RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019507
(340 letters)
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 563 bits (1452), Expect = 0.0
Identities = 208/330 (63%), Positives = 258/330 (78%), Gaps = 1/330 (0%)
Query: 11 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 70
GS K S++E++Q+LQ KWS KK+ + AMYSS+ GGI DPA MVIP+DDHMVHR
Sbjct: 7 GSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHR 66
Query: 71 GHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGT 130
GHGVFDTA I +G+LYELD HLDRFLRSA A+I PF R+TLR IL+Q AAS C+ G+
Sbjct: 67 GHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGS 126
Query: 131 LRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQC-KEGVKVITSSIPMKPRLFATVKN 189
LR+WL+AGPG F LSP+GC AFYAVVI+D ++Q EGVKV+TSS+P+KP FATVK+
Sbjct: 127 LRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKS 186
Query: 190 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 249
VNYLPN L++MEAE++GA A IW+DE+G+VAEGPN+NVAF+T+D ELVLP FDKILSGCT
Sbjct: 187 VNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCT 246
Query: 250 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN 309
A+R+LELAP+LV G L+ VK ++V+EAK A EMM +GS +P+L I WD QPIGDG
Sbjct: 247 ARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGK 306
Query: 310 VGELTMALSDLLWEDMVAGPETQRHCVSYD 339
VG +T+AL DLL +DM +GP R V Y
Sbjct: 307 VGPITLALHDLLLDDMRSGPPGVRTPVPYG 336
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 225 bits (575), Expect = 9e-73
Identities = 95/260 (36%), Positives = 140/260 (53%), Gaps = 14/260 (5%)
Query: 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 124
D G GVF+T L+G L+ LD HL R RSA I LR+ L L AA+
Sbjct: 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSARRLGIP-EPDLPRLRAALESLLAAN 59
Query: 125 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPM-KPRL 183
+G +R L+ GPG +P+ CP A Y VI + ++GV++IT + + + L
Sbjct: 60 DIDEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQPL 119
Query: 184 FATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK 243
A +K++NYL NVLAK EA D+GA ++++D DG V EG N+ F+ D ELV P D+
Sbjct: 120 LAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVK-DGELVTPSLDR 178
Query: 244 -ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLA-ITVWD 301
L+G T +R++ELA V L +++ AA+ ++ ++L +A +T D
Sbjct: 179 GGLAGITRQRVIELAAAKGYA-----VDERPLRLEDLL-AADEAFLTNSLLGVAPVTAID 232
Query: 302 EQPIGDGNVGELTMALSDLL 321
+ DG G LT AL +LL
Sbjct: 233 D---HDGPPGPLTRALRELL 249
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 187 bits (476), Expect = 8e-58
Identities = 90/262 (34%), Positives = 126/262 (48%), Gaps = 11/262 (4%)
Query: 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 124
D +H G GVF+ G L+ LD HLDR RSA + P+ R LR L +L AA+
Sbjct: 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN 60
Query: 125 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVI--DDDFSQCKEGVKVITSSIPMK-- 180
+R LT G G ++P P F ++GV++ITS +
Sbjct: 61 NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAA 120
Query: 181 PRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPF 240
P K L +VLAK EA + GA ++ +D++GYV EG NV FI D ELV P
Sbjct: 121 PGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNV-FIVKDGELVTPP 179
Query: 241 FD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITV 299
D IL G T ++ELA +L V+ +++DE A E+ G+ + +T
Sbjct: 180 LDGGILPGITRDSVIELAKEL-----GIKVEERPISLDELYAADEVFLTGTAAEVTPVTE 234
Query: 300 WDEQPIGDGNVGELTMALSDLL 321
D + IGDG G +T L +LL
Sbjct: 235 IDGRGIGDGKPGPVTRKLRELL 256
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 147 bits (373), Expect = 3e-42
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 14/278 (5%)
Query: 49 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPF 108
G + + + D G GV++ + NG + LD HLDR RSA RI P+
Sbjct: 2 LNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPY 61
Query: 109 PRSTLRSILVQLTAASQCKKGTLRFWLT--AGPGDFLLSPAGCPTSAFYAVVIDDDFSQC 166
R L+ ++ +L A ++ +G + +T GP PT + ++
Sbjct: 62 TREELKELIRELVAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAEL 121
Query: 167 KE-GVKVITSSIP--MKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 223
E GV+VIT ++ +K++N L NVLAK EA++ GA +I +D DG V EG
Sbjct: 122 LEKGVRVITVPDIRWLRCD----IKSLNLLNNVLAKQEAKEAGADEAILLDADGLVTEGS 177
Query: 224 NVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 283
+ NV + + + P + IL G T ++ELA +L + V+ +++E A
Sbjct: 178 SSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKEL----GIP-VEERPFSLEELYTAD 232
Query: 284 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 321
E+ +T ++ + D +PIGDG G +T L +
Sbjct: 233 EVFLTSTTAEVMPVVEIDGRPIGDGKPGPVTKRLREAY 270
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 131 bits (330), Expect = 2e-36
Identities = 79/239 (33%), Positives = 109/239 (45%), Gaps = 15/239 (6%)
Query: 88 LDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS-QCKKGTLRFWLTAGPGDFLLSP 146
LD HL+R RSA A I P LR I+ +L A+ G LR ++ G G LSP
Sbjct: 3 LDEHLERLRRSA-KALIGLPLSIEDLRKIIQELLEANGPAGSGRLRILVSRGDGGRGLSP 61
Query: 147 AGCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKME-AE 203
+++ + VK+ SS P+ PR A K NYL NVLA + AE
Sbjct: 62 PEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPV-PRPLAGHKTTNYLDNVLAALRAAE 120
Query: 204 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVE 262
G ++ +DEDG V EG N+ FI L P + IL G T + LL+LA +L
Sbjct: 121 RAGFDDALLLDEDGNVTEGSTSNI-FIVKGGTLYTPPLESGILPGITRQALLDLAKELG- 178
Query: 263 QGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 321
V+ LT+ + + A E S + +T D + GN G +T L +LL
Sbjct: 179 ----IEVEERPLTLADLQEADEAFLTNSLRGVTPVTSIDGRIF--GNPGPITAKLRELL 231
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 130 bits (330), Expect = 8e-36
Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 20/282 (7%)
Query: 51 GIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPR 110
G ++ + + D +H G GVF+T NG L+ LD HL R RSA + P
Sbjct: 8 GELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESE 67
Query: 111 STLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGC-PTSAFYAVVIDDDFS--QCK 167
+ ++ L A + G L G G L PT A + + +
Sbjct: 68 EEIELLIQLLLAKNNLVPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLE 127
Query: 168 EGVKVITSSIPMKPR--LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNV 225
+GV ++ SS + A K NYL +VLAK EA+ GA ++ +DEDGYV EG
Sbjct: 128 KGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGS 187
Query: 226 NVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKG 281
NV F+ D LV P IL G T LLELA +L VE+ +T+++ K
Sbjct: 188 NVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERP--------ITLEDLKQ 239
Query: 282 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
A E+ + + + + D + G G +T L +LL +
Sbjct: 240 ADEVFLTNTAAGVTPVGLIDGRV---GQPGPVTKKLRELLTD 278
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 125 bits (317), Expect = 7e-34
Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
+ I+D G+++ + +G L +LD HL R RS RI+ P R+ L +L +L
Sbjct: 19 VHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLREL 78
Query: 121 TAASQCKKGTLRFWLTAG--PGDFLLSPAGCPTSAFY---AVVIDDDFSQCKEGVKVITS 175
++ ++G + +T G D + A S +V + + G+KVIT
Sbjct: 79 IRRNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVIT- 137
Query: 176 SIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+P +K+V LPNVLAK A++ GA + +D DG+V EG + N +T D +
Sbjct: 138 -VPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGK 195
Query: 236 LVL-PFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 294
LV P + IL G T L++LA +L L+ V+ T+ EA A E ++ +
Sbjct: 196 LVTRPADNFILPGITRHTLIDLAKEL----GLE-VEERPFTLQEAYAAREAFITAASSFV 250
Query: 295 LAITVWDEQPIGDGNVGELTMAL 317
+ D + IG+G G + L
Sbjct: 251 FPVVQIDGKQIGNGKPGPIAKRL 273
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 102 bits (257), Expect = 3e-25
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 30/273 (10%)
Query: 60 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 119
+ + DH G GVF+ NG ++ L H+DR SA + + P + + I+++
Sbjct: 18 KVSVFDHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLE 77
Query: 120 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD-------DFSQCKEGVKV 172
+ + +R ++ G GD L P CP V I + + + +G+KV
Sbjct: 78 TLRKNNLRDAYIRLVVSRGVGDLGLDPRKCPKPT--VVCIAEPIGLYPGELYE--KGLKV 133
Query: 173 ITSSI------PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 226
IT S + P+ VK++NYL N+LAK+EA G +I ++++GYVAEG N
Sbjct: 134 ITVSTRRNRPDALSPQ----VKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVAEGTGDN 189
Query: 227 VAFITHDKELVLPF-FDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAE 284
+ FI + +L+ P + L G T ++E+A +L + V+ T+ + A E
Sbjct: 190 I-FIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIP------VREELFTLHDLYTADE 242
Query: 285 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 317
+ G+ ++ + D + IGDG G +T L
Sbjct: 243 VFLTGTAAEVIPVVKVDGRVIGDGKPGPITKKL 275
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 99.0 bits (247), Expect = 5e-24
Identities = 80/280 (28%), Positives = 120/280 (42%), Gaps = 23/280 (8%)
Query: 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 106
++ G +++ I I+D G GV++ + NG L+ ++ H+DR SA RI
Sbjct: 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDI 61
Query: 107 PFPRSTLRSILVQLTAASQCKKGTLRFWLTAG--------PGDFLLSPAGCPTSAFYAVV 158
P+ + L +L +L + G + F +T G P + P Y
Sbjct: 62 PYTKEELHQLLHELVEKNNLNTGHVYFQVTRGVAPRNHQFPAGTVK-----PVITAYTKE 116
Query: 159 IDDDFSQCKEGVKVITSSIPMKPR-LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDG 217
+ ++GVK IT R L +K++N L NVLAK EA +KGA +I G
Sbjct: 117 VPRPEENLEKGVKAITVE---DIRWLRCDIKSLNLLGNVLAKQEAHEKGAYEAILH-RGG 172
Query: 218 YVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVD 277
V EG + NV I P + IL+G T +L A E+ + VK T +
Sbjct: 173 TVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACA----EENGIP-VKEEPFTKE 227
Query: 278 EAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 317
E A E+ +T + + D Q IGDG G T L
Sbjct: 228 ELLNADEVFVSSTTAEITPVIEIDGQQIGDGKPGPWTRQL 267
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 98.2 bits (245), Expect = 2e-23
Identities = 76/284 (26%), Positives = 121/284 (42%), Gaps = 24/284 (8%)
Query: 65 DHMVHRGHGVFDTAIILNG----YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
H +H G GVF+ + ++ L H+ R SA R+ P+ + L +
Sbjct: 18 THALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRET 77
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSP-AGCPTSAFYAV-----VIDDDFSQCKEGVKVIT 174
+ + +R + G GD L+P AG A + ++ + +G+
Sbjct: 78 LRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALE--KGIDAKV 135
Query: 175 SSIP-MKPRLFAT-VKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 231
SS P T K NYL ++LAK EA G +I +D +GYVAEG N+ FI
Sbjct: 136 SSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIV 194
Query: 232 HDKELVLP-FFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGS 290
D L P IL G T ++ LA +L + V ++ +E A E + G+
Sbjct: 195 KDGVLFTPPVTSSILPGITRDTVITLAKELGIE-----VVEQPISREELYTADEAFFTGT 249
Query: 291 TLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRH 334
+ I D + IG+G G +T L + + D+V G T+ +
Sbjct: 250 AAEITPIREVDGRKIGNGRRGPVTKKLQEAFF-DLVTG-GTEDY 291
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 94.6 bits (235), Expect = 3e-22
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 18/297 (6%)
Query: 51 GIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPR 110
G ++ V+ + DH G GVF+ G ++ L H+ R SA S ++ P
Sbjct: 10 GEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLYESAKSILLTIPLTV 69
Query: 111 STLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD---FSQ-- 165
+ ++Q ++ +R ++ G GD L P C + ++I + F Q
Sbjct: 70 DEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS--VIIIAEQLKLFPQEF 127
Query: 166 CKEGVKVIT--SSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 223
G+ V++ S L +K++NYL NVL K+EA G ++ +++ GYV EG
Sbjct: 128 YDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQGYVCEGS 187
Query: 224 NVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 283
NV + K L P + L G T ++EL +L + T + A
Sbjct: 188 GDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLS-----IPCEERPFTRHDVYVAD 242
Query: 284 EMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSD----LLWEDMVAGPETQRHCV 336
E+ G+ L+ + D + IGDG G +T L++ L E V P +
Sbjct: 243 EVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTEEFKKLTRERGVRVPGLAESLL 299
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 91.6 bits (228), Expect = 4e-21
Identities = 68/244 (27%), Positives = 98/244 (40%), Gaps = 29/244 (11%)
Query: 53 ILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRST 112
+ DP+ ++ DD RG GVF+T ++ +G L+ HL+R RSA + P
Sbjct: 20 VHDPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEPDLDRW 79
Query: 113 LRSILVQLTAASQCKK----GTLRFWLTAGPGDFLLSPAGCPTS-AFYAVVIDDDFSQCK 167
R++ A + + LR + G G PT+ + V + +
Sbjct: 80 RRAV---ELAIEEWRAPEDEAALRLVYSRG-----RESGGAPTAWVTVSPVPERVARARR 131
Query: 168 EGVKVITSSI--------PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYV 219
EGV VIT P L A K ++Y N+ A A +GA I+ DGYV
Sbjct: 132 EGVSVITLDRGYPSDAAERA-PWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDGYV 190
Query: 220 AEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 278
EGP V I D L+ P IL G T L E+A E+G + L +
Sbjct: 191 LEGPTSTV-VIATDDRLLTPPPWYGILPGTTQAALFEVA---REKG--WDCEYRALRPAD 244
Query: 279 AKGA 282
A
Sbjct: 245 LFAA 248
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 81.1 bits (201), Expect = 1e-17
Identities = 77/303 (25%), Positives = 113/303 (37%), Gaps = 60/303 (19%)
Query: 61 IPIDDHMVHRGHGVFD-----TAIILNGYLYELDVHLDRFLRSAVSARISS--PFPRSTL 113
+ H +H G VF+ L+ D + +R R SAR PF
Sbjct: 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNR---SARRLGLPPFSVEEF 58
Query: 114 RSILVQLTAASQCKKGTLRFWLTAGPGDFLLSP----------AGCPTSAFYAVVI---D 160
+ +L + G + P +AV
Sbjct: 59 IDAIKELVKLDA------DWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVG 112
Query: 161 DDFSQCKEGVKVITSSI----PMKPRLFATVKNV--NYLPNVLAKMEAEDKGASASIWID 214
F ++GV + SS P P NY ++LA+ EA +KG ++W+D
Sbjct: 113 AYFKGGEKGVSALVSSFRRAAPGGP----GAAKAGGNYAASLLAQKEAAEKGYDQALWLD 168
Query: 215 -EDGYVAEGPNVNVAFITHDKELVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTA 272
GYVAE +N+ F+ D EL+ P D IL G T +LELA +K V+
Sbjct: 169 GAHGYVAEVGTMNIFFVK-DGELITPPLDGSILPGITRDSILELA----RDLGIK-VEER 222
Query: 273 NLTVDEAKGAAEMMYVGSTLPLLAITV-------WDEQPIGDGNVGELTMALSDLLWEDM 325
+T DE A E+ G+ A V + + G+G VG +T L DLL D+
Sbjct: 223 PITRDELYEADEVFATGT-----AAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLLT-DI 276
Query: 326 VAG 328
G
Sbjct: 277 QYG 279
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 76.2 bits (187), Expect = 1e-15
Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 11/260 (4%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
I +++ + G GV++ + G + LD H+ R RS ++ PF ++ L ++L +L
Sbjct: 23 IELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKAELITLLYKL 82
Query: 121 TAASQC-KKGTLRFWLTAG--PGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSI 177
+ + GT+ ++ G S PT Y + + GV+ I+
Sbjct: 83 IENNNFHEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISE-- 140
Query: 178 PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELV 237
P L +K++N LPN+LA +AE KG ++++ +G V EG + N I +
Sbjct: 141 PDTRWLRCDIKSLNLLPNILAATKAERKGCKEALFV-RNGTVTEGSHSNFFLIKNGTLYT 199
Query: 238 LPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAI 297
P IL+G + +L LA L R+ V+ +V + A E + G+T+ +L +
Sbjct: 200 HPANHLILNGIIRQYVLSLAKTL----RI-PVQEELFSVRDVYQADECFFTGTTIEILPM 254
Query: 298 TVWDEQPIGDGNVGELTMAL 317
T D I DG VG +T L
Sbjct: 255 THLDGTAIQDGQVGPITKML 274
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 76.0 bits (188), Expect = 1e-15
Identities = 78/301 (25%), Positives = 120/301 (39%), Gaps = 55/301 (18%)
Query: 61 IPIDD-------HMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSP 107
+P +D H +H G GVF DT ++ L H R SA R+ P
Sbjct: 16 VPWEDAKVHVLTHALHYGTGVFEGIRAYDTP--KGPAIFRLREHTKRLFNSAKILRMEIP 73
Query: 108 FPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV-----IDDD 162
+ L ++ + K +R + G + P G PT A + ++
Sbjct: 74 YSVDELMEAQREVVRKNNLKSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEE 133
Query: 163 FSQCKEGVKVITSS--------IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWID 214
++G++V SS IP + + NYL ++LAK EA G ++ +D
Sbjct: 134 --ALEKGIRVKVSSWTRHAPNSIPTRAKASG-----NYLNSILAKTEARRNGYDEALLLD 186
Query: 215 EDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL---VEQGRLKSVK 270
+GYV+EG N+ FI D L P IL G T ++ LA L V + R+ +
Sbjct: 187 VEGYVSEGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRIT--R 243
Query: 271 TANLTVDEA--KG-AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVA 327
DE G AAE+ + D + IG+G G +T L + D+V
Sbjct: 244 DELYIADEVFFTGTAAEVTPIREV---------DGRQIGNGKRGPITEKLQSAYF-DIVR 293
Query: 328 G 328
G
Sbjct: 294 G 294
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 74.6 bits (184), Expect = 3e-15
Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 23/265 (8%)
Query: 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 124
DH G GVF+T I NG+ + LD H DR + + +I + + IL L +
Sbjct: 20 DHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKN 79
Query: 125 QCKKGTLRFWLTAGPGDFLLSPAGC--PTSAFYAVVID-DDFSQCKEGV--KVITSSIPM 179
+ +RF ++AG G+ L PT Y + KEGV K ++
Sbjct: 80 GLENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVLKQRRNTPEG 139
Query: 180 KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLP 239
RL K+ +YL N+L K E + I++ E+GYVAEG N+ ++ D + P
Sbjct: 140 AFRL----KSHHYLNNILGKREIGNDPNKEGIFLTEEGYVAEGIVSNLFWVKGDI-VYTP 194
Query: 240 FFDK-ILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLL 295
+ IL+G T ++++ +L V++G T +E A E+ S ++
Sbjct: 195 SLETGILNGITRAFVIKVLEELGIEVKEGF--------YTKEELLSADEVFVTNSIQEIV 246
Query: 296 AITVWDEQPIGDGNVGELTMALSDL 320
+T +E+ G VG +T L +L
Sbjct: 247 PLTRIEERDF-PGKVGMVTKRLQNL 270
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 55.1 bits (133), Expect = 1e-08
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 32/150 (21%)
Query: 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVL-PFFDKILSG 247
NY ++LA+ +A ++G +++D E Y+ E +N FIT D ELV P IL G
Sbjct: 159 NYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPG 218
Query: 248 CTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEM-MYVGSTLPLLAITVWDEQ 303
T LL+LA L VE+ R + +DE K E V + IT
Sbjct: 219 ITRDSLLQLAKDLGMEVEERR--------IDIDELKAFVEAGEEVFACGTAAVIT----- 265
Query: 304 PIG------------DGNVGELTMALSDLL 321
P+G G GE+T AL D L
Sbjct: 266 PVGEIQHGGKEVVFASGQPGEVTKALYDEL 295
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 53.7 bits (130), Expect = 3e-08
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 25/175 (14%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP-RSTLRSILVQ 119
+ + D G G F TA + +G + L HL R L+ A R++ P + L + Q
Sbjct: 12 LSVSDRSTQYGDGCFTTARVRDGQVSLLSRHLQR-LQDAC-ERLAIPLDDWAQLEQEMKQ 69
Query: 120 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS----------AFYAVVIDDDFSQCKEG 169
A++ + G L+ ++ G G SPAGC A Y+ ++G
Sbjct: 70 --LAAELENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYS-------RWREQG 120
Query: 170 VKVITSSIPM--KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 222
+ + + P L A +K++N L VL + E E A ++ +D +G+V E
Sbjct: 121 ITLALCPTRLGRNPLL-AGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIEC 174
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 53.4 bits (129), Expect = 4e-08
Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP-RSTLRSILVQ 119
I + D + G G F TA + NG + LD+HL+R +A AR+ P P LR + Q
Sbjct: 10 ISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAA--ARLGIPLPDWDALREEMAQ 67
Query: 120 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS----------AFYAVVIDDDFSQCKEG 169
L A+ G L+ ++ G G SP GC A Y+ + Q +G
Sbjct: 68 L--AAGYSLGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYS-----AWQQ--QG 118
Query: 170 VKVITSSIPM--KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNV 227
+++ S + + P L A +K++N L VL K E E+ A ++ +D DG V E N+
Sbjct: 119 IRLGVSPVRLGRNP-LLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANI 177
Query: 228 AFITHDKELVLPFFDKILSGCTAK-----RLLELAPKL 260
F ++ P LS C +L L P L
Sbjct: 178 -FWRKGNQVFTP----DLSYCGVAGVMRQHVLALLPAL 210
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 52.8 bits (128), Expect = 9e-08
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 191 NYLPNVLAKMEAEDKGASASIWID--EDGYVAEGPNVNVAFITHDKELVLPFFDKILSGC 248
NY ++LA+ EA++KG +++D E Y+ E +N FIT D + P IL G
Sbjct: 200 NYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGI 259
Query: 249 TAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKG----------AAEMMYVGSTLPLL 295
T LL+LA L VE+ V D A G AA + +G
Sbjct: 260 TRDSLLQLAEDLGLTVEERP---VSIDEWQADAASGEFTEAFACGTAAVITPIGG----- 311
Query: 296 AITVWD-EQPIGDGNVGELTMALSDLL 321
I D E IGDG VG +T L D L
Sbjct: 312 -IKYKDKEFVIGDGEVGPVTQKLYDEL 337
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 41.1 bits (97), Expect = 4e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 192 YLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAK 251
Y+ ++K AE KG + ++ +D GYVAE N+ F+ D + P D L G T +
Sbjct: 162 YMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFVK-DGVIHTPTPDCFLDGITRQ 220
Query: 252 RLLELA 257
++ELA
Sbjct: 221 TVIELA 226
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 33.5 bits (77), Expect = 0.18
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 19/153 (12%)
Query: 136 TAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRL--FATVKNVNYL 193
P D +L G Y +D+ + K GV P+KP L ++ + +
Sbjct: 70 EQAPEDAILQRIG----KLYRSFMDEAKRE-KAGVD------PLKPELAEIDSLASFSDF 118
Query: 194 PNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRL 253
L ++E +G + D + V + + L LP L
Sbjct: 119 AAALGQLERAGQGNPFGFSVSPD---FKDSTRYVLYFSQSG-LGLPDTTYYRDE-QHAEL 173
Query: 254 LELAPKLVEQGRLKSVKTANLTVDEAKGAAEMM 286
L + V + L + D AK A ++
Sbjct: 174 LAAYKEHVAR-MLGLFGFSEEEEDAAKHALRVV 205
>gnl|CDD|129679 TIGR00591, phr2, photolyase PhrII. All proteins in this family for
which functions are known are DNA-photolyases used for
the direct repair of UV irradiation induced DNA damage.
Some repair 6-4 photoproducts while others repair
cyclobutane pyrimidine dimers. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 454
Score = 32.1 bits (73), Expect = 0.44
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 123 ASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS------QCKEGVKVITSS 176
A++C++ + F L GP LL P A AVV DFS Q E V +
Sbjct: 84 ANECERLIIPFHLLDGPPKELL-PYFVDLHAAAAVV--TDFSPLRQPEQWDEAVGKLLPK 140
Query: 177 IPMKPRLFATVKNVNYLP 194
F V N +P
Sbjct: 141 DV----PFQQVDAHNVVP 154
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 30.7 bits (70), Expect = 1.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 63 IDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA 122
ID + ++D AI LN + ++ D LD A+ A + P LT
Sbjct: 198 IDFYFACTDAFLYDLAITLNDWCFDEDGALDPERAQALLAGYQAVRP----------LTE 247
Query: 123 ASQ------CKKGTLRFWLT 136
A + + LRFWL+
Sbjct: 248 AERAALPIMLRGAALRFWLS 267
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 29.5 bits (67), Expect = 2.2
Identities = 59/242 (24%), Positives = 88/242 (36%), Gaps = 44/242 (18%)
Query: 65 DHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAAS 124
DH G VFD A G +LD+H R RSA + + + ++
Sbjct: 27 DHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEAL-------- 78
Query: 125 QCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD----DFSQCKE--------GVKV 172
++G RF + P F + V D F+ C E G +
Sbjct: 79 -AREGLKRF---DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSL 134
Query: 173 ITSSIPMKPRLFATVKNVN----YLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVA 228
S +P L + Y N A EA +G ++ +D G VAE NV
Sbjct: 135 TLSPF-RRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLGNVAETATSNV- 192
Query: 229 FITHDKELVLP-----FFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAA 283
F+ D + P F L+G T +R++ L L E G +V LT ++ A
Sbjct: 193 FMVKDGVVFTPVPNGTF----LNGITRQRVIAL---LREDG--VTVVETTLTYEDFLEAD 243
Query: 284 EM 285
E+
Sbjct: 244 EV 245
>gnl|CDD|220767 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 238 LPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAE 284
LP DK+L + A +L +L ++ K A E
Sbjct: 450 LPAVDKVLGKESKGDPEAYADRLYAGSKLTDPDGRLALLEGDKAAVE 496
>gnl|CDD|234130 TIGR03161, ribazole_CobZ, alpha-ribazole phosphatase CobZ.
Sequences in the seed alignment were the experimentally
characterized CobZ of the methanogenic archaeon
Methanosarcina mazei, and other archaeal proteins found
similarly next to or very near to other cobalamin
biosynthesis genes. CobZ replaces the
alpha-ribazole-phosphate phosphatase (EC 3.1.3.73)
called CobC in analogous bacterial pathways for
cobalamin biosynthesis under anaerobic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 140
Score = 28.1 bits (63), Expect = 3.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 271 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLL 321
N+ DE GAA Y+G L +D++ G + EL L D++
Sbjct: 79 PVNIVADELLGAALAEYIGGFKALFNFKRYDKKK--PGILAELPPFLDDVV 127
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 28.7 bits (65), Expect = 3.9
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 227 VAFITHDKELVLPFFDKILSGCTAKRLL 254
+ +THD LVL +FD++L + ++
Sbjct: 185 ILVVTHDLGLVLEYFDRVL--LLNRTVV 210
>gnl|CDD|223000 PHA03144, PHA03144, helicase-primase primase subunit; Provisional.
Length = 746
Score = 28.9 bits (65), Expect = 4.4
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 92 LDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGC-P 150
L LR+AV+ + R R +L + ++ FW P + P+ P
Sbjct: 599 LRALLRAAVADSADAETLRQAAREACDRLVLEAFARRLDAEFWSVPTP---ISDPSDPLP 655
Query: 151 TSAF-YAVVIDDDFSQCKEGVKVITSS-----IPMK----PRLFATVKNVNYLPNVLAKM 200
+AF ++D D + V+V +P P + + ++L +LA+
Sbjct: 656 AAAFRGGALLDADHGS-RRVVRVCGGDCEPVPVPWDLYPRPLVLPPIDCAHHLRPILAEA 714
Query: 201 EAEDKGASASIWIDEDGYVAEGP 223
E+ GA +++W +++ + P
Sbjct: 715 ESMLNGALSALWGEDEPFEVTYP 737
>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III
members of the HMG-box superfamily of DNA-binding
proteins. These proteins bind the minor groove of DNA
in a non-sequence specific fashion and contain two or
more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 26.4 bits (59), Expect = 5.4
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 8 AENGSEFKA-HMFSSSSELLQKLQEKWSSV---KKKPYPAMY 45
E + K + +S +E+ + L EKW + +KK Y
Sbjct: 13 QEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKA 54
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 28.3 bits (64), Expect = 5.9
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 271 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQ--PIGDGNVGEL 313
TA E E + +G P L + DE P+ G GEL
Sbjct: 257 TAYEVTPEPLSRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGEL 301
>gnl|CDD|235369 PRK05231, PRK05231, homoserine kinase; Provisional.
Length = 319
Score = 27.8 bits (63), Expect = 7.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 27/86 (31%)
Query: 74 VFDTAIILNGYLYELDVHLDR-----FLRSAVSARISSPFPRSTLRSILVQLTAASQ--- 125
++D AI LN + +E D LD L + S R LTAA +
Sbjct: 221 LYDVAITLNDWCFEADGSLDATKARALLAAYQSVR---------------PLTAAERAAL 265
Query: 126 ---CKKGTLRFWLTAGPGDFLLSPAG 148
+ LRFWL+ D+LL AG
Sbjct: 266 PVMLRGAALRFWLSR-LYDWLLPRAG 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,222,845
Number of extensions: 1666562
Number of successful extensions: 1479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 41
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)