BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019507
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 21/280 (7%)
Query: 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 106
+++ I+ + I +D G GV++ + NG ++ ++ H+DR SA RI+
Sbjct: 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 107 PFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID---- 160
P+ + +L +L ++ G + F +T G SP P + V+I
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGT-----SPRAHQFPENTVKPVIIGYTKE 117
Query: 161 --DDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGY 218
++GVK + + L +K++N L VLAK EA +KG +I + +
Sbjct: 118 NPRPLENLEKGVKA--TFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNT 174
Query: 219 VAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 278
V EG + NV I P + IL G T ++ A ++ VK T E
Sbjct: 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHE 229
Query: 279 AKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 318
A E+ +T + + D + I DG VGE T L
Sbjct: 230 ALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 21/266 (7%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
I +D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID------DDFSQCKEGVKV 172
++ G + F +T G SP P + V+I ++GVK
Sbjct: 77 VEKNELNTGHIYFQVTRG-----TSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKA 131
Query: 173 ITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITH 232
+ + L +K++N L VLAK EA +KG +I + + V EG + NV I
Sbjct: 132 --TFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKD 188
Query: 233 DKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTL 292
P + IL G T ++ A ++ VK T EA E+ +T
Sbjct: 189 GILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 293 PLLAITVWDEQPIGDGNVGELTMALS 318
+ + D + I DG VGE T L
Sbjct: 244 EITPVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 111/263 (42%), Gaps = 21/263 (7%)
Query: 64 DDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123
+D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 20 EDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEK 79
Query: 124 SQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID------DDFSQCKEGVKVITS 175
++ G + F +T G SP P + V+I ++GVK +
Sbjct: 80 NELNTGHIYFQVTRG-----TSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKA--T 132
Query: 176 SIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+ L +K++N L VLAK EA +KG +I + + V EG + NV I
Sbjct: 133 FVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGIL 191
Query: 236 LVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLL 295
P + IL G T ++ A ++ VK T EA E+ +T +
Sbjct: 192 YTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 296 AITVWDEQPIGDGNVGELTMALS 318
+ D + I DG VGE T L
Sbjct: 247 PVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 27/275 (9%)
Query: 65 DHMVHRGHGVFDTAIILNGY-------LYELDVHLDRFLRSAVSARISSPFPRSTLRSIL 117
H +H G VF+ + Y ++ L H+ RF SA R+ PF L +
Sbjct: 26 SHALHYGTSVFEG---IRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAI 82
Query: 118 VQLTAASQCKKGTLR--FWLTA---GPGDFLLSPAGCPTSAF-YAVVIDDDFSQCKEGVK 171
++ + + +R W+ A G +PA +A+ + + ++ ++G +
Sbjct: 83 KEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEE--AVRKGAR 140
Query: 172 VITSSIPMKPRLFATVK---NVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVA 228
+ITSS P K NY+ + LAKMEA GA ++ +DE+GYVAEG N+
Sbjct: 141 LITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENL- 199
Query: 229 FITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYV 288
F D + L G T ++ +A L + V+ T D+ A E+
Sbjct: 200 FFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYE-----VQVVRATRDQLYMADEVFMT 254
Query: 289 GSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
G+ + +++ D +PIG G G + + L ++ E
Sbjct: 255 GTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLE 289
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 21/266 (7%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
I +D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID------DDFSQCKEGVKV 172
++ G + F +T G SP P + V+I ++GVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKA 131
Query: 173 ITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITH 232
+ + L +K++N L VLAK EA +KG +I + + V +G + NV I
Sbjct: 132 --TFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTKGSSSNVFGIKD 188
Query: 233 DKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTL 292
P + IL G T ++ A ++ VK T EA E+ +T
Sbjct: 189 GILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 293 PLLAITVWDEQPIGDGNVGELTMALS 318
+ + D + I DG VGE T L
Sbjct: 244 EITPVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 21/263 (7%)
Query: 64 DDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123
+D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 20 EDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEK 79
Query: 124 SQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID------DDFSQCKEGVKVITS 175
++ G + F +T G SP P + V+I ++GVK +
Sbjct: 80 NELNTGHIYFQVTRG-----TSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKA--T 132
Query: 176 SIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+ L +K++N L VLAK EA +KG +I + + V EG + NV I
Sbjct: 133 FVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIKDGIL 191
Query: 236 LVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLL 295
P + I G T ++ A ++ VK T EA E+ +T +
Sbjct: 192 YTHPANNMIAKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 296 AITVWDEQPIGDGNVGELTMALS 318
+ D + I DG VGE T L
Sbjct: 247 PVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 21/263 (7%)
Query: 64 DDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123
+D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 20 EDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEK 79
Query: 124 SQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID------DDFSQCKEGVKVITS 175
++ G + F +T G SP P + V+I ++GVK +
Sbjct: 80 NELNTGHIYFQVTRG-----TSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKA--T 132
Query: 176 SIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+ L +K++N L VLAK EA +KG +I + + V G + NV I
Sbjct: 133 FVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTSGSSSNVFGIKDGIL 191
Query: 236 LVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLL 295
P + IL G T ++ A ++ VK T EA E+ +T +
Sbjct: 192 YTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHEALKMDELFVTSTTSEIT 246
Query: 296 AITVWDEQPIGDGNVGELTMALS 318
+ D + I DG VGE T L
Sbjct: 247 PVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 118/292 (40%), Gaps = 36/292 (12%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGY--------LYELDVHLDRFLRSAVSARISSPFPRST 112
I + H +H G GVF+ + Y ++ L H R L SA ++ PF + T
Sbjct: 45 IHVLTHTLHYGMGVFEG---VRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQET 101
Query: 113 LRSILVQLTAASQCKKGTLR--FWL-------TAGPGDFLLSPAGCPTSAFYAVVIDDDF 163
L + + ++ + LR W+ +A ++ A P A+
Sbjct: 102 LEAAQRDVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGE------ 155
Query: 164 SQCKEGVKVITSSIPMKPRLFATVKNVN---YLPNVLAKMEAEDKGASASIWIDEDGYVA 220
+G++V TSS + V+ Y+ ++LA EA G ++ +D DGYV+
Sbjct: 156 EGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDVDGYVS 215
Query: 221 EGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 280
EG N F+ + +L P L G T ++ LA E G V +T DE
Sbjct: 216 EGSGENF-FLVNRGKLYTPDLASCLDGITRDTVITLAK---EAG--IEVIEKRITRDEVY 269
Query: 281 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQ 332
A E + G+ + I D + IG G G +T L + D+V G +
Sbjct: 270 TADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAFF-DVVNGKSAK 320
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 32/277 (11%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
+ + D + G G+F+T + G L+ HL R R++ P + LR L+
Sbjct: 34 LSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARL--EEGCRRLAIPLDTAALRQELLAF 91
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSP----------AGCPTSAFYAVVIDDDFSQCKEGV 170
AA G + +T G G +P +G P A+ ++GV
Sbjct: 92 CAA--LGDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPE-------RHWQQGV 142
Query: 171 KVITSSIPMKPR-LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAF 229
++ + + L A +K++N L VLA+ E D G + + +D V EG N+
Sbjct: 143 RLFACRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNLLL 202
Query: 230 ITHDKELVLPFFDKI-LSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYV 288
+ D LV P + ++G LLE A + ++ V A L A E+
Sbjct: 203 VL-DGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELAT-----ADEVFLC 256
Query: 289 GSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM 325
S + + DE VGELT L D L +D+
Sbjct: 257 NSQFGIWPVRALDEHVW---PVGELTRKLQDQLRDDL 290
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|C Chain C, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|D Chain D, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
Length = 246
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 53 ILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRST 112
+L+ + + + + ++ G VF T G L+ HL R R A++ +S P +
Sbjct: 3 LLNGTPLALALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEAF 62
Query: 113 LRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKV 172
L + L A + LR T G G L + YA + S +EGV+V
Sbjct: 63 LEDLEALLRAFPKAP--CLRLRFTVGEGVRL------SEARPYAPL---PLSLYREGVRV 111
Query: 173 ITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITH 232
+ + P L A K NYLP LA EA +GA + +D G+V +G +
Sbjct: 112 RLTGYRVHPDL-ARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSPLLF-- 168
Query: 233 DKELVLPFFDKILSGCTAKRLLELAPKL---VEQG 264
+E L + L G T +++ E A L VE+G
Sbjct: 169 -REGTLYLLEGGLEGITREKVAEAARGLGLRVERG 202
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 191 NYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTA 250
NYL ++L EA G I +D +GY++EG N+ + PF L G T
Sbjct: 163 NYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITR 222
Query: 251 KRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNV 310
+++LA +L + R + + +L + A E+ G+ + + D +G+G
Sbjct: 223 DAIIKLAKELGIEVREQVLSRESLYL-----ADEVFMSGTAAEITPVRSVDGIQVGEGRC 277
Query: 311 GELT 314
G +T
Sbjct: 278 GPVT 281
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 191 NYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTA 250
NYL ++L EA G I +D +GY++EG N+ + PF L G T
Sbjct: 164 NYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITR 223
Query: 251 KRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNV 310
+++LA +L + R + + +L + A E+ G+ + + D +G+G
Sbjct: 224 DAIIKLAKELGIEVREQVLSRESLYL-----ADEVFMSGTAAEITPVRSVDGIQVGEGRC 278
Query: 311 GELT 314
G +T
Sbjct: 279 GPVT 282
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFI---THDKELVLP-FFDKI 244
NY ++LA+ EA + G +W+D E Y+ E +N+ F+ LV P +
Sbjct: 208 NYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSL 267
Query: 245 LSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE--AKGAA----EMMYVGSTLPLLAIT 298
L G T LL+LA ++ G +V+ + +DE K AA E+ G+ + +
Sbjct: 268 LPGITRDSLLQLA---IDAG--FAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVA 322
Query: 299 V----WDEQPIGDGNVGELTMALSDLL 321
E I DG GE+TMAL D L
Sbjct: 323 RVRHGASEFRIADGQPGEVTMALRDTL 349
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 36 VKKKPYPA-MYSSIFGGIIL--DPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHL 92
+K P P + +GG I +P + + DD + RG G+F+T +I +G+ + H
Sbjct: 8 IKSAPTPVILIVEPYGGSIRQQNPNLPXVFWDDAALTRGDGIFETLLIRDGHACNVRRHG 67
Query: 93 DRFLRSAV 100
+RF SA
Sbjct: 68 ERFKASAA 75
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFI---THDKELVLP-FFDKI 244
NY ++LA+ +A + G +W+D E YV E +N+ F+ LV P +
Sbjct: 213 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 272
Query: 245 LSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK---GAAEMMYV------GSTLPLL 295
L G T LL+LA + G +V+ + VDE + GA E+ V P+
Sbjct: 273 LPGITRDSLLQLA---TDAGF--AVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 327
Query: 296 AITVWD-EQPIGDGNVGELTMALSDLL 321
+ D E I DG GE+TMAL D L
Sbjct: 328 HVKHHDGEFTIADGQPGEITMALRDTL 354
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFI---THDKELVLP-FFDKI 244
NY ++LA+ +A + G +W+D E YV E +N+ F+ LV P +
Sbjct: 212 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 271
Query: 245 LSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK---GAAEMMYV------GSTLPLL 295
L G T LL+LA + G +V+ + VDE + GA E+ V P+
Sbjct: 272 LPGITRDSLLQLA---TDAGF--AVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVS 326
Query: 296 AITVWD-EQPIGDGNVGELTMALSDLL 321
+ D E I DG GE+TMAL D L
Sbjct: 327 HVKHHDGEFTIADGQPGEITMALRDTL 353
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVN--VAFITHD--KELVLPFFDK-I 244
NY ++ A+ EA D G +W+ ED + E +N + +I D +EL P D I
Sbjct: 226 NYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGII 285
Query: 245 LSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAE 284
L G T + +L+LA + G K V LT+D+ A E
Sbjct: 286 LPGVTRRCILDLAH---QWGEFK-VSERYLTMDDLTTALE 321
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 191 NYLPNVLAKMEAEDKGASASIWI-DEDGYVAEGPNVNV-AFITHDK---ELVLPFFDK-I 244
NY P VL + EA +G +W+ D + E +N+ + TH+ ELV P + I
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVI 265
Query: 245 LSGCTAKRLLELA 257
L G + LL++A
Sbjct: 266 LPGVVRQSLLDMA 278
>pdb|1KZQ|A Chain A, Crystal Structure Of A Parasite Protein
pdb|1KZQ|B Chain B, Crystal Structure Of A Parasite Protein
Length = 289
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 245 LSGCTAKRLLELAPKLVE---QGRLKSVKTANLTVDEAKGAAEMMYV 288
L+GC K ++ PKL E QG S K A LT+ + AE V
Sbjct: 188 LTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSV 234
>pdb|1YNT|F Chain F, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
pdb|1YNT|G Chain G, Structure Of The Immunodominant Epitope Displayed By The
Surface Antigen 1 (Sag1) Of Toxoplasma Gondii Complexed
To A Monoclonal Antibody
Length = 254
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 245 LSGCTAKRLLELAPKLVE---QGRLKSVKTANLTVDEAKGAAEMMYV 288
L+GC K ++ PKL E QG S K A LT+ + AE V
Sbjct: 186 LTGCNEKSFKDILPKLTENPWQGNASSDKGATLTIKKEAFPAESKSV 232
>pdb|2XSA|A Chain A, Ogoga Apostructure
pdb|2XSB|A Chain A, Ogoga Pugnac Complex
Length = 447
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 305 IGDGNV-GELTMALSDLLWEDMVAGPETQR 333
GDG V +L L DL W+ GPET R
Sbjct: 299 FGDGAVPSDLVALLCDLFWQPFALGPETTR 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,676,197
Number of Sequences: 62578
Number of extensions: 378462
Number of successful extensions: 689
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 37
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)