Query 019503
Match_columns 340
No_of_seqs 189 out of 1161
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q8f_A Pyrimidine nucleoside h 100.0 2.5E-81 8.5E-86 594.9 33.3 306 18-339 2-308 (313)
2 3t8j_A Purine nucleosidase, (I 100.0 3.2E-81 1.1E-85 592.6 33.5 308 19-339 1-310 (311)
3 1yoe_A Hypothetical protein YB 100.0 1.2E-80 4.1E-85 592.1 33.4 308 17-339 11-320 (322)
4 2mas_A Inosine-uridine nucleos 100.0 1.4E-80 4.8E-85 590.1 33.3 305 20-339 2-309 (314)
5 3t8i_A Purine nucleosidase, (I 100.0 1.1E-79 3.8E-84 579.9 30.8 304 19-339 1-306 (306)
6 3fz0_A Nucleoside hydrolase, p 100.0 8.4E-79 2.9E-83 584.4 27.6 315 15-339 2-358 (360)
7 2c40_A Inosine-uridine preferr 100.0 2.9E-75 9.8E-80 553.6 22.9 300 19-339 1-309 (312)
8 3epw_A IAG-nucleoside hydrolas 100.0 1.7E-74 6E-79 552.6 16.0 302 18-339 12-337 (338)
9 2yhg_A SDE_182CT, cellulose-bi 99.3 1.7E-11 5.7E-16 119.1 12.9 131 18-171 27-188 (437)
10 2der_A TRNA-specific 2-thiouri 43.7 87 0.003 29.3 8.8 60 18-81 16-82 (380)
11 3bl5_A Queuosine biosynthesis 40.6 59 0.002 27.1 6.6 55 18-74 2-56 (219)
12 2hma_A Probable tRNA (5-methyl 39.1 95 0.0032 29.0 8.2 60 18-81 8-74 (376)
13 2yxb_A Coenzyme B12-dependent 38.2 46 0.0016 27.1 5.2 40 43-84 68-107 (161)
14 1ccw_A Protein (glutamate muta 32.8 30 0.001 27.4 3.1 39 44-84 54-92 (137)
15 1ni5_A Putative cell cycle pro 31.0 1.3E+02 0.0044 28.6 7.8 61 18-82 12-78 (433)
16 3k32_A Uncharacterized protein 26.2 1.3E+02 0.0044 25.1 6.2 54 17-74 4-57 (203)
17 3cpg_A Uncharacterized protein 25.4 1.7E+02 0.006 25.7 7.3 41 18-58 159-209 (282)
18 3sy1_A UPF0001 protein YGGS; e 25.3 2.3E+02 0.0079 24.5 7.9 41 18-58 122-172 (245)
19 2lqo_A Putative glutaredoxin R 24.7 1.2E+02 0.0041 22.1 5.0 41 180-221 30-75 (92)
20 2obn_A Hypothetical protein; s 22.3 2.4E+02 0.0081 26.1 7.6 61 18-81 253-332 (349)
21 1vl2_A Argininosuccinate synth 21.4 2.4E+02 0.0083 26.8 7.7 55 17-75 12-66 (421)
22 3auf_A Glycinamide ribonucleot 20.5 1.2E+02 0.0041 26.3 4.9 56 17-82 20-77 (229)
23 3a2k_A TRNA(Ile)-lysidine synt 20.0 1.2E+02 0.004 29.1 5.2 61 18-82 17-83 (464)
No 1
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=100.00 E-value=2.5e-81 Score=594.87 Aligned_cols=306 Identities=29% Similarity=0.519 Sum_probs=284.6
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE 97 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~ 97 (340)
+++|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+. |+.+||||+|+.+||.++. ..++
T Consensus 2 ~~~~vIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~-g~~dIPV~~Ga~~pl~~~~-~~a~ 79 (313)
T 1q8f_A 2 EKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQK-LEINVPVYAGMPQPIMRQQ-IVAD 79 (313)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHH-TTCCCCEEECCSSCSSSCC-CCCH
T ss_pred CCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCCCHHHHHHHHHHHHHc-CCCCCCEEeCCCccccCCC-CCcc
Confidence 4689999999999999999999999999999999999999999999999999999 9999999999999998754 4567
Q ss_pred cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 98 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 98 ~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
++||.+|||+..+|++...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.++||+||||||++.. ||
T Consensus 80 ~~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-GN 158 (313)
T 1q8f_A 80 NIHGDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-GN 158 (313)
T ss_dssp HHHCTTSSCSCCCCCCCCCCCSSCHHHHHHHHHHHSCSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSSC-CS
T ss_pred ccCCCcCCCCCCCCCCccCCCCCcHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHCHHHHHhCCEEEEECCCCCC-CC
Confidence 79999999999998887777788999999999999999999999999999999999999999999999999999975 99
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (340)
Q Consensus 178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (340)
++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..|
T Consensus 159 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--- 235 (313)
T 1q8f_A 159 FTPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAG--- 235 (313)
T ss_dssp SSSSCCHHHHTCHHHHHHHHTSCSCEEEECHHHHGGGEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSS---
T ss_pred CCchhHHhhccCHHHHHHHHhCCCCEEEeChhhhhcccCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCC---
Confidence 99999999999999999999999999999999999999999999999988889999999999999988876556677
Q ss_pred ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|++++.+|+|+++| .+||+|++|+.+. ++..+|++|+++||.++|+++|.++
T Consensus 236 ---~~lhD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~ 305 (313)
T 1q8f_A 236 ---GPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGV-------LGKPANTKVGITIDTDWFWGLVEEC 305 (313)
T ss_dssp ---EECTTHHHHHHHHCGGGEEEEEECEEECCCSSTTTTCEEECTTCT-------TCCCCCEEEEEEECHHHHHHHHHHH
T ss_pred ---CccchHHHHHHHcCcceeEEEEEEEEEEeCCCCCCCeEEEecccc-------CCCCCCEEEEEecCHHHHHHHHHHH
Confidence 8999999999999999999999999999986 7999999997431 2346799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 306 l~~ 308 (313)
T 1q8f_A 306 VRG 308 (313)
T ss_dssp HHT
T ss_pred HHH
Confidence 864
No 2
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-81 Score=592.61 Aligned_cols=308 Identities=29% Similarity=0.494 Sum_probs=285.4
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 98 (340)
++|||||||+|+||++||+|| .+|++||+|||+|+||++++++++|++++|+.+|+ +||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiDtD~G~DDa~Al~~a-~~p~iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~-~~a~~ 77 (311)
T 3t8j_A 1 MRHFIIDCDTAEDDVLSLYLL-LKNNIDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNY-ITVEK 77 (311)
T ss_dssp CCEEEEEECCSHHHHHHHHHH-HHTTCEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCC-CCCHH
T ss_pred CceEEEECCCChHHHHHHHHH-cCCCCEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCC-ccchh
Confidence 479999999999999999999 78999999999999999999999999999999999 9999999999998864 46778
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCC
Q 019503 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~ 178 (340)
+||.+|||+..+|.+...+.+.+|+++|+++++++|++||||++|||||||+|++++|++.+|||+||||||++..+||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~~~~GN~ 157 (311)
T 3t8j_A 78 VHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNI 157 (311)
T ss_dssp HHCTTSSSSCCCCCSSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEEEECCCTTSCCSS
T ss_pred hcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEEEcCCcccCCCCC
Confidence 99999999999988777777899999999999999999999999999999999999999999999999999999889999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCccc
Q 019503 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFSF 258 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 258 (340)
+|.+|||||+|||||++||+|++|++|+|||+|++..+++++++++++.++++++|+.+++++|.+++.+.++..|
T Consensus 158 tp~aEfN~~~DPeAA~~V~~sg~~i~~v~ldvt~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g---- 233 (311)
T 3t8j_A 158 TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKING---- 233 (311)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHTTSCBCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSS----
T ss_pred CchhhhccccCHHHHHHHHhCCCCEEEecccccccccCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCC----
Confidence 9999999999999999999999999999999998888999999999988889999999999999998777677778
Q ss_pred cccccchHHHHHHHhcCCcee-eEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 259 KSIFLHDPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 259 ~~~~l~D~la~~~~~~P~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|+ +++.+|+||++| .+||+|++|+.+.. ..+.+.+|++|+++||.++|+++|+++
T Consensus 234 --~~lhD~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~~----~~~~~~~n~~v~~~vD~~~f~~~~~~~ 307 (311)
T 3t8j_A 234 --HPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDAD----TSWSDKPNAEIVYEINKKSFMEKIYDL 307 (311)
T ss_dssp --BCCHHHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEEECSCSS----SCSCSSCCEEEEEEECHHHHHHHHHHH
T ss_pred --CcCcCHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEEecCCCc----ccCCCCCCEEEeeccCHHHHHHHHHHH
Confidence 9999999999999999996 688999999996 79999999975310 113456799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 308 l~~ 310 (311)
T 3t8j_A 308 LNW 310 (311)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
No 3
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=100.00 E-value=1.2e-80 Score=592.12 Aligned_cols=308 Identities=31% Similarity=0.509 Sum_probs=278.8
Q ss_pred CCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcc
Q 019503 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVA 96 (340)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~ 96 (340)
...+|||||||+|+||++||+|||++|++||+|||+++||++.+++++|++++|+.+|+.|||||+|+.+||.++. ..+
T Consensus 11 ~~~~~viiD~D~GiDDa~AL~~al~~p~i~l~gIttv~GN~~~~~~~~Na~~ll~~~g~~dIPV~~Ga~~Pl~~~~-~~a 89 (322)
T 1yoe_A 11 GSALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDIPVAGGAVKPLMREL-IIA 89 (322)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCSSSCC-CCC
T ss_pred CCCceEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCCCCEEeCCCccccCCC-ccc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999998754 467
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCC
Q 019503 97 EFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALG 176 (340)
Q Consensus 97 ~~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~G 176 (340)
.++||++|||+..+|+|...+.+.+|+++|+++++++|++||||++|||||||+||+++|++.+|||+||+|||++. .|
T Consensus 90 ~~~HG~~Glg~~~~p~~~~~~~~~~Av~~i~~~l~~~p~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~-~G 168 (322)
T 1yoe_A 90 DNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMG-LG 168 (322)
T ss_dssp -----CCSSCSSCCCCCSSCCCSSCHHHHHHHHHHHCSSCEEEEECSCSHHHHHHHHHCGGGGGGEEEEEEECCCSS-CC
T ss_pred cccCCCCCCCCcCCCCCcCCCCcchHHHHHHHHHHhCCCCEEEEEeccHHHHHHHHHHChHHHhhCCEEEEeCCCCC-CC
Confidence 78999999999999988777778999999999999999999999999999999999999999999999999999985 69
Q ss_pred CCCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHh-hhccCCCCC
Q 019503 177 NVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWH-VKSDGVHGN 255 (340)
Q Consensus 177 n~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 255 (340)
|++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++ .+.++..|
T Consensus 169 N~tp~AEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 247 (322)
T 1yoe_A 169 NWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVG- 247 (322)
T ss_dssp SSSSSCCHHHHHCHHHHHHHHTSSSCEEEECHHHHTTSEECHHHHHHHHHHCSHHHHHHHHHHHHHHC-----CCCCSS-
T ss_pred CCCcccHhhcccCHHHHHHHHhCCCCEEEECccccccccCCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhcccCCCC-
Confidence 9999999999999999999999999999999999999999999999998888999999999999998754 33445567
Q ss_pred ccccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHH
Q 019503 256 FSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIK 334 (340)
Q Consensus 256 ~~~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~ 334 (340)
+++||++|++++++|++|++++.+|+||++| .+||+|++|+... +..++|++|+++||.++|+++|.
T Consensus 248 -----~~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~ 315 (322)
T 1yoe_A 248 -----APLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYL-------TGNKPNATVMVDVDRQGFVDLLA 315 (322)
T ss_dssp -----EECCTHHHHHHHHCGGGEEEEEECEEECCSCSSCTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHH
T ss_pred -----CccccHHHhhheecccceEEEEEEEEEEeCCCCCCceEEEecccc-------CCCCCCeEEEeecCHHHHHHHHH
Confidence 8999999999999999999999999999996 7999999997432 23467999999999999999999
Q ss_pred HHHhc
Q 019503 335 RLLMK 339 (340)
Q Consensus 335 ~~l~~ 339 (340)
++|.+
T Consensus 316 ~~l~~ 320 (322)
T 1yoe_A 316 DRLKF 320 (322)
T ss_dssp HHHGG
T ss_pred HHHHh
Confidence 99864
No 4
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=100.00 E-value=1.4e-80 Score=590.13 Aligned_cols=305 Identities=29% Similarity=0.501 Sum_probs=283.7
Q ss_pred CeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCccccc
Q 019503 20 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA 99 (340)
Q Consensus 20 ~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~ 99 (340)
+|||||||+|+||++||+|||++|++||+|||+++||++++++++|++++|+.+|+.+||||+|+.+||.++. ..++++
T Consensus 2 ~~vIiDtD~GiDDa~AL~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~-~~a~~~ 80 (314)
T 2mas_A 2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI 80 (314)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCCEEeCCCcccCCCC-CCcccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998754 356789
Q ss_pred cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHc-CCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCC
Q 019503 100 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSE-YPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN 177 (340)
Q Consensus 100 hG~dglg~~~~p~~~~~-~~~~~a~~~l~~~~~~-~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn 177 (340)
||.+|||+..+|.+... +.+.+|+++|++++++ +|++||||++|||||||+||+++|++.+|||+||||||++ ..||
T Consensus 81 hG~~Glg~~~~p~~~~~~~~~~~A~~~i~~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN 159 (314)
T 2mas_A 81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGY-HEGN 159 (314)
T ss_dssp HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCS-SCCS
T ss_pred CCCCCCCCCCCCCccccccCCccHHHHHHHHHHhhCCCCEEEEEeccHHHHHHHHHHChhHHhhCCEEEEeCCcc-cCCC
Confidence 99999999989887766 6788999999999999 9999999999999999999999999999999999999999 5799
Q ss_pred CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503 178 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (340)
Q Consensus 178 ~~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (340)
++|.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+++.++|+.+++++|.+++++..+..|
T Consensus 160 ~tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 236 (314)
T 2mas_A 160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAA--- 236 (314)
T ss_dssp SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSS---
T ss_pred CCchhHHHhhcCHHHHHHHHhCCCCEEEeChhhhcccccCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCC---
Confidence 99999999999999999999999999999999999999999999999988889999999999999998876556667
Q ss_pred ccccccchHHHHHHHhcCCceeeEeeeEEEEecC-CcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|++|++++.+|+|+++| .+||+|++|+... ++.++|++|+++||.++|+++|.++
T Consensus 237 ---~~lhD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~-------~~~~~~~~v~~~vD~~~f~~~~~~~ 306 (314)
T 2mas_A 237 ---AAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNP-------RPEHCHTQVAVKLDFEKFWGLVLDA 306 (314)
T ss_dssp ---EECCHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEECCCSS-------CCSSCSEEEEEEECHHHHHHHHHHH
T ss_pred ---CcCCcHHHHHHHcChhheEEEEEeEEEEeCCCCCCceEEEecccc-------CCCCCCEEEEeecCHHHHHHHHHHH
Confidence 8999999999999999999999999999997 5999999996532 1345799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 307 l~~ 309 (314)
T 2mas_A 307 LER 309 (314)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 5
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-79 Score=579.87 Aligned_cols=304 Identities=30% Similarity=0.440 Sum_probs=281.7
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 98 (340)
++|||||||+|+||++||++|+ +++||+|||+++||++.+++++|++++|+.+|+.+||||+|+.+||.++. ..+++
T Consensus 1 M~kvIiD~D~G~DDa~Allla~--~~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~-~~~~~ 77 (306)
T 3t8i_A 1 MRKVIVDSDTATDDTIAILLAS--RFFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQDVPVYLGSQRPILGNW-RTVEE 77 (306)
T ss_dssp CCEEEEEECCSTHHHHHHHHHH--HHSEEEEEEECSSSSCHHHHHHHHHHHHHHTTCTTSCEEECCSSCTTCCC-CCCHH
T ss_pred CcEEEEECCCChHHHHHHHHhC--CCCEEEEEEEccCCCCHHHHHHHHHHHHHhcCCCCCcEEEcCCccCCCCC-ccccc
Confidence 4799999999999999997765 48999999999999999999999999999999999999999999998764 45678
Q ss_pred ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCCCCC
Q 019503 99 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV 178 (340)
Q Consensus 99 ~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~Gn~ 178 (340)
+||++|||+..+|++...+.+.+|+++|+++++++|++|||+++|||||||+|++++|++.+|||+||+|||++ ..||+
T Consensus 78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~-~~GN~ 156 (306)
T 3t8i_A 78 VHGSNGMSNWNYPEPNKRPEKEHAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVKRVKKIWIMGGAF-SKGNT 156 (306)
T ss_dssp HHCTTSSTTCCCCCCSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCGGGGGTCCEEEEECCCS-SCCSS
T ss_pred ccCCCCCCccCCCCccCCcCCccHHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHChhHHhhcCEEEEecCCC-CCCCC
Confidence 99999999999988877777899999999999999999999999999999999999999999999999999997 57999
Q ss_pred CccccccccCCHHHHHHHHhcCCcEEEEeccccccc-ccCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhccCCCCCcc
Q 019503 179 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQV-KLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGNFS 257 (340)
Q Consensus 179 ~~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (340)
+|.+|||||+|||||++||+|++|++|+|||+|+++ .+++++++++++.+++.++|+.+++++|.+|+.+..+..|
T Consensus 157 tp~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g--- 233 (306)
T 3t8i_A 157 TPIAEFNFWVDPEAAKIVLDAGFDITIVPWEVAEISGSLNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISG--- 233 (306)
T ss_dssp SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHHHHSEEEHHHHHHHHHHCCHHHHHHHHHTHHHHHHHHHHHSSSE---
T ss_pred CCchhhccccCHHHHHHHHhCCCCceEecchhccccccCCHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence 999999999999999999999999999999999999 9999999999988899999999999999998777677778
Q ss_pred ccccccchHHHHHHHhcCCce-eeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHH
Q 019503 258 FKSIFLHDPVSFVALVRPDLF-TFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRL 336 (340)
Q Consensus 258 ~~~~~l~D~la~~~~~~P~l~-~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~ 336 (340)
+++||++|++++++|+++ ++++.+|+||++|.+||+|++|+.+. +...+|++|+++||.++|+++|+++
T Consensus 234 ---~~~hD~lava~~l~P~l~~~~~~~~v~Ve~~g~t~G~tv~D~~~~-------~~~~~n~~V~~~vD~~~f~~~~~~~ 303 (306)
T 3t8i_A 234 ---SIHPDSLTVSIAHDNSIILDSSLKYVDVELCSKSRGAMLIDWYSL-------HKNKPNAEIVLKADGGKFKNLLFNS 303 (306)
T ss_dssp ---EECHHHHHHHHHHCGGGEEEEEEECEEECCSGGGTTCEEECTTCC-------SSCCCCEEEEEEECHHHHHHHHHHH
T ss_pred ---CcCCCHHHhhhhccccceeEEEEEEEEEEECCCCCeeEEeccccc-------CCCCCCeEEEeccCHHHHHHHHHHH
Confidence 999999999999999985 57889999999988999999997531 2456799999999999999999999
Q ss_pred Hhc
Q 019503 337 LMK 339 (340)
Q Consensus 337 l~~ 339 (340)
|.+
T Consensus 304 l~~ 306 (306)
T 3t8i_A 304 LSQ 306 (306)
T ss_dssp HHC
T ss_pred hhC
Confidence 863
No 6
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=100.00 E-value=8.4e-79 Score=584.35 Aligned_cols=315 Identities=26% Similarity=0.363 Sum_probs=272.8
Q ss_pred CCCCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCC
Q 019503 15 SSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPR 94 (340)
Q Consensus 15 ~~~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~ 94 (340)
+.|.++|||||||+|+||++||+|||++|++||+|||+++||++++++++|++++|+.+|+ +||||+|+.+||.++ .
T Consensus 2 ~~m~~~kvIiD~D~G~DDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~-dIPV~~Ga~~pl~~~--~ 78 (360)
T 3fz0_A 2 SHMVHRKLIIDTDCGGDDAIAIMLAMTQPDVEVIAITVVWGNVEVNQGMENIGKLLDLYDA-DIPFFRGAEGPLVGE--R 78 (360)
T ss_dssp ---CEEEEEEEECCCHHHHHHHHHHHTSTTEEEEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCCEEECCSSCSSSS--C
T ss_pred CCCCCceEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCCHHHHHHHHHHHHHHcCC-CCCEEEcCCCCCCCC--c
Confidence 4467899999999999999999999999999999999999999999999999999999999 999999999999886 4
Q ss_pred ccccc--cCCCCCCCCCCCCCCC--CCCCccHHHHHHHHHHcC-CCc---EEEEEecchhHHHHHHHhCCchhhcc----
Q 019503 95 VAEFA--HGSDGMGNISLTPPKA--KKCDKNASEFLVDKVSEY-PGE---VSILALGPLTNLALAIKRDSSFASKV---- 162 (340)
Q Consensus 95 ~~~~~--hG~dglg~~~~p~~~~--~~~~~~a~~~l~~~~~~~-p~~---vtila~GPLTNlA~al~~~P~~~~~i---- 162 (340)
.+.++ ||.+|||+..+|.+.. ...+.+|+++|+++++++ |++ ||||++|||||||+||+++|++.++|
T Consensus 79 ~~~~~~~hG~~Glg~~~~p~~~~~~~~~~~~A~~~i~~~~~~~~p~~~~~vtiva~GPLTNlA~al~~~P~~~~~ig~~k 158 (360)
T 3fz0_A 79 ETVQWGGFGSDGFGDAGFPPSQRVALQPKRHAALEILKILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDT 158 (360)
T ss_dssp CSCCCCTTCTTSSCSCCCCCCSHHHHSCCSCHHHHHHHHHHHCCCCSSEEEEEEECSCSHHHHHHHHHCGGGGGGSSCSS
T ss_pred chHHHHhhcccCcCcccCCCCccccccCCccHHHHHHHHHHhcCCCCCceEEEEEecChHHHHHHHHhChHHHhhhcccc
Confidence 56778 9999999998876542 345789999999999999 888 99999999999999999999999999
Q ss_pred -ceEEEecCCCCCCCCCCccccccccCCHHHHHHHHhc-CC--cEEEEecccccccccCHHHHHHHHhcCCh-hh-----
Q 019503 163 -KNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS-GA--NIAVVGINITTQVKLTDADFLELRQSKGR-YV----- 232 (340)
Q Consensus 163 -~~iviMGG~~~~~Gn~~~~aE~N~~~DPeAA~~Vl~s-~~--~i~~v~ldvt~~~~~~~~~~~~l~~~~~~-~~----- 232 (340)
|+||||||++...||++|.+|||||+|||||++||+| |+ |++|+|||+|+++.+++++++++.+.+++ .+
T Consensus 159 v~~iviMGG~~~~~GN~tp~aEfN~~~DPeAA~~V~~s~g~~~~i~~v~ldvt~~~~~t~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T 3fz0_A 159 IPGIVIMNGTSESKGNSNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRESTPNGRVAVN 238 (360)
T ss_dssp SCSEEEECCCSSCCCSSSSSCCHHHHHCHHHHHHHHHCSCCSSCEEEECHHHHHTSCEEHHHHHHHTTC-----------
T ss_pred CcEEEEECCCccCCCCCCCCcccccCcCHHHHHHHHhCcCCCCCeEEECccceeeeecCHHHHHHHHhcCCCcccccccc
Confidence 9999999999888999999999999999999999999 55 99999999999999999999999876555 56
Q ss_pred -----HHHHHHHHHHHHHhhhc-------------cCCCCCccccccccchHHHHHHHhcCCcee-eEeeeEEEEecC-C
Q 019503 233 -----QLLGDMCKFYRDWHVKS-------------DGVHGNFSFKSIFLHDPVSFVALVRPDLFT-FKKGVVRVETQG-I 292 (340)
Q Consensus 233 -----~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~l~D~la~~~~~~P~l~~-~~~~~v~V~~~g-~ 292 (340)
+|+.+++++|.+|++.. .+..+ +++||++|++++++|++|+ .++.+|+||++| .
T Consensus 239 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~g~~~------~~lHD~lava~~l~P~l~~~~~~~~V~Ve~~g~~ 312 (360)
T 3fz0_A 239 QNKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVT------CVVPDAVAVLVAIRPESVLDSFLTYVTVELHGRE 312 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHHC------------------CE------ECCHHHHHHHHHHCGGGEEEEEEECEEECSSCSS
T ss_pred cchHHHHHHHHHHHHHHHHhhhccccccccccccccCcCC------CccccHHHHHHHhChhheeeEEEEEEEEEeCCCC
Confidence 99999999999876532 12233 7899999999999999996 688999999998 6
Q ss_pred cceeEEEecCccccccCCCCCCCCCcEEEEecCHHHHHHHHHHHHhc
Q 019503 293 CMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 339 (340)
Q Consensus 293 ~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~l~~~l~~ 339 (340)
+||+|++|+.+. |.....+...+|++|+++||.++|+++|+++|..
T Consensus 313 trG~Tv~D~~~~-~~~~~~~~~~~n~~V~~~vD~~~f~~~~~~~l~~ 358 (360)
T 3fz0_A 313 TRGATCIDWYGT-EQSMAKKGRWRNCNVITKVDNEMFLKALRDIVEY 358 (360)
T ss_dssp CTTCEEECSSCC-HHHHHHTTCCCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred cceEEEeccccc-cCcccccCCCCCeEEeEecCHHHHHHHHHHHhcc
Confidence 999999997542 1110001223899999999999999999999853
No 7
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=100.00 E-value=2.9e-75 Score=553.58 Aligned_cols=300 Identities=24% Similarity=0.309 Sum_probs=257.1
Q ss_pred CCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccCCCCCCCCCCCcccc
Q 019503 19 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF 98 (340)
Q Consensus 19 ~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga~~pl~~~~~~~~~~ 98 (340)
++|||||||+|+||++||+|||++|++||+|||+++||++++++++|++++|+.+|+.|||||+|+.+||.... ....
T Consensus 1 m~kvIiDtD~GiDDa~Al~~al~~p~i~l~gIt~v~GN~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~--~~~~ 78 (312)
T 2c40_A 1 MKKVYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNSRGKNPFP--KDWR 78 (312)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCCCCSSCCC--HHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEEEecCCCcHHHHHHHHHHHHHHcCCCCCCEecCCCccccCCC--cccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999996421 2233
Q ss_pred ccCC--CCCCCCCCCCC-CCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhCCchhhccceEEEecCCCCCC
Q 019503 99 AHGS--DGMGNISLTPP-KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 175 (340)
Q Consensus 99 ~hG~--dglg~~~~p~~-~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 175 (340)
.||. +|++....|.+ .....+.+|+++|+++++++|++||||++|||||||+||+++|++.+|||+||||||++..+
T Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~i~~~i~~iviMGGa~~~~ 158 (312)
T 2c40_A 79 MHAFYVDALPILNESGKVVTHVAAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRTA 158 (312)
T ss_dssp THHHHHHTCHHHHTTSCCCSCBCSSCHHHHHHHHHHHSSSCEEEEESSCSHHHHHHHHHCGGGGGGEEEEEEECCCCSSC
T ss_pred cccccCCCcccCCCCCcccCCCCCccHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChhHHhhcCEEEEeCCcccCC
Confidence 4554 55543223322 23335689999999999999999999999999999999999999999999999999999888
Q ss_pred CCCC-----ccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhhhc
Q 019503 176 GNVN-----PAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQLLGDMCKFYRDWHVKS 249 (340)
Q Consensus 176 Gn~~-----~~aE~N~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (340)
||++ |.||||||+|||||++||+|++|++|+|||+|+++.+++++++++.+.+ ++.++|+.++++.|..+ ...
T Consensus 159 GN~t~p~~~p~aEfN~~~DPeAA~~V~~s~~~i~~v~ldvt~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (312)
T 2c40_A 159 GNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERKYIGIDFLGQCYAIVPPL-VHF 237 (312)
T ss_dssp CSCCCTTCCSCCCHHHHHCHHHHHHHHHSSCCEEEECGGGGTTCBCCHHHHHHHHHTTTSHHHHHHHHHHHTSCCC----
T ss_pred CCccCCCCCCcchhhhccCHHHHHHHHcCCCCEEEEccccccceecCHHHHHHHHhcCCChHHHHHHHHHHhhhhh-hhh
Confidence 9998 8999999999999999999999999999999999999999999998765 47888887765543100 000
Q ss_pred cCCCCCccccccccchHHHHHHHhcCCceeeEeeeEEEEecCCcceeEEEecCccccccCCCCCCCCCcEEEEecCHHHH
Q 019503 250 DGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKV 329 (340)
Q Consensus 250 ~~~~g~~~~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~~g~~~G~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f 329 (340)
....| +++||++|++++++|++|++++.+|+|+++|.+||+|++|+. +++++|+++||.++|
T Consensus 238 ~~~~~------~~lhD~lava~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d~~------------~~~~~v~~~vD~~~f 299 (312)
T 2c40_A 238 AKNST------YYLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVETDD------------GRPVHVVYDVNHDRF 299 (312)
T ss_dssp -----------CBCHHHHHHHHHHCGGGSEEEEEEEEECCSSTTTTCEEEEEE------------EEEEEEEECCCHHHH
T ss_pred cccCC------CcccCHHHHHHHcCccceeeEEEEEEEEeCCCCCceEEEecC------------CCceEEEeecCHHHH
Confidence 11245 889999999999999999999999999999999999999862 235999999999999
Q ss_pred HHHHHHHHhc
Q 019503 330 LNYIKRLLMK 339 (340)
Q Consensus 330 ~~~l~~~l~~ 339 (340)
+++|.++|.+
T Consensus 300 ~~~~~~~l~~ 309 (312)
T 2c40_A 300 FDYITRLAKK 309 (312)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 8
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=100.00 E-value=1.7e-74 Score=552.58 Aligned_cols=302 Identities=21% Similarity=0.270 Sum_probs=261.2
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCC-CeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCC----CCccccCCCCCCCCC
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPE-LEILGLTTIFGNVTTEDATRNALTLCEMAGCPG----VPVAEGSPEPLKGGK 92 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~-v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~d----IPV~~Ga~~pl~~~~ 92 (340)
..+|||||||+|+||++||+|||++|+ +||+|||||+||++++++++|++++|+.+|+.| ||||+|+.+|+....
T Consensus 12 ~~~~vilD~DpGiDDa~AL~~al~~p~~iel~gITtv~GN~~~~~~~~Nal~lL~~~g~~d~~~~IPV~~Ga~~pl~~~~ 91 (338)
T 3epw_A 12 SAKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFP 91 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHCTTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCSSCCC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCCccceEeCCCCCCCCCC
Confidence 568999999999999999999999999 999999999999999999999999999999988 999999999986521
Q ss_pred CCccccccCCCCCCCCC-CCCC---------CCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHHhC-Cchhhc
Q 019503 93 PRVAEFAHGSDGMGNIS-LTPP---------KAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRD-SSFASK 161 (340)
Q Consensus 93 ~~~~~~~hG~dglg~~~-~p~~---------~~~~~~~~a~~~l~~~~~~~p~~vtila~GPLTNlA~al~~~-P~~~~~ 161 (340)
.....||. ++++.. ++.| ...+.+.+|+++|+++++++|++||||++|||||||+||+++ |++.+|
T Consensus 92 --~~~~~~~~-~~~~~~~~~~~g~~~l~~~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~gP~~~~~ 168 (338)
T 3epw_A 92 --KEWRCLAK-NMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSK 168 (338)
T ss_dssp --HHHHTHHH-HHHTCGGGCCHHHHHHHHHHHHHHHTSBHHHHHHHHHHHCSSCEEEEECSCTHHHHHHHHHHTHHHHTT
T ss_pred --CcceeccC-cCCCCccCCcccccccCCCCCCccCCccHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHcCHHHHHh
Confidence 12234553 232221 2221 222346899999999999999999999999999999999999 999999
Q ss_pred cceEEEecCCCCCCCCCC-----ccccccccCCHHHHHHHHh-cCCcEEEEecccccccccCHHHHHHHHhcC-ChhhHH
Q 019503 162 VKNIVVLGGAFFALGNVN-----PAAEANIYGDPEAADVVFT-SGANIAVVGINITTQVKLTDADFLELRQSK-GRYVQL 234 (340)
Q Consensus 162 i~~iviMGG~~~~~Gn~~-----~~aE~N~~~DPeAA~~Vl~-s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~-~~~~~~ 234 (340)
||+||||||++..+||++ |.+|||||+|||||++||+ |++|++|+|||+|+++.++++++++|.+.+ ++.++|
T Consensus 169 i~~iviMGG~~~~~GN~t~~~~~~~aEfN~~~DPeAA~~V~~~sg~~i~~vpLdvT~~~~~t~~~~~~l~~~~~~~~~~~ 248 (338)
T 3epw_A 169 VEECVIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSIL 248 (338)
T ss_dssp EEEEEEECCCSSSCCSCCCTTSCSCCCHHHHHSHHHHHHHHTCTTCCEEEECHHHHTTCBCCHHHHHGGGGGTTSHHHHH
T ss_pred CCEEEEecCCCCCCCCccccCCCCcchhccccCHHHHHHHHhhcCCCEEEeCcccccCccCCHHHHHHHHhhCCCHHHHH
Confidence 999999999998889998 7999999999999999999 999999999999999999999999998754 588999
Q ss_pred HHHHHHHHHHHhhhccCCCCCccccccccchHHHHHHHhcCCceeeEeeeEEEEe-cCCcceeEEEecCccccccCCCCC
Q 019503 235 LGDMCKFYRDWHVKSDGVHGNFSFKSIFLHDPVSFVALVRPDLFTFKKGVVRVET-QGICMGHTLMDQGLKRWNVSNPWT 313 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~D~la~~~~~~P~l~~~~~~~v~V~~-~g~~~G~tv~d~~~~~~~~~~~~~ 313 (340)
+.+++.+|..+... ....| +++||++|++++++|++|++++.+|+||+ .|.+||+|++|..+
T Consensus 249 ~~~~~~~~~~~~~~-~~~~g------~~lhDplAva~~l~P~l~~~~~~~v~Ve~~~g~t~G~Tv~d~~~---------- 311 (338)
T 3epw_A 249 VGTMWAMCTHCELL-RDGDG------YYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAE---------- 311 (338)
T ss_dssp HHHHHHTTTTHHHH-STTCC------CBCHHHHHHHHHHCGGGCEEEEEEEEECCSSSTTTTCEEECCCT----------
T ss_pred HHHHHHHHHHHHhh-ccCCC------CcCchHHHHHHHcCccceEEEEEEEEEEeCCCCCCceEEEecCC----------
Confidence 98877765433221 23356 89999999999999999999999999999 57999999999642
Q ss_pred CCCCcEEEEecCHHHHHHHHHHHHhc
Q 019503 314 GYSPVSVAWTVNVDKVLNYIKRLLMK 339 (340)
Q Consensus 314 ~~~~~~v~~~vD~~~f~~~l~~~l~~ 339 (340)
..+|++|+++||.++|+++|+++|.+
T Consensus 312 ~~~n~~V~~~vD~~~F~~~~~~~l~~ 337 (338)
T 3epw_A 312 NYPLTFVARNPEAEFFLDMLLRSARA 337 (338)
T ss_dssp TCCEEEEEESCCHHHHHHHHHHHTTC
T ss_pred CCCceEEeeccCHHHHHHHHHHHHhh
Confidence 25689999999999999999999865
No 9
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=99.29 E-value=1.7e-11 Score=119.11 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=91.2
Q ss_pred CCCeEEEecCCC--chHHHHHHHHhcCC-CCeEEEEEeecC----C-CC---HHHHHHHHHHHHHHhCCC--CCCc----
Q 019503 18 NPAKLIIDTDPG--IDDSMTILMAFQTP-ELEILGLTTIFG----N-VT---TEDATRNALTLCEMAGCP--GVPV---- 80 (340)
Q Consensus 18 ~~~~viiDtD~G--~DD~~AL~~al~~p-~v~v~gIttv~G----n-~~---~~~~~~n~~~lL~~~g~~--dIPV---- 80 (340)
.|.||||+||++ +||.++|+.+|.++ +++|.||+.++. + .. .....+.-.+++..++.. ..|.
T Consensus 27 ~k~RviI~TDi~nEpDD~~Slvr~Llysn~~dieGivat~s~~~~~~~~~~~i~~ii~aY~~v~~nL~~h~~~yP~~~~L 106 (437)
T 2yhg_A 27 GRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEGIITTTGCWKKSTSNTAYVDRILNAYSQAYPNLSKHAEGFPTPAYL 106 (437)
T ss_dssp CCCEEEEEECTTSCTHHHHHHHHHHHTGGGSEEEEEEECCBTTBCCCCCCHHHHHHHHHHHHHHHHHTTTSTTCCCHHHH
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHhCcccceEeEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHh
Confidence 578999999975 99999999988865 799999987643 2 22 121112223444444432 3443
Q ss_pred ----cccCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHHhC
Q 019503 81 ----AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKRD 155 (340)
Q Consensus 81 ----~~Ga~~pl~~~~~~~~~~~hG~dglg~~~~p~~~~~~~~~~a~~~l~~~~~~~-p~~vtila~GPLTNlA~al~~~ 155 (340)
..|+... ||.+. ....+.+|.++|++.+++. +.+|.|+|.|.+|+||.||.+.
T Consensus 107 rs~v~~G~~~y----------------gm~~~------g~~~~s~gs~~Ii~~~~~~d~rPL~i~~wGG~n~lAqAL~~~ 164 (437)
T 2yhg_A 107 DSINVMGQRGY----------------GMGDV------GSGKDSAGSNLIIAAVDKDDPRPVWATCWGGCNTIAQAVWKV 164 (437)
T ss_dssp HHTEEECCSSC----------------GGGGC------STTCCCHHHHHHHHHHHSSCSSCEEEEESSCSHHHHHHHHHH
T ss_pred hhhhccCCccc----------------CCCcC------CCCCCChHHHHHHHHHhCCCCCceEEEEecCHhHHHHHHHHh
Confidence 3343221 11111 1123578999999998764 6789999999999999999999
Q ss_pred ---------CchhhccceEEEecCC
Q 019503 156 ---------SSFASKVKNIVVLGGA 171 (340)
Q Consensus 156 ---------P~~~~~i~~iviMGG~ 171 (340)
|+|.+|| +||+.||-
T Consensus 165 ~~~~~~~~~~~i~~kl-rvy~Ig~q 188 (437)
T 2yhg_A 165 QNTRSQAQLDAFISKL-RVYDILGQ 188 (437)
T ss_dssp HHHSCHHHHHHHHHTE-EEEEESCC
T ss_pred hhhcCcchhHHHhhcE-EEEEecCc
Confidence 9999999 68888884
No 10
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=43.73 E-value=87 Score=29.35 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=43.9
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCC-------HHHHHHHHHHHHHHhCCCCCCcc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVT-------TEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~-------~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
...+|++=.=.|.|-++++.++... ..+|.||+...+... ..+..+.++++.+.+| ||.+
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LG---Ip~~ 82 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQQ-GYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLG---IELH 82 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHTT-CCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHc-CCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcC---CcEE
Confidence 4568999999999888877766655 699999998766432 3345677888888877 6654
No 11
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=40.60 E-value=59 Score=27.13 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhC
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g 74 (340)
++.+|++=-=.|+|-.+.+.++.+. ..++.+++..+|.... ...+.+.++.+.+|
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~-~~~v~~~~~~~~~~~~-~e~~~a~~~a~~lg 56 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE-FEEVETVTFHYNQRHS-QEVEVAKSIAEKLG 56 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH-CSEEEEEEEESSCTTC-HHHHHHHHHHHTTC
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc-CCceEEEEEeCCCCCH-HHHHHHHHHHHHhC
Confidence 3568888888999877666665544 3789999988886443 34567777777776
No 12
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=39.07 E-value=95 Score=29.00 Aligned_cols=60 Identities=15% Similarity=0.373 Sum_probs=44.4
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCC-------CHHHHHHHHHHHHHHhCCCCCCcc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNV-------TTEDATRNALTLCEMAGCPGVPVA 81 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~-------~~~~~~~n~~~lL~~~g~~dIPV~ 81 (340)
..+||++=.=.|.|-++++.++... ..+|.||+...|.- ...+..+.++++.+.+| ||.+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~-G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lG---Ip~~ 74 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ-GYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIG---IPYY 74 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHT---CCEE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc-CCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhC---CcEE
Confidence 4568999998999887777666655 68999999877642 23455677888888877 6654
No 13
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=38.19 E-value=46 Score=27.09 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=28.1
Q ss_pred CCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 019503 43 PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGS 84 (340)
Q Consensus 43 p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga 84 (340)
.+.+++|+++..+. .........+.|+..|..++||..|-
T Consensus 68 ~~~diV~lS~~~~~--~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 68 EDVDVIGVSILNGA--HLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp TTCSEEEEEESSSC--HHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred cCCCEEEEEeechh--hHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 46789999887553 34455566666777776689999875
No 14
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=32.76 E-value=30 Score=27.39 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=28.4
Q ss_pred CCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccccC
Q 019503 44 ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGS 84 (340)
Q Consensus 44 ~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~Ga 84 (340)
+.+++++++..+. .........+.|+..|..++||..|-
T Consensus 54 ~~d~v~lS~~~~~--~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 54 KADAILVSSLYGQ--GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp TCSEEEEEECSST--HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCCEEEEEecCcC--cHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 5788999887753 34445666777777787689998874
No 15
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=30.96 E-value=1.3e+02 Score=28.59 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=40.7
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcC-----CCCeEEEEEeecCCC-CHHHHHHHHHHHHHHhCCCCCCccc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQT-----PELEILGLTTIFGNV-TTEDATRNALTLCEMAGCPGVPVAE 82 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~-----p~v~v~gIttv~Gn~-~~~~~~~n~~~lL~~~g~~dIPV~~ 82 (340)
...+|++=.=.|.| .++|+++|.. ..+++.++++.+|-. ..+.-.+.+..+.+.+| ||.+.
T Consensus 12 ~~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lg---i~~~v 78 (433)
T 1ni5_A 12 TSRQILVAFSGGLD-STVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ---VPLVV 78 (433)
T ss_dssp TCSEEEEECCSBHH-HHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTT---CCEEE
T ss_pred CCCEEEEEEcchHH-HHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcC---CcEEE
Confidence 34678888888885 5555555542 678999999888854 23444556666666655 67654
No 16
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=26.18 E-value=1.3e+02 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=37.9
Q ss_pred CCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhC
Q 019503 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAG 74 (340)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g 74 (340)
|...||++=.=.|+|-.+++.++.+ ...++.+++..+|... ....+.++.+.+|
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~-~g~~v~~~~v~~~~~~---~~~~~~~~a~~lg 57 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK-LGYNPHLITINFGVIP---SYKLAEETAKILG 57 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH-TTEEEEEEEEECSSSC---TTHHHHHHHHHHT
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH-cCCCeEEEEEeCCCch---HHHHHHHHHHHhC
Confidence 3456899988899977665555444 4588999998888654 3356777777777
No 17
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=25.38 E-value=1.7e+02 Score=25.70 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCc---------hHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPGI---------DDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G~---------DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|..|+|. +|+.+++-.+. .|.+++.||-|-.|...
T Consensus 159 ~~~~V~lkVdtGme~~R~G~~~ee~~~l~~~i~~~~~l~l~Gl~th~~~~~ 209 (282)
T 3cpg_A 159 ITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAHVH 209 (282)
T ss_dssp CCEEEEEEBCCSSCTTSSSBCGGGHHHHHHHHHTCTTEEEEEEECCCCCSS
T ss_pred CCceEEEEEECCCCCCCCCcCHHHHHHHHHHHHhCCCceEEeEEEECCCCC
Confidence 3468999988863 67777766554 68999999999888765
No 18
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=25.32 E-value=2.3e+02 Score=24.55 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCCeEEEecCCC---------chHHHHHHHHhc-CCCCeEEEEEeecCCCC
Q 019503 18 NPAKLIIDTDPG---------IDDSMTILMAFQ-TPELEILGLTTIFGNVT 58 (340)
Q Consensus 18 ~~~~viiDtD~G---------~DD~~AL~~al~-~p~v~v~gIttv~Gn~~ 58 (340)
.+.+|+|-.|+| .+|+.+++-.+. .|.+++.|+-|......
T Consensus 122 ~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~~~~~l~l~Glmt~~~~~~ 172 (245)
T 3sy1_A 122 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPES 172 (245)
T ss_dssp CCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHTTCTTEEEEEEECCCCCCS
T ss_pred CCceEEEEEECCCCcCCcCCCHHHHHHHHHHHHcCCCCeEEEEEEeCCCCC
Confidence 456888666664 477887776554 68999999987766543
No 19
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=24.66 E-value=1.2e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=28.0
Q ss_pred ccccccccCCHHHHHHHHhc-----CCcEEEEecccccccccCHHHH
Q 019503 180 PAAEANIYGDPEAADVVFTS-----GANIAVVGINITTQVKLTDADF 221 (340)
Q Consensus 180 ~~aE~N~~~DPeAA~~Vl~s-----~~~i~~v~ldvt~~~~~~~~~~ 221 (340)
+..|.|+..||+|.+.+.+. .+|.++++ |=+.-..++.+++
T Consensus 30 ~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~-Dg~~l~~~~~~el 75 (92)
T 2lqo_A 30 AYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFA-DGSTLTNPSADEV 75 (92)
T ss_dssp CCEEEETTTCHHHHHHHHHHSSSSSCSCEEEET-TSCEEESCCHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEe-CCEEEeCCCHHHH
Confidence 56799999999999999862 37888775 3222233455554
No 20
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=22.27 E-value=2.4e+02 Score=26.14 Aligned_cols=61 Identities=11% Similarity=0.254 Sum_probs=43.2
Q ss_pred CCCeEEEecCCC---c-----------hHHHHHHHHhc---C--CCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCC
Q 019503 18 NPAKLIIDTDPG---I-----------DDSMTILMAFQ---T--PELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 78 (340)
Q Consensus 18 ~~~~viiDtD~G---~-----------DD~~AL~~al~---~--p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dI 78 (340)
.+..||+=.++| + .+...+..+++ + +.++|+||+...-+.+.+....|...+-+.+| +
T Consensus 253 ~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~g---l 329 (349)
T 2obn_A 253 QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTIAETG---L 329 (349)
T ss_dssp CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHHHHHC---S
T ss_pred CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHC---C
Confidence 456688888875 3 55566665554 3 78999999987766666666677777778776 6
Q ss_pred Ccc
Q 019503 79 PVA 81 (340)
Q Consensus 79 PV~ 81 (340)
||.
T Consensus 330 Pv~ 332 (349)
T 2obn_A 330 PCT 332 (349)
T ss_dssp CEE
T ss_pred CEE
Confidence 653
No 21
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=21.35 E-value=2.4e+02 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=41.0
Q ss_pred CCCCeEEEecCCCchHHHHHHHHhcCCCCeEEEEEeecCCCCHHHHHHHHHHHHHHhCC
Q 019503 17 TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGC 75 (340)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~al~~p~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~ 75 (340)
-.+.||++=-=.|+|-.+++.+|... ..+|.|+|...|.. .-.+.++++.+.+|.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~-G~eViavt~d~Gq~---~Ele~A~~vA~~lGi 66 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK-GFDVIAYVANVGQK---DDFVAIKEKALKTGA 66 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEEEESSCC---CCHHHHHHHHHHHTC
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC-CCeEEEEEEEcCCH---HHHHHHHHHHHHcCC
Confidence 46788999888999999988888776 78999999988863 123456666666674
No 22
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.49 E-value=1.2e+02 Score=26.26 Aligned_cols=56 Identities=11% Similarity=-0.056 Sum_probs=33.9
Q ss_pred CCCCeEEEecCCCchHHHHHHHHhcCC--CCeEEEEEeecCCCCHHHHHHHHHHHHHHhCCCCCCccc
Q 019503 17 TNPAKLIIDTDPGIDDSMTILMAFQTP--ELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAE 82 (340)
Q Consensus 17 ~~~~~viiDtD~G~DD~~AL~~al~~p--~v~v~gIttv~Gn~~~~~~~~n~~~lL~~~g~~dIPV~~ 82 (340)
..++||.|=.-....-+.+++-++... ..+|.+|.|-.-+. ..++.+.+..||++.
T Consensus 20 ~~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~----------~~~~~A~~~gIp~~~ 77 (229)
T 3auf_A 20 GHMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADA----------YGLERARRAGVDALH 77 (229)
T ss_dssp TTCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTC----------HHHHHHHHTTCEEEE
T ss_pred CCCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCch----------HHHHHHHHcCCCEEE
Confidence 345677776444345677888888766 46899988742221 124444445699863
No 23
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=20.02 E-value=1.2e+02 Score=29.14 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCCeEEEecCCCchHHHHHHHHhcC----CCCeEEEEEeecCCCC--HHHHHHHHHHHHHHhCCCCCCccc
Q 019503 18 NPAKLIIDTDPGIDDSMTILMAFQT----PELEILGLTTIFGNVT--TEDATRNALTLCEMAGCPGVPVAE 82 (340)
Q Consensus 18 ~~~~viiDtD~G~DD~~AL~~al~~----p~v~v~gIttv~Gn~~--~~~~~~n~~~lL~~~g~~dIPV~~ 82 (340)
...+|++=.-.|.| .++|+++|.. ..+++.+++..+|-.. .+.-...+.++.+.+| ||.+.
T Consensus 17 ~~~~vlVa~SGG~D-S~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg---i~~~v 83 (464)
T 3a2k_A 17 EGAAVIVGVSGGPD-SLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR---ILCET 83 (464)
T ss_dssp CSSBEEEECCSSHH-HHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT---CEEEE
T ss_pred CCCEEEEEEcCcHH-HHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcC---CcEEE
Confidence 45679998888995 4555555442 5689999998888642 2334455666666655 66553
Done!