 466777777764 68999999863 345678888887776767
Q ss_pred CcEEEEecc
Q 019503 201 ANIAVVGIN 209 (340)
Q Consensus 201 ~~i~~v~ld 209 (340)
+.+.+++.+
T Consensus 166 ~D~afig~~ 174 (252)
T PRK10681 166 PDIAFYSAA 174 (252)
T ss_pred CCEEEEeCc
Confidence 788888765
No 37
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=37.75 E-value=1.7e+02 Score=26.83 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcC
Q 019503 121 NASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 200 (340)
Q Consensus 121 ~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~ 200 (340)
.-+..+.+.+... .++||++-.. ++|..|...|++ ++++.||.+.. +...+..|.|.+.+=+-.
T Consensus 101 tT~~~la~~L~~~-~~ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~~--------~~~~~~G~~a~~~l~~~~ 164 (252)
T PRK10906 101 TTPEAVAHALLNH-SNLRIVTNNL--NVANTLMAKEDF-----RIILAGGELRS--------RDGGIIGEATLDFISQFR 164 (252)
T ss_pred HHHHHHHHHhcCC-CCcEEEECcH--HHHHHHhhCCCC-----EEEEECCEEec--------CCCccCCHHHHHHHHhcc
Confidence 3345566666543 2588887654 567777777764 58899999863 345578899888887767
Q ss_pred CcEEEEecc
Q 019503 201 ANIAVVGIN 209 (340)
Q Consensus 201 ~~i~~v~ld 209 (340)
..+.+++.+
T Consensus 165 ~d~afi~~~ 173 (252)
T PRK10906 165 LDFGILGIS 173 (252)
T ss_pred CCEEEEcCC
Confidence 778777765
No 38
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=34.92 E-value=9.9 Score=36.80 Aligned_cols=35 Identities=37% Similarity=0.644 Sum_probs=23.1
Q ss_pred HHHHHHHcCC-CcEEEEEecchhHHHHHHHhCCchhhccceEEE
Q 019503 125 FLVDKVSEYP-GEVSILALGPLTNLALAIKRDSSFASKVKNIVV 167 (340)
Q Consensus 125 ~l~~~~~~~p-~~vtila~GPLTNlA~al~~~P~~~~~i~~ivi 167 (340)
.+.+.+..-| +.+||||+||||.=++ .++|+++.=
T Consensus 118 vireEvt~iP~dg~~vIATGPLTs~~L--------a~~i~~ltG 153 (439)
T COG1206 118 VIREEVTEIPPDGITVIATGPLTSDAL--------AEKIKELTG 153 (439)
T ss_pred EEccccccCCCCCcEEEecCCCCCHHH--------HHHHHHhhC
Confidence 3444455555 7799999999996554 445565543
No 39
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.97 E-value=65 Score=26.77 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCC
Q 019503 42 TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (340)
Q Consensus 42 ~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl 88 (340)
..+.+++++++..+. ....+++....|+..+..+++|..|-.-+.
T Consensus 52 ~~~~d~V~lS~~~~~--~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~ 96 (137)
T PRK02261 52 ETDADAILVSSLYGH--GEIDCRGLREKCIEAGLGDILLYVGGNLVV 96 (137)
T ss_pred HcCCCEEEEcCcccc--CHHHHHHHHHHHHhcCCCCCeEEEECCCCC
Confidence 346789999887663 344556777777777777899988875543
No 40
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=33.63 E-value=1.6e+02 Score=28.16 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCCeEEEecCCC-------c-hHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG-------I-DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G-------~-DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|+-|+| . +++..++-.+. .|.+++.||.+-.|...
T Consensus 120 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~h~g~~~ 169 (353)
T cd06820 120 RPLEVLVEVDSGMNRCGVQTPEDAVALARAIASAPGLRFRGIFTYPGHSY 169 (353)
T ss_pred CeeEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCcEEEEEEecCCccC
Confidence 456899999986 3 67777776555 68999999999888654
No 41
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.46 E-value=1.1e+02 Score=28.52 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=33.2
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
-..|||||=||..|.-+-++.-.. + -++ |++..|.+... -+++.++++...++||-
T Consensus 167 ~D~vIID~PP~~g~~d~~i~~~~~-~-g~v-iVt~p~~~~~~----~v~ka~~~~~~~~~~vl 222 (265)
T COG0489 167 YDYVIIDTPPGTGDADATVLQRIP-D-GVV-IVTTPGKTALE----DVKKAIDMLEKAGIPVL 222 (265)
T ss_pred CCEEEEeCCCCchHHHHHHHhccC-C-eEE-EEeCCccchHH----HHHHHHHHHHhcCCceE
Confidence 467999999998888776666443 3 222 33456765544 33444444444455554
No 42
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=33.11 E-value=1.9e+02 Score=26.52 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhcCCc
Q 019503 123 SEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGAN 202 (340)
Q Consensus 123 ~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s~~~ 202 (340)
+-.|++.+...+ ++||++-.. ++|..|...+. .+ ++++.||.+.. +.+....|.|.+.+=+-...
T Consensus 103 ~~~la~~L~~~~-~ltVvTnsl--~ia~~l~~~~~---~~-~v~l~GG~~~~--------~~~~~~G~~a~~~l~~~~~D 167 (256)
T PRK10434 103 VLQMVPLLSRFN-NITVMTNSL--HIVNALSELDN---EQ-TILMPGGTFRK--------KSASFHGQLAENAFEHFTFD 167 (256)
T ss_pred HHHHHHHhccCC-CeEEEECCH--HHHHHHhhCCC---CC-EEEEECCEEeC--------CCCeEECHHHHHHHHhCcCC
Confidence 344556665432 477777654 35555554332 12 68999999863 34567889988877666677
Q ss_pred EEEEecc
Q 019503 203 IAVVGIN 209 (340)
Q Consensus 203 i~~v~ld 209 (340)
+.+++.+
T Consensus 168 ~afi~~~ 174 (256)
T PRK10434 168 KLFIGTD 174 (256)
T ss_pred EEEEcCc
Confidence 7777765
No 43
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=32.33 E-value=1.8e+02 Score=28.94 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHcCCCcEEEE---EecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 120 KNASEFLVDKVSEYPGEVSIL---ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 120 ~~a~~~l~~~~~~~p~~vtil---a~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
.+-++.|.+.++....++.++ --|.++=.|.|+..+..-..+++.++.|||-++..-|
T Consensus 153 dDYi~~l~~~i~~~G~~v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 153 EDYIDYLIEFIRFLGPDIHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 455677888876553234443 3466667777877666556679999999999876433
No 44
>PRK02628 nadE NAD synthetase; Reviewed
Probab=32.32 E-value=1.1e+02 Score=32.53 Aligned_cols=57 Identities=30% Similarity=0.452 Sum_probs=45.4
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcC------CCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQT------PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~------p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~ 75 (340)
...+|+|---.|+|.+++++++.+. +..+|.||+. .|..+.+...+.+..+.+.+|-
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m-p~~~ss~~s~~~a~~la~~LGi 422 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM-PGFATTDRTKNNAVALMKALGV 422 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC-CCCCCCHHHHHHHHHHHHHhCC
Confidence 3578999999999999887776543 3578999986 7665667778899999999985
No 45
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=30.74 E-value=2.2e+02 Score=25.49 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=26.7
Q ss_pred EEEecCC-----Cc--hHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 22 LIIDTDP-----GI--DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 22 viiDtD~-----G~--DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
|-||||. |+ +++..++-.+. .|.+++.||-|-+++..
T Consensus 123 l~id~~~Gm~R~Gi~~~~~~~~~~~i~~~~~l~l~Gl~tH~a~~~ 167 (224)
T cd06824 123 IQVNISGEDSKSGVAPEDAAELAEAISQLPNLRLRGLMAIPAPTD 167 (224)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Confidence 3778876 34 46777765544 68899999998877644
No 46
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=28.90 E-value=63 Score=30.52 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCchHHH-HHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCC
Q 019503 18 NPAKLIIDTDPGIDDSM-TILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~-AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl 88 (340)
..-.+||||-||.+|.+ .+.--+... +=.=|+|+. .+-+..-+++-.++|.+..|||. |--..+
T Consensus 156 ~lDyLviDtPPGtsDehls~~~~~~~~--~gAviVTTP----Q~vAl~Dv~K~i~fc~K~~I~il-GvVENM 220 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSDEHLSLVQFLRES--DGAVIVTTP----QEVALQDVRKEIDFCRKAGIPIL-GVVENM 220 (300)
T ss_pred CcCEEEEeCCCCCChhhhheeeccccc--CceEEEeCc----hhhhhHHHHhhhhhhhhcCCceE-EEEecc
Confidence 35679999999988764 444333321 111123333 34455678888899999999985 433333
No 47
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=28.64 E-value=47 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.8
Q ss_pred CCCeEEEecCCCchHHHHHHH
Q 019503 18 NPAKLIIDTDPGIDDSMTILM 38 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~ 38 (340)
..--++++|+.+.||..|++-
T Consensus 34 ~~l~~~L~T~~s~DDI~AV~C 54 (65)
T PF09078_consen 34 DSLEVWLETSVSADDIIAVCC 54 (65)
T ss_dssp SEEEEEE-STSSHHHHHHHHT
T ss_pred CeEEEEECCCCChhhEEEEEE
Confidence 345799999999999999874
No 48
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.27 E-value=1.2e+02 Score=24.93 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.8
Q ss_pred hcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCC
Q 019503 40 FQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEP 87 (340)
Q Consensus 40 l~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~p 87 (340)
+...+.++++|++..+. ......-+.+.|+..|..+++|+.|-..|
T Consensus 49 a~e~~adii~iSsl~~~--~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 49 AVEADVHVVGVSSLAGG--HLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHcCCCEEEEcCchhh--hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 33447899999877654 23334555666666677789999985444
No 49
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=27.07 E-value=2.5e+02 Score=24.93 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCCeEEEecCCC-------c--hHHHHHHHHh-cCCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG-------I--DDSMTILMAF-QTPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G-------~--DD~~AL~~al-~~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|..|+| + ||+..++-.+ ..|.+++.||.+-.++..
T Consensus 115 ~~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~~~~l~~~Gi~sh~s~~~ 165 (222)
T cd00635 115 RVLDVLVQVNIGGEESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTE 165 (222)
T ss_pred CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHHcCCCCcEEEEEEECCCCC
Confidence 345677777765 2 5666665444 468899999988666554
No 50
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.92 E-value=1.2e+02 Score=25.36 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=34.1
Q ss_pred HhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCC
Q 019503 39 AFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPL 88 (340)
Q Consensus 39 al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl 88 (340)
+....+.+++|+|+..|.+ ....+.+.+.|+..|..+++|..|-..+.
T Consensus 47 aa~~~~adiVglS~l~~~~--~~~~~~~~~~l~~~gl~~~~vivGG~~vi 94 (134)
T TIGR01501 47 AAIETKADAILVSSLYGHG--EIDCKGLRQKCDEAGLEGILLYVGGNLVV 94 (134)
T ss_pred HHHHcCCCEEEEecccccC--HHHHHHHHHHHHHCCCCCCEEEecCCcCc
Confidence 3344578999999888753 33456677778888877889888875443
No 51
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=25.51 E-value=2.3e+02 Score=25.75 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcC-CCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQT-PELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~-p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~ 75 (340)
...+|++=.-.|+|.++.+.++.+. +..++.+++.-++..+ ......+..+.+.+|.
T Consensus 22 ~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~-~~~~~~a~~~a~~lgi 79 (248)
T cd00553 22 GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSS-EETREDAKELAEALGI 79 (248)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCC-HHHHHHHHHHHHHhCC
Confidence 3568999999999998877777553 2368899987777544 4456788999998884
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=24.93 E-value=1.3e+02 Score=28.36 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=38.0
Q ss_pred CccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEE
Q 019503 119 DKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIV 166 (340)
Q Consensus 119 ~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iv 166 (340)
..++.+.|.+.+..+.+.+.|++.|.-..+..++..+|.+.+++..++
T Consensus 144 ~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 144 GSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHV 191 (287)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE
Confidence 356677788888776677889999987788888888999999886543
No 53
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=23.78 E-value=3.2e+02 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC---------chHHHHHHHHhc--CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG---------IDDSMTILMAFQ--TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G---------~DD~~AL~~al~--~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|+.|.| .+++..|+-.+. .|.+.+.|+-|..|...
T Consensus 116 ~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~ 167 (227)
T cd06822 116 EPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGY 167 (227)
T ss_pred CCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCC
Confidence 457888888864 378888887774 68999999999988643
No 54
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=23.32 E-value=4.3e+02 Score=25.22 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=27.9
Q ss_pred CCCeEEEecCCC-----c---hHHHHHHHHhc-CCCCeEEEEEeecCC
Q 019503 18 NPAKLIIDTDPG-----I---DDSMTILMAFQ-TPELEILGLTTIFGN 56 (340)
Q Consensus 18 ~~~~viiDtD~G-----~---DD~~AL~~al~-~p~v~v~gIttv~Gn 56 (340)
.+.+|+|+.|+| + +++.+++-.+. .|.+++.||.+-.|.
T Consensus 124 ~~~~V~l~vd~G~~R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~y~G~ 171 (358)
T cd06819 124 VRLDVLVEIDVGQGRCGVPPGEAALALARTIAALPGLRFAGLQAYHGH 171 (358)
T ss_pred CceEEEEEECCCCCcCCCCChHHHHHHHHHHHhCCCceEeEEEeeCch
Confidence 456899999984 4 35777765544 678999999775553
No 55
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=22.50 E-value=3.9e+02 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.487 Sum_probs=28.5
Q ss_pred CCCeEEEecCCC-----c--hHHHHHHHHh---cCCCCeEEEEEeecCCC
Q 019503 18 NPAKLIIDTDPG-----I--DDSMTILMAF---QTPELEILGLTTIFGNV 57 (340)
Q Consensus 18 ~~~~viiDtD~G-----~--DD~~AL~~al---~~p~v~v~gIttv~Gn~ 57 (340)
.+.+|+|+.|+| + ++..++..+. ..+.+++.||.+-.|..
T Consensus 110 ~~~~V~l~ID~G~~R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~h~g~~ 159 (345)
T cd07376 110 VRLRVMLEVDVGGHRSGVRPEEAAALALADAVQASPGLRLAGVMAYEGHI 159 (345)
T ss_pred CeeEEEEEeCCCCCcCCCCCcHHHHHHHHHHhccCCCeEEeEEEeecchh
Confidence 356899999985 4 3555555443 46789999999888854
No 56
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=22.21 E-value=3.3e+02 Score=24.88 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=37.4
Q ss_pred CCCeEEEecCCCchHHHHHHHHhc------CCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQ------TPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~------~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
...+|++=.-.|.| .++|+++++ ...++|.+|+..+|....+. ..+..+.+.+| ||..
T Consensus 28 ~~~kilVa~SGG~D-S~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lg---I~~~ 91 (258)
T PRK10696 28 EGDRVMVCLSGGKD-SYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLG---VPYH 91 (258)
T ss_pred CCCEEEEEecCCHH-HHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhC---CCEE
Confidence 44678888878885 677877763 22579999998888543221 23455666555 6654
No 57
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=22.08 E-value=3.6e+02 Score=26.40 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred CCCeEEEecCCC-----c--h-HHHHHHHHhc-CCCCeEEEEEeecCC
Q 019503 18 NPAKLIIDTDPG-----I--D-DSMTILMAFQ-TPELEILGLTTIFGN 56 (340)
Q Consensus 18 ~~~~viiDtD~G-----~--D-D~~AL~~al~-~p~v~v~gIttv~Gn 56 (340)
.+-+|+|+.|+| + + |+.+++-.+. .+.+++.||-+-.|.
T Consensus 132 ~~l~V~lkVDtGm~R~Gv~~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 132 LTLRINLELDVGLHRGGFADPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred CceEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 456899999986 3 3 5778777665 578999999988774
No 58
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.06 E-value=4e+02 Score=25.99 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCC-HHHHHHHHHHHHHHhC
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-TEDATRNALTLCEMAG 74 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~-~~~~~~n~~~lL~~~g 74 (340)
..+|++=.-.|+|-++++.++... ..++.||+...++.. .....+.++++.+.+|
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~-G~~V~~v~~~~~~~~~~~~d~~~a~~va~~Lg 60 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA-GYEVTGVTFRFYEFNGSTEYLEDARALAERLG 60 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc-CCeEEEEEEecCCCCCChHHHHHHHHHHHHhC
Confidence 457888888999888877766554 589999987665432 2344567778887777
No 59
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=21.98 E-value=3.2e+02 Score=26.48 Aligned_cols=57 Identities=26% Similarity=0.483 Sum_probs=37.4
Q ss_pred eEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecC---------CCCHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 21 KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG---------NVTTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~G---------n~~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
+|++=.-.|+|-.+++.++.+. ..+|.||+.... .+..++....++++.+.+| ||.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lg---Ip~~ 67 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLG---IPLE 67 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHc-CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcC---CCEE
Confidence 5666666889888877766664 579999987421 1223445566777777766 5654
No 60
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.40 E-value=3e+02 Score=21.37 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=31.8
Q ss_pred EEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCC
Q 019503 22 LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPE 86 (340)
Q Consensus 22 viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~ 86 (340)
.++|.+...++....+... +.+++|+|+.... ....+....+.++..+ ++++|..|-..
T Consensus 32 ~~~d~~~~~~~l~~~~~~~---~pd~V~iS~~~~~--~~~~~~~l~~~~k~~~-p~~~iv~GG~~ 90 (121)
T PF02310_consen 32 DILDANVPPEELVEALRAE---RPDVVGISVSMTP--NLPEAKRLARAIKERN-PNIPIVVGGPH 90 (121)
T ss_dssp EEEESSB-HHHHHHHHHHT---TCSEEEEEESSST--HHHHHHHHHHHHHTTC-TTSEEEEEESS
T ss_pred EEECCCCCHHHHHHHHhcC---CCcEEEEEccCcC--cHHHHHHHHHHHHhcC-CCCEEEEECCc
Confidence 4778877666665544443 4578999874432 2222223333333322 57888877544
No 61
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=20.34 E-value=3.1e+02 Score=28.81 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.5
Q ss_pred CccccccccCCHHHHHHHHhc-CCcEEE
Q 019503 179 NPAAEANIYGDPEAADVVFTS-GANIAV 205 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s-~~~i~~ 205 (340)
-|.|.|-.|.|||+|+.++++ +.+-.+
T Consensus 121 IPTA~y~~ft~~e~a~sfi~~~~~~~~V 148 (788)
T KOG0237|consen 121 IPTAKYKTFTDPEEAKSFIQSATDKALV 148 (788)
T ss_pred CCcceeeeeCCHHHHHHHHHhCCCcceE
Confidence 478999999999999999997 434333
No 62
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=20.07 E-value=3.5e+02 Score=23.00 Aligned_cols=58 Identities=9% Similarity=0.348 Sum_probs=35.7
Q ss_pred eEEEecCCCchHHHHHHHHhc---CCCCeEEEEEeecCCCC-HHHHHHHHHHHHHHhCCCCCCcc
Q 019503 21 KLIIDTDPGIDDSMTILMAFQ---TPELEILGLTTIFGNVT-TEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 21 ~viiDtD~G~DD~~AL~~al~---~p~v~v~gIttv~Gn~~-~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
||++=...|.|....+.++.. ...+++.+|+..+|-.. .+.....+.++.+.+| ||..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~g---i~~~ 62 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLN---IPLE 62 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcC---CCEE
Confidence 355666678876655555443 23568888888787542 2345566777777665 5654
Done!