Query 019507
Match_columns 340
No_of_seqs 161 out of 1584
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 10:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02845 Branched-chain-amino- 100.0 1E-70 2.2E-75 528.5 37.7 329 7-338 4-335 (336)
2 PRK12479 branched-chain amino 100.0 3E-62 6.6E-67 463.6 33.3 279 46-330 5-289 (299)
3 TIGR01122 ilvE_I branched-chai 100.0 8.8E-62 1.9E-66 460.3 33.3 276 48-330 1-288 (298)
4 PRK08320 branched-chain amino 100.0 1.6E-61 3.6E-66 456.4 32.9 275 46-326 4-284 (288)
5 PRK06606 branched-chain amino 100.0 7E-61 1.5E-65 455.8 33.3 283 46-335 8-305 (306)
6 PRK06680 D-amino acid aminotra 100.0 1E-60 2.2E-65 450.6 32.4 274 46-327 4-283 (286)
7 cd01558 D-AAT_like D-Alanine a 100.0 8E-61 1.7E-65 447.5 30.9 266 48-321 1-270 (270)
8 PRK07650 4-amino-4-deoxychoris 100.0 1.4E-60 3.1E-65 448.9 32.5 274 47-327 2-277 (283)
9 PRK12400 D-amino acid aminotra 100.0 3.3E-60 7.1E-65 447.9 32.6 271 47-326 7-283 (290)
10 PRK13356 aminotransferase; Pro 100.0 5.3E-60 1.2E-64 445.7 33.2 273 46-329 8-286 (286)
11 TIGR01121 D_amino_aminoT D-ami 100.0 1.3E-59 2.8E-64 440.9 32.5 269 47-324 2-274 (276)
12 PRK07544 branched-chain amino 100.0 2.5E-59 5.5E-64 442.3 31.4 271 47-327 11-288 (292)
13 PRK07849 4-amino-4-deoxychoris 100.0 4.2E-58 9.2E-63 433.8 32.7 266 46-328 8-291 (292)
14 PRK06092 4-amino-4-deoxychoris 100.0 5.9E-58 1.3E-62 427.9 31.4 260 47-322 2-266 (268)
15 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 4.6E-57 1E-61 418.5 31.2 251 65-321 1-256 (256)
16 TIGR03461 pabC_Proteo aminodeo 100.0 5.9E-57 1.3E-61 419.5 31.0 255 48-318 1-260 (261)
17 cd01559 ADCL_like ADCL_like: 4 100.0 7.4E-57 1.6E-61 416.2 29.5 247 65-321 1-249 (249)
18 TIGR01123 ilvE_II branched-cha 100.0 1.1E-56 2.5E-61 428.1 31.6 272 48-330 1-303 (313)
19 PRK13357 branched-chain amino 100.0 1.6E-56 3.5E-61 433.4 32.1 281 48-338 42-353 (356)
20 PLN03117 Branched-chain-amino- 100.0 2.3E-56 4.9E-61 431.8 32.9 279 47-336 45-350 (355)
21 cd01557 BCAT_beta_family BCAT_ 100.0 2.4E-56 5.1E-61 419.4 31.4 257 61-327 2-278 (279)
22 PLN02782 Branched-chain amino 100.0 1.4E-55 3.1E-60 430.9 32.3 280 48-337 96-399 (403)
23 PRK09266 hypothetical protein; 100.0 1.2E-55 2.6E-60 411.9 30.1 259 44-323 2-260 (266)
24 PLN02259 branched-chain-amino- 100.0 4.7E-54 1E-58 418.3 31.1 273 47-331 81-378 (388)
25 PLN02883 Branched-chain amino 100.0 3.4E-53 7.3E-58 411.5 30.8 279 48-337 78-384 (384)
26 COG0115 IlvE Branched-chain am 100.0 5.6E-52 1.2E-56 390.7 32.1 272 46-329 3-283 (284)
27 KOG0975 Branched chain aminotr 100.0 4.4E-45 9.5E-50 342.4 24.2 279 27-330 63-371 (379)
28 PF01063 Aminotran_4: Aminotra 100.0 3.1E-44 6.6E-49 327.3 19.6 223 86-321 1-231 (231)
29 PRK07546 hypothetical protein; 100.0 1.2E-42 2.6E-47 313.5 25.4 202 72-300 4-209 (209)
30 PRK07101 hypothetical protein; 100.0 2.8E-34 6E-39 254.5 20.7 183 73-294 4-187 (187)
31 PF08222 HTH_CodY: CodY helix- 42.3 38 0.00082 24.1 3.3 26 246-274 14-39 (61)
32 COG1935 Uncharacterized conser 29.1 60 0.0013 26.4 2.9 43 244-291 5-51 (122)
33 KOG2708 Predicted metalloprote 28.2 33 0.00071 31.6 1.4 39 234-280 30-72 (336)
34 cd05569 PTS_IIB_fructose PTS_I 25.7 2.2E+02 0.0049 21.9 5.7 48 252-306 20-76 (96)
35 TIGR01565 homeo_ZF_HD homeobox 23.0 2.7E+02 0.0058 19.7 5.0 49 84-136 5-54 (58)
36 PF14347 DUF4399: Domain of un 23.0 81 0.0017 24.3 2.6 41 43-83 21-62 (87)
37 PF04322 DUF473: Protein of un 22.7 75 0.0016 26.1 2.4 43 244-291 5-51 (119)
38 KOG0378 40S ribosomal protein 20.7 2.2E+02 0.0048 26.3 5.2 35 204-238 201-237 (263)
No 1
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=1e-70 Score=528.45 Aligned_cols=329 Identities=62% Similarity=1.050 Sum_probs=295.2
Q ss_pred eecCCCccccccccChHHHHHHHHhhccCCCCCCccccccceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeec
Q 019507 7 EAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLY 86 (340)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~ 86 (340)
++||++++--|+. +..++++||+++|.+++..+++|||.+|+||++++++++.|+++||||+||||+|||||+++|+++
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~~~ 82 (336)
T PLN02845 4 VVPGSRTKVPPLL-SAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGHLY 82 (336)
T ss_pred CCCCCCCcCCccc-cHHHHHHHHHhhhccccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCEEc
Confidence 5799999888888 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCc-
Q 019507 87 ELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ- 165 (340)
Q Consensus 87 ~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (340)
+|++|++||.+||+.|+|+.|++.+++++.+.+++++++..+++||++|++|.+++++.+..++.+++++.+.+.++..
T Consensus 83 ~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (336)
T PLN02845 83 ELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQD 162 (336)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccccc
Confidence 9999999999999999999888999999999999999888889999999999877776555555777777766544333
Q ss_pred CCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCCCcc
Q 019507 166 CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKIL 245 (340)
Q Consensus 166 ~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~~iL 245 (340)
..+|+++.++++++.++.++++||+||+.+++++++|+++|+||+||+|++|+|+||+++||||+.+|++|+||++++||
T Consensus 163 ~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL 242 (336)
T PLN02845 163 RPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKIL 242 (336)
T ss_pred ccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCCcC
Confidence 25799998888777666678999999999999999999999999999999999999999999666569999999998899
Q ss_pred ccHHHHHHHHHhhhhhhCC--CcceEEEEeeCHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHH
Q 019507 246 SGCTAKRLLELAPKLVEQG--RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323 (340)
Q Consensus 246 ~GItR~~ll~la~~~~~~G--~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~ 323 (340)
+||||+.||++|+++.+.| + +|+|+.++++||.+|||+|+|||++||+||.+||++.++.|++||+|++|++.|++
T Consensus 243 ~GItR~~vlela~~~~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~~~ 320 (336)
T PLN02845 243 SGCTARRVLELAPRLVSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLLD 320 (336)
T ss_pred ccHHHHHHHHHHHhhhccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHH
Confidence 9999999999998742226 7 89999999999999999999999999999999999999988999999999999986
Q ss_pred HhhcCCCCcceeccC
Q 019507 324 DMVAGPETQRHCVSY 338 (340)
Q Consensus 324 ~i~~~~~~~~~~~~~ 338 (340)
....+.-+.+.|+-|
T Consensus 321 ~~~~~~~~~~~~~~~ 335 (336)
T PLN02845 321 DMRSGPPGVRTPVPY 335 (336)
T ss_pred HHhcCCCccceeccC
Confidence 555554455566655
No 2
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3e-62 Score=463.64 Aligned_cols=279 Identities=24% Similarity=0.395 Sum_probs=252.6
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~ 125 (340)
.+|+||++++.+.+.|+++||||+||||||||||+++|++|+|++|++||.+||+.|+|+.|++.+++++.+.++++.++
T Consensus 5 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~ 84 (299)
T PRK12479 5 YIYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKNE 84 (299)
T ss_pred EEEECCEEeEHHHCccccccchhheeeeEEEEEEEECCEecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999999999999999999999989999999999999999988
Q ss_pred CCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC---cCCCCcEEEEeeeecCC-CCC-CCccccCChhHHHHHH
Q 019507 126 CKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS---QCKEGVKVITSSIPMKP-RLF-ATVKNVNYLPNVLAKM 200 (340)
Q Consensus 126 ~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~gv~l~~~~~~~~~-~~~-~~~Kt~nyl~~~la~~ 200 (340)
..+++||+++++|.|.+++.+..+..+++++++.+.+.. .+.+|+++.++.+++.. +.+ +.+|++||+.++++++
T Consensus 85 ~~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ 164 (299)
T PRK12479 85 YADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKI 164 (299)
T ss_pred CCCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHH
Confidence 888999999999988888876655567888777765432 24679999888777653 223 6899999999999999
Q ss_pred HHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHH
Q 019507 201 EAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 279 (340)
Q Consensus 201 eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL 279 (340)
+|+++|+||+||+|++|+|+|++++|| |+++|++|+||+++ ++|+||||+.|+++|+++ |+ +|+|+.++++||
T Consensus 165 ea~~~g~de~l~ld~~g~v~E~s~sNl-f~v~~~~l~TP~l~~giL~GItR~~il~~~~~~---g~--~v~e~~i~~~~L 238 (299)
T PRK12479 165 EAAQAGVLEALMLNQQGYVCEGSGDNV-FVVKDGKVLTPPSYLGALEGITRNSVIELCERL---SI--PCEERPFTRHDV 238 (299)
T ss_pred HHHHcCCCEEEEEcCCCcEEECCceEE-EEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHc---CC--eEEEEeCCHHHH
Confidence 999999999999999999999999999 66689999999996 899999999999999998 98 999999999999
Q ss_pred hccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcCCC
Q 019507 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPE 330 (340)
Q Consensus 280 ~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~~~ 330 (340)
.+|||+|+|||++||+||.+||++.++.|++||++++|++.|++.+.....
T Consensus 239 ~~adevfltnS~~gi~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~~~~ 289 (299)
T PRK12479 239 YVADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGV 289 (299)
T ss_pred HhCCeeeeecCcccEEEEEEECCEEcCCCCcCHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999998888999999999999866655433
No 3
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=8.8e-62 Score=460.32 Aligned_cols=276 Identities=26% Similarity=0.387 Sum_probs=249.0
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeeeCC----eecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG----YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~ 123 (340)
|+||++++.+.+.|+++||||+||||+|||+|+++| ++|+|++|++||.+||+.|+|+.|++.++|++.+.+++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~ 80 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLRK 80 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999 9999999999999999999999888999999999999999
Q ss_pred cCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC--C--cCCCCcEEEEeeeecCCC-C-CCCccccC-ChhHH
Q 019507 124 SQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF--S--QCKEGVKVITSSIPMKPR-L-FATVKNVN-YLPNV 196 (340)
Q Consensus 124 ~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~gv~l~~~~~~~~~~-~-~~~~Kt~n-yl~~~ 196 (340)
++..+++||++|++|.+.+++.|.....+++++++.+.+. . .+.+|+++.++++++.++ . .+++|++| |+.++
T Consensus 81 ~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl~~v 160 (298)
T TIGR01122 81 NNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSL 160 (298)
T ss_pred cCCCCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhHHHH
Confidence 9888899999999998887776643346777777765432 1 135799999998877532 2 47999996 99999
Q ss_pred HHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeC
Q 019507 197 LAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLT 275 (340)
Q Consensus 197 la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~ 275 (340)
+++++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++ ++|+||||+.|+++|+++ |+ +|+|+.++
T Consensus 161 ~a~~~a~~~g~de~l~ld~~g~v~E~s~sNl-f~v~~~~l~TP~~~~~~L~GItR~~il~la~~~---g~--~v~e~~i~ 234 (298)
T TIGR01122 161 LAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIVKDGVLFTPPVTSSILPGITRDTVITLAKEL---GI--EVVEQPIS 234 (298)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEECCceEE-EEEECCEEECCCCCCCcCcchHHHHHHHHHHHc---CC--cEEEEeCC
Confidence 9999999999999999999999999999999 66799999999995 899999999999999998 98 99999999
Q ss_pred HHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcCCC
Q 019507 276 VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPE 330 (340)
Q Consensus 276 ~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~~~ 330 (340)
++||.+|||+|+|||++||+||++||++.|+.|++||++++|++.|. .++.+..
T Consensus 235 ~~eL~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~~~~-~~~~~~~ 288 (298)
T TIGR01122 235 REELYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEAFF-DLVTGGT 288 (298)
T ss_pred HHHHhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHHHHH-HHHcCCC
Confidence 99999999999999999999999999999988889999999999998 4666543
No 4
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.6e-61 Score=456.37 Aligned_cols=275 Identities=28% Similarity=0.459 Sum_probs=248.6
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~ 125 (340)
.+|+||++++...+.++++||||+||||||||+++++|++++|++|++||.+||+.|+|+.|++.+++++.+.+++++++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~~g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~ 83 (288)
T PRK08320 4 LIYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKNN 83 (288)
T ss_pred EEEECCEEEEHHHCcccccchhhhhcceEEEEEEEECCEeecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999999999999999999999999999999989999999999999999988
Q ss_pred CCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC-C--cCCCCcEEEEeeeecCC-C-CCCCccccCChhHHHHHH
Q 019507 126 CKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-S--QCKEGVKVITSSIPMKP-R-LFATVKNVNYLPNVLAKM 200 (340)
Q Consensus 126 ~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~gv~l~~~~~~~~~-~-~~~~~Kt~nyl~~~la~~ 200 (340)
..+++||++|++|.|.+++.|..++.+.+++++.+.+. . .+.+|+++.++.+.+.. + ..+++|++||+.++++++
T Consensus 84 ~~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v~a~~ 163 (288)
T PRK08320 84 LRDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILAKI 163 (288)
T ss_pred CCCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHHHHHH
Confidence 88899999999998888887766566677766655332 1 23579999888777653 2 336899999999999999
Q ss_pred HHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHH
Q 019507 201 EAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 279 (340)
Q Consensus 201 eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL 279 (340)
+|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||
T Consensus 164 ~A~~~g~de~L~ld~~g~v~E~s~sNl-f~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~---g~--~v~e~~l~~~dL 237 (288)
T PRK08320 164 EANLAGVDEAIMLNDEGYVAEGTGDNI-FIVKNGKLITPPTYAGALEGITRNAVIEIAKEL---GI--PVREELFTLHDL 237 (288)
T ss_pred HHHHcCCCEEEEECCCCeEEEcCcEEE-EEEECCEEECCCCcCCCCcCHHHHHHHHHHHHc---CC--eEEEEECCHHHH
Confidence 999999999999999999999999999 66689999999995 899999999999999998 98 999999999999
Q ss_pred hccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhh
Q 019507 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMV 326 (340)
Q Consensus 280 ~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~ 326 (340)
.+|||+|+|||++||+||++||++.++.+++||++++|++.|.+.+.
T Consensus 238 ~~ade~f~~ns~~gv~pV~~i~~~~~~~~~~g~~~~~l~~~~~~~~~ 284 (288)
T PRK08320 238 YTADEVFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKLLEEFRELTK 284 (288)
T ss_pred HhCCEEEEecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888899999999999976554
No 5
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=7e-61 Score=455.76 Aligned_cols=283 Identities=25% Similarity=0.340 Sum_probs=249.7
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCe----ecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY----LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 121 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~----~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li 121 (340)
.+|+||++++.+.+.|+++||||+||||||||+|+++|+ +++|++|++||.+||+.|+|+.|++.++|++.+.+++
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 8 YIWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred cEEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCeeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998 9999999999999999999998889999999999999
Q ss_pred HHcCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC-C---cCCCCcEEEEeeeecCCC--CCCCccc-cCChh
Q 019507 122 AASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-S---QCKEGVKVITSSIPMKPR--LFATVKN-VNYLP 194 (340)
Q Consensus 122 ~~~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~gv~l~~~~~~~~~~--~~~~~Kt-~nyl~ 194 (340)
++++..+++||++|++|.+.+++.+.. ..+.+++.+.+.+. . ...+|+++.++++.+..+ .++++|+ +||+.
T Consensus 88 ~~~~~~~~~ir~~v~rg~~~~g~~~~~-~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~ 166 (306)
T PRK06606 88 RKNNLKSAYIRPLVFVGDEGLGVRPHG-LPTDVAIAAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLN 166 (306)
T ss_pred HhcCCCCEEEEEEEEecCCccCcCCCC-CCceEEEEEeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhccHH
Confidence 999888899999999998877776543 24566666655331 1 235799999988777532 3578895 69999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEe
Q 019507 195 NVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTAN 273 (340)
Q Consensus 195 ~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~ 273 (340)
+++++++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++ +||+||||+.|+++|+++ |+ +|+|+.
T Consensus 167 ~vla~~ea~~~G~de~l~l~~~g~v~E~~~sNl-f~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~---g~--~v~e~~ 240 (306)
T PRK06606 167 SILAKTEARRNGYDEALLLDVEGYVSEGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDL---GI--EVIERR 240 (306)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCEEEcCceEE-EEEECCEEECCCCcCCcCCCHHHHHHHHHHHHc---CC--cEEEEe
Confidence 999999999999999999999999999999999 56699999999996 799999999999999998 98 999999
Q ss_pred eCHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcC---CCCccee
Q 019507 274 LTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG---PETQRHC 335 (340)
Q Consensus 274 i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~---~~~~~~~ 335 (340)
++++||.+|||+|+|||++||+||.+||++.++.|++||++++|++.|.+.+... ..+|.|+
T Consensus 241 i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T PRK06606 241 ITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQSAYFDIVRGRTEKYAHWLTP 305 (306)
T ss_pred CCHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 9999999999999999999999999999999988889999999999998544432 2256654
No 6
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1e-60 Score=450.59 Aligned_cols=274 Identities=28% Similarity=0.404 Sum_probs=243.8
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~ 125 (340)
.+|+||++++.+.+.|+++||||+||||||||+|+++|++++|++|++||.+||+.|+|+.|++.+++++.+.+++++++
T Consensus 4 ~~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~ 83 (286)
T PRK06680 4 IAYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELIRRNR 83 (286)
T ss_pred EEEECCEEEEHHHCcccccccccceeeEEEEEEEEECCEEechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Confidence 37899999999999999999999999999999999999999999999999999999999988899999999999999998
Q ss_pred CCCceEEEEEecCCCCCccC-CCCCCCceEEEEEEcCCC-C---cCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHH
Q 019507 126 CKKGTLRFWLTAGPGDFLLS-PAGCPTSAFYAVVIDDDF-S---QCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKM 200 (340)
Q Consensus 126 ~~~~~lRi~vt~G~g~~~~~-~~~~~~~~~~~~~~~~~~-~---~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~ 200 (340)
..++.+|+++++|.+.+++. |..+..+.+++++.+.+. . .+.+|+++.+++.. ++..+++|++||+.++++++
T Consensus 84 ~~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~~--~~~~~~~Ks~nyl~~vla~~ 161 (286)
T PRK06680 84 VREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPDN--RWKRCDIKSVGLLPNVLAKQ 161 (286)
T ss_pred CCceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecCC--CCCCCCcchhccHHHHHHHH
Confidence 88899999999998766554 333456778777776542 1 13679888766443 23457899999999999999
Q ss_pred HHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHH
Q 019507 201 EAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 279 (340)
Q Consensus 201 eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL 279 (340)
+|+++|+||+||+| +|+|+|++++||||+.+||+|+|||++ +||+||||+.++++|+++ |+ +|+|+.++++||
T Consensus 162 eA~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~---g~--~v~e~~i~~~el 235 (286)
T PRK06680 162 AAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKEL---GL--EVEERPFTLQEA 235 (286)
T ss_pred HHHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHc---CC--eEEEEcCCHHHH
Confidence 99999999999999 999999999999443389999999986 899999999999999998 98 999999999999
Q ss_pred hccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhc
Q 019507 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 327 (340)
Q Consensus 280 ~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~ 327 (340)
.+|||+|+|||++||+||.+||++.++.+++||++++|++.|.+.+..
T Consensus 236 ~~ade~f~~ns~~gi~pV~~id~~~~~~~~~g~~~~~L~~~~~~~~~~ 283 (286)
T PRK06680 236 YAAREAFITAASSFVFPVVQIDGKQIGNGKPGPIAKRLREAYEEFARL 283 (286)
T ss_pred hcCcEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888999999999999865543
No 7
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=8e-61 Score=447.55 Aligned_cols=266 Identities=32% Similarity=0.468 Sum_probs=240.4
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCK 127 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~ 127 (340)
|+||++++.+.+.++++||||+||||+|||||+++|++++|++|++||.+||+.|+|+.|++.+++++.+.++++.++..
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~~ 80 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKNEGG 80 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEECCEEecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 67999999999999999999999999999999999999999999999999999999988889999999999999998878
Q ss_pred CceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC---CcCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHHH
Q 019507 128 KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF---SQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAED 204 (340)
Q Consensus 128 ~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~~ 204 (340)
++.+|+.+++|.+++++.+..+..+.+++++.+.+. ..+.+|+++.++++++. ..+++|++||+.+++++++|++
T Consensus 81 ~~~~~~~~t~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~~~~~--~~~~~K~~ny~~~~~a~~~a~~ 158 (270)
T cd01558 81 EGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVPDIRW--LRCDIKSLNLLNNVLAKQEAKE 158 (270)
T ss_pred CceEEEEEEeCCCccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEeccccc--CCCCchhhccHHHHHHHHHHHH
Confidence 889999999998777766554556777777665442 12467999888766543 4568999999999999999999
Q ss_pred cCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccc
Q 019507 205 KGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 283 (340)
Q Consensus 205 ~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~ad 283 (340)
+|+||+||+|++|+|+|++++|| |++++|+|+||+++ ++|+||||+.|+++|+++ |+ +|+|+.++++||.+||
T Consensus 159 ~g~de~l~ld~~g~v~E~~~sNi-f~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~---g~--~v~e~~i~~~eL~~ad 232 (270)
T cd01558 159 AGADEAILLDADGLVTEGSSSNV-FIVKNGVLVTPPLDNGILPGITRATVIELAKEL---GI--PVEERPFSLEELYTAD 232 (270)
T ss_pred cCCCEEEEEcCCCEEEEcCcEEE-EEEECCEEECCCCcCCCCCChHHHHHHHHHHHc---CC--eEEEEeCCHHHHhhCC
Confidence 99999999999999999999999 66689999999996 899999999999999988 98 9999999999999999
Q ss_pred eeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHH
Q 019507 284 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 321 (340)
Q Consensus 284 EvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~ 321 (340)
|+|+|||++||+||.+||++.++.+++||++++|++.|
T Consensus 233 e~fl~ns~~gv~PV~~i~~~~~~~~~~~~~~~~l~~~~ 270 (270)
T cd01558 233 EVFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270 (270)
T ss_pred EEEEecCcccEEEEEEECCeECCCCCCCHHHHHHHHhC
Confidence 99999999999999999999998888999999998764
No 8
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.4e-60 Score=448.89 Aligned_cols=274 Identities=24% Similarity=0.289 Sum_probs=240.8
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 126 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~ 126 (340)
+|+||++++.+.+.++++||||+||||+|||||+++|++++|++|++||.+||+.|+|+.|++.+.+++.+.+++++++.
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~ 81 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL 81 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999888999999999999998888
Q ss_pred CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCcCCCCcEEEEeeeecC-CCCCCCccccCChhHHHHHHHHHHc
Q 019507 127 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAEDK 205 (340)
Q Consensus 127 ~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~~~~~~-~~~~~~~Kt~nyl~~~la~~eA~~~ 205 (340)
.+++||++|++|.+++++.+.....|.+++++.+.+..........+.+...+. ++.++++|++||+.+++++++|++.
T Consensus 82 ~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~y~~~v~a~~~a~~~ 161 (283)
T PRK07650 82 ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVLKQRRNTPEGAFRLKSHHYLNNILGKREIGND 161 (283)
T ss_pred CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEEEEEecCCCCCcchhHHhHHHHHHHHHHHHHc
Confidence 889999999999777776655445677777776543222111222222333333 4457899999999999999999999
Q ss_pred CCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccce
Q 019507 206 GASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAE 284 (340)
Q Consensus 206 G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adE 284 (340)
|+||+||+|++|+|+|++++|| |++++|+|+||+++ |||+||||+.++++|+++ |+ +|+|+.++++||..|||
T Consensus 162 g~de~llln~~G~v~E~s~sNi-f~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~---g~--~v~e~~i~~~dL~~ade 235 (283)
T PRK07650 162 PNKEGIFLTEEGYVAEGIVSNL-FWVKGDIVYTPSLETGILNGITRAFVIKVLEEL---GI--EVKEGFYTKEELLSADE 235 (283)
T ss_pred CCCeEEEECCCCeEEEcCceEE-EEEECCEEEcCCCcCCCcccHHHHHHHHHHHHc---CC--eEEEEecCHHHHhhCCE
Confidence 9999999999999999999999 66699999999996 899999999999999998 98 99999999999999999
Q ss_pred eeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhc
Q 019507 285 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 327 (340)
Q Consensus 285 vfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~ 327 (340)
+|+|||++||+||.+||++.++ |++||++++|+++|.+.+..
T Consensus 236 ifl~ns~~gv~pV~~i~~~~~~-g~~g~~~~~l~~~~~~~~~~ 277 (283)
T PRK07650 236 VFVTNSIQEIVPLTRIEERDFP-GKVGMVTKRLQNLYEMQREK 277 (283)
T ss_pred eeeecCcccEEEEEEECCEEeC-CCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999995 68999999999999876665
No 9
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=3.3e-60 Score=447.93 Aligned_cols=271 Identities=25% Similarity=0.416 Sum_probs=237.8
Q ss_pred ceeCCEEeCCC--cceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc
Q 019507 47 SIFGGIILDPA--MMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 124 (340)
Q Consensus 47 ~~~nG~~~~~~--~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~ 124 (340)
+|+||++++.+ .+.|+++||||+||||||||||+++|++++|++|++||.+||+.|+|+.|++.+++++.+.++++++
T Consensus 7 ~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~~G~~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~~~~~~~ 86 (290)
T PRK12400 7 VLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLYKLIENN 86 (290)
T ss_pred EEECCEEechHHcCceeccccchhhhcceEEEEEEEECCEecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999988 4559999999999999999999999999999999999999999999998999999999999999998
Q ss_pred CC-CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC--cCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHH
Q 019507 125 QC-KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS--QCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKME 201 (340)
Q Consensus 125 ~~-~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~e 201 (340)
+. .+++||+.+++|.+.+++.+.....|++++.+.+.+.. ...+|+++...... ++..+++||+||+.+++++++
T Consensus 87 ~~~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Kt~nyl~~vla~~e 164 (290)
T PRK12400 87 NFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEPDT--RWLRCDIKSLNLLPNILAATK 164 (290)
T ss_pred CCCCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECCCC--CccCCCCcccccHHHHHHHHH
Confidence 75 68899999999877665544333456666655433221 13578887654322 344578999999999999999
Q ss_pred HHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHh
Q 019507 202 AEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAK 280 (340)
Q Consensus 202 A~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~ 280 (340)
|+++|+||+||+| +|+|+||+++|| |+++||+|+|||++ |+|+||||+.|+++|+++ |+ +|+|+.++++||.
T Consensus 165 a~~~g~deaL~l~-~g~v~E~t~sNi-f~v~~~~l~TPpl~~g~L~GItR~~llela~~~---gi--~v~E~~i~~~eL~ 237 (290)
T PRK12400 165 AERKGCKEALFVR-NGTVTEGSHSNF-FLIKNGTLYTHPANHLILNGIIRQYVLSLAKTL---RI--PVQEELFSVRDVY 237 (290)
T ss_pred HHHcCCCEEEEEc-CCEEEEcCceEE-EEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHc---CC--cEEEEeCCHHHHH
Confidence 9999999999996 899999999999 66799999999996 899999999999999998 98 9999999999999
Q ss_pred ccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhh
Q 019507 281 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMV 326 (340)
Q Consensus 281 ~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~ 326 (340)
+|||+|+|||++||+||++||++.+++|++||+|++|++.|.+.+.
T Consensus 238 ~Adevfltns~~gv~PV~~i~~~~~~~~~~g~~t~~l~~~~~~~~~ 283 (290)
T PRK12400 238 QADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKMLQRSFSQSLL 283 (290)
T ss_pred hCCeeeEccCcceEEEEEEECCEECCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888999999999999986543
No 10
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=5.3e-60 Score=445.69 Aligned_cols=273 Identities=22% Similarity=0.272 Sum_probs=238.1
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~ 125 (340)
.+|+||++++++.+.|+++||||+||||||||+|+++|++++|++|++||.+||+.|+|+.|++.++|++.+.+++++++
T Consensus 8 ~~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i~~~~ 87 (286)
T PRK13356 8 WTFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGLKRFD 87 (286)
T ss_pred eEEECCEEcchhhcccccccchhhhcceeEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999999999999999999999888899999999999999886
Q ss_pred CC-CceEEEEEecCCCCC-ccCCCCCCCceEEEEEEcCCCCcCCCCcEEEEeeeecCCC--CCCCcc-ccCChhHHHHHH
Q 019507 126 CK-KGTLRFWLTAGPGDF-LLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPR--LFATVK-NVNYLPNVLAKM 200 (340)
Q Consensus 126 ~~-~~~lRi~vt~G~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~~~~~~~~--~~~~~K-t~nyl~~~la~~ 200 (340)
.. +++||++|++|.+.. ++.+.. ..+.+.+.+.+.|.. ..+|+++.++++.+..+ ..+++| ++||+.++++++
T Consensus 88 ~~~~~~ir~~v~rg~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ 165 (286)
T PRK13356 88 PDTALYIRPMYWAEDGFASGVAPDP-ESTRFALCLEEAPMP-EPTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNARALR 165 (286)
T ss_pred CCCcEEEEEEEEeccCcccCcCCCc-CCceEEEEEEccCCC-CCCcEEEEEeeeecCCCCCCCccceeccchHHHHHHHH
Confidence 54 689999999987654 332322 133444444433332 23799999988877533 235688 668999999999
Q ss_pred HHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHH
Q 019507 201 EAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 279 (340)
Q Consensus 201 eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL 279 (340)
+|+++|+||+||+|++|+|+|++++|| |+++|++|+||+++ +||+||||+.|+++|+++ |+ +|+|+.++++||
T Consensus 166 ea~~~g~deal~ld~~G~v~E~~~sNl-f~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~---gi--~v~e~~i~~~eL 239 (286)
T PRK13356 166 EARSRGFDNALVLDMLGNVAETATSNV-FMVKDGVVFTPVPNGTFLNGITRQRVIALLRED---GV--TVVETTLTYEDF 239 (286)
T ss_pred HHHHcCCCEEEEECCCCCEEEcCceEE-EEEECCEEEcCCCCCCcccCHHHHHHHHHHHHc---CC--eEEEEecCHHHH
Confidence 999999999999999999999999999 66699999999985 799999999999999998 98 999999999999
Q ss_pred hccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcCC
Q 019507 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGP 329 (340)
Q Consensus 280 ~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~~ 329 (340)
.+|||+|+|||++||+||++||++.++ +||++++|+++|.+.++.|+
T Consensus 240 ~~adevfltns~~gi~PV~~id~~~~~---~g~~~~~l~~~~~~~~~~~~ 286 (286)
T PRK13356 240 LEADEVFSTGNYSKVVPVTRFDDRSLQ---PGPVTRRARELYWDWAHGGR 286 (286)
T ss_pred HhcCceEEecChheEEEEEEECCEEec---CChHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999994 58999999999998777763
No 11
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=1.3e-59 Score=440.90 Aligned_cols=269 Identities=30% Similarity=0.397 Sum_probs=238.0
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 126 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~ 126 (340)
+|+||++++.+++.++++||||+||||||||||+++|++|+|++|++||.+||+.|+|+.|++.+.+++.|.+++++++.
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~~g~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~~~ 81 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKNNL 81 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEECCEEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999888999999999999999988
Q ss_pred CCceEEEEEecCCCCCccC-CCCCCCceEEEEEEcCCCC--cCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHH
Q 019507 127 KKGTLRFWLTAGPGDFLLS-PAGCPTSAFYAVVIDDDFS--QCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAE 203 (340)
Q Consensus 127 ~~~~lRi~vt~G~g~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~ 203 (340)
.+++||+.+++|.+..++. |..+..+.+++++.+.+.. .+.+|+++..+...+ +..+++|++||+.+++++++|+
T Consensus 82 ~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~--~~~~~~K~~nyl~~vla~~eA~ 159 (276)
T TIGR01121 82 NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVEDIR--WLRCDIKSLNLLGNVLAKQEAH 159 (276)
T ss_pred CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecCCC--ccCCCcchhhhHHHHHHHHHHH
Confidence 8999999999987655543 3323345666666543322 236788876654332 3357899999999999999999
Q ss_pred HcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhcc
Q 019507 204 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 282 (340)
Q Consensus 204 ~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~a 282 (340)
++|+||+||++ +|+|+||+++|| |+++||+|+|||++ ++|+||||+.|+++|+++ |+ +|+|+.++++||.+|
T Consensus 160 ~~g~de~l~~~-~g~v~E~~~sNi-f~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~---g~--~v~e~~i~~~el~~a 232 (276)
T TIGR01121 160 EKGAYEAILHR-GGTVTEGSSSNV-YGIKDGVLYTHPANNLILNGITRMVILACAEEN---GI--PVKEEPFTKEELLNA 232 (276)
T ss_pred HcCCCEEEEec-CCeEEecCceeE-EEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHC---CC--eEEEEeCCHHHHhcC
Confidence 99999999996 899999999999 66799999999995 899999999999999998 98 999999999999999
Q ss_pred ceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHH
Q 019507 283 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWED 324 (340)
Q Consensus 283 dEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~ 324 (340)
||+|+|||++||+||.+||++.++++++||+|++|++.|.+.
T Consensus 233 de~fltns~~gi~PV~~id~~~~~~~~~g~~~~~L~~~~~~~ 274 (276)
T TIGR01121 233 DEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQLQKAFEEK 274 (276)
T ss_pred CEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999998888999999999999754
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.5e-59 Score=442.32 Aligned_cols=271 Identities=20% Similarity=0.233 Sum_probs=238.7
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 126 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~ 126 (340)
+|+||++++.+.+.++++||||+||||||||+|+++|++++|++|++||.+||+.|+|+.|++.+.+.+.+.++++.++.
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~ 90 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLAANGL 90 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEeeCCcccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999888999999999999999988
Q ss_pred CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCC--CC--cCCCCcEEEEeeeecCCCC-C-CCcc-ccCChhHHHHH
Q 019507 127 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD--FS--QCKEGVKVITSSIPMKPRL-F-ATVK-NVNYLPNVLAK 199 (340)
Q Consensus 127 ~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~gv~l~~~~~~~~~~~-~-~~~K-t~nyl~~~la~ 199 (340)
.+++||+++++|.+.+++.+... .+.+++.+.+.+ +. ...+|+++.++++++..+. + +.+| +.||+.+++++
T Consensus 91 ~~~~ir~~v~rg~~~~g~~~~~~-~~~~~v~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~~vla~ 169 (292)
T PRK07544 91 TDAYVRPVAWRGSEMMGVSAQQN-KIHLAIAAWEWPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISK 169 (292)
T ss_pred CCeEEEEEEEecCCCCCcCCCCC-CcEEEEEEeccccccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHHHHHHH
Confidence 88999999999988777654432 344444444322 11 2357999998888775332 2 3457 55899999999
Q ss_pred HHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHH
Q 019507 200 MEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEA 279 (340)
Q Consensus 200 ~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL 279 (340)
++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++++|+||||+.|+++|+++ |+ +|+|++++++||
T Consensus 170 ~~A~~~G~deal~ld~~g~V~E~~~sNl-f~v~~~~l~TP~~~~~L~GItR~~vl~~a~~~---g~--~v~e~~i~~~eL 243 (292)
T PRK07544 170 HAAEAKGYADALMLDYRGYVAEATGANI-FFVKDGVIHTPTPDCFLDGITRQTVIELAKRR---GI--EVVERHIMPEEL 243 (292)
T ss_pred HHHHHcCCCeEEEECCCCCEEEcCceEE-EEEECCEEECCCCcccccchhHHHHHHHHHHc---CC--eEEEEecCHHHH
Confidence 9999999999999999999999999999 56699999999987799999999999999998 98 999999999999
Q ss_pred hccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhc
Q 019507 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 327 (340)
Q Consensus 280 ~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~ 327 (340)
.+|||+|+|||++||+||++||++.|+ +||++++|++.|.+.+..
T Consensus 244 ~~adevfltnS~~gi~PV~~i~~~~~~---~g~~~~~l~~~~~~~~~~ 288 (292)
T PRK07544 244 AGFSECFLTGTAAEVTPVSEIGEYRFT---PGAITRDLMDDYEALVRP 288 (292)
T ss_pred hhcCceeecCccceEEEEEEEeeEEeC---CChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999995 689999999999765543
No 13
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=4.2e-58 Score=433.79 Aligned_cols=266 Identities=27% Similarity=0.342 Sum_probs=236.3
Q ss_pred cceeCC-----EEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 019507 46 SSIFGG-----IILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120 (340)
Q Consensus 46 ~~~~nG-----~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l 120 (340)
.+|+|| ++++++++.||++||||+||||+||||++++|++++|++|++||.+||+.|+|+.| +.+++.+++.++
T Consensus 8 ~~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~~g~i~~l~~Hl~RL~~Sa~~l~i~~~-~~~~l~~~i~~~ 86 (292)
T PRK07849 8 VVTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEP-DLDRWRRAVELA 86 (292)
T ss_pred EEEECCCCccceEechHHCCccchhcchhccceEEEEEEEECCEECCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Confidence 479999 99999999999999999999999999999999999999999999999999999877 889999999999
Q ss_pred HHHc--CCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC---cCCCCcEEEEeeeec-------CCCCCCCcc
Q 019507 121 TAAS--QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS---QCKEGVKVITSSIPM-------KPRLFATVK 188 (340)
Q Consensus 121 i~~~--~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~gv~l~~~~~~~-------~~~~~~~~K 188 (340)
++++ +..+++||+++++|.+..+ .+.+++.+.+.+.. ...+|+++.+++.+. .++.++++|
T Consensus 87 v~~~~~~~~~~~iRl~v~~g~~~~~-------~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~K 159 (292)
T PRK07849 87 IEEWRAPEDEAALRLVYSRGRESGG-------APTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAK 159 (292)
T ss_pred HHHhcCCCCCeEEEEEEeCCCCCCC-------CCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccc
Confidence 9887 4578899999999865421 35566666654321 246789988875432 122467899
Q ss_pred ccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcc
Q 019507 189 NVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLK 267 (340)
Q Consensus 189 t~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~ 267 (340)
++||+.+++++++|+++|+||+||+|++|+|+||+++|| |+++||+|+||+++ |||+||||+.|+++|+++ |+
T Consensus 160 t~ny~~~i~a~~~A~~~g~dd~L~ld~~G~v~E~s~~Ni-f~~~~g~l~TP~~~~giL~GItR~~vie~~~~~---g~-- 233 (292)
T PRK07849 160 TLSYAVNMAALRYAARRGADDVIFTSTDGYVLEGPTSTV-VIATDDRLLTPPPWYGILPGTTQAALFEVAREK---GW-- 233 (292)
T ss_pred hhhhHHHHHHHHHHHHcCCCEEEEEcCCCcEEECCceEE-EEEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--
Confidence 999999999999999999999999999999999999999 66799999999996 899999999999999988 98
Q ss_pred eEEEEeeCHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcC
Q 019507 268 SVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 328 (340)
Q Consensus 268 ~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~ 328 (340)
+|+|+.++++||.+|||+|+|||++||+||.+||+++++. ||+|++|++.|++++..+
T Consensus 234 ~v~er~i~~~eL~~Adevfltns~~gi~pV~~id~~~~~~---~~~~~~l~~~~~~~~~~~ 291 (292)
T PRK07849 234 DCEYRALRPADLFAADGVWLVSSVRLAARVHTLDGRPLPR---DPLADELTELVDAAIVSD 291 (292)
T ss_pred ceEEEECCHHHHhhCCEEEEecCcceEEEEEEECCEECCC---ChHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999964 699999999999887654
No 14
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=5.9e-58 Score=427.92 Aligned_cols=260 Identities=24% Similarity=0.331 Sum_probs=229.1
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 126 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~ 126 (340)
+|+||++ .+.+|++||||+||||+|||+|+++|++++|++|++||.+||+.|+|+.| +.+.+.+.+.+++. +.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~~~~~~l~~~~~--~~ 74 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLD-DWAQLEQEMKQLAA--EL 74 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEECCeeccHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHh--hC
Confidence 6899996 56799999999999999999999999999999999999999999999766 66788888877763 34
Q ss_pred CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCc---CCCCcEEEEeeeecC-CCCCCCccccCChhHHHHHHHH
Q 019507 127 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ---CKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEA 202 (340)
Q Consensus 127 ~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gv~l~~~~~~~~-~~~~~~~Kt~nyl~~~la~~eA 202 (340)
.++++|++|++|.+++++.+..++.+.+++++.+.+... +.+|+++.+++.++. ++.++++||+||+.+++++++|
T Consensus 75 ~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A 154 (268)
T PRK06092 75 ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCPTRLGRNPLLAGIKHLNRLEQVLIRAEL 154 (268)
T ss_pred CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEeccccCCCCCccCcchhhhHHHHHHHHHH
Confidence 678999999999777777666556677777766543222 357999988877653 4557889999999999999999
Q ss_pred HHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhc
Q 019507 203 EDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 281 (340)
Q Consensus 203 ~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~ 281 (340)
+++|+||+||+|++|+|+|++++|| |+++||+|+||+++ ++|+||||+.++++|+++ |+ +|+|+.++++||.+
T Consensus 155 ~~~g~de~l~l~~~g~v~E~s~sNi-f~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~---g~--~v~e~~i~~~dL~~ 228 (268)
T PRK06092 155 EQTEADEALVLDSEGWVIECCAANL-FWRKGGVVYTPDLDQCGVAGVMRQFILELLAQS---GY--PVVEVDASLEELLQ 228 (268)
T ss_pred HhcCCCEEEEECCCCCEEEccceEE-EEEECCEEECCCccccCcccHHHHHHHHHHHHc---CC--eEEEEECCHHHHhh
Confidence 9999999999999999999999999 66799999999996 789999999999999988 98 99999999999999
Q ss_pred cceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHH
Q 019507 282 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLW 322 (340)
Q Consensus 282 adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~ 322 (340)
|||+|+|||++||+||.+||++.++ +||++++|++.+.
T Consensus 229 adevfltns~~gi~pV~~id~~~~~---~g~~~~~l~~~~~ 266 (268)
T PRK06092 229 ADEVFICNSLMPVWPVRAIGETSYS---SGTLTRYLQPLCE 266 (268)
T ss_pred CCEEEEeCCcceEEEEEEECCEEcc---chHHHHHHHHHHh
Confidence 9999999999999999999999995 4799999999886
No 15
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=4.6e-57 Score=418.50 Aligned_cols=251 Identities=36% Similarity=0.525 Sum_probs=228.4
Q ss_pred CcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCcc
Q 019507 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLL 144 (340)
Q Consensus 65 drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~ 144 (340)
||||+||||+|||||+++|++++|++|++||.+||+.|+|+.|++.+++++.+.++++.++..+++||++|++|.+.+++
T Consensus 1 drg~~~GdgvFEt~r~~~g~~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ir~~v~~g~~~~~~ 80 (256)
T cd00449 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNGASLYIRPLLTRGVGGLGV 80 (256)
T ss_pred CceeeccceEEEEEEEcCcEEEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEEEEEecccccCC
Confidence 79999999999999999999999999999999999999998788999999999999998888889999999999877777
Q ss_pred CCCCCCCceEEEEEEcCCC--CcCCCCcEEEEeeeecC--CCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEE
Q 019507 145 SPAGCPTSAFYAVVIDDDF--SQCKEGVKVITSSIPMK--PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVA 220 (340)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~--~~~~~gv~l~~~~~~~~--~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~ 220 (340)
.+..+..+.+++++.+.+. ....+|+++.+++..+. ++.++++|++||+.+++++++|+++|+||+||+|++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g~v~ 160 (256)
T cd00449 81 APPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVT 160 (256)
T ss_pred CCCCCCCcEEEEEEeeccccccccCCCeEEEEeeeEEeCCCCCCccchhhCCHHHHHHHHHHHHcCCCEEEEECCCCcEE
Confidence 6555567788877765443 23468999998887763 5678899999999999999999999999999999999999
Q ss_pred ecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccceeeeecCccCeEEEEE
Q 019507 221 EGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITV 299 (340)
Q Consensus 221 E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~ 299 (340)
|++++|| |++++++|+||+++ |+|+||||+.++++|+++ |+ +|+|+.++++||.+|||+|+|||++||+||++
T Consensus 161 E~s~sNl-f~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~---g~--~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~ 234 (256)
T cd00449 161 EGSASNV-FIVKDGELVTPPLDGGILPGITRDSVIELAKEL---GI--KVEERPISLDELYAADEVFLTGTAAEVTPVTE 234 (256)
T ss_pred EcCceEE-EEEECCEEEeCCCCCCcCcchhHHHHHHHHHHc---CC--eEEEEecCHHHHhhCCEEEEccccceEEEEEE
Confidence 9999999 66799999999996 799999999999999998 98 99999999999999999999999999999999
Q ss_pred ECCeecCCCCchHHHHHHHHHH
Q 019507 300 WDEQPIGDGNVGELTMALSDLL 321 (340)
Q Consensus 300 id~~~~~~g~~gp~t~~L~~~~ 321 (340)
||++.++.+++||++++|++.|
T Consensus 235 i~~~~~~~~~~~~~~~~l~~~~ 256 (256)
T cd00449 235 IDGRGIGDGKPGPVTRKLRELL 256 (256)
T ss_pred ECCeecCCCCCCHHHHHHHHhC
Confidence 9999998778999999998864
No 16
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=5.9e-57 Score=419.54 Aligned_cols=255 Identities=26% Similarity=0.396 Sum_probs=225.1
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCK 127 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~ 127 (340)
|+||+. .+.++++||||+||||||||||+++|++++|++|++||.+||+.|+|+.| +.+++++.+.++++.+ .
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~~G~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~~~~~~~~~~~--~ 73 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLP-DWDALREEMAQLAAGY--S 73 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEECCEeccHHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhC--C
Confidence 679995 66799999999999999999999999999999999999999999999877 8999999999998875 4
Q ss_pred CceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC---cCCCCcEEEEeeeecC-CCCCCCccccCChhHHHHHHHHH
Q 019507 128 KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS---QCKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAE 203 (340)
Q Consensus 128 ~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~gv~l~~~~~~~~-~~~~~~~Kt~nyl~~~la~~eA~ 203 (340)
++++|++|++|.+++++.+..++.+.+++.+.+.+.. ..++|+++.+++.++. ++.++++|++||+.+++++++|+
T Consensus 74 ~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Kt~~y~~~~~a~~~A~ 153 (261)
T TIGR03461 74 LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSPVRLGRNPLLAGIKHLNRLEQVLIKAELE 153 (261)
T ss_pred CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEeccccCCCCCCcCccccccHHHHHHHHHhh
Confidence 7899999999877666655444566776666554321 1357999888877653 45678899999999999999999
Q ss_pred HcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhcc
Q 019507 204 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 282 (340)
Q Consensus 204 ~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~a 282 (340)
++|+||+||+|++|+|+|++++|| |+++||+|+||+++ ++|+||||+.++++|++. |+ +|+|+.++++||.+|
T Consensus 154 ~~g~de~llln~~g~v~E~s~sNi-f~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~---g~--~v~E~~i~~~eL~~a 227 (261)
T TIGR03461 154 NSEADEALVLDTDGNVVECTAANI-FWRKGNQVFTPDLSYCGVAGVMRQHVLALLPAL---GY--EIEEVKAGLEELLSA 227 (261)
T ss_pred hcCCCEEEEECCCCCEEEeccEEE-EEEECCEEECCCccccCcccHHHHHHHHHHHHc---CC--eEEEEecCHHHHhhC
Confidence 999999999999999999999999 66699999999996 899999999999999988 98 999999999999999
Q ss_pred ceeeeecCccCeEEEEEECCeecCCCCchHHHHHHH
Q 019507 283 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 318 (340)
Q Consensus 283 dEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~ 318 (340)
||+|+|||++||+||.+||++.++ +||+|++|+
T Consensus 228 de~f~~ns~~gi~pV~~id~~~~~---~~~~~~~l~ 260 (261)
T TIGR03461 228 DEVFITNSLMGVVPVNAIGETSYP---SRTLTRLLQ 260 (261)
T ss_pred CEEEEeCCccceEEEEEECCEEec---chHHHHHhh
Confidence 999999999999999999999995 479999875
No 17
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=7.4e-57 Score=416.23 Aligned_cols=247 Identities=38% Similarity=0.570 Sum_probs=222.7
Q ss_pred CcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCcc
Q 019507 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLL 144 (340)
Q Consensus 65 drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~ 144 (340)
||||+||||+||||++++|++++|++|++||.+||+.|+|+ |++.+++++.+.++++.++..+++||++|++|.+..++
T Consensus 1 Drg~~~GdgvFEt~~~~~g~~~~l~~Hl~RL~~Sa~~l~~~-~~~~~~l~~~i~~~i~~~~~~~~~ir~~v~rg~~~~~~ 79 (249)
T cd01559 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLGIP-EPDLPRLRAALESLLAANDIDEGRIRLILSRGPGGRGY 79 (249)
T ss_pred CCcccccceeEEEEEEECCEEccHHHHHHHHHHHHHhcCcC-CCCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCC
Confidence 79999999999999999999999999999999999999998 78999999999999999888889999999998776666
Q ss_pred CCCCCCCceEEEEEEcCCCCcCCCCcEEEEeeeec-CCCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecC
Q 019507 145 SPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPM-KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 223 (340)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~~~~~-~~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s 223 (340)
.+..++.+.+++.+.+.+.....+|+++.++++++ .++.++++|++||+.+++++++|+++|+||+||+|++|+|+|++
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g~v~E~~ 159 (249)
T cd01559 80 APSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGT 159 (249)
T ss_pred CCCCCCCCEEEEEeccCCHHHHhCCcEEEEcccccCCCCCCCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCCCEEEec
Confidence 66556677777776654432346799999988776 35678999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccceeeeecCccCeEEEEEECC
Q 019507 224 NVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDE 302 (340)
Q Consensus 224 ~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~ 302 (340)
++|| |++++|+|+||+++ |+||||||+.++++|+++ |+ +++|+.++++||.+|||+|+|||++||+||.+||+
T Consensus 160 ~~Ni-f~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~---g~--~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~ 233 (249)
T cd01559 160 ASNL-FFVKDGELVTPSLDRGGLAGITRQRVIELAAAK---GY--AVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDD 233 (249)
T ss_pred ceEE-EEEECCEEECCCcccCccccHHHHHHHHHHHHc---Cc--eEEEEecCHHHHhhCCEEEEecCccceeEEEEECC
Confidence 9999 56689999999996 799999999999999998 98 99999999999999999999999999999999998
Q ss_pred eecCCCCchHHHHHHHHHH
Q 019507 303 QPIGDGNVGELTMALSDLL 321 (340)
Q Consensus 303 ~~~~~g~~gp~t~~L~~~~ 321 (340)
.. +++||++++|++.|
T Consensus 234 ~~---~~~~~~~~~l~~~~ 249 (249)
T cd01559 234 HD---GPPGPLTRALRELL 249 (249)
T ss_pred cc---cCccHHHHHHHHhC
Confidence 43 46899999998865
No 18
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=1.1e-56 Score=428.12 Aligned_cols=272 Identities=25% Similarity=0.324 Sum_probs=231.4
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeee---CCe--ecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 122 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~ 122 (340)
|+||++++.+++.|+++||||+||||||||+|++ +|+ +|+|++|++||.+||+.|+|+. ++.++|++.+.++++
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~-~~~~~l~~~l~~~~~ 79 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPE-LPDELFLEALRQLVK 79 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999988 898 7888999999999999999974 599999999999999
Q ss_pred HcCCC--------CceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCcCCC---CcEEEE-eeeecCCC-CCCCccc
Q 019507 123 ASQCK--------KGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKE---GVKVIT-SSIPMKPR-LFATVKN 189 (340)
Q Consensus 123 ~~~~~--------~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gv~l~~-~~~~~~~~-~~~~~Kt 189 (340)
+++.. .+++|++|+++.+.+++.+. +.+.+++++.+.+. .+.. ++++.. ..+.+..+ .++++||
T Consensus 80 ~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~--~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~ 156 (313)
T TIGR01123 80 ANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPA--PEYLFYVFASPVGA-YFKGGLAPVSIFVTTEYDRAAPGGTGAVKV 156 (313)
T ss_pred HccccCCCCCCCCcEEEEeEEEecCCccccCCC--CccEEEEEEEEchh-hccccccceeEEecccceecCCCCCcccee
Confidence 87642 46899999998776777554 24677766665432 1222 345443 34445443 4789999
Q ss_pred -cCChhHHHHHHHHHHcCCCEEEEEcCCCc--EEecCCceEEEEEe-CCEEEcCCCC-CccccHHHHHHHHHhhhhhhCC
Q 019507 190 -VNYLPNVLAKMEAEDKGASASIWIDEDGY--VAEGPNVNVAFITH-DKELVLPFFD-KILSGCTAKRLLELAPKLVEQG 264 (340)
Q Consensus 190 -~nyl~~~la~~eA~~~G~de~Llld~~G~--V~E~s~sNi~fv~k-~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G 264 (340)
+||+.+++++++|+++|+||+||+|++|+ |+|++++|| |+++ +|+|+|||++ +||+||||+.|+++|+++ |
T Consensus 157 ~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNl-f~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~---G 232 (313)
T TIGR01123 157 GGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNF-FFITGDGELVTPPLSGSILPGITRDSLLQLAKDL---G 232 (313)
T ss_pred ccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeE-EEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHc---C
Confidence 69999999999999999999999999977 999999999 5556 4799999996 799999999999999998 9
Q ss_pred CcceEEEEeeCHHHHhcc----ceeeeecCccCeEEEEEE--CCee--cCCCCchHHHHHHHHHHHHHhhcCCC
Q 019507 265 RLKSVKTANLTVDEAKGA----AEMMYVGSTLPLLAITVW--DEQP--IGDGNVGELTMALSDLLWEDMVAGPE 330 (340)
Q Consensus 265 ~~~~v~E~~i~~~dL~~a----dEvfltnS~~gI~pV~~i--d~~~--~~~g~~gp~t~~L~~~~~~~i~~~~~ 330 (340)
+ +|+|++++++||.+| ||+|+|||++||+||++| |++. ++.|++||++++|+++|.+ +..|.+
T Consensus 233 i--~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~~d~~~~~~~~g~~g~~~~~l~~~~~~-~~~~~~ 303 (313)
T TIGR01123 233 M--EVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTD-IQYGDF 303 (313)
T ss_pred C--eEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEEECCeEEEcCCCCCChHHHHHHHHHHH-HhcCCC
Confidence 8 999999999999998 999999999999999999 7875 7777899999999999985 555543
No 19
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.6e-56 Score=433.40 Aligned_cols=281 Identities=24% Similarity=0.307 Sum_probs=241.1
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeee---CC--eecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NG--YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 122 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~ 122 (340)
|+||++++.+++.|++.||||+||||||||+|++ +| ++|+|++|++||.+||+.|+|+ +++.++|++.+.++++
T Consensus 42 ~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~-~~~~~~l~~~i~~li~ 120 (356)
T PRK13357 42 WHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMP-ELPEELFLEAVKQLVK 120 (356)
T ss_pred ccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999997 45 5888999999999999999996 5799999999999999
Q ss_pred HcCC--------CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC--CcCCCCcEEEEe-eeecC-CCCCCCccc-
Q 019507 123 ASQC--------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF--SQCKEGVKVITS-SIPMK-PRLFATVKN- 189 (340)
Q Consensus 123 ~~~~--------~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gv~l~~~-~~~~~-~~~~~~~Kt- 189 (340)
+++. ..+++|+++++|.+.+++.+. +.+.+++++.+.+. ....+|+++..+ .+.+. ++.++++|+
T Consensus 121 ~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~ 198 (356)
T PRK13357 121 ADRDWVPPYGEGASLYLRPFMIATEPFLGVKPA--EEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVG 198 (356)
T ss_pred hcccccCCCCCCccEEEEEEEEccCCcccccCC--CccEEEEEEEechhhcccCCCceEEEEcCCeEecCCCCcchhhcc
Confidence 8763 246899999998776776543 25677777765432 112267887766 55554 445689999
Q ss_pred cCChhHHHHHHHHHHcCCCEEEEEcC--CCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCc
Q 019507 190 VNYLPNVLAKMEAEDKGASASIWIDE--DGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRL 266 (340)
Q Consensus 190 ~nyl~~~la~~eA~~~G~de~Llld~--~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~ 266 (340)
+||+.+++|+++|+++||||+||+|. +|+|+|++++|| |++++++|+|||++ +||+||||+.|+++|+++ |+
T Consensus 199 ~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNl-F~v~~~~l~TPpl~~giL~GItR~~vlela~~~---Gi- 273 (356)
T PRK13357 199 GNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNF-FFITKDGTVTPPLSGSILPGITRDSLLQLAEDL---GL- 273 (356)
T ss_pred cccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEE-EEEECCEEEECCCCCCCCcchHHHHHHHHHHHC---CC-
Confidence 89999999999999999999999994 899999999999 66799999999996 799999999999999998 98
Q ss_pred ceEEEEeeCHHH------HhccceeeeecCccCeEEEEEEC----CeecCCCCchHHHHHHHHHHHHHhhcCCCCcceec
Q 019507 267 KSVKTANLTVDE------AKGAAEMMYVGSTLPLLAITVWD----EQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCV 336 (340)
Q Consensus 267 ~~v~E~~i~~~d------L~~adEvfltnS~~gI~pV~~id----~~~~~~g~~gp~t~~L~~~~~~~i~~~~~~~~~~~ 336 (340)
+|+|+.++++| |.+|||+|+|||+.||+||++|| ++.++.|++||++++|++.|. .+..|.+...|-|
T Consensus 274 -~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~~~~~~~~~g~~g~~t~~L~~~~~-~~~~~~~~~~~~w 351 (356)
T PRK13357 274 -TVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKEFVIGDGEVGPVTQKLYDELT-GIQFGDVEDPHGW 351 (356)
T ss_pred -eEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeCCCEEEcCCCCCChHHHHHHHHHH-HHhcCCCCCCCCC
Confidence 99999999999 89999999999999999999998 457887789999999999997 4677766555555
Q ss_pred cC
Q 019507 337 SY 338 (340)
Q Consensus 337 ~~ 338 (340)
.+
T Consensus 352 ~~ 353 (356)
T PRK13357 352 IV 353 (356)
T ss_pred cE
Confidence 54
No 20
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=2.3e-56 Score=431.83 Aligned_cols=279 Identities=22% Similarity=0.254 Sum_probs=240.7
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeee---CCe--ecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 121 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li 121 (340)
.|+||++++.+.+.|++.||||+||||||||+|++ +|+ +|+|++|++||.+||+.|+|+.| +.++|++.|.+++
T Consensus 45 ~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~p-~~~~l~~~i~~lv 123 (355)
T PLN03117 45 SFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPP-SLEQFVEAVKQTV 123 (355)
T ss_pred eEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Confidence 59999999999999999999999999999999998 898 78999999999999999999877 9999999999999
Q ss_pred HHcCC-------CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC-CcCCCCcEEEEee-eecC-CCCCCCcccc-
Q 019507 122 AASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-SQCKEGVKVITSS-IPMK-PRLFATVKNV- 190 (340)
Q Consensus 122 ~~~~~-------~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gv~l~~~~-~~~~-~~~~~~~Kt~- 190 (340)
++++. ...++|++++++.+..++.|. +.+.+++++.+.+. ....+|+++.+++ +++. ++.++++|++
T Consensus 124 ~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~~~~gi~l~~~~~~~r~~~~~l~~~K~~~ 201 (355)
T PLN03117 124 LANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPA--PEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGTGGVKSCT 201 (355)
T ss_pred HhccccccCCCCCcEEEEEEEEEecCccCcCCC--CCcEEEEEEEeccccccCCCCEEEEEcCceEeCCCCCccchhhhh
Confidence 98873 245889998876545555443 35566666665432 2235799988764 5554 4567899996
Q ss_pred CChhHHHHHHHHHHcCCCEEEEEcCC--CcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcc
Q 019507 191 NYLPNVLAKMEAEDKGASASIWIDED--GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLK 267 (340)
Q Consensus 191 nyl~~~la~~eA~~~G~de~Llld~~--G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~ 267 (340)
||+.+++++++|+++||||+|++|.+ |+|+|++++|| |+++|++|+||+++ +||+||||+.|+++|+++ |+
T Consensus 202 nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNl-F~v~~~~l~TP~l~~~iL~GItR~~vl~la~~~---Gi-- 275 (355)
T PLN03117 202 NYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNI-FILKGNIVSTPPTSGTILPGVTRKSISELARDI---GY-- 275 (355)
T ss_pred hhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE-EEEECCEEEeCCCcCCCCCCHHHHHHHHHHHHC---CC--
Confidence 99999999999999999999999974 69999999999 66799999999985 799999999999999998 98
Q ss_pred eEEEEeeCHHHHhccceeeeecCccCeEEEEEECCe----ecCCCCchHHHHHHHHHHHHHhhcCCC----Ccceec
Q 019507 268 SVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ----PIGDGNVGELTMALSDLLWEDMVAGPE----TQRHCV 336 (340)
Q Consensus 268 ~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~----~~~~g~~gp~t~~L~~~~~~~i~~~~~----~~~~~~ 336 (340)
+|+|+.++++||.+|||+|+|||+.+|+||.+|+.. .++.++ +|+|++|+++|. +||.|.. .|.|+|
T Consensus 276 ~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~g~~~~~~~W~~~v 350 (355)
T PLN03117 276 QVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKKVKYRTGE-EALSTKLHLILT-NIQMGVVEDKKGWMVEI 350 (355)
T ss_pred EEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecCceEEeCCCC-ChHHHHHHHHHH-HHhCCCCCCCCCCEEEc
Confidence 999999999999999999999999999999999755 677664 899999999998 7999976 566665
No 21
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=2.4e-56 Score=419.44 Aligned_cols=257 Identities=29% Similarity=0.384 Sum_probs=228.0
Q ss_pred eccCCcccccccceeeeeeeeC-----CeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCC
Q 019507 61 IPIDDHMVHRGHGVFDTAIILN-----GYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ-------CKK 128 (340)
Q Consensus 61 i~~~drg~~yG~gvFEtlrv~~-----G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~-------~~~ 128 (340)
|+++||||+||||||||+|+++ |++|+|++|++||.+||+.|+|+ +++.+++.+.+.++++.++ ..+
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~-~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLP-PFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 7899999999999999999999 89999999999999999999998 8899999999999999873 357
Q ss_pred ceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCc--CCCCcEEEEeeeecCCC-CCCCccc-cCChhHHHHHHHHHH
Q 019507 129 GTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPR-LFATVKN-VNYLPNVLAKMEAED 204 (340)
Q Consensus 129 ~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gv~l~~~~~~~~~~-~~~~~Kt-~nyl~~~la~~eA~~ 204 (340)
++||++|++|.+.+++.+. ..+++++++.+.+... ..+|+++.++++++..+ ..+.+|+ +||+.+++++++|++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~--~~~~~~i~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~ 158 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPA--LEYLFAVFASPVGAYFKGGEKGVSALVSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAE 158 (279)
T ss_pred EEEEEEEEeccccCCcCCC--CccEEEEEEEEccccccCCCCCeEEEEeeEEcCCCCCCcccchhhccHHHHHHHHHHHH
Confidence 8999999999877777554 3567777766543211 34799999888877644 3456995 799999999999999
Q ss_pred cCCCEEEEEcCC-CcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhcc
Q 019507 205 KGASASIWIDED-GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA 282 (340)
Q Consensus 205 ~G~de~Llld~~-G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~a 282 (340)
+|+||+||+|++ |+|+|++++|| |++++++|+||+++ ++|+||||+.|+++|+++ |+ +|+|+.++++||.+|
T Consensus 159 ~g~de~l~ld~~~g~v~E~~~sNl-f~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~---Gi--~v~e~~i~~~~l~~a 232 (279)
T cd01557 159 KGYDQALWLDGAHGYVAEVGTMNI-FFVKDGELITPPLDGSILPGITRDSILELARDL---GI--KVEERPITRDELYEA 232 (279)
T ss_pred CCCCEEEEEcCCCCEEEEeCcEEE-EEEECCEEEcCCCcCCCCCchHHHHHHHHHHHc---CC--eEEEEeCCHHHHhhC
Confidence 999999999999 99999999999 66699999999997 899999999999999998 98 999999999999999
Q ss_pred ceeeeecCccCeEEEEEECCeec--CCCCchHHHHHHHHHHHHHhhc
Q 019507 283 AEMMYVGSTLPLLAITVWDEQPI--GDGNVGELTMALSDLLWEDMVA 327 (340)
Q Consensus 283 dEvfltnS~~gI~pV~~id~~~~--~~g~~gp~t~~L~~~~~~~i~~ 327 (340)
||+|+|||++||+||++||++.+ +.+++||++++|++.|+ .++.
T Consensus 233 de~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~~-~~~~ 278 (279)
T cd01557 233 DEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLLT-DIQY 278 (279)
T ss_pred CEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHHH-HHhc
Confidence 99999999999999999999998 77789999999999997 4543
No 22
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.4e-55 Score=430.86 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=242.5
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeee---CCe--ecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGY--LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 122 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~ 122 (340)
|.||++++.+.+.|++.||||+|||||||||+++ +|+ +|++++|++||.+||+.|+|+.+ +.++|.++|.++++
T Consensus 96 w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~~-~~e~l~~~i~~lv~ 174 (403)
T PLN02782 96 FSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPAP-TVEQFVEAVKETVL 174 (403)
T ss_pred EeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCCC-CHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999998 565 69999999999999999999866 99999999999999
Q ss_pred HcCC-------CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC-Cc-CCCCcEEEEe-eeecC-CCCCCCcccc-
Q 019507 123 ASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-SQ-CKEGVKVITS-SIPMK-PRLFATVKNV- 190 (340)
Q Consensus 123 ~~~~-------~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~gv~l~~~-~~~~~-~~~~~~~Kt~- 190 (340)
.++. ...|||++++++.+.+++.|. +.+.+++++.|.+. .. ..+++++.++ ++.|. ++.++++|++
T Consensus 175 ~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~--~~~~~~i~~~p~~~~~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~ 252 (403)
T PLN02782 175 ANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIG 252 (403)
T ss_pred hccccCCCCCCccEEEEEEEEecCCCcCcCCC--CCcEEEEEEEECccccccCCccEEEEEeCceeecCCCCCcccchhh
Confidence 8864 346899999987667777665 35677777765432 11 1246677765 36564 4568899987
Q ss_pred CChhHHHHHHHHHHcCCCEEEEEc--CCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcc
Q 019507 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLK 267 (340)
Q Consensus 191 nyl~~~la~~eA~~~G~de~Llld--~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~ 267 (340)
||+.+++++++|+++||||+||+| .+|+|+|++++|| |++++++|+||+++ +||+||||+.||++|+++ |+
T Consensus 253 nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl-F~v~~~~l~TP~l~~~iLpGITR~svlela~~~---Gi-- 326 (403)
T PLN02782 253 NYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNI-FIVKDNVISTPAIKGTILPGITRKSIIDVARSQ---GF-- 326 (403)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEE-EEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHc---CC--
Confidence 999999999999999999999999 4899999999999 66689999999996 799999999999999998 98
Q ss_pred eEEEEeeCHHHHhccceeeeecCccCeEEEEEE--CCeec--CCCCchHHHHHHHHHHHHHhhcCCCCcceecc
Q 019507 268 SVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW--DEQPI--GDGNVGELTMALSDLLWEDMVAGPETQRHCVS 337 (340)
Q Consensus 268 ~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~i--d~~~~--~~g~~gp~t~~L~~~~~~~i~~~~~~~~~~~~ 337 (340)
+|+|+.++++||.+|||+|+|||+.+|+||.+| +|+.+ +.|++||++++|++.|. +||.|...-.|-|.
T Consensus 327 ~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g~~~~~~~g~~Gpvt~~L~~~l~-~iq~G~~~~~~~W~ 399 (403)
T PLN02782 327 QVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLT-SLQMGLIEDNMNWT 399 (403)
T ss_pred eEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECCEEEeCCCCCcCHHHHHHHHHHH-HHhcCCCCCCCCCe
Confidence 999999999999999999999999999999999 89887 77789999999999997 89999874333444
No 23
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-55 Score=411.94 Aligned_cols=259 Identities=18% Similarity=0.150 Sum_probs=226.2
Q ss_pred cccceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 019507 44 MYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123 (340)
Q Consensus 44 ~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~ 123 (340)
|..+|+||++++.+++. +|++||||+|||||+++|++++|++|++||.+||+.|++ .|++.+++++.+.++++
T Consensus 2 ~~~~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~~g~~~~l~~Hl~RL~~sa~~l~~-~~~~~~~l~~~l~~~~~- 74 (266)
T PRK09266 2 MPLIELNGRPATAEDLA-----ALALANYGHFTSMQVRDGRVRGLDLHLQRLRRASRELFG-AALDDDRVRAQLRAALA- 74 (266)
T ss_pred ccEEEECCEECCHHHhh-----hHhhccceEEEEEEEECCEEcCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHh-
Confidence 55689999999998876 599999999999999999999999999999999999875 57899999999999984
Q ss_pred cCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCcCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHH
Q 019507 124 SQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAE 203 (340)
Q Consensus 124 ~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~ 203 (340)
++..+++||+.+++|.+++++.+. ...+++++.+.+.+. ...+|+++.++++++ .++++|+.||+.+++++++|+
T Consensus 75 ~~~~~~~ir~~v~r~~g~~~~~~~-~~~~~~~i~~~~~~~-~~~~~v~l~~~~~~r---~~~~~K~~~~l~~vla~~~a~ 149 (266)
T PRK09266 75 AGPADASVRVTVFAPDFDFRNPLA-DVAPDVLVATSPPAD-GPAGPLRLQSVPYER---ELPHIKHVGTFGQLHLRRLAQ 149 (266)
T ss_pred cCCCcEEEEEEEEecCcccCCCCC-CCCceEEEEEecCCc-CCCCCeEEEEEEecc---cCCCCCCCCcHHHHHHHHHHH
Confidence 456789999999998777665332 345666666654321 235789888877654 356899999999999999999
Q ss_pred HcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccc
Q 019507 204 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 283 (340)
Q Consensus 204 ~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~ad 283 (340)
++|+||+||+|.+|+|+||+++|| |++++|+|+||+. +|||||||+.|+++|+++ |+ +|+|+.++++||.+||
T Consensus 150 ~~g~de~l~ln~~g~v~E~~~sNl-f~v~~~~l~TP~~-~~L~GItR~~ll~~~~~~---g~--~v~e~~i~~~eL~~ad 222 (266)
T PRK09266 150 RAGFDDALFVDPDGRVSEGATWNL-GFWDGGAVVWPQA-PALPGVTMALLQRGLERL---GI--PQRTRPVTLADLGRFA 222 (266)
T ss_pred HcCCCeEEEEcCCCcEEEcCceEE-EEEECCEEECCCC-CccchHHHHHHHHHHHHc---CC--eeEEEECCHHHHHHhh
Confidence 999999999999999999999999 6678999999985 899999999999999988 98 9999999999999999
Q ss_pred eeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHH
Q 019507 284 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323 (340)
Q Consensus 284 EvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~ 323 (340)
|+|+|||++||+||.+||+++++.+ +|++++|++.|++
T Consensus 223 evfltnSl~gi~pV~~i~~~~~~~~--~~~~~~l~~~~~~ 260 (266)
T PRK09266 223 GAFACNAWRGQRAVSAIDDVALPDS--HALLELLRRAYEA 260 (266)
T ss_pred HhhhhcCccceEEEEEECCEECCCC--chHHHHHHHHHHh
Confidence 9999999999999999999999753 7999999999863
No 24
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=4.7e-54 Score=418.28 Aligned_cols=273 Identities=21% Similarity=0.287 Sum_probs=234.0
Q ss_pred ceeCCEEeCCCcceeccCCcccccccceeeeeeee---CCee--cCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 019507 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGYL--YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLT 121 (340)
Q Consensus 47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li 121 (340)
.|.||++++.+.+.|++.||||+|||||||||+++ +|++ |++++|++||.+||+.|+|+.| +.+++.+++.+++
T Consensus 81 ~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~-~~e~~~~~i~~lv 159 (388)
T PLN02259 81 EFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSP-SVDQFVNAVKQTA 159 (388)
T ss_pred eEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCc-CHHHHHHHHHHHH
Confidence 38899999999999999999999999999999998 8987 8899999999999999999866 9999999999999
Q ss_pred HHcCC-------CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCcCCCCc---EEEEe-eeecC-CCCCCCccc
Q 019507 122 AASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGV---KVITS-SIPMK-PRLFATVKN 189 (340)
Q Consensus 122 ~~~~~-------~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv---~l~~~-~~~~~-~~~~~~~Kt 189 (340)
+.++. ...+||++++++.+.+++.|. ..+.+++++.|.+. .+.+|+ ++.++ ++.|. ++.++++|+
T Consensus 160 ~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~--~~~~~~i~~~p~~~-~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~ 236 (388)
T PLN02259 160 LANKRWVPPAGKGTLYIRPLLMGSGPILGLGPA--PEYTFIVYASPVGN-YFKEGMAALNLYVEEEYVRAAPGGAGGVKS 236 (388)
T ss_pred HhccccCCCCCCceEEEEEEEEecCCccCcCCC--CCcEEEEEEEechh-hhhcCcceEEEEeecceeccCCCCCcccch
Confidence 98864 235889888765445677654 36677777765432 123454 45443 45564 446799998
Q ss_pred c-CChhHHHHHHHHHHcCCCEEEEEcC--CCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCC
Q 019507 190 V-NYLPNVLAKMEAEDKGASASIWIDE--DGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGR 265 (340)
Q Consensus 190 ~-nyl~~~la~~eA~~~G~de~Llld~--~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~ 265 (340)
+ ||+.+++++++|+++||||+||+|. +|+|+|++++|+ |+++|++|+||+++ +||+||||+.||++|+++ |+
T Consensus 237 ~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNl-F~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~---G~ 312 (388)
T PLN02259 237 ITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV-FVVKGRTISTPATNGTILEGITRKSVMEIASDQ---GY 312 (388)
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEE-EEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHC---CC
Confidence 5 9999999999999999999999997 999999999999 66789999999996 799999999999999998 98
Q ss_pred cceEEEEeeCHHHHhccceeeeecCccCeEEEEEECC--e--ecCCCCchHHHHHHHHHHHHHhhcCCCC
Q 019507 266 LKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDE--Q--PIGDGNVGELTMALSDLLWEDMVAGPET 331 (340)
Q Consensus 266 ~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~--~--~~~~g~~gp~t~~L~~~~~~~i~~~~~~ 331 (340)
+|+|+.++++||.+|||+|+|||+.+|+||.+|+. + .++.+ .||++++|++.|. +||+|...
T Consensus 313 --~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~~~~~~~~-~g~~t~~L~~~l~-~iq~G~~~ 378 (388)
T PLN02259 313 --QVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKRVEYKTG-DESVCQKLRSVLV-GIQTGLIE 378 (388)
T ss_pred --eEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCceEEeCCC-CCHHHHHHHHHHH-HHHcCCCC
Confidence 99999999999999999999999999999999985 3 36554 5899999999998 89999873
No 25
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=3.4e-53 Score=411.45 Aligned_cols=279 Identities=19% Similarity=0.246 Sum_probs=231.6
Q ss_pred eeCCEEeCCCcceeccCCcccccccceeeeeeee---CCee--cCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 019507 48 IFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIIL---NGYL--YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 122 (340)
Q Consensus 48 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~---~G~~--~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~ 122 (340)
|-++++.+.....|++.|++|+||||+||||+++ +|++ |++++|++||.+||++|+|+.| +.++|.++|.++++
T Consensus 78 w~~~~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~-~~e~~~~~i~~lv~ 156 (384)
T PLN02883 78 FEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSP-SVHQFIEGVKQTVL 156 (384)
T ss_pred ccCCeEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHH
Confidence 4455555667778999999999999999999998 6766 5888999999999999999866 99999999999999
Q ss_pred HcCC-------CCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC-c-CCCCcEEEEeee-ecC-CCCCCCcccc-
Q 019507 123 ASQC-------KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-Q-CKEGVKVITSSI-PMK-PRLFATVKNV- 190 (340)
Q Consensus 123 ~~~~-------~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~gv~l~~~~~-~~~-~~~~~~~Kt~- 190 (340)
.+.. ...|||++++++.+.+++.+. ..+.+++++.|.+.. . ..+++++.+++. +|. +..++++|++
T Consensus 157 ~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~--~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~ 234 (384)
T PLN02883 157 ANRRWVPPPGKGSLYLRPLLFGSGASLGVAAA--PEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAIS 234 (384)
T ss_pred hccccCCCCCCceEEEEEEEEecCCccCCCCC--CCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhh
Confidence 8863 346899999998777777654 356777777654321 1 123566666643 554 4568999987
Q ss_pred CChhHHHHHHHHHHcCCCEEEEEcCC--CcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcc
Q 019507 191 NYLPNVLAKMEAEDKGASASIWIDED--GYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLK 267 (340)
Q Consensus 191 nyl~~~la~~eA~~~G~de~Llld~~--G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~ 267 (340)
||+.+++++++|+++||||+||+|.+ |+|+|++++|| |++++++|+||+++ +||+||||+.||++|+++ |+
T Consensus 235 nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNl-F~v~~~~l~TP~l~~~iLpGITR~svl~la~~~---G~-- 308 (384)
T PLN02883 235 NYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANI-FLVKGNIIVTPATSGTILGGITRKSIIEIALDL---GY-- 308 (384)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEE-EEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHC---CC--
Confidence 89999999999999999999999965 69999999999 56689999999996 799999999999999998 98
Q ss_pred eEEEEeeCHHHHhccceeeeecCccCeEEEEEECCe----ecCCCCchHHHHHHHHHHHHHhhcCCC----Ccceecc
Q 019507 268 SVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ----PIGDGNVGELTMALSDLLWEDMVAGPE----TQRHCVS 337 (340)
Q Consensus 268 ~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~----~~~~g~~gp~t~~L~~~~~~~i~~~~~----~~~~~~~ 337 (340)
+|+|+.++++||.+|||+|+|||+.+|+||.+|+.+ .+..+ .||++++|++.|. +||.|.. .|.|+|+
T Consensus 309 ~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~~~~~~~~-~G~vt~~L~~~l~-~iq~G~~~d~~~W~~~~~ 384 (384)
T PLN02883 309 KVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVG-DGIVTQQLRSILL-GIQTGSIQDTKDWVLQIA 384 (384)
T ss_pred eEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCceeecccC-CCHHHHHHHHHHH-HHHcCCCCCCCCCeEeCC
Confidence 999999999999999999999999999999999843 11222 4899999999997 8999987 4666553
No 26
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.6e-52 Score=390.72 Aligned_cols=272 Identities=31% Similarity=0.426 Sum_probs=234.9
Q ss_pred cceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 019507 46 SSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125 (340)
Q Consensus 46 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~ 125 (340)
..|+||++++...+.+++.||+++||+|+|||+|+++|++|+|++|++||.+||+.|+|+.|++.+++......++..++
T Consensus 3 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~g~~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T COG0115 3 KIWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLLAKNN 82 (284)
T ss_pred eEeECCEEccCcccccCcccceeccccceeEEEEEeCCcccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCC-ceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCC-Cc---CCCCcEEEEee-eecCCC-CCCCccccCChhHHHH
Q 019507 126 CKK-GTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDF-SQ---CKEGVKVITSS-IPMKPR-LFATVKNVNYLPNVLA 198 (340)
Q Consensus 126 ~~~-~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~gv~l~~~~-~~~~~~-~~~~~Kt~nyl~~~la 198 (340)
... .|+|+.+..+.+.++..+ +..+.+.+++.+.+. .. ..+|+.+.+++ +++.++ ....+|++||+.++++
T Consensus 83 ~~~~~y~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~~a 160 (284)
T COG0115 83 LVPGLYIRPLVRGGGGGLGVRD--ATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLA 160 (284)
T ss_pred CCCceEEEEEEEeecCCCCcCC--CCccEEEEEEEecccccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHHHH
Confidence 655 577788777666666655 345667666665433 22 13576766653 433333 2456899999999999
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEe-CCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCH
Q 019507 199 KMEAEDKGASASIWIDEDGYVAEGPNVNVAFITH-DKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTV 276 (340)
Q Consensus 199 ~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k-~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~ 276 (340)
+++|+++|+||+|++|.+|+|+|++++|||| ++ ||+|+||+++ ++||||||+.||++|+++ |+ ++.|++++.
T Consensus 161 ~~~A~~~G~~eal~~~~~G~V~Eg~~sNvf~-v~~dg~~~TP~~~~~iL~GitR~~li~la~~~---G~--~v~E~~i~~ 234 (284)
T COG0115 161 KREAKAAGADEALLLDEDGYVTEGAGSNVFF-VKGDGVLVTPPLSGGILPGITRDSLLELAKEL---GL--TVEERPITL 234 (284)
T ss_pred HHHHHHCCCCEEEEecCCCeEEEcCcceEEE-EEECCEEECCCCCCCccccHHHHHHHHHHHHc---Cc--eEEEeecCH
Confidence 9999999999999999999999999999955 56 8899999996 799999999999999987 98 999999999
Q ss_pred HHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcCC
Q 019507 277 DEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGP 329 (340)
Q Consensus 277 ~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~~ 329 (340)
+||.+|||+|+|||+++|+||.+||++ . +++||+|++|++.|. .++.+.
T Consensus 235 ~~l~~adevf~t~t~~~v~PV~~i~~~-~--~~~gpit~~l~~~~~-~~~~~~ 283 (284)
T COG0115 235 EDLKQADEVFLTNTAAGVTPVGLIDGR-V--GQPGPVTKKLRELLT-DIQYGE 283 (284)
T ss_pred HHHhhCCEEEEEccceEEEEEEEECCc-c--CCCChHHHHHHHHHH-HHhccC
Confidence 999999999999999999999999888 4 789999999999998 566653
No 27
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-45 Score=342.43 Aligned_cols=279 Identities=35% Similarity=0.519 Sum_probs=231.9
Q ss_pred HHHHh-hccCCCCCCccccccceeCCEEeCCCcceeccCCcccccccceeeeeeeeCC-----eecCHHhHHHHHHHHHH
Q 019507 27 QKLQE-KWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG-----YLYELDVHLDRFLRSAV 100 (340)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G-----~~~~l~~Hl~RL~~Sa~ 100 (340)
.+|.+ +|+.+++.|+ ++..+++.+..+ |||+|+||+++++++ ++|++++|++|+.+||.
T Consensus 63 ~k~~~~gw~~~~I~p~--------gni~~~Paa~vl-------hy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~ 127 (379)
T KOG0975|consen 63 IKWSEDGWSQGEISPF--------GNLSLHPAAKVL-------HYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAE 127 (379)
T ss_pred EeccccCcCCCCccCc--------CCEeeChhhhce-------ecchhhccccccccCCCCeEEEecchhhHHHHHhhhh
Confidence 34445 7888888888 888888887765 999999999988765 69999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCC-----CCc--eEEEEEecCCCCCccCCCCCCCceEEEEEEcC-CCCcC-CCCcE
Q 019507 101 SARISSPFPRSTLRSILVQLTAASQC-----KKG--TLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD-DFSQC-KEGVK 171 (340)
Q Consensus 101 ~l~i~~p~~~~~l~~~i~~li~~~~~-----~~~--~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~gv~ 171 (340)
++.||. ++.+++.++|.+++.+++. ..+ |+|+.+.++...++..+ ++..++++++.|. +|... .+|+.
T Consensus 128 r~~lP~-p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~--~~e~~l~vi~spvg~yf~~g~~~v~ 204 (379)
T KOG0975|consen 128 RACLPS-PDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSP--APEATLFVIVSPVGPYFKSGFKGVN 204 (379)
T ss_pred hccCCC-CCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCccccccc--CCcceEEEEEcccchhccccccceE
Confidence 999964 5999999999999988653 223 67777766654555544 3577888887653 33332 56788
Q ss_pred EEEee-eecC-CCCCCCcc-ccCChhHHHHHHHHHHcCCCEEEEEcCCC-cEEecCCceEEEEEeCCE--EEcCCCCC-c
Q 019507 172 VITSS-IPMK-PRLFATVK-NVNYLPNVLAKMEAEDKGASASIWIDEDG-YVAEGPNVNVAFITHDKE--LVLPFFDK-I 244 (340)
Q Consensus 172 l~~~~-~~~~-~~~~~~~K-t~nyl~~~la~~eA~~~G~de~Llld~~G-~V~E~s~sNi~fv~k~~~--l~TP~l~~-i 244 (340)
+...+ ..|. +..+.+.| +.||++++++..||+.+||+++||+|.++ +|+|+++.|| |++++|+ ++|||++| |
T Consensus 205 L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNi-F~v~~n~~elvTPp~dg~I 283 (379)
T KOG0975|consen 205 LLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNI-FMVKKNEDELVTPPLDGTI 283 (379)
T ss_pred EEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeE-EEEEcCceeEecCCCCCcc
Confidence 87664 3444 55688877 79999999999999999999999999766 9999999999 5557777 99999996 9
Q ss_pred cccHHHHHHHHHhhhhhhCC-CcceEEEEeeCHHHHhccceeeeecCccCeEEEEEE---C----CeecCCCCchHHHHH
Q 019507 245 LSGCTAKRLLELAPKLVEQG-RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW---D----EQPIGDGNVGELTMA 316 (340)
Q Consensus 245 L~GItR~~ll~la~~~~~~G-~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~i---d----~~~~~~g~~gp~t~~ 316 (340)
||||||++++++|+++ | + +|+||.++++|+.+|+|+|.|+|+..|.||..| | ...++.|+.||++++
T Consensus 284 LpGvTR~sileLa~~~---g~~--~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~~~i~~~~~~~g~~g~l~~~ 358 (379)
T KOG0975|consen 284 LPGVTRKSILELARDL---GEF--KVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKDEKIHIPTIGEGKEGPLAKK 358 (379)
T ss_pred cCCccHHHHHHHHHHh---Cce--EEEEEEEeHHHhhhhHhhhcccceeeeccccceeecccccceeecCCCCccHHHHH
Confidence 9999999999999998 8 6 999999999999999999999999999999876 3 446778889999999
Q ss_pred HHHHHHHHhhcCCC
Q 019507 317 LSDLLWEDMVAGPE 330 (340)
Q Consensus 317 L~~~~~~~i~~~~~ 330 (340)
|++.+. +||+|..
T Consensus 359 l~~~l~-~iq~g~~ 371 (379)
T KOG0975|consen 359 LLSTLT-DIQYGRE 371 (379)
T ss_pred HHHHHH-HhhcCCc
Confidence 999998 7999963
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=3.1e-44 Score=327.30 Aligned_cols=223 Identities=34% Similarity=0.480 Sum_probs=177.5
Q ss_pred cCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCC
Q 019507 86 YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ-CKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 164 (340)
Q Consensus 86 ~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~-~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~ 164 (340)
|+|++|++||.+||+.+ +..+++.+.+++.+.++++.++ ..+++||+++++|.+..+..+..+..+.. .....+..
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~~~~~~ir~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 77 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPDQGEGYIRITVTRGGGPLGGSPPENSAPPP--FSIAPPRR 77 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETSSSSSSSECSEEEEEE--EEEETCHH
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCCcCccCcccccccc--cccccccc
Confidence 78999999999999999 7678899999999999999988 67789999999997776554432111111 11111111
Q ss_pred c--C---CCCcEEEEeeeecCCCCCCCccccCChhHHH-HHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEc
Q 019507 165 Q--C---KEGVKVITSSIPMKPRLFATVKNVNYLPNVL-AKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVL 238 (340)
Q Consensus 165 ~--~---~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~l-a~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~T 238 (340)
. . ..++.+.....+ ..++++++|++||+.+++ +.++|++.|+||+|++|++|+|+|++++|| |+++||+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Kt~~~~~~~~~~~~~a~~~g~de~ll~d~~G~v~E~~~sNi-f~~~~~~~~T 155 (231)
T PF01063_consen 78 PPPPLVGSVGVRRASPPLP-RPNPLPRHKTTNRLANVLAALRAAREKGADEALLLDEDGNVTEGSTSNI-FFVKDGTLYT 155 (231)
T ss_dssp HHEEEEEECSEECETTTSE--TTTSTTS-BSHHHHHHHHHHHHHHHTTSSEEEEEETTSBEEEESSSEE-EEEETTEEEE
T ss_pred CCcceeeeeeEEecccccc-ccCCCCCeeECCcchhhHHHHHHHHhcCcchhheecCCCCcCCCCCccc-ccccCCEEEc
Confidence 0 0 111111111111 122478999999999999 666677899999999999999999999999 6679999999
Q ss_pred CCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHH
Q 019507 239 PFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 317 (340)
Q Consensus 239 P~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L 317 (340)
|+++ |||+||||+.++++++++ |+ +|+|+.++++||.+|||+|+|||++||+||.+||++.++ +||+|++|
T Consensus 156 P~~~~giL~Gitr~~ll~~~~~~---g~--~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~---~~p~~~~L 227 (231)
T PF01063_consen 156 PPLDSGILPGITRQLLLELAKEL---GI--PVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG---PGPITRRL 227 (231)
T ss_dssp ESGSSSSB--HHHHHHHHHHHHT---TS--EEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST---THHHHHHH
T ss_pred CChhhhhccHHHHHHHHHHHHhC---CC--CcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC---CCHHHHHH
Confidence 9996 799999999999999998 98 999999999999999999999999999999999999996 79999999
Q ss_pred HHHH
Q 019507 318 SDLL 321 (340)
Q Consensus 318 ~~~~ 321 (340)
+++|
T Consensus 228 ~~~~ 231 (231)
T PF01063_consen 228 QEAY 231 (231)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=313.46 Aligned_cols=202 Identities=22% Similarity=0.222 Sum_probs=170.1
Q ss_pred cceeeeeeee-CCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCccCCCCCC
Q 019507 72 HGVFDTAIIL-NGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCP 150 (340)
Q Consensus 72 ~gvFEtlrv~-~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~~~~~~~ 150 (340)
.++||||+++ +|++++|++|++||.+||+.|+++. +.+++++.+.++++++ ...++||+.+++| |.
T Consensus 4 ~~lfETi~~~~~G~~~~l~~Hl~RL~~sa~~l~~~~--~~~~l~~~l~~~~~~~-~~~~~vrl~~~~~-g~--------- 70 (209)
T PRK07546 4 FELIETLRWEPGAGFPRLDRHLARLERSARALGFPC--DPAAVRAKLAEAVAGA-QGPLRLRLTLARD-GR--------- 70 (209)
T ss_pred ccEEEEEEEeCCCCcccHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhhcc-CCCeEEEEEEcCC-CC---------
Confidence 3799999999 9999999999999999999999854 5788999999988763 3567899998876 21
Q ss_pred CceEEEEEEcCCCCcCCCCcEEEEeeeecC-CCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEE
Q 019507 151 TSAFYAVVIDDDFSQCKEGVKVITSSIPMK-PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAF 229 (340)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~gv~l~~~~~~~~-~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~f 229 (340)
+++.+.|.+..+...++++.++..++. ++++.++||+||+.+++++++|+++|+||+||+|++|+|+||+++|| |
T Consensus 71 ---~~i~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G~v~E~s~~Ni-~ 146 (209)
T PRK07546 71 ---LTVETAPLPPLPPDTVWRVAIARTRLDSADPLLRYKTTRRAAYDAARAELPPAEADEVILLNERGEVCEGTITNV-F 146 (209)
T ss_pred ---EEEEEecCCCCCCCCcEEEEEcCcccCCCCcchhcccCChHHHHHHHHHHhhCCCCEEEEECCCCcEEEcCceeE-E
Confidence 223333333222335677777666554 44677899999999999999999999999999999999999999999 5
Q ss_pred EEeCCEEE-cCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccceeeeecCccCeEEEEEE
Q 019507 230 ITHDKELV-LPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVW 300 (340)
Q Consensus 230 v~k~~~l~-TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~i 300 (340)
++++++|+ ||+++ |+|+||||+.+++. + +++|+.++++||.+|||+|+|||++||+||..|
T Consensus 147 ~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-------~---~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 147 LDRGGGMLTTPPLSCGLLPGVLRAELLDA-------G---RAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred EEECCEEEECCCCcCCCCccHHHHHHHhh-------C---CeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 66999999 99996 89999999999973 2 799999999999999999999999999999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=254.54 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=143.6
Q ss_pred ceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCccCCCCCCC
Q 019507 73 GVFDTAIILNGYLYELDVHLDRFLRSAVSARISS-PFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPT 151 (340)
Q Consensus 73 gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~-p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~~~~~~~~ 151 (340)
++||||++++|++++|++|++||.+||+.|++.. |++.+++.+.+.++ .++.+|+.|+++.|.+.+..
T Consensus 4 ~l~ETir~~~g~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~------~~~~~r~rl~~~~g~~~~~~----- 72 (187)
T PRK07101 4 PLFETIAIEDGEIQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL------QEGLVRCRIDYNAEIYQVQY----- 72 (187)
T ss_pred cceEEEeeeCCeeccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh------cCCCEEEEEEecCCcEEEEE-----
Confidence 6999999999999999999999999999998866 88988888888654 23556777776655332211
Q ss_pred ceEEEEEEcCCCCcCCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEE
Q 019507 152 SAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 231 (340)
Q Consensus 152 ~~~~~~~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~ 231 (340)
.|.+. ....++++..++ .....+|++||. .+....|++.|+||+|++| +|+|+||+++|| |++
T Consensus 73 -------~~~~~-~~~~~~~~~~~~-----~~~~~~Kt~~r~--~~~~~~a~~~g~de~l~~~-~G~v~E~~~sNi-~~~ 135 (187)
T PRK07101 73 -------FPYQR-RPIRSFQPVYCD-----DIDYSLKYTDRS--ALNELFAQKGECDEIIIIK-NGLVTDTSIGNL-AFF 135 (187)
T ss_pred -------EcCCC-CCcCceEEEecC-----CcccccccCCHH--HHHHHHHHhCCCCEEEEEc-CCEEEEccceEE-EEE
Confidence 11111 123477765432 124478999873 3344445678999999997 899999999999 666
Q ss_pred eCCEEEcCCCCCccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhccceeeeecCccCe
Q 019507 232 HDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 294 (340)
Q Consensus 232 k~~~l~TP~l~~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~adEvfltnS~~gI 294 (340)
+||+|+||| .++|+||||+.+++. | +|+|+.++++||.+|||+|+|||++|.
T Consensus 136 ~~~~~~TP~-~~~L~Gi~R~~ll~~-------~---~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 136 DGKQWFTPK-KPLLKGTQRARLLDE-------G---KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred ECCEEEcCC-CCCccHHHHHHHHcc-------C---CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 999999999 589999999999972 5 699999999999999999999999884
No 31
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=42.28 E-value=38 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHhhhhhhCCCcceEEEEee
Q 019507 246 SGCTAKRLLELAPKLVEQGRLKSVKTANL 274 (340)
Q Consensus 246 ~GItR~~ll~la~~~~~~G~~~~v~E~~i 274 (340)
-||||..+...++++..+|+ ++.|.+
T Consensus 14 ~GiTRSvIVNALRKleSaGv---IesrSl 39 (61)
T PF08222_consen 14 VGITRSVIVNALRKLESAGV---IESRSL 39 (61)
T ss_dssp HT--HHHHHHHHHHHHHTTS---EEEEET
T ss_pred hCccHHHHHHHHHHHHhcCc---eeeccc
Confidence 48999999999998877786 666654
No 32
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=29.06 E-value=60 Score=26.41 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHhhhhhhCCCcceEEEEe----eCHHHHhccceeeeecCc
Q 019507 244 ILSGCTAKRLLELAPKLVEQGRLKSVKTAN----LTVDEAKGAAEMMYVGST 291 (340)
Q Consensus 244 iL~GItR~~ll~la~~~~~~G~~~~v~E~~----i~~~dL~~adEvfltnS~ 291 (340)
.|-||+|..+-++.+. ++ .+++-+. .+..-|...|-+|+|++.
T Consensus 5 ~LtGIs~~vie~l~~~----~~-rTieiRsa~N~~tv~rl~~GDlVFlT~~~ 51 (122)
T COG1935 5 ALTGISRRVIESLLRN----PI-RTIEIRSARNLLTVLRLHEGDLVFLTSTS 51 (122)
T ss_pred EEechhHHHHHHHHhC----Cc-eEEEEEcccchHHhhcCCCCCEEEEehhH
Confidence 4789999988777664 55 3455443 345556667999999875
No 33
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=33 Score=31.60 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred CEEEcCCCCCccccHH----HHHHHHHhhhhhhCCCcceEEEEeeCHHHHh
Q 019507 234 KELVLPFFDKILSGCT----AKRLLELAPKLVEQGRLKSVKTANLTVDEAK 280 (340)
Q Consensus 234 ~~l~TP~l~~iL~GIt----R~~ll~la~~~~~~G~~~~v~E~~i~~~dL~ 280 (340)
.+.+|||-+|.||+=| |.++|.+.++ ..+|..++.+|+.
T Consensus 30 ~TYitPPG~GFlP~~TA~HHr~~il~Lv~~--------al~ea~v~~~diD 72 (336)
T KOG2708|consen 30 HTYITPPGEGFLPRDTARHHRAWILGLVKQ--------ALEEAGVTSDDID 72 (336)
T ss_pred ccccCCCCCCCCcchhHHHHHHHHHHHHHH--------HHHHcCCChhhCC
Confidence 5788999889999988 5567777665 3566777777664
No 34
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=25.71 E-value=2.2e+02 Score=21.93 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHhhhhhhCCCcceEE---------EEeeCHHHHhccceeeeecCccCeEEEEEECCeecC
Q 019507 252 RLLELAPKLVEQGRLKSVK---------TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIG 306 (340)
Q Consensus 252 ~ll~la~~~~~~G~~~~v~---------E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~ 306 (340)
.+-+.|++. |+ .+. +..++.+++..||-+++++.... .-.++.++++-
T Consensus 20 ~L~~aa~~~---g~--~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~--~~~rf~gk~v~ 76 (96)
T cd05569 20 ALEKAAKKL---GW--EIKVETQGSLGIENELTAEDIAEADAVILAADVPV--DDERFAGKRVY 76 (96)
T ss_pred HHHHHHHHC---CC--eEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCC--chhhhCCCeEE
Confidence 344566666 87 555 45577799999999998887542 12667776553
No 35
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=23.01 E-value=2.7e+02 Score=19.73 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=33.4
Q ss_pred eecCHHhHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHcCCCCceEEEEEe
Q 019507 84 YLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQLTAASQCKKGTLRFWLT 136 (340)
Q Consensus 84 ~~~~l~~Hl~RL~~Sa~~l~i~~p-~~~~~l~~~i~~li~~~~~~~~~lRi~vt 136 (340)
+-.+-.+-+++|...++..++.+. .+.+...+.+.+ -++....|++|+-
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~----lgl~~~vvKVWfq 54 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEE----IGVTRKVFKVWMH 54 (58)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH----hCCCHHHeeeecc
Confidence 344567789999999999987332 355544444443 4888888998864
No 36
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=22.99 E-value=81 Score=24.30 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=31.6
Q ss_pred ccccceeCCEEeCCCcceeccCCcccccccceeeee-eeeCC
Q 019507 43 AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTA-IILNG 83 (340)
Q Consensus 43 ~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtl-rv~~G 83 (340)
.++-.++|+.-.+.....|+.++.+.+||+|.-|+- ...-|
T Consensus 21 gh~hlliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I~L~PG 62 (87)
T PF14347_consen 21 GHHHLLIDGDGPPLANEPIPFNINGVHYGKGQTELNIELPPG 62 (87)
T ss_pred ccEEEEECCCCCcCCCCeeeecCCeEEeCCCEEEEEEEeCCC
Confidence 344556788887777778999999999999998873 44445
No 37
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=22.72 E-value=75 Score=26.08 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHhhhhhhCCCcceEEEEe----eCHHHHhccceeeeecCc
Q 019507 244 ILSGCTAKRLLELAPKLVEQGRLKSVKTAN----LTVDEAKGAAEMMYVGST 291 (340)
Q Consensus 244 iL~GItR~~ll~la~~~~~~G~~~~v~E~~----i~~~dL~~adEvfltnS~ 291 (340)
+|-||.|+.+=++.+. .+ .+++-+. +++..+...|-+|+|++.
T Consensus 5 aLTGIs~~vi~eL~~~----~~-RTiEirSa~N~~~~~~~~~Gd~VFlT~~~ 51 (119)
T PF04322_consen 5 ALTGISRRVIDELKKN----HI-RTIEIRSAHNVIALESLDPGDRVFLTSVS 51 (119)
T ss_pred EEeccCHHHHHHHHhC----Cc-eEEEEEcchheeeeecCCCCCEEEEecCC
Confidence 4889999998887664 33 3455443 566667777999999875
No 38
>KOG0378 consensus 40S ribosomal protein S4 [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=2.2e+02 Score=26.33 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=25.5
Q ss_pred HcCCCEEEE-EcCCCcEEecCCceEEEEEeCCE-EEc
Q 019507 204 DKGASASIW-IDEDGYVAEGPNVNVAFITHDKE-LVL 238 (340)
Q Consensus 204 ~~G~de~Ll-ld~~G~V~E~s~sNi~fv~k~~~-l~T 238 (340)
-.|+.|++. .|.+|+--.+-.+|+|.+.++++ |++
T Consensus 201 h~G~f~vvhvkdt~gnsFatrLsNifvIgkgnKpwis 237 (263)
T KOG0378|consen 201 HPGSFDVVHVKDTNGNSFATRLSNIFVIGEGNKPWIS 237 (263)
T ss_pred CCCceEEEEEEecCCcEeeeeeccEEEEecCCCcccc
Confidence 457666554 58899999999999966666654 554
Done!