BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019504
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/299 (50%), Positives = 197/299 (65%), Gaps = 15/299 (5%)
Query: 15 QLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKGHIVTNF 74
+L +E +LF++NT SVV I ++ +R ++E+P+G+GSG VWD +GHIVTN+
Sbjct: 11 KLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQGHIVTNY 70
Query: 75 HVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVLKIEASEDLLKPI 134
HVI A + + + +D Q F+ K+VG D+ KD+AVL+I+A ++ L+PI
Sbjct: 71 HVIRGA-----------SDLRVTLAD--QTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPI 117
Query: 135 NVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA-GVTIGGGIQTDAAINP 193
VG S+ L VGQ+ AIGNPFG DHTLT GVISGL R+I S A G I IQTDAAINP
Sbjct: 118 PVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINP 177
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQLIQYGKVVRAGLNV 253
GNSGGPLLDS G LIGINTAI + +G S+GVGF+IP TV IV QL+++GKV R L +
Sbjct: 178 GNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGI 237
Query: 254 DIAPDLVASQLNVGNGALVLQVPGNSLAAKAGILPTTRGFAGNIILGDIIVAVNNKPVS 312
APD QL V +G LVL P + A KAG+ T R G ++LGDII +VN VS
Sbjct: 238 KFAPDQSVEQLGV-SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS 295
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K+VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKMVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I + S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNL-TAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GNSGG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q+++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 154/264 (58%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K+VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKMVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I + S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNL-TAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GNSGG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q+++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 154/264 (58%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K+VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKMVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I + S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNL-TAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GN+GG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q+++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 154/264 (58%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K+VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKMVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I + S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNL-TAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GN+GG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q+++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 154/264 (58%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K+VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKMVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I + S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNL-TAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GN+GG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q+++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 151/264 (57%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKXVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNLT-AIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GNSGG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q ++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQXVEYGQVKRGELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 158/280 (56%), Gaps = 37/280 (13%)
Query: 56 EGNGSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
EG GSGV+ + KG+++TN HVI A +++I +DG + F+ KL+G+D
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQA-----------QKISIQLNDG--REFDAKLIGSD 108
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIF 174
D+A+L+I+ L + I + S L+VG +A+GNPFG T T G++S L R
Sbjct: 109 DQSDIALLQIQNPSKLTQ-IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGL 167
Query: 175 SQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVL 234
+ G+ IQTDA+IN GNSGG LL+ G LIGINTAI+ G S G+GFAIPS+
Sbjct: 168 NLEGLE--NFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR 225
Query: 235 KIVPQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTT 290
+ QLI +G++ R L + +++ D+ A L+V GA V +V S +AKAG+
Sbjct: 226 TLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-- 283
Query: 291 RGFAGNIILGDIIVAVNNKPV-SFSCLSIPSRIYLICAEP 329
GDII ++N KP+ SF+ L R + EP
Sbjct: 284 ---------GDIITSLNGKPLNSFAEL----RSRIATTEP 310
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 151/264 (57%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKXVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNLT-AIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GN+GG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q ++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQXVEYGQVKRGELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 158/280 (56%), Gaps = 37/280 (13%)
Query: 56 EGNGSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
EG GSGV+ + KG+++TN HVI A +++I +DG + F+ KL+G+D
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQA-----------QKISIQLNDG--REFDAKLIGSD 108
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIF 174
D+A+L+I+ L + I + S L+VG +A+GNPFG T T G++S L R
Sbjct: 109 DQSDIALLQIQNPSKLTQ-IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGL 167
Query: 175 SQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVL 234
+ G+ IQTDA+IN GN+GG LL+ G LIGINTAI+ G S G+GFAIPS+
Sbjct: 168 NLEGLE--NFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR 225
Query: 235 KIVPQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTT 290
+ QLI +G++ R L + +++ D+ A L+V GA V +V S +AKAG+
Sbjct: 226 TLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-- 283
Query: 291 RGFAGNIILGDIIVAVNNKPV-SFSCLSIPSRIYLICAEP 329
GDII ++N KP+ SF+ L R + EP
Sbjct: 284 ---------GDIITSLNGKPLNSFAEL----RSRIATTEP 310
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 151/264 (57%), Gaps = 33/264 (12%)
Query: 59 GSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSGV+ D KG++VTN HV+ +A V +V + SDG + F+ K VG D
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNA---------TVIKVQL--SDG--RKFDAKXVGKDPRS 134
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
D+A+++I+ ++L I S L+VG +AIGNPFG T+T G++S L R +
Sbjct: 135 DIALIQIQNPKNLT-AIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE 193
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
IQTDAAIN GN+GG L++ G LIGINTAI+ G + G+GFAIPS+ V +
Sbjct: 194 NYE--NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLT 251
Query: 238 PQLIQYGKVVRAGLNV---DIAPDLV-ASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
Q ++YG+V R L + ++ +L A +++ GA V QV NS AAKAGI
Sbjct: 252 SQXVEYGQVKRGELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA----- 306
Query: 294 AGNIILGDIIVAVNNKPV-SFSCL 316
GD+I ++N KP+ SF+ L
Sbjct: 307 ------GDVITSLNGKPISSFAAL 324
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 119/196 (60%), Gaps = 15/196 (7%)
Query: 59 GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKD 118
GSG ++D +G+I+TN+HV+G A + + DG + ++ + +G D D
Sbjct: 58 GSGFIFDPEGYILTNYHVVGGA-----------DNITVTMLDGSK--YDAEYIGGDEELD 104
Query: 119 LAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAG 178
+AV+KI+AS+ + G S +K+G+ +AIGNP GF HT+TVGV+S NR I G
Sbjct: 105 IAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDG 164
Query: 179 VTIGGG-IQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
G IQTDAAINPGNSGGPLL+ G +IGINTAI+ + +GFAIP +TV K +
Sbjct: 165 SGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQ-EAVNLGFAIPINTVKKFL 223
Query: 238 PQLIQYGKVVRAGLNV 253
++ KV +A L V
Sbjct: 224 DTILTQKKVEKAYLGV 239
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 156/295 (52%), Gaps = 47/295 (15%)
Query: 56 EGNGSGVVWD-GKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
E GSGV+ D G I+TN HVI +A + + + DG + + +L+G D
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNA-----------SLITVTLQDG--RRLKARLIGGD 122
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFD-----HTLTVGVISGL 169
DLAVLKI+A LK + +G S L+VG +AIGNPFG + + T G++S L
Sbjct: 123 SETDLAVLKIDAKN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 170 NRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIP 229
R + GV IQTDAAINPGNSGG L+++KG LIGINTAI++ G + G+GFAIP
Sbjct: 181 KRSDLNIEGVE--NFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIP 238
Query: 230 SSTVLKIVPQLIQYGKVVRAGLNV---DIAPDLVASQLNVGN--GALVLQVPGNSLAAKA 284
+ V + Q+I++G + R + + + P+L + + GALV QV NS A A
Sbjct: 239 INMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELA 298
Query: 285 GILPTTRGFAGNIILGDIIVAVNNKPV--------SFSCLSIPSRIYLICAEPNQ 331
G+ GDII +N+ + + S L + S + +I N+
Sbjct: 299 GLK-----------AGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 156/295 (52%), Gaps = 47/295 (15%)
Query: 56 EGNGSGVVWD-GKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
E GSGV+ D G I+TN HVI +A + + + DG + + +L+G D
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNA-----------SLITVTLQDG--RRLKARLIGGD 122
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFD-----HTLTVGVISGL 169
DLAVLKI+A LK + +G S L+VG +AIGNPFG + + T G++S L
Sbjct: 123 SETDLAVLKIDAKN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 170 NRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIP 229
R + GV IQTDAAINPGNSGG L+++KG LIGINTAI++ G + G+GFAIP
Sbjct: 181 KRSDLNIEGVE--NFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIP 238
Query: 230 SSTVLKIVPQLIQYGKVVRAGLNV---DIAPDLVASQLNVGN--GALVLQVPGNSLAAKA 284
+ V + Q+I++G + R + + + P+L + + GALV QV NS A A
Sbjct: 239 INMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELA 298
Query: 285 GILPTTRGFAGNIILGDIIVAVNNKPV--------SFSCLSIPSRIYLICAEPNQ 331
G+ GDII +N+ + + S L + S + +I N+
Sbjct: 299 GLK-----------AGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 156/295 (52%), Gaps = 47/295 (15%)
Query: 56 EGNGSGVVWD-GKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
E GSGV+ D G I+TN HVI +A + + + DG + + +L+G D
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNA-----------SLITVTLQDG--RRLKARLIGGD 122
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFD-----HTLTVGVISGL 169
DLAVLKI+A LK + +G S L+VG +AIGNPFG + + T G++S L
Sbjct: 123 SETDLAVLKIDAKN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 170 NRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIP 229
R + GV IQTDAAINPGN+GG L+++KG LIGINTAI++ G + G+GFAIP
Sbjct: 181 KRSDLNIEGVE--NFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIP 238
Query: 230 SSTVLKIVPQLIQYGKVVRAGLNV---DIAPDLVASQLNVGN--GALVLQVPGNSLAAKA 284
+ V + Q+I++G + R + + + P+L + + GALV QV NS A A
Sbjct: 239 INMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELA 298
Query: 285 GILPTTRGFAGNIILGDIIVAVNNKPV--------SFSCLSIPSRIYLICAEPNQ 331
G+ GDII +N+ + + S L + S + +I N+
Sbjct: 299 GLK-----------AGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 123/212 (58%), Gaps = 16/212 (7%)
Query: 58 NGSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAK 117
GSG++ +G I+TN HVI +A KP G + + SDG F +VGAD
Sbjct: 32 EGSGIILSAEGLILTNNHVIAAAA--KPPLGSPPPKTTVTFSDGRTAPF--TVVGADPTS 87
Query: 118 DLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFS-- 175
D+AV++++ L PI++G SS L+VGQ LAIG+P G + T+T G++S LNR + +
Sbjct: 88 DIAVVRVQGVSGL-TPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTG 146
Query: 176 QAG--VTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSA-------GVGF 226
+AG T+ IQTDAAINPGNSGG L++ L+G+N+AI T SA G+GF
Sbjct: 147 EAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGF 206
Query: 227 AIPSSTVLKIVPQLIQYGKVVRAGLNVDIAPD 258
AIP +I +LI GK A L V + D
Sbjct: 207 AIPVDQAKRIADELISTGKASHASLGVQVTND 238
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 154/295 (52%), Gaps = 47/295 (15%)
Query: 56 EGNGSGVVWD-GKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
E GSGV+ D G I+TN HVI +A + + + DG + + +L+G D
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNA-----------SLITVTLQDG--RRLKARLIGGD 122
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFD-----HTLTVGVISGL 169
DLAVLKI+A LK + +G S L+VG +AIGNPFG + + T G++S L
Sbjct: 123 SETDLAVLKIDAKN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSAL 180
Query: 170 NRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIP 229
R + GV IQTDAAI GNSGG L+++KG LIGINTAI++ G + G+GFAIP
Sbjct: 181 KRSDLNIEGVE--NFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIP 238
Query: 230 SSTVLKIVPQLIQYGKVVRAGLNV---DIAPDLVASQLNVGN--GALVLQVPGNSLAAKA 284
+ V + Q+I++G + R + + + P+L + + GALV QV NS A A
Sbjct: 239 INMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELA 298
Query: 285 GILPTTRGFAGNIILGDIIVAVNNKPV--------SFSCLSIPSRIYLICAEPNQ 331
G+ GDII +N+ + + S L + S + +I N+
Sbjct: 299 GLK-----------AGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 17/194 (8%)
Query: 56 EGNGSGVVWDG-KGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGAD 114
EG GSGV+ + KG+++TN HVI A +++I +DG + F+ KL+G+D
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQA-----------QKISIQLNDG--REFDAKLIGSD 108
Query: 115 RAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIF 174
D+A+L+I+ L + I + S L+VG +A+GNPFG T T G++S L R
Sbjct: 109 DQSDIALLQIQNPSKLTQ-IAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGL 167
Query: 175 SQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVL 234
+ G+ IQTDA+IN GNSGG LL+ G LIGINTAI+ G S G+GFAIPS+
Sbjct: 168 NLEGLE--NFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMAR 225
Query: 235 KIVPQLIQYGKVVR 248
+ QLI +G+++
Sbjct: 226 TLAQQLIDFGEILE 239
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 169/332 (50%), Gaps = 42/332 (12%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN +G LAIGNP+ T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINA--RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+INPGN GG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVRAGLNV---DIAP-DLVASQLNVGNGALVLQVPGNSLAAKAGILPTTRGF 293
+LI+ G+V+R + + +IAP ++ G +V +V + AA AGI
Sbjct: 231 DKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQ------ 284
Query: 294 AGNIILGDIIVAVNNKPVSFSCLSIPSRIYLI 325
+ D+I++V+NKP + S L +++ I
Sbjct: 285 -----VNDLIISVDNKP-AISALETMAQVAEI 310
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 139/260 (53%), Gaps = 36/260 (13%)
Query: 59 GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKD 118
GSGV+ D +G+I+TN HVI A Q++ + DG + FE LVG+D D
Sbjct: 39 GSGVIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTD 85
Query: 119 LAVLKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
LAVLKI A+ L PIN +G LAIGNP+ T+T G+IS R +
Sbjct: 86 LAVLKINATGGLPTIPINA--RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPT 143
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVL 234
G +QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP
Sbjct: 144 GRQ--NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLAT 201
Query: 235 KIVPQLIQYGKVVRAGLNV---DIAP-DLVASQLNVGNGALVLQVPGNSLAAKAGILPTT 290
KI+ +LI+ G+V+R + + +IAP ++ G +V +V + AA AGI
Sbjct: 202 KIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQ--- 258
Query: 291 RGFAGNIILGDIIVAVNNKP 310
+ D+I++V+NKP
Sbjct: 259 --------VNDLIISVDNKP 270
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+INPGNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP+ +T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQVITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+INPGNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPANLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+INPGNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 143/275 (52%), Gaps = 37/275 (13%)
Query: 59 GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKD 118
GSGV+ D +G+I+TN HVI A Q++ + DG + FE LVG+D D
Sbjct: 39 GSGVIXDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTD 85
Query: 119 LAVLKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
LAVLKI A+ L PIN +G LAIGNP+ T+T G+IS R +
Sbjct: 86 LAVLKINATGGLPTIPINA--RRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPT 143
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVL 234
G +QTDA+IN GNSGG L++S G L GINT ++ T G+GFAIP
Sbjct: 144 GRQ--NFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLAT 201
Query: 235 KIVPQLIQYGKVVRAGLNV---DIAP-DLVASQLNVGNGALVLQVPGNSLAAKAGILPTT 290
KI +LI+ G+V+R + + +IAP ++ G +V +V + AA AGI
Sbjct: 202 KIXDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQ--- 258
Query: 291 RGFAGNIILGDIIVAVNNKPVSFSCLSIPSRIYLI 325
+ D+I++V+NKP + S L ++ I
Sbjct: 259 --------VNDLIISVDNKP-AISALETXDQVAEI 284
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 140/260 (53%), Gaps = 36/260 (13%)
Query: 59 GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKD 118
GSGV+ D +G+I+TN HVI A Q++ + DG + FE LVG+D D
Sbjct: 44 GSGVIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTD 90
Query: 119 LAVLKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
LAVL I+A+ L PIN + +G LAIGNP+ T+T G+IS R +
Sbjct: 91 LAVLIIKATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPT 148
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVL 234
G +QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP
Sbjct: 149 GRQ--NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLAT 206
Query: 235 KIVPQLIQYGKVVRAGLNV---DIAP-DLVASQLNVGNGALVLQVPGNSLAAKAGILPTT 290
KI+ +LI+ G+V+R + + +IAP ++ G +V +V + AA AGI
Sbjct: 207 KIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQ--- 263
Query: 291 RGFAGNIILGDIIVAVNNKP 310
+ D+I++V+NKP
Sbjct: 264 --------VNDLIISVDNKP 275
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 3 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 57
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 58 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 104
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 105 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ 162
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 163 --NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 220
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 221 DKLIRDGRVIR 231
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 132/250 (52%), Gaps = 26/250 (10%)
Query: 3 LKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGV 62
L ++ P F S P +A + +VVN+++ L N +EI GSGV
Sbjct: 16 LNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSGV 70
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAVL
Sbjct: 71 IMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAVL 117
Query: 123 KIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTI 181
KI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 118 KINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ- 174
Query: 182 GGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIVP 238
+QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 175 -NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMD 233
Query: 239 QLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 234 KLIRDGRVIR 243
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 132/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+IN GN GG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 135/259 (52%), Gaps = 42/259 (16%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVIS-----GLN---RD 172
LKI A+ L PIN + +G LAIGNP+ T+T G+IS GLN R
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGAIGLNPTGRQ 172
Query: 173 IFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIP 229
F +QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP
Sbjct: 173 NF----------LQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIP 222
Query: 230 SSTVLKIVPQLIQYGKVVR 248
KI+ +LI+ G+V+R
Sbjct: 223 FQLATKIMDKLIRDGRVIR 241
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 131/250 (52%), Gaps = 26/250 (10%)
Query: 3 LKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGV 62
L ++ P F S P +A + +VVN+++ L N +EI GSGV
Sbjct: 16 LNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSGV 70
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAVL
Sbjct: 71 IMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAVL 117
Query: 123 KIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTI 181
KI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 118 KINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ- 174
Query: 182 GGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIVP 238
+QTDA+IN GN GG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 175 -NFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMD 233
Query: 239 QLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 234 KLIRDGRVIR 243
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 132/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPANLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 134/258 (51%), Gaps = 42/258 (16%)
Query: 3 LKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGV 62
L ++ P F S P +A + +VVN+++ L N +EI GSGV
Sbjct: 16 LNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSGV 70
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAVL
Sbjct: 71 IMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAVL 117
Query: 123 KIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVIS-----GLN---RDI 173
KI A+ L PIN + +G LAIGNP+ T+T G+IS GLN R
Sbjct: 118 KINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGAIGLNPTGRQN 175
Query: 174 FSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPS 230
F +QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP
Sbjct: 176 F----------LQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPF 225
Query: 231 STVLKIVPQLIQYGKVVR 248
KI+ +LI+ G+V+R
Sbjct: 226 QLATKIMDKLIRDGRVIR 243
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 132/251 (52%), Gaps = 26/251 (10%)
Query: 2 TLKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSG 61
+L ++ P F S P +A + +VVN+++ L N +EI GSG
Sbjct: 13 SLNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSG 67
Query: 62 VVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
V+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAV
Sbjct: 68 VIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAV 114
Query: 122 LKIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVT 180
LKI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 115 LKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ 172
Query: 181 IGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIV 237
+ TDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 173 --NFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIM 230
Query: 238 PQLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 231 DKLIRDGRVIR 241
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 3 LKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGV 62
L ++ P F S P +A + +VVN+++ L N +EI GSGV
Sbjct: 16 LNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSGV 70
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAVL
Sbjct: 71 IXDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAVL 117
Query: 123 KIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTI 181
KI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 118 KINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ- 174
Query: 182 GGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIVP 238
+QTDA+IN GNSGG L++S G L GINT ++ T G+GFAIP KI
Sbjct: 175 -NFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXD 233
Query: 239 QLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 234 KLIRDGRVIR 243
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 131/250 (52%), Gaps = 26/250 (10%)
Query: 3 LKEVTPPVFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGV 62
L ++ P F S P +A + +VVN+++ L N +EI GSGV
Sbjct: 16 LNPLSTPQFDSTDETPASYNLA--VRRAAPAVVNVYNRGL--NTNSHNQLEI-RTLGSGV 70
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
+ D +G+I+TN HVI A Q++ + DG + FE LVG+D DLAVL
Sbjct: 71 IMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTDLAVL 117
Query: 123 KIEASEDLLK-PINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTI 181
KI A+ L PIN + +G LAIGNP+ T+T G+IS R + G
Sbjct: 118 KINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQ- 174
Query: 182 GGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVLKIVP 238
+ TDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP KI+
Sbjct: 175 -NFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMD 233
Query: 239 QLIQYGKVVR 248
+LI+ G+V+R
Sbjct: 234 KLIRDGRVIR 243
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 59 GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKD 118
GSGV+ D +G+I+TN HVI A Q++ + DG + FE LVG+D D
Sbjct: 39 GSGVIMDQRGYIITNKHVINDA-------DQII----VALQDG--RVFEALLVGSDSLTD 85
Query: 119 LAVLKIEASEDL-LKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQA 177
LAVLKI A+ L PIN + +G LAIGNP+ T+T G+IS R +
Sbjct: 86 LAVLKINATGGLPTIPINARRVP--HIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPT 143
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTG---TSAGVGFAIPSSTVL 234
G +QTDA+IN GNSGG L++S G L+GINT ++ T G+GFAIP
Sbjct: 144 GRQ--NFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLAT 201
Query: 235 KIVPQLIQYG 244
KI+ +LI+ G
Sbjct: 202 KIMDKLIRDG 211
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 150/324 (46%), Gaps = 65/324 (20%)
Query: 14 GQLLPNEER-----IAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKG 68
GQ PN R IA + EK +VV+I P E+P +GSG + G
Sbjct: 2 GQEDPNSLRHKYNFIADVVEKIAPAVVHIELFRKLPF----SKREVPVASGSGFIVSEDG 57
Query: 69 HIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVLKIEASE 128
IVTN HV+ + RV + +G +E K+ D D+A++KI+ +
Sbjct: 58 LIVTNAHVVTNK-----------HRVKVELKNGA--TYEAKIKDVDEKADIALIKID-HQ 103
Query: 129 DLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTIG------ 182
L + +G+SS L+ G+ +AIG+PF +T+T G++S R G +G
Sbjct: 104 GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR-----GGKELGLRNSDM 158
Query: 183 GGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQ--- 239
IQTDA IN GNSGGPL++ G +IGINT +T AG+ FAIPS + K + +
Sbjct: 159 DYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-----AGISFAIPSDKIKKFLTESHD 213
Query: 240 ---------LIQYGKVVRAGLNVDIAPDLVASQL---NVGNGALVLQVPGNSLAAKAGIL 287
+Y + L A +L +V +GA +++V +
Sbjct: 214 RQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEV-----------I 262
Query: 288 PTTRGFAGNIILGDIIVAVNNKPV 311
P T AG + D+I+++N + V
Sbjct: 263 PDTPAEAGGLKENDVIISINGQSV 286
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 39/237 (16%)
Query: 14 GQLLPNEER-----IAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKG 68
GQ PN R IA + EK +VV+I P E+P +GSG + G
Sbjct: 2 GQEDPNSLRHKYNFIADVVEKIAPAVVHIELFRKLPF----SKREVPVASGSGFIVSEDG 57
Query: 69 HIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVLKIEASE 128
IVTN HV+ + RV + +G +E K+ D D+A++KI+ +
Sbjct: 58 LIVTNAHVVTNK-----------HRVKVELKNGA--TYEAKIKDVDEKADIALIKID-HQ 103
Query: 129 DLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTIG------ 182
L + +G+SS L+ G+ +AIG+PF +T+T G++S R G +G
Sbjct: 104 GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR-----GGKELGLRNSDM 158
Query: 183 GGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQ 239
IQTDA IN GNSGGPL++ G +IGINT +T AG+ FAIPS + K + +
Sbjct: 159 DYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-----AGISFAIPSDKIKKFLTE 210
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 150/324 (46%), Gaps = 65/324 (20%)
Query: 14 GQLLPNEER-----IAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKG 68
GQ PN R IA + EK +VV+I P E+P +GSG + G
Sbjct: 2 GQEDPNSLRHKYNFIADVVEKIAPAVVHIELFRKLPF----SKREVPVASGSGFIVSEDG 57
Query: 69 HIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVLKIEASE 128
IVTN HV+ + RV + +G +E K+ D D+A++KI+ +
Sbjct: 58 LIVTNAHVVTNK-----------HRVKVELKNGA--TYEAKIKDVDEKADIALIKID-HQ 103
Query: 129 DLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQAGVTIG------ 182
L + +G+SS L+ G+ +AIG+PF +T+T G++S R G +G
Sbjct: 104 GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR-----GGKELGLRNSDM 158
Query: 183 GGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQ--- 239
IQTDA IN GN+GGPL++ G +IGINT +T AG+ FAIPS + K + +
Sbjct: 159 DYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-----AGISFAIPSDKIKKFLTESHD 213
Query: 240 ---------LIQYGKVVRAGLNVDIAPDLVASQL---NVGNGALVLQVPGNSLAAKAGIL 287
+Y + L A +L +V +GA +++V +
Sbjct: 214 RQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEV-----------I 262
Query: 288 PTTRGFAGNIILGDIIVAVNNKPV 311
P T AG + D+I+++N + V
Sbjct: 263 PDTPAEAGGLKENDVIISINGQSV 286
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 53 EIPEGNGSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVG 112
E+P +GSG + G IVTN HV+ + RV + +G +E K+
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNK-----------HRVKVELKNGA--TYEAKIKD 105
Query: 113 ADRAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRD 172
D D+A++KI+ + L + +G+SS L+ G+ +AIG+PF +T+T G++S R
Sbjct: 106 VDEKADIALIKID-HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR- 163
Query: 173 IFSQAGVTIG------GGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G +G IQTDA IN GNSGGPL++ G +IGINT +T AG+ F
Sbjct: 164 ----GGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT-----AGISF 214
Query: 227 AIPSSTVLKIVPQ 239
AIPS + K + +
Sbjct: 215 AIPSDKIKKFLTE 227
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 53 EIPEGNGSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVG 112
E+P +GSG + G IVTN HV+ + RV + +G +E K+
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNK-----------HRVKVELKNGA--TYEAKIKD 105
Query: 113 ADRAKDLAVLKIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNRD 172
D D+A++KI+ + L + +G+SS L+ G+ +AIG+PF +T+T G++S R
Sbjct: 106 VDEKADIALIKID-HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQR- 163
Query: 173 IFSQAGVTIG------GGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G +G IQTDA IN GN+GGPL++ G +IGINT +T AG+ F
Sbjct: 164 ----GGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT-----AGISF 214
Query: 227 AIPSSTVLKIVPQ 239
AIPS + K + +
Sbjct: 215 AIPSDKIKKFLTE 227
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 149/309 (48%), Gaps = 57/309 (18%)
Query: 23 IAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKGHIVTNFHVIGSALS 82
IA + EK +VV I + P L E+P NGSG V G IVTN HV+
Sbjct: 17 IADVVEKTAPAVVYIEILDRHPFLGR----EVPISNGSGFVVAADGLIVTNAHVVADRRR 72
Query: 83 RKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVLKIEASEDLLKPINVGQSSFL 142
RV +L+ D +E + D D+A L+I+ E L + +G+S+ +
Sbjct: 73 ---------VRVRLLSGD----TYEAVVTAVDPVADIATLRIQTKEPL-PTLPLGRSADV 118
Query: 143 KVGQQCLAIGNPFGFDHTLTVGVISGLNR---DI-FSQAGVTIGGGIQTDAAINPGNSGG 198
+ G+ +A+G+PF +T+T G++S R D+ Q V IQTDAAI+ GN+GG
Sbjct: 119 RQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEY---IQTDAAIDFGNAGG 175
Query: 199 PLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQ-------------LIQYGK 245
PL++ G +IG+NT +T AG+ FAIPS + + + + +Y
Sbjct: 176 PLVNLDGEVIGVNTMKVT-----AGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIG 230
Query: 246 VVRAGLNVDIAPDLVASQ---LNVGNGALVLQVPGNSLAAKAGILPTTRGFAGNIILGDI 302
V+ L+ I +L + +V +G L+ +V S A +AG+ P GD+
Sbjct: 231 VMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRP-----------GDV 279
Query: 303 IVAVNNKPV 311
I+A+ + V
Sbjct: 280 ILAIGEQMV 288
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 39/253 (15%)
Query: 66 GKGHIVTNFHVIGS----ALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAV 121
G G ++TN H + + R+ + + VA+V + D D+A+
Sbjct: 82 GDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDC----------------DIAL 125
Query: 122 LKIEASEDLLK---PINVGQSSFLKVGQQCLAIGNPFGFDH-TLTVGVISGLNRDIFSQA 177
L +E SED K P+ +G ++ +G P G D ++T GV+S + ++
Sbjct: 126 LSVE-SEDFWKGAEPLRLGH--LPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAH- 181
Query: 178 GVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSSTVLKIV 237
G + GIQ DAAINPGNSGGP + +G IG+ + T +G+ IP++ V +
Sbjct: 182 GSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETE-NIGYVIPTTVVSHFL 240
Query: 238 PQLIQYGKVVRAGLNVDIAPDLVASQLNVGNGAL--VLQVPGNSLAAKAGILPTTRGFAG 295
+ GK P L + N AL L+VP N + PT+ +
Sbjct: 241 TDYERNGKYTG-------YPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDA-SK 292
Query: 296 NIILGDIIVAVNN 308
+ GD+IV+ ++
Sbjct: 293 VLKEGDVIVSFDD 305
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 118 DLAVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR 171
DLA+++++ + D + P +G S+ LK G + IG PF DH ++ ++R
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHK-----VNQMHR 172
Query: 172 DIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAI 228
T+ G++ PGNSG + +S G L+GI+++ ++ + + +
Sbjct: 173 SEIEL--TTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGV 227
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 118 DLAVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR 171
DLA+++++ + D + P +G S+ LK G + IG PF DH ++ ++R
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHK-----VNQMHR 172
Query: 172 DIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAI 228
T+ G++ PGN+G + +S G L+GI+++ ++ + + +
Sbjct: 173 SEIEL--TTLSRGLRYYGFTVPGNAGSGIFNSNGELVGIHSSKVSHLDREHQINYGV 227
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 66 GKGHIVTNFHVIGSALSR------KPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDL 119
GK IVTN+HV A PA+ + + G + E K + DL
Sbjct: 55 GKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDL 114
Query: 120 AVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGFD-HTLTVGVISGLNRD 172
A++K++ +E DL++P N+ ++ G + +G P+ + ++L I N
Sbjct: 115 AIIKLKPNEKGESAGDLIQPANIPDHIDIQKGDKYSLLGYPYNYSAYSLYQSQIEMFNDS 174
Query: 173 IFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSST 232
Q GNSG + + KG LIGI++ Q GV F S+
Sbjct: 175 -------------QYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISS 221
Query: 233 VLKI 236
+ +
Sbjct: 222 LYSV 225
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 66 GKGHIVTNFHVIGSALSR------KPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDL 119
GK IVTN+HV A PA+ + + G + E K + DL
Sbjct: 56 GKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDL 115
Query: 120 AVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGFD-HTLTVGVISGLNRD 172
A++K++ +E DL++P N+ + G + +G P+ + ++L I N
Sbjct: 116 AIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQSQIEMFNDS 175
Query: 173 IFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQTGTSAGVGFAIPSST 232
Q GNSG + + KG LIGI++ Q GV F S+
Sbjct: 176 -------------QYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISS 222
Query: 233 VLKI 236
+ +
Sbjct: 223 LYSV 226
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 117 KDLAVLKIE--ASEDLLKPINVGQSSFL---KVGQQCLAIGNPFG-------FDHTLTVG 164
+DLA++ + ++E L NV + F KV + IG P G F+ T T+
Sbjct: 77 EDLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTIN 136
Query: 165 VISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGI 210
ISG ++ DA PGNSG P+L+SK LIGI
Sbjct: 137 HISGT--------------FMEFDAYAQPGNSGSPVLNSKHELIGI 168
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
V +G G +++ V+ +A VVA N + K FE +V D + D+A+L
Sbjct: 57 VLEGTGFVISPDRVMTNA--------HVVAGSNNVTVYAGDKPFEATVVSYDPSVDVAIL 108
Query: 123 KIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR----DIFSQAG 178
A L P V + K G + +G P G + T T I R DI+
Sbjct: 109 ---AVPHLPPPPLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPE 165
Query: 179 VTIGGGIQTDAAINPGNSGGPLLDSKGNLIGI 210
A + G+SGGPL+D G ++G+
Sbjct: 166 PVTRDVYTIRADVEQGDSGGPLIDLNGQVLGV 197
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
V +G G +++ V+ +A VVA N + K FE +V D + D+A+L
Sbjct: 39 VLEGTGFVISPDRVMTNA--------HVVAGSNNVTVYAGDKPFEATVVSYDPSVDVAIL 90
Query: 123 KIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR----DIFSQAG 178
A L P V + K G + +G P G + T T I R DI+
Sbjct: 91 ---AVPHLPPPPLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPE 147
Query: 179 VTIGGGIQTDAAINPGNSGGPLLDSKGNLIGI 210
A + G+SGGPL+D G ++G+
Sbjct: 148 PVTRDVYTIRADVEQGDSGGPLIDLNGQVLGV 179
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 223 GVGFAIPSSTVLKIVPQLIQYGKVVRAGLNVDIA--PDLVASQL-------NVGNGALVL 273
G+GFAIP++ + I+ QL + GKV R L + + ++ S + NV +G +V
Sbjct: 3 GLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVR 62
Query: 274 QVPGNSLAAKAGILPTTRGFAGNIILGDIIVAVNNKPVSFSCLSIPSRIY 323
V N +P G++ D+I V++K ++ S + S +Y
Sbjct: 63 SVQSN--------MPAN----GHLEKYDVITKVDDKEIA-SSTDLQSALY 99
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 10 VFPSGQLLPNEERIAQLFEKNTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVV-WDGKG 68
V+ + LL N ERI+ L + +VN D+ L PT+N G EGN + + G+G
Sbjct: 112 VYMAQYLLGNHERISDLGQ-----LVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRG 166
Query: 69 HIV--------------TNFHVIGSALSRKPAEGQVVARVNILASDG--VQKNFEGKLVG 112
+ ++ H + A SR+P + A VN + S + NF G V
Sbjct: 167 NAANIDLNRDFPDRLEQSHVHQL-RAQSRQP---ETAALVNWIVSKPFVLSANFHGGAVV 222
Query: 113 ADRAKDLAVLKIEASEDLLKP 133
A D ++ E E+ L P
Sbjct: 223 ASYPYDNSLAHNECCEESLTP 243
>pdb|3URE|A Chain A, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
pdb|3URE|B Chain B, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
Length = 198
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
IQ +A + G+SGG L+ S G IG+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LIQGNACMGRGDSGGSLITSAGQAIGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 63 VWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGKLVGADRAKDLAVL 122
V +G G +++ V+ +A VVA N + K FE +V D + D+A+L
Sbjct: 37 VLEGTGFVISPDRVMTNA--------HVVAGSNNVTVYAGDKPFEATVVSYDPSVDVAIL 88
Query: 123 KIEASEDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR----DIFSQAG 178
A L P V + K G + +G P G + T T I R DI+
Sbjct: 89 ---AVPHLPPPPLVFAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPE 145
Query: 179 VTIGGGIQTDAAINPGNSGGPLLDSKGNLIGI 210
A + G++GGPL+D G ++G+
Sbjct: 146 PVTRDVYTIRADVEQGDAGGPLIDLNGQVLGV 177
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 52 VEIPEGN--GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGK 109
VE P G SGVV GK ++TN HV+ + A + +N Q N+
Sbjct: 27 VEAPTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAIN-------QDNYPNG 78
Query: 110 LVGADR------AKDLAVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGF 157
A++ DLA++K +E +++KP + ++ +V Q G P G
Sbjct: 79 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP-GD 137
Query: 158 DHTLTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGIN 211
T+ G + G +Q D + GNSG P+ + K +IGI+
Sbjct: 138 KPVATMWESKG-------KITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 41/162 (25%)
Query: 84 KPAEGQVVARVNILASDGVQKNFE---------------------GKLVGADRAKDLAVL 122
K A G VV + IL + V KN++ K++ +D++V+
Sbjct: 22 KSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVI 81
Query: 123 KIEAS-----------EDLLKPINVGQSSFLKVGQQCLAIGNPFGFDHTLTVGVISGLNR 171
++E D + P + K G++ IG P + + + +G
Sbjct: 82 QVEERAIERGPKGFNFNDNVTPFKYAAGA--KAGERIKVIGYPHPYKNKYVLYESTG--- 136
Query: 172 DIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGINTA 213
+ S G +I T++ GNSG P+L+S L+GI+ A
Sbjct: 137 PVMSVEGSSIVYSAHTES----GNSGSPVLNSNNELVGIHFA 174
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 188 DAAINPGNSGGPLLDSKGNLIGI 210
DA I PGNSG P+L+S +IG+
Sbjct: 150 DAYIEPGNSGSPVLNSNNEVIGV 172
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 52 VEIPEGN--GSGVVWDGKGHIVTNFHVIGSALSRKPAEGQVVARVNILASDGVQKNFEGK 109
VE P G SGVV GK ++TN HV+ + A + +N Q N+
Sbjct: 27 VEAPTGTFIASGVVV-GKDTLLTNKHVVDATHGDPHALKAFPSAIN-------QDNYPNG 78
Query: 110 LVGADR------AKDLAVLKIEASE------DLLKPINVGQSSFLKVGQQCLAIGNPFGF 157
A++ DLA++K +E +++KP + ++ + Q G P G
Sbjct: 79 GFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYP-GD 137
Query: 158 DHTLTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGNLIGIN 211
T+ G + G +Q D + GNSG P+ + K +IGI+
Sbjct: 138 KPVATMWESKG-------KITYLKGEAMQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|4IEN|A Chain A, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|B Chain B, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|C Chain C, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|D Chain D, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
Length = 163
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 274 QVPGNSLAAKAGILPTTRGFAGNIILGDIIVAVNNKPVSFSCLSIPSRIYLI 325
Q+P + L ++P T F+GN+ G++++ ++ V++SC S S Y +
Sbjct: 9 QLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQ--VAYSCASRYSGNYCV 58
>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+++GI A + G + V F
Sbjct: 138 GSSGGPLLCPSGHVVGIFKAAVCTRGVAKAVDF 170
>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
Length = 187
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+++GI A + G + V F
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDF 170
>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
Length = 186
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+++GI A + G + V F
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDF 169
>pdb|1DY8|A Chain A, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY8|B Chain B, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY9|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DY9|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DXP|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1DXP|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1W3C|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|1W3C|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|3OYP|A Chain A, Hcv Ns34A IN COMPLEX WITH LIGAND 3
pdb|3OYP|B Chain B, Hcv Ns34A IN COMPLEX WITH LIGAND 3
Length = 187
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+++GI A + G + V F
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDF 169
>pdb|1RZF|H Chain H, Crystal Structure Of Human Anti-hiv-1 Gp120-reactive
Antibody E51
Length = 235
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 239 QLIQYG-KVVRAGLNVDIAPDLVASQLNVGNGALVLQVPGNSLAAKAGILP 288
QL+Q G +V + G +V ++ + LN + V Q PG L AGI+P
Sbjct: 3 QLVQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIP 53
>pdb|3SV8|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Telaprevir
Length = 203
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVAF 190
>pdb|1QQ4|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S
pdb|1QRW|A Chain A, Crystal Structure Of An Alpha-Lytic Protease Mutant With
Accelerated Folding Kinetics, R102hG134S, PH 8
Length = 198
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPFGFDHTLT---VGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G T G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCHSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q++A + G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQSNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 204
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 204
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 151 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 183
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 204
>pdb|1NS3|A Chain A, Structure Of Hcv Protease (Bk Strain)
pdb|1NS3|B Chain B, Structure Of Hcv Protease (Bk Strain)
Length = 186
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 169
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 204
>pdb|1JXP|A Chain A, Bk Strain Hepatitis C Virus (Hcv) Ns3-Ns4a
pdb|1JXP|B Chain B, Bk Strain Hepatitis C Virus (Hcv) Ns3-Ns4a
pdb|1DXW|A Chain A, Structure Of Hetero Complex Of Non Structural Protein (Ns)
Of Hepatitis C Virus (Hcv) And Synthetic Peptidic
Compound
pdb|1BT7|A Chain A, The Solution Nmr Structure Of The N-Terminal Protease
Domain Of The Hepatitis C Virus (Hcv) Ns3-Protein, From
Bk Strain, 20 Structures
pdb|2K1Q|A Chain A, Nmr Structure Of Hepatitis C Virus Ns3 Serine Protease
Complexed With The Non-Covalently Bound Phenethylamide
Inhibitor
Length = 186
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 169
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 206 NLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQLIQYGKVVRAGLNV--DIAPD 258
NL+ +N AI AG GFA+ + + K+ + Q + VR +N IA D
Sbjct: 141 NLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAED 195
>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+++GI A + G + V F
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVVF 170
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 206 NLIGINTAIITQTGTSAGVGFAIPSSTVLKIVPQLIQYGKVVRAGLNV--DIAPD 258
NL+ +N AI AG GFA+ + + K+ + Q + VR +N IA D
Sbjct: 141 NLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVNEIRSIAED 195
>pdb|1A1Q|A Chain A, Hepatitis C Virus Ns3 Proteinase
pdb|1A1Q|B Chain B, Hepatitis C Virus Ns3 Proteinase
pdb|1A1Q|C Chain C, Hepatitis C Virus Ns3 Proteinase
Length = 189
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 137 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 169
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 30 NTYSVVNIFDVTLRPTLNVTGLVEIPEGNGSGVVWDGKGHIVTNFHVIGS 79
+ Y V I+ RP NV L PE +V DG+ IV HV+G
Sbjct: 383 HRYKRVEIYRTVFRPMRNV--LSGSPEKMFMKLVVDGESRIVVGAHVLGE 430
>pdb|1GBI|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
pdb|1GBH|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|1GBF|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1GBE|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Leu
Length = 198
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q +A G+SGG + S G G+ + + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQGNACAGRGDSGGSWITSAGQAQGVMSGLNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3SUF|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|C Chain C, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
pdb|3SUF|D Chain D, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH MK- 5172
Length = 203
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 158 GSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVAF 190
>pdb|3SV7|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Telaprevir
pdb|3SUE|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|C Chain C, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
pdb|3SUE|D Chain D, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH MK- 5172
Length = 203
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSSGGPLLCPAGHAVGIFKAAVSTRGVAKAVDF 190
>pdb|3KEE|A Chain A, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|B Chain B, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|C Chain C, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
pdb|3KEE|D Chain D, Hcv Ns3NS4A COMPLEXED WITH NON-Covalent Macrocyclic
Compound Tmc435
Length = 190
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 138 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 170
>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
Length = 185
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 191 INPGNSGGPLLDSKGNLIGI-NTAIITQTG 219
+PG SG P++D KG ++G+ ++T++G
Sbjct: 130 FSPGTSGSPIVDKKGKVVGLYGNGVVTRSG 159
>pdb|3SV6|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
TELAPREVIR
Length = 203
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVDF 190
>pdb|4A1T|A Chain A, Co-Complex Of The Of Ns3-4a Protease With The Inhibitory
Peptide Cp5-46-A (In-House Data)
pdb|4A1T|B Chain B, Co-Complex Of The Of Ns3-4a Protease With The Inhibitory
Peptide Cp5-46-A (In-House Data)
pdb|4A1V|A Chain A, Co-Complex Structure Of Ns3-4a Protease With The Optimized
Inhibitory Peptide Cp5-46a-4d5e
pdb|4A1V|B Chain B, Co-Complex Structure Of Ns3-4a Protease With The Optimized
Inhibitory Peptide Cp5-46a-4d5e
pdb|4A1X|A Chain A, Co-Complex Structure Of Ns3-4a Protease With The
Inhibitory Peptide Cp5-46-A (Synchrotron Data)
pdb|4A1X|B Chain B, Co-Complex Structure Of Ns3-4a Protease With The
Inhibitory Peptide Cp5-46-A (Synchrotron Data)
Length = 203
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +GI A + G + V F
Sbjct: 152 GSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDF 184
>pdb|3URC|A Chain A, T181g Mutant Of Alpha-Lytic Protease
Length = 198
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGL 131
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
G Q +A + G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 132 G-QGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3SU1|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Danoprevir
pdb|3SU5|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT D168A IN
COMPLEX WITH Vaniprevir
Length = 203
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G++GGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSAGGPLLCPAGHAVGIFRAAVSTRGVAKAVAF 190
>pdb|2QV1|A Chain A, Crystal Structure Of Hcv Ns3-4a V36m Mutant
pdb|2QV1|B Chain B, Crystal Structure Of Hcv Ns3-4a V36m Mutant
Length = 181
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +G+ A + G + V F
Sbjct: 137 GSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDF 169
>pdb|2P59|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3.4a Protease
pdb|2P59|B Chain B, Crystal Structure Of Hepatitis C Virus Ns3.4a Protease
Length = 181
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G+SGGPLL G+ +G+ A + G + V F
Sbjct: 137 GSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDF 169
>pdb|1P01|A Chain A, Serine Protease Mechanism. Structure Of An Inhibitory
Complex Of Alpha-lytic Protease And A Tightly Bound
Peptide Boronic Acid
pdb|1P02|A Chain A, Structure Analysis Of Specificity. Alpha-lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P03|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P04|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P05|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P06|A Chain A, Structure Analysis Of Specificity. Alpha-Lytic Protease
Complexes With Analogues Of Reaction Intermediates
pdb|1P11|E Chain E, Crystal Structures Of Alpha-Lytic Protease Complexes With
Irreversibly Bound Phosphonate Esters
pdb|1P12|E Chain E, Crystal Structures Of Alpha-Lytic Protease Complexes With
Irreversibly Bound Phosphonate Esters
pdb|9LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|1QRX|A Chain A, Crystal Structure Of Wild-Type Alpha-Lytic Protease At 1.6
A, Ph 5.14
pdb|1TAL|A Chain A, Alpha-Lytic Protease At 120 K (Single Structure Model)
pdb|2ALP|A Chain A, Refined Structure Of Alpha-Lytic Protease At 1.7 Angstroms
Resolution. Analysis Of Hydrogen Bonding And Solvent
Structure
pdb|2ULL|A Chain A, Multiple Conformation Structure Of Alpha-Lytic Protease At
120 K
pdb|3QGJ|A Chain A, 1.3a Structure Of Alpha-Lytic Protease Bound To
Ac-Alaalapro-Alanal
pdb|3QGJ|C Chain C, 1.3a Structure Of Alpha-Lytic Protease Bound To
Ac-Alaalapro-Alanal
pdb|2H5D|A Chain A, 0.9a Resolution Crystal Structure Of Alpha-Lytic Protease
Complexed With A Transition State Analogue,
Meosuc-Ala-Ala-Pro-Val Boronic Acid
pdb|1SSX|A Chain A, 0.83a Resolution Crystal Structure Of Alpha-Lytic Protease
At Ph 8
pdb|2H5C|A Chain A, 0.82a Resolution Crystal Structure Of Alpha-Lytic Protease
At Ph 5
Length = 198
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q +A + G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 191 INPGNSGGPLLDSKGNLIGI-NTAIITQTG 219
PG SG P+++ KG +IG+ ++T++G
Sbjct: 130 FKPGTSGSPIINKKGKVIGLYGNGVVTKSG 159
>pdb|3M7U|A Chain A, Crystal Structure Of Alpha-Lytic Protease Sb1+2 R64aE182Q
MUTANT
Length = 198
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDAAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q +A + G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFQRLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3SU0|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Danoprevir
Length = 198
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G++GGPLL G+ +GI A ++ G + V F
Sbjct: 155 GSAGGPLLCPAGHAVGIFKAAVSTRGVAKAVDF 187
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 191 INPGNSGGPLLDSKGNLIGI-NTAIITQTG 219
PG SG P+++ KG +IG+ ++T++G
Sbjct: 130 FKPGTSGSPIINKKGKVIGLYGNGVVTKSG 159
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 191 INPGNSGGPLLDSKGNLIGI-NTAIITQTG 219
PG SG P+++ KG +IG+ ++T++G
Sbjct: 130 FKPGTSGSPIINKKGKVIGLYGNGVVTKSG 159
>pdb|1P09|A Chain A, Structural Plasticity As A Determinant Of Enzyme
Specificity. Creating Broadly Specific Proteases
pdb|1P10|A Chain A, Structural Plasticity As A Determinant Of Enzyme
Specificity. Creating Broadly Specific Proteases
pdb|5LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-lytic
Protease Mutants
pdb|6LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|7LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|8LPR|A Chain A, Structural Basis For Broad Specificity In Alpha-Lytic
Protease Mutants
pdb|3PRO|A Chain A, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|3PRO|B Chain B, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|4PRO|A Chain A, Alpha-lytic Protease Complexed With Pro Region
pdb|4PRO|B Chain B, Alpha-lytic Protease Complexed With Pro Region
Length = 198
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q +A + G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQGNACMGRGDSGGSWITSAGQAQGVASGGNVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3SU4|A Chain A, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Vaniprevir
pdb|3SU4|B Chain B, Crystal Structure Of Ns34A PROTEASE VARIANT R155K IN
COMPLEX WITH Vaniprevir
Length = 203
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G++GGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSAGGPLLCPAGHAVGIFKAAVSTRGVAKAVDF 190
>pdb|1GBD|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Phenylalanine Boronic Acid
pdb|1GBC|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Leucine Boronic Acid
pdb|1GBB|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala Complex With
Methoxysuccinyl-Ala-Ala-Pro-Alanine Boronic Acid
pdb|1GBA|A Chain A, Alpha-Lytic Protease With Met 190 Replaced By Ala And Gly
216 Replaced By Ala
Length = 198
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 77 IGSALSRKPAEGQVVA----RVNILASDGVQKNFEGKLVGADRAK-----DLAVLKIEAS 127
+G +++R +G V A VN A G G +VG A+ D A + + ++
Sbjct: 19 VGFSVTRGATKGFVTAGHCGTVNATARIG------GAVVGTFAARVFPGNDRAWVSLTSA 72
Query: 128 EDLLKPINVGQSSFLKV-GQQCLAIGNPF---GFDHTLTVGVISGLNRDIFSQAGVTIGG 183
+ LL + G SSF+ V G A+G G G I+ N G + G
Sbjct: 73 QTLLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGA-VRG 130
Query: 184 GIQTDAAINPGNSGGPLLDSKGNLIGINTAIITQT-GTSAGVGFAIPSSTVLKIVPQLIQ 242
Q +A G+SGG + S G G+ + Q+ G + G+ + SS ++ P L Q
Sbjct: 131 LTQGNACAGRGDSGGSWITSAGQAQGVMSGANVQSNGNNCGIPASQRSSLFERLQPILSQ 190
Query: 243 YG 244
YG
Sbjct: 191 YG 192
>pdb|3M5L|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
ITMN-191
pdb|3M5M|A Chain A, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5M|B Chain B, Avoiding Drug Resistance Against Hcv Ns34A PROTEASE
INHIBITORS
pdb|3M5N|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|C Chain C, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5N|D Chain D, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 4b5a
pdb|3M5O|A Chain A, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3M5O|B Chain B, Crystal Structure Of Hcv Ns34A PROTEASE IN COMPLEX WITH
N-Terminal Product 5a5b
pdb|3RC4|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC5|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3RC6|A Chain A, Molecular Mechanisms Of Viral And Host-Cell Substrate
Recognition By Hcv Ns34A PROTEASE
pdb|3SU3|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
VANIPREVIR
pdb|3SUD|A Chain A, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|B Chain B, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|C Chain C, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
pdb|3SUD|D Chain D, Crystal Structure Of Ns34A PROTEASE IN COMPLEX WITH
MK-5172
Length = 203
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 194 GNSGGPLLDSKGNLIGINTAIITQTGTSAGVGF 226
G++GGPLL G+ +GI A ++ G + V F
Sbjct: 158 GSAGGPLLCPAGHAVGIFRAAVSTRGVAKAVDF 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,362,645
Number of Sequences: 62578
Number of extensions: 450719
Number of successful extensions: 1646
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 150
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)