RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019507
(340 letters)
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 120 bits (300), Expect = 2e-32
Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 7/278 (2%)
Query: 47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 106
+++ I+ + I +D G GV++ + NG ++ ++ H+DR SA RI+
Sbjct: 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 107 PFPRSTLRSILVQLTAASQCKKGTLRFWL-TAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ 165
P+ + +L +L ++ G + F + P ++
Sbjct: 63 PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122
Query: 166 CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNV 225
V + + L +K++N L VLAK EA +KG +I + V EG +
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHR-NNTVTEGSSS 181
Query: 226 NVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEM 285
NV I P + IL G T ++ A ++ + T EA E+
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEI-----PFTTHEALKMDEL 236
Query: 286 MYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
+T + + D + I DG VGE T L
Sbjct: 237 FVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFET 274
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 114 bits (286), Expect = 3e-30
Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 16/286 (5%)
Query: 49 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG----YLYELDVHLDRFLRSAVSARI 104
F G ++ + + H +H G VF+ + ++ H+ R SA R
Sbjct: 7 FNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRF 66
Query: 105 SSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDD--- 161
L + + +R + G ++P ++
Sbjct: 67 PVSQSIDELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAY 126
Query: 162 -DFSQCKEGVKVITSSIPMKPR---LFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDG 217
++G+ + SS A NYL ++L EA G I +D +G
Sbjct: 127 LGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDVNG 186
Query: 218 YVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVD 277
Y++EG N+ + PF L G T +++LA +L + R L+ +
Sbjct: 187 YISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVR-----EQVLSRE 241
Query: 278 EAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
A E+ G+ + + D +G+G G +T + +
Sbjct: 242 SLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFFG 287
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 86.3 bits (212), Expect = 4e-20
Identities = 41/261 (15%), Positives = 93/261 (35%), Gaps = 12/261 (4%)
Query: 61 IPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQL 120
+ + D G G F TA +++G + L H+ R + + +
Sbjct: 12 LAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQD---ACQRLMISCDFWPQLEQEMK 68
Query: 121 TAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVV----IDDDFSQCKEGVKVITSS 176
T A++ + G L+ ++ G G S + V D + + ++
Sbjct: 69 TLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPV 128
Query: 177 IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKEL 236
+ A +K++N L VL + E A ++ +D +G+V E N+ + +
Sbjct: 129 RLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVVY 188
Query: 237 VLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLA 296
++G + + L + + +++E+ A EM+ + +P++
Sbjct: 189 TPRLDQAGVNGIMRQFCIRLLAQSS-----YQLVEVQASLEESLQADEMVICNALMPVMP 243
Query: 297 ITVWDEQPIGDGNVGELTMAL 317
+ + + E L
Sbjct: 244 VCACGDVSFSSATLYEYLAPL 264
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 46.4 bits (109), Expect = 2e-06
Identities = 44/307 (14%), Positives = 77/307 (25%), Gaps = 36/307 (11%)
Query: 49 FGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNG-----YLYELDVHLDRFLRSAVSAR 103
I + + +H +F+ G L+ +++DR LRSA+
Sbjct: 47 GQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLC 106
Query: 104 ISSPFPRSTLRSILVQLTAASQCKKGTLRFWL------TAGPGDFLLSPAGCPTSAFYAV 157
+ S L I + L +S
Sbjct: 107 LPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILC 166
Query: 158 V---IDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKM-EAEDKGASASIWI 213
S + + I K + EA +G +W+
Sbjct: 167 PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWL 226
Query: 214 DEDGYVAEGPNVNVAFITHDKE------LVLPFFDKILSGCTAKRLLELAPKLVEQGRLK 267
+ F+ E + P IL G + LL++A E
Sbjct: 227 YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEF---- 282
Query: 268 SVKTANLTVDEAKGAA------EMMYVGSTLPLLAIT----VWDEQPIGDGNVG-ELTMA 316
V +T+ + A E+ G+ + + I G EL +
Sbjct: 283 RVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILR 342
Query: 317 LSDLLWE 323
L E
Sbjct: 343 FQKELKE 349
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 31.2 bits (70), Expect = 0.18
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 149 CPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS 208
C Y V+ D + + L+ +V PN +E K
Sbjct: 263 CVGRIRYLGVLLYDADAIERAAST-----ENEKDLYQRQLDVFLDPNDPKVIEQAIKDGI 317
Query: 209 ASIWIDEDGYVAEGPNVN-------VAFITHDKELVLPFF 241
I+ A+ V +A H + LP
Sbjct: 318 PLSVIE----AAQQSPVYKMAMEWKLALPLHPEYRTLPMV 353
>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.3 bits (65), Expect = 0.47
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 229 FITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMM-- 286
D LV+ D + SG + + L+ L + GR ++V+ A L VD +G E+
Sbjct: 96 AGGIDDALVILVDDVLYSGRSVRSALD---ALRDVGRPRAVQLAVL-VD--RGHRELPLR 149
Query: 287 --YVGSTLPL 294
YVG +P
Sbjct: 150 ADYVGKNVPT 159
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 28.0 bits (61), Expect = 1.8
Identities = 12/118 (10%), Positives = 32/118 (27%), Gaps = 1/118 (0%)
Query: 212 WIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKT 271
+D+D + V V + + + +S +L + + ++
Sbjct: 9 QLDDDLCLLGDVQVPVFLLRLGEASWA-LVEGGISRDAELVWADLCRWVADPSQVHYWLI 67
Query: 272 ANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGP 329
+ D + + +LA + + V + LL +
Sbjct: 68 THKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPE 125
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 18/101 (17%)
Query: 126 CKKGTLRFWL----------TAGPGDFLLSPAGCP--------TSAFYAVVIDDDFSQCK 167
C KG+ + W GD+ P + V++ F
Sbjct: 75 CNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLF 134
Query: 168 EGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGAS 208
+ + P + ++ + + + +
Sbjct: 135 YYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDV 175
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli
[TaxId: 562]}
Length = 253
Score = 26.7 bits (58), Expect = 4.1
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAV 157
W+ GD++ A A Y V
Sbjct: 211 WIPVKKGDYIFMGAYSL-QAGYGV 233
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 26.4 bits (57), Expect = 4.7
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 126 CKKGTLRFWL-----TAGPGDFLLSPAGCP 150
C +G + W PGDFL PA
Sbjct: 241 CLEGQMTMWTDGQEIQLNPGDFLHVPANTV 270
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 273
Score = 25.8 bits (56), Expect = 7.1
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 134 WLTAGPGDFLLSPAGCPTSAFYAV 157
W+ GDF+ A CP A Y+
Sbjct: 229 WVEVEAGDFMWLRAFCP-QACYSG 251
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 24.9 bits (54), Expect = 8.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 86 YELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQ 125
+ D ++ L S ++ +S P R L++IL + AA Q
Sbjct: 89 FADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAYQ 128
>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase
EF0837 {Enterococcus faecalis [TaxId: 1351]}
Length = 101
Score = 24.3 bits (53), Expect = 9.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 250 AKRLLELAPKLVEQGRLKSVKTANLTV 276
AK + L P L+ K A+LT+
Sbjct: 37 AKETIHLEPGTYVSATLEIGKDADLTI 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,251,284
Number of extensions: 57902
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 17
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)