RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019507
(340 letters)
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 149 bits (378), Expect = 3e-43
Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 22/271 (8%)
Query: 60 VIPIDDHMVHRGH---GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSI 116
ID R G+F+T + + +H +R SA I
Sbjct: 16 SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71
Query: 117 LVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSS 176
L+Q G ++ L+ GP L+ G + + ++S K V++I+ +
Sbjct: 72 LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQTF---NYSIQKHPVRLISIN 128
Query: 177 -IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+ K +K+VNYL ++A+ +A GA +++ + + +V E N+ F+ +
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANL-FLIENNI 187
Query: 236 LVLPFFDK-ILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLP 293
L P + IL G T RL+ + + V+ +LT + A + S
Sbjct: 188 LYTPRVEDGILPGITRARLISHCQQHKMS------VQEISLTKKRIEDADAVFLTNSLQG 241
Query: 294 LLAITVWDEQPIGDGNVGELTMALSDLLWED 324
+ + D + L LL +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 148 bits (375), Expect = 3e-42
Identities = 56/287 (19%), Positives = 99/287 (34%), Gaps = 31/287 (10%)
Query: 55 DPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFP---RS 111
+P + ++ DD + RG G+F+T +I +G+ + H +RF SA + P
Sbjct: 30 NPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPEPILEDWEK 89
Query: 112 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV------------- 158
+ + + + + + L+ G L+ + +
Sbjct: 90 ATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTS 149
Query: 159 -----IDDDFSQCKEGVKVITSSIPMKPR--LFATVKNVNYLPNVLAKMEAEDKGASASI 211
ID + + S + P L K + Y N+ A A+ G I
Sbjct: 150 SRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVI 209
Query: 212 WIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVK 270
+ D V EG V ++ P IL G T L A E+G K
Sbjct: 210 FTD-GDRVLEGATSTV-VSFKGDKIRTPSPGGDILPGTTQAALFAHAT---EKGW--RCK 262
Query: 271 TANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMAL 317
+L++D+ GA + V S + +T D + + + AL
Sbjct: 263 EKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKAL 309
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 146 bits (371), Expect = 3e-42
Identities = 48/263 (18%), Positives = 103/263 (39%), Gaps = 14/263 (5%)
Query: 60 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 119
+ + D G G F TA +++G + L H+ R + IS F + +
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEMK-- 68
Query: 120 LTAASQCKKGTLRFWLTAGPGDFLLSPAGC--PTSAFYAVVIDDDFSQCKE-GVKVITSS 176
T A++ + G L+ ++ G G S T + + + G+ + S
Sbjct: 69 -TLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP 127
Query: 177 IPM-KPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
+ + + A +K++N L VL + E A ++ +D +G+V E N+ F
Sbjct: 128 VRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANL-FWRKGNV 186
Query: 236 LVLPFFDK-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 294
+ P D+ ++G + + L + + + +++E+ A EM+ + +P+
Sbjct: 187 VYTPRLDQAGVNGIMRQFCIRLLAQS----SYQ-LVEVQASLEESLQADEMVICNALMPV 241
Query: 295 LAITVWDEQPIGDGNVGELTMAL 317
+ + + + E L
Sbjct: 242 MPVCACGDVSFSSATLYEYLAPL 264
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 145 bits (368), Expect = 2e-41
Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 28/276 (10%)
Query: 60 VIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQ 119
+ + D + G G+F+T + G L+ HL R R++ P + LR L+
Sbjct: 33 ELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGC--RRLAIPLDTAALRQELLA 90
Query: 120 LTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS-----QCKEGVKVIT 174
+ G + +T G G +P + ++ ++GV++
Sbjct: 91 F--CAALGDGVAKLIVTRGEGLRGYAPPAEASPR--RILSGSPRPAYPERHWQQGVRLFA 146
Query: 175 SSIPMKPR-LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHD 233
+ + L A +K++N L VLA+ E D G + + +D V EG N+ + D
Sbjct: 147 CRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNL-LLVLD 205
Query: 234 KELVLPFFDK-ILSGCTAKRLLELAPKL---VEQGRLKSVKTANLTVDEAKGAAEMMYVG 289
LV P + ++G LLE A + + +++ E A E+
Sbjct: 206 GTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRD--------VSMAELATADEVFLCN 257
Query: 290 STLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM 325
S + + DE VGELT L D L +D+
Sbjct: 258 SQFGIWPVRALDEHVWP---VGELTRKLQDQLRDDL 290
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 144 bits (366), Expect = 2e-41
Identities = 69/266 (25%), Positives = 107/266 (40%), Gaps = 17/266 (6%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
I +D G GV++ + NG ++ ++ H+DR SA RI+ P+ + +L +L
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSPAGC---PTSAFYAVVIDDDFSQCKEGVKVITSS- 176
++ G + F +T G P Y ++GVK
Sbjct: 77 VEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED 136
Query: 177 IPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS-ASIWIDEDGYVAEGPNVNVAFITHDKE 235
I +K++N L VLAK EA +KG A + + V EG + NV F D
Sbjct: 137 IRWLRC---DIKSLNLLGAVLAKQEAHEKGCYEA--ILHRNNTVTEGSSSNV-FGIKDGI 190
Query: 236 LV-LPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 294
L P + IL G T ++ A ++ + VK T EA E+ +T +
Sbjct: 191 LYTHPANNMILKGITRDVVIACANEI----NMP-VKEIPFTTHEALKMDELFVTSTTSEI 245
Query: 295 LAITVWDEQPIGDGNVGELTMALSDL 320
+ D + I DG VGE T L
Sbjct: 246 TPVIEIDGKLIRDGKVGEWTRKLQKQ 271
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 120 bits (303), Expect = 4e-32
Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 27/284 (9%)
Query: 49 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPF 108
+ G + + V++T + + H R RSA +
Sbjct: 17 WRGKFRRADEISLDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSL 76
Query: 109 PRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKE 168
+L + ++ ++ +L G+ L + +
Sbjct: 77 SFDEFTKVLKAGADEFK-QEVRIKVYLFPDSGEVLFVFSPLNIPDL------------ET 123
Query: 169 GVKVITSSI--PMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 226
GV+V S++ +K VLA+ E I + +G V EG N
Sbjct: 124 GVEVKISNVRRIPDLSTPPALKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGSFSN 181
Query: 227 VAFITHDKELVLPFFD-KILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAE 284
V F+ + +L+ P D IL G T + +++LA L + V+ + V E A E
Sbjct: 182 V-FLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIP------VEERVVWVWELFEADE 234
Query: 285 MMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 328
M ++ ++ + +E + G +T L + E V
Sbjct: 235 MFLTHTSAGVVPVRRLNEHSFFEEEPGPVTATLMENF-EPFVLN 277
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 118 bits (298), Expect = 5e-31
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 38/289 (13%)
Query: 61 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 114
I + H +H G GVF TA ++ L H R L SA ++ PF + TL
Sbjct: 45 IHVLTHTLHYGMGVFEGVRAYKTADG-GTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLE 103
Query: 115 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV-----IDDDFSQCKEG 169
+ + ++ + LR + G +S G A + ++ +G
Sbjct: 104 AAQRDVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGL--AKG 161
Query: 170 VKVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVA 220
++V TSS ++ K Y+ ++LA EA G ++ +D DGYV+
Sbjct: 162 IRVKTSSFTRHHVNVSMVR------AKASGWYVNSILANQEATADGYDEALLLDVDGYVS 215
Query: 221 EGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEA 279
EG N F+ + +L P L G T ++ LA + +E V +T DE
Sbjct: 216 EGSGENF-FLVNRGKLYTPDLASCLDGITRDTVITLAKEAGIE------VIEKRITRDEV 268
Query: 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 328
A E + G+ + I D + IG G G +T L D+V G
Sbjct: 269 YTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAF-FDVVNG 316
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 113 bits (285), Expect = 7e-30
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 18/219 (8%)
Query: 52 IILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRS 111
+L+ + + + + ++ G VF T G L+ HL R R A++ +S P +
Sbjct: 2 RLLNGTPLALALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEA 61
Query: 112 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVK 171
L + + + K LR T G G L +EGV+
Sbjct: 62 FLEDL--EALLRAFPKAPCLRLRFTVGEGVRLSEARPYAPLPLSLY---------REGVR 110
Query: 172 VITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFIT 231
V + + P L A K NYLP LA EA +GA + +D G+V +G + +
Sbjct: 111 VRLTGYRVHPDL-ARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSP-LLF 168
Query: 232 HDKELVLPFFDKILSGCTAKRLLELAPKL---VEQGRLK 267
+ L L + L G T +++ E A L VE+G +
Sbjct: 169 REGTLYLL--EGGLEGITREKVAEAARGLGLRVERGLFR 205
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 113 bits (286), Expect = 2e-29
Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 36/288 (12%)
Query: 61 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 114
+ H +H G VF +TA ++ L H+ RF SA R+ PF L
Sbjct: 22 TSVLSHALHYGTSVFEGIRAYETAK--GPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELE 79
Query: 115 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS--AFYAVVIDDDFSQ--CKEGV 170
+ ++ + + +R G ++P + A + ++G
Sbjct: 80 EAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGA 139
Query: 171 KVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAE 221
++ITSS +P K K NY+ + LAKMEA GA ++ +DE+GYVAE
Sbjct: 140 RLITSSWARFPANVMPGK------AKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAE 193
Query: 222 GPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAK 280
G N+ F D + L G T ++ +A L E V+ T D+
Sbjct: 194 GSGENL-FFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYE------VQVVRATRDQLY 246
Query: 281 GAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 328
A E+ G+ + +++ D +PIG G G + + L ++ + V G
Sbjct: 247 MADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVY-LEAVTG 293
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 110 bits (278), Expect = 2e-28
Identities = 59/289 (20%), Positives = 102/289 (35%), Gaps = 37/289 (12%)
Query: 61 IPIDDHMVHRGHGVF------DTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLR 114
+ + H +H G VF D+ ++ H+ R SA R L
Sbjct: 23 VHVMSHALHYGTSVFEGIRCYDSHK--GPVVFRHREHMQRLHDSAKIYRFPVSQSIDELM 80
Query: 115 SILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTS--AFYAVVIDDDFSQ--CKEGV 170
+ + +R + G ++P ++ A ++G+
Sbjct: 81 EACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGI 140
Query: 171 KVITSS--------IPMKPRLFATVKNV-NYLPNVLAKMEAEDKGASASIWIDEDGYVAE 221
+ SS IP K NYL ++L EA G I +D +GY++E
Sbjct: 141 DAMVSSWNRAAPNTIPTA------AKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISE 194
Query: 222 GPNVNVAFITHDKELVLP-FFDKILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEA 279
G N+ F D L P F L G T +++LA +L +E V+ L+ +
Sbjct: 195 GAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIE------VREQVLSRESL 247
Query: 280 KGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG 328
A E+ G+ + + D +G+G G +T + + G
Sbjct: 248 YLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAF-FGLFTG 295
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 98.1 bits (245), Expect = 2e-24
Identities = 42/231 (18%), Positives = 67/231 (29%), Gaps = 30/231 (12%)
Query: 65 DHMVHRGHGVFDTAIILNG-YLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAA 123
+ +T G D HL R SA A + + +L
Sbjct: 9 RDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSA--AELGFACDPQRIAEVLSDALDG 66
Query: 124 SQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPR- 182
++ R L GD S P A + + + + +
Sbjct: 67 AR-TAMRTRLALARN-GDATASAQ--PYEPLAA----------DKVWILRLARTRLDSQN 112
Query: 183 LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD 242
K A+ E A + +E G + EG NV D L P D
Sbjct: 113 TLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLATPRLD 172
Query: 243 K-ILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTL 292
+L G LL+ + A + D+ K A ++VG++L
Sbjct: 173 CGLLPGVLRAELLDEGR----------AEEAIYSYDDLKSAKA-LFVGNSL 212
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 69.4 bits (170), Expect = 3e-14
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 39/225 (17%)
Query: 73 GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLR 132
+F+T +I G + H R+ +S + L I+ + TA ++G +R
Sbjct: 6 PLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIR 65
Query: 133 FWLTAGPGDFLLSPA---GCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKN 189
+ D++L F V D K +
Sbjct: 66 CRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK-------------------FSD 106
Query: 190 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 249
L N+L + E D I I G V + N+ F + + + P +L G
Sbjct: 107 RTLLNNLLKQKEECD-----EIMIIRQGKVTDCSIGNLIFR-QNNQWITP-DKPLLEGTQ 159
Query: 250 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPL 294
+LLE K + + ++ E+ + + L
Sbjct: 160 RAKLLE----------QKKIIAREIFFEDLAQYEEIRLINAMNGL 194
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 59.6 bits (145), Expect = 4e-10
Identities = 66/327 (20%), Positives = 102/327 (31%), Gaps = 108/327 (33%)
Query: 11 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 70
G+ F HM + + W KP + L P + H
Sbjct: 50 GTVFTDHMLTVEW----SSEFGWEKPHIKPL--------QNLSLHPGSSAL-------HY 90
Query: 71 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 120
+F D I L++ ++++DR RSA R + P F + L + QL
Sbjct: 91 AVELFEGLKAFRGVDNKI----RLFQPNLNMDRMYRSA--VRATLPVFDKEELLECIQQL 144
Query: 121 TAASQCKKGTLRFWLTAGPGDFL--------------LSPAG--------CPTSAFYAVV 158
Q W+ L + P ++
Sbjct: 145 VKLDQE-------WVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF--- 194
Query: 159 IDDDFSQCKEGVKVITSSIPMKP-RLFATVKNV--------------NYLPNVLAKMEAE 203
G P L+A K V NY ++ A+ EA
Sbjct: 195 --------SSGT--------FNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAV 238
Query: 204 DKGASASIWID-EDGYVAEGPNVNVAFI----THDKELVLPFFD-KILSGCTAKRLLELA 257
D G +W+ ED + E +N+ ++EL P D IL G T + +L+LA
Sbjct: 239 DNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLA 298
Query: 258 PKLVEQGRLKSVKTANLTVDEAKGAAE 284
+ G K V LT+D+ A E
Sbjct: 299 H---QWGEFK-VSERYLTMDDLTTALE 321
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 56.8 bits (138), Expect = 3e-09
Identities = 62/327 (18%), Positives = 101/327 (30%), Gaps = 109/327 (33%)
Query: 11 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 70
G F HM + W + +P+ + L PA + H
Sbjct: 31 GKTFTDHMLMVEWN-----DKGWGQPRIQPF--------QNLTLHPASSSL-------HY 70
Query: 71 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 120
+F D + L+ +++DR LRSA R+ P F + L + +L
Sbjct: 71 SLQLFEGMKAFKGKDQQV----RLFRPWLNMDRMLRSA--MRLCLPSFDKLELLECIRRL 124
Query: 121 TAASQCKKGTLRFWLTAGPGDFL--------------LSPAG--------CPTSAFYAVV 158
+ W+ G L +S CP A++
Sbjct: 125 IEVD-------KDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYF--- 174
Query: 159 IDDDFSQCKEGVKVITSSIPMKP-RLFATVKNV--------------NYLPNVLAKMEAE 203
G + P L A + NY P VL + EA
Sbjct: 175 --------PGG--------SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 204 DKGASASIWID-EDGYVAEGPNVNVAFITHDK----ELVLPFFD-KILSGCTAKRLLELA 257
+G +W+ D + E +N+ + ELV P + IL G + LL++A
Sbjct: 219 KRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMA 278
Query: 258 PKLVEQGRLKSVKTANLTVDEAKGAAE 284
G + V +T+ + A E
Sbjct: 279 Q---TWGEFR-VVERTITMKQLLRALE 301
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 54.9 bits (133), Expect = 1e-08
Identities = 81/373 (21%), Positives = 125/373 (33%), Gaps = 117/373 (31%)
Query: 11 GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 70
G + HM S + E W + + PY G I LDP+ +V+ H
Sbjct: 36 GKYYTDHMVSIDY----TVDEGWHNAQVIPY--------GPIQLDPSAIVL-------HY 76
Query: 71 GHGVF---------DTAIILNGYLYELDVHLDRFLRSAVSARISSP-FPRSTLRSILVQL 120
G +F D +I + + + R SA R++ P P L QL
Sbjct: 77 GQEIFEGLKAYRWADGSI----VSFRPEANAARLQSSA--RRLAIPELPEEVFIESLRQL 130
Query: 121 TAASQCKKGTLRFWLTAGPGDFLL---------------SPAG--------CPTSAFYA- 156
A + W+ G+ L P+ P A++
Sbjct: 131 IAVDEK-------WVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183
Query: 157 ------VVIDDDFSQCKEG----VKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKG 206
V + ++ + G K NY ++LA+ +A + G
Sbjct: 184 GIKPVSVWLSHEYVRASPGGTGAAKFGG----------------NYAASLLAQAQAAEMG 227
Query: 207 ASASIWID--EDGYVAEGPNVNVAFITHD---KELVLPFFD-KILSGCTAKRLLELAPKL 260
+W+D E YV E +N+ F+ LV P +L G T LL+LA
Sbjct: 228 CDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDA 287
Query: 261 ---VEQGRLKSVK-----TANLTVDEAKG---AAEMMYVGSTLPLLAITVWDEQ-PIGDG 308
VE+ ++ V + E AA + V + D + I DG
Sbjct: 288 GFAVEERKI-DVDEWQKKAGAGEITEVFACGTAAVITPVSH------VKHHDGEFTIADG 340
Query: 309 NVGELTMALSDLL 321
GE+TMAL D L
Sbjct: 341 QPGEITMALRDTL 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-08
Identities = 62/452 (13%), Positives = 109/452 (24%), Gaps = 199/452 (44%)
Query: 14 FKAHMFS-------SSSELLQKLQEKWSSVKKKPYPAMYSSIFGG--------------- 51
A + + S+S L + + E + +IFGG
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEG----NAQLV-----AIFGGQGNTDDYFEELRDLY 177
Query: 52 ---------IILDPAMMVIPI----DDHMVHRGHGVFDTAIILNGYLYELDVHLDR-FLR 97
+I A + + D G + + +L D+ +L
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LN----ILEWLENPSNTPDKDYLL 232
Query: 98 SA-VSARISSPFPRSTLRSILVQLTAASQ----CKKGTLRFWLTAGPGDF---LLSPAGC 149
S +S P L+ + + K PG+ L G
Sbjct: 233 SIPIS------CP-------LIGVIQLAHYVVTAKLLGFT------PGELRSYLKGATGH 273
Query: 150 PTSAFYAVVI-----DDDF---------------SQCKEGV-------KVITSSI----- 177
AV I + F +C E ++ S+
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 178 ---PM-------KPRLFATVKNVN-YLPNVLAKMEAEDKGASASIWIDEDGYVAEGP--- 223
PM + ++ V N +LP K S+ V GP
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLP--------AGKQVEISLVNGAKNLVVSGPPQS 385
Query: 224 --NVNVAF-------------ITHDKE--------LVL--PFFDKILSGCTAKRLLELAP 258
+N+ I + L + PF +L + +L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 259 KLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN-----VGEL 313
V + + I V+D DG+ G +
Sbjct: 446 NNVS------------------------FNAKD---IQIPVYD---TFDGSDLRVLSGSI 475
Query: 314 TMALSDLL------WEDMVAGPETQRHCVSYD 339
+ + D + WE T H + +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKAT--HILDFG 505
Score = 40.0 bits (93), Expect = 0.001
Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 83/256 (32%)
Query: 112 TLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSA-FYAVVIDDDFSQCKEGV 170
+ R + L+ G+L L+ PT++ F A + + F++
Sbjct: 5 STRPL--TLS------HGSLEH-------VLLV-----PTASFFIASQLQEQFNK----- 39
Query: 171 KVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS-ASIWIDEDGYVAEG--PNVNV 227
LP A+D+ + A + GYV+ P+
Sbjct: 40 ---------------------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 228 AFITHDKELVLPFFDKILSG----CTAKRLLELAPKLVEQGR--LKSVKTANLTVDE--- 278
F + F + L G A +LL+ + + + +K+ TA +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 279 -----------AKGAAEMMYV----GSTLPLLAITVWDE-QPIGD---GNVGELTMALSD 319
+G A+++ + G+T ++E + + VG+L ++
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTD-----DYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 320 LLWEDMVAGPETQRHC 335
L E + + ++
Sbjct: 194 TLSELIRTTLDAEKVF 209
Score = 36.2 bits (83), Expect = 0.018
Identities = 59/305 (19%), Positives = 95/305 (31%), Gaps = 109/305 (35%)
Query: 1 MDTKSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKK--PYPAMYSSIFGGIILDPAM 58
+ S+E G + M S S+ +++Q+ + + S+ G
Sbjct: 323 ILEDSLENNEGVP--SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AKN 376
Query: 59 MVI---PIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVS----ARISSPFPRS 111
+V+ P LY L++ L + A S +RI PF
Sbjct: 377 LVVSGPPQS--------------------LYGLNLTLRK--AKAPSGLDQSRI--PF--- 409
Query: 112 TLRSILVQLTAASQCK-KGTLRFWL--TAGPGDF---LLSPAGCPTSAFYAVVIDDDFSQ 165
S+ K K + RF L + P F LL PA + +I+ D
Sbjct: 410 ------------SERKLKFSNRF-LPVAS-P--FHSHLLVPA--------SDLINKDLV- 444
Query: 166 CKEGVKVITSS--IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGP 223
K V IP ++ T + + S I +D + P
Sbjct: 445 -KNNVSFNAKDIQIP----VYDTFDGSD--------LRVLSGSISERI-VDC---IIRLP 487
Query: 224 NVN----VAF-ITHDKELVLPFFDKILSGCTAKRLLELAPKLVE-QG-RLKSVKTANLTV 276
V F TH +L F SG L L + + G R+ T ++
Sbjct: 488 -VKWETTTQFKATH----ILDFGPGGASG-----LGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 277 DEAKG 281
D+ G
Sbjct: 538 DDDYG 542
Score = 35.8 bits (82), Expect = 0.020
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 53/157 (33%)
Query: 1 MDTKSVEAENGSEFKAHMFSSSSELL---QKLQEKWSSVKKKPYPAMY---SSIFGGIIL 54
+ T+ + E ++ F S LL Q Q PA+ + F
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-----------PALTLMEKAAF----- 1744
Query: 55 DPAMM----VIPIDDHMVHRGH------------GVF---DTAIILN--GYLYELDVHLD 93
+ +IP D GH V ++ G ++ V D
Sbjct: 1745 --EDLKSKGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 94 RFLRS-----AVS-ARISSPFPRSTLRSILVQLTAAS 124
RS A++ R+++ F + L+ ++ ++ +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 52/272 (19%), Positives = 88/272 (32%), Gaps = 50/272 (18%)
Query: 69 HRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRS-----ILVQLTAA 123
H H F+T Y L V D F+ + + P+S L I++ A
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAV 61
Query: 124 SQCKKGTLR-FWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS--------QCKEGVKVIT 174
S TLR FW LLS F V+ ++ + ++ +
Sbjct: 62 SG----TLRLFWT-------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 175 SSIPMKPRLFATVK-----NVNYLPNVLAKMEA--EDKGASASIWIDEDGYVAEGPNVNV 227
I + RL+ + NV+ L L +A E + A + DG + G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---NVLIDGVLGSGKTWVA 167
Query: 228 AFITHDKELVLPFFDKI----LSGC-TAKRLLELAPKLVEQ------GRLKSVKTANLTV 276
+ ++ KI L C + + +LE+ KL+ Q R L +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 277 DEAKGAAEMMYVGSTLP--LLAI-TVWDEQPI 305
+ + LL + V + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Score = 40.6 bits (94), Expect = 6e-04
Identities = 52/344 (15%), Positives = 97/344 (28%), Gaps = 101/344 (29%)
Query: 24 ELLQK----LQEKWSSVKKKPYP--AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDT 77
E+L+ L + +++P MY + D + V R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLK- 139
Query: 78 AIILNGYLYELDVHLDRFL-------RSAVSARISSPFPRSTLRSILVQLTAASQCKKGT 130
L L EL + + ++ V+ S VQ CK
Sbjct: 140 ---LRQALLELRPAKNVLIDGVLGSGKTWVAL--------DVCLSYKVQ------CKMDF 182
Query: 131 LRFWLTAG----PGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFAT 186
FWL P L + + S+ + ++ L
Sbjct: 183 KIFWLNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 187 VKNVNYLPN---VLAKMEAEDKGASASIWIDEDGYVAEGPNVN--VAFITHDKELVLPFF 241
+K+ Y N VL + + + N++ + T K++
Sbjct: 238 LKSKPY-ENCLLVL-----LN------VQ---NAKAWNAFNLSCKILLTTRFKQVT---- 278
Query: 242 DKILSGCTAKRLLELAPKLVEQGRLKSV--KTANLTVDEAKGAAEMMYVGSTLPLLAITV 299
D + + T L+ + +KS+ K + + LP +T
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------------LPREVLTT 325
Query: 300 WDEQPIGDGNVGELTMALSDLLWE---DMVAGPETQRHCVSYDQ 340
P LS ++ E D +A + +H V+ D+
Sbjct: 326 ---NP----------RRLS-IIAESIRDGLATWDNWKH-VNCDK 354
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 34.8 bits (79), Expect = 0.034
Identities = 17/148 (11%), Positives = 36/148 (24%), Gaps = 21/148 (14%)
Query: 128 KGTLRFWL----------TAGPGDFLLSPAGCP--------TSAFYAVVIDDDFSQCKEG 169
KG+ + W GD+ P + V++ F
Sbjct: 79 KGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLFYY 138
Query: 170 VKVITSS---IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVN 226
+ + P P + + ++ +++ D A S D P
Sbjct: 139 LGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANT 198
Query: 227 VAFITHDKELVLPFFDKILSGCTAKRLL 254
V + ++ + L
Sbjct: 199 VWHTGANALASTAGDPYFIANGWGPKYL 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.38
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 25/51 (49%)
Query: 251 KRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAI--TV 299
K+ L+ KL Q LK +Y + P LAI T+
Sbjct: 19 KQALK---KL--QASLK------------------LYADDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 1.8
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 18/41 (43%)
Query: 167 KEGVKVITSSIPMKPRLFATVKNVNYLPN------VLAKME 201
K+ +K + +S+ +L+A + + A ME
Sbjct: 19 KQALKKLQASL----KLYA--------DDSAPALAIKATME 47
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein,
beta barrel, oxidoreductase; 2.80A {Methylococcus
capsulatus} PDB: 3rgb_A
Length = 382
Score = 30.4 bits (68), Expect = 0.81
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 265 RLKSVKTANLT-VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
RL TA++ +D Y L ++V D P+ G + + SD WE
Sbjct: 281 RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTASDAAWE 340
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 30.1 bits (67), Expect = 1.1
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 5/30 (16%)
Query: 126 CKKGTLRFWL-----TAGPGDFLLSPAGCP 150
G L L GD+ PAG P
Sbjct: 73 VLDGKLELTLDGERYLLISGDYANIPAGTP 102
Score = 29.4 bits (65), Expect = 1.9
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 128 KGTLRFWL-----TAGPGDFLLSPAGCPTS 152
+G + W PGDFL PA S
Sbjct: 247 EGQMTMWTDGQEIQLNPGDFLHVPANTVHS 276
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 28.3 bits (64), Expect = 3.4
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 220 AEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTA 272
P + + ++TH E + F KIL LL+ + ++QG ++ + T+
Sbjct: 209 DSYPTLAMIYVTHFIEEITANFSKIL-------LLK-DGQSIQQGAVEDILTS 253
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1582, PSI, protein STRU initiative; 2.05A {Enterococcus
faecalis} SCOP: b.82.1.11
Length = 274
Score = 28.5 bits (63), Expect = 3.4
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 164
W GD++ A P A YAV ++
Sbjct: 222 WYPVEKGDYIFMSAYVP-QAAYAVGREEPLM 251
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding,
endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana}
PDB: 4e2s_A
Length = 266
Score = 28.0 bits (62), Expect = 4.4
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAV 157
W GD + P + A+
Sbjct: 226 WYPVQAGDVIWMAPFVP-QWYAAL 248
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 27.3 bits (60), Expect = 4.6
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 295 LAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPE 330
L + VW++ I D VG + + L + + E
Sbjct: 63 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 98
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone
NAME 3174C1TCT3B1, T T1521, PSI, protein initiative;
2.60A {Escherichia coli} SCOP: b.82.1.11
Length = 261
Score = 27.7 bits (61), Expect = 4.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAVVIDDDFS 164
W+ GD++ A A Y V + FS
Sbjct: 219 WIPVKKGDYIFMGAYSL-QAGYGVGRGEAFS 248
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2,
protein structure initiative; 2.00A {Agrobacterium
tumefaciens str} SCOP: d.144.1.6
Length = 322
Score = 27.6 bits (60), Expect = 6.2
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 12 SEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRG 71
E + + + L W + + ID +
Sbjct: 160 DEVEKGLREEIRPEIDYLAAHWPKDLPA-GVIHADLFQDNVFFLGDELSGLIDFYFACND 218
Query: 72 HGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRS--TLRSILVQLTAASQCKKG 129
+D +I LN + +E D + A+ S P S L ++ + ++
Sbjct: 219 LLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLSRGSA----- 273
Query: 130 TLRFWLTAGPGDFLLSPAG 148
LRF+LT D+L +PAG
Sbjct: 274 -LRFFLTR-LYDWLTTPAG 290
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1583, PSI, protein STRU initiative; 2.46A {Deinococcus
radiodurans} SCOP: b.82.1.11
Length = 246
Score = 27.3 bits (60), Expect = 7.3
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAV 157
+ GD + A CP + A+
Sbjct: 205 YYPVTAGDIIWMGAHCP-QWYGAL 227
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 25.9 bits (57), Expect = 7.9
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 128 KGTLRFWL-----TAGPGDFLLSPAGCP 150
+G + + PG +PAG P
Sbjct: 57 EGEVVVRVGEEEALLAPGMAAFAPAGAP 84
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 27.0 bits (59), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAV 157
W+ GDF+ A CP A Y+
Sbjct: 231 WVEVEAGDFMWLRAFCP-QACYSG 253
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 27.1 bits (61), Expect = 9.1
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 226 NVAFITHDKELVLPFFDKIL-----SGCTAK---RLLELAPK 259
+ D+E+ + FD ++ +G + RL P
Sbjct: 339 AEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRLNREKPG 380
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 26.2 bits (58), Expect = 9.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 294 LLAITVWDEQPIGDGNVGELTMALSDL 320
+L IT+ D + D +G T +S +
Sbjct: 71 VLEITLMDANYVMDETLGTATFTVSSM 97
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_A
Length = 419
Score = 27.0 bits (59), Expect = 9.8
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 265 RLKSVKTANLT-VDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
RL A L ++ + + L ++ ++ I G E+ + + D W+
Sbjct: 315 RLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS--NDDVIAPGESKEIVVKIQDARWD 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,208,353
Number of extensions: 319091
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 44
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)