Query 019509
Match_columns 340
No_of_seqs 177 out of 560
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 3.8E-83 8.3E-88 606.6 22.2 301 26-326 5-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 5.8E-77 1.3E-81 571.0 32.7 308 24-331 17-327 (328)
3 COG0189 RimK Glutathione synth 100.0 1.8E-29 3.9E-34 242.6 22.1 219 72-328 77-315 (318)
4 PRK10446 ribosomal protein S6 100.0 1.1E-28 2.4E-33 235.5 25.1 253 43-332 13-294 (300)
5 TIGR02144 LysX_arch Lysine bio 100.0 1.1E-27 2.4E-32 225.3 25.9 245 44-328 11-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 100.0 2.2E-26 4.7E-31 215.2 24.5 234 44-315 12-263 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 1.2E-26 2.7E-31 207.7 14.8 168 113-316 2-177 (190)
8 TIGR01380 glut_syn glutathione 99.9 6.9E-24 1.5E-28 203.9 21.8 249 30-326 2-310 (312)
9 KOG1057 Arp2/3 complex-interac 99.9 2.4E-24 5.3E-29 218.3 17.0 266 24-325 36-340 (1018)
10 PRK01372 ddl D-alanine--D-alan 99.9 2E-22 4.2E-27 192.1 26.3 238 44-314 24-276 (304)
11 PRK05246 glutathione synthetas 99.9 5.3E-23 1.2E-27 198.0 22.4 252 30-329 3-314 (316)
12 PRK12458 glutathione synthetas 99.9 7.1E-23 1.5E-27 198.9 23.0 246 41-330 9-327 (338)
13 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.5E-21 3.3E-26 186.7 26.1 241 44-314 19-291 (315)
14 TIGR03103 trio_acet_GNAT GNAT- 99.9 2.1E-21 4.6E-26 199.4 23.6 244 46-324 245-540 (547)
15 PRK14571 D-alanyl-alanine synt 99.9 1.6E-20 3.5E-25 179.0 25.1 231 47-316 23-273 (299)
16 PRK02471 bifunctional glutamat 99.9 1.3E-19 2.8E-24 191.7 25.6 236 42-311 431-729 (752)
17 PRK14016 cyanophycin synthetas 99.8 4.9E-20 1.1E-24 195.0 20.1 233 47-313 164-452 (727)
18 PRK01966 ddl D-alanyl-alanine 99.8 1.8E-19 3.9E-24 174.7 22.1 214 73-315 81-308 (333)
19 PRK14569 D-alanyl-alanine synt 99.8 2E-19 4.4E-24 171.6 21.8 233 47-316 26-273 (296)
20 PRK14570 D-alanyl-alanine synt 99.8 9.6E-20 2.1E-24 178.6 19.9 217 73-316 87-324 (364)
21 PRK14572 D-alanyl-alanine synt 99.8 1.2E-18 2.7E-23 169.7 23.5 215 73-316 88-323 (347)
22 PRK14568 vanB D-alanine--D-lac 99.8 8.7E-19 1.9E-23 170.5 22.2 212 73-316 90-318 (343)
23 TIGR02068 cya_phycin_syn cyano 99.8 1.9E-19 4.2E-24 193.7 16.6 234 44-313 160-451 (864)
24 TIGR01435 glu_cys_lig_rel glut 99.8 1.1E-17 2.4E-22 175.3 24.0 238 41-311 418-715 (737)
25 PF07478 Dala_Dala_lig_C: D-al 99.8 3.7E-19 7.9E-24 161.2 9.5 163 132-317 5-184 (203)
26 TIGR02291 rimK_rel_E_lig alpha 99.8 1E-17 2.2E-22 160.6 19.0 193 103-311 26-273 (317)
27 PRK14573 bifunctional D-alanyl 99.7 5.7E-16 1.2E-20 166.3 24.0 246 47-316 474-764 (809)
28 TIGR01161 purK phosphoribosyla 99.7 2.4E-15 5.3E-20 146.6 23.4 227 47-312 13-269 (352)
29 TIGR01142 purT phosphoribosylg 99.7 1.3E-15 2.8E-20 149.5 21.5 228 47-315 13-279 (380)
30 COG1181 DdlA D-alanine-D-alani 99.7 4.8E-15 1E-19 142.7 22.8 250 44-317 22-295 (317)
31 PRK06019 phosphoribosylaminoim 99.7 5.8E-15 1.2E-19 145.2 21.2 226 47-312 16-271 (372)
32 PF13535 ATP-grasp_4: ATP-gras 99.7 1.4E-15 3.1E-20 133.2 13.2 163 111-309 1-180 (184)
33 PRK12767 carbamoyl phosphate s 99.6 2.1E-14 4.7E-19 137.8 20.7 166 101-309 98-271 (326)
34 PRK07206 hypothetical protein; 99.6 2.2E-14 4.8E-19 142.5 21.4 228 47-314 16-294 (416)
35 PLN02948 phosphoribosylaminoim 99.6 8.8E-14 1.9E-18 144.0 23.8 243 26-312 20-294 (577)
36 PRK05294 carB carbamoyl phosph 99.6 2.8E-14 6.1E-19 157.1 21.2 230 42-309 574-842 (1066)
37 PRK06849 hypothetical protein; 99.6 9.2E-14 2E-18 137.2 22.7 167 101-309 103-277 (389)
38 PRK09288 purT phosphoribosylgl 99.6 6.4E-14 1.4E-18 138.2 20.7 230 46-315 25-292 (395)
39 TIGR01369 CPSaseII_lrg carbamo 99.6 1.6E-13 3.4E-18 151.0 24.5 229 43-309 575-842 (1050)
40 PRK08462 biotin carboxylase; V 99.6 9.5E-14 2.1E-18 139.5 19.1 227 45-311 16-298 (445)
41 PRK12833 acetyl-CoA carboxylas 99.6 2.8E-13 6.1E-18 137.2 21.2 178 98-311 101-299 (467)
42 PRK05586 biotin carboxylase; V 99.6 1.2E-13 2.7E-18 138.9 18.3 179 98-311 98-296 (447)
43 PRK02186 argininosuccinate lya 99.6 3.1E-13 6.7E-18 146.5 22.4 222 47-310 18-279 (887)
44 PRK13790 phosphoribosylamine-- 99.5 5.2E-13 1.1E-17 131.8 19.4 213 45-310 16-252 (379)
45 TIGR00514 accC acetyl-CoA carb 99.5 8.3E-13 1.8E-17 133.0 20.7 229 46-311 15-296 (449)
46 PRK08654 pyruvate carboxylase 99.5 1.1E-12 2.3E-17 133.9 21.6 176 98-311 98-295 (499)
47 PLN02735 carbamoyl-phosphate s 99.5 8E-13 1.7E-17 145.6 22.1 232 43-309 44-322 (1102)
48 PRK08463 acetyl-CoA carboxylas 99.5 1.6E-12 3.5E-17 132.0 22.0 227 46-311 15-296 (478)
49 PRK07178 pyruvate carboxylase 99.5 1.3E-12 2.8E-17 132.5 20.6 229 46-311 15-295 (472)
50 PRK08591 acetyl-CoA carboxylas 99.5 2.2E-12 4.8E-17 129.8 21.1 229 46-311 15-296 (451)
51 PLN02735 carbamoyl-phosphate s 99.5 2.2E-12 4.8E-17 142.1 22.5 227 47-309 599-877 (1102)
52 PRK12815 carB carbamoyl phosph 99.5 2.2E-12 4.7E-17 142.2 22.4 228 43-309 576-840 (1068)
53 PRK05294 carB carbamoyl phosph 99.5 2.6E-12 5.6E-17 141.8 20.7 229 46-309 31-305 (1066)
54 TIGR01369 CPSaseII_lrg carbamo 99.5 2.7E-12 5.9E-17 141.3 20.1 233 43-309 27-303 (1050)
55 PRK00885 phosphoribosylamine-- 99.5 4.8E-12 1E-16 126.3 19.8 102 98-214 85-200 (420)
56 TIGR01235 pyruv_carbox pyruvat 99.5 4.5E-12 9.7E-17 139.5 21.2 226 47-311 13-296 (1143)
57 PRK12815 carB carbamoyl phosph 99.4 9.8E-12 2.1E-16 137.1 21.6 234 44-314 29-307 (1068)
58 PRK06524 biotin carboxylase-li 99.4 6.4E-12 1.4E-16 126.5 17.8 191 90-310 118-325 (493)
59 PRK06111 acetyl-CoA carboxylas 99.4 2.5E-11 5.4E-16 122.0 21.7 179 98-310 98-295 (450)
60 PLN02257 phosphoribosylamine-- 99.4 5.2E-11 1.1E-15 119.6 22.0 237 45-331 51-317 (434)
61 PF02655 ATP-grasp_3: ATP-gras 99.4 1.8E-12 3.8E-17 113.2 9.3 151 112-308 1-158 (161)
62 PRK12999 pyruvate carboxylase; 99.4 2.5E-11 5.3E-16 134.1 19.3 227 46-311 18-300 (1146)
63 PRK13789 phosphoribosylamine-- 99.3 5.1E-11 1.1E-15 119.4 18.8 237 44-330 56-321 (426)
64 TIGR00877 purD phosphoribosyla 99.3 9.4E-11 2E-15 116.9 19.3 179 98-311 87-293 (423)
65 PF15632 ATPgrasp_Ter: ATP-gra 99.3 1.1E-10 2.4E-15 112.8 18.2 186 74-309 67-282 (329)
66 TIGR02712 urea_carbox urea car 99.3 5.4E-10 1.2E-14 124.2 23.6 177 98-311 97-295 (1201)
67 COG0458 CarB Carbamoylphosphat 99.3 7.2E-10 1.6E-14 108.3 20.9 226 49-309 22-291 (400)
68 PRK06395 phosphoribosylamine-- 99.3 7.4E-10 1.6E-14 111.4 21.0 217 44-309 53-294 (435)
69 COG0439 AccC Biotin carboxylas 99.2 3.6E-10 7.8E-15 113.2 13.5 177 98-310 98-295 (449)
70 PF02750 Synapsin_C: Synapsin, 99.1 9.8E-10 2.1E-14 97.5 13.3 190 104-328 1-201 (203)
71 COG0027 PurT Formate-dependent 99.0 1.7E-08 3.7E-13 95.4 17.2 226 47-315 26-292 (394)
72 PF02786 CPSase_L_D2: Carbamoy 99.0 9.8E-10 2.1E-14 100.2 8.4 161 114-309 1-181 (211)
73 PRK05784 phosphoribosylamine-- 99.0 8E-08 1.7E-12 97.9 21.6 134 45-213 58-216 (486)
74 PF02955 GSH-S_ATP: Prokaryoti 99.0 3.1E-09 6.8E-14 93.9 9.9 137 135-307 11-161 (173)
75 COG1821 Predicted ATP-utilizin 99.0 2.8E-09 6.1E-14 98.0 9.6 175 73-309 73-257 (307)
76 PF14398 ATPgrasp_YheCD: YheC/ 98.9 4.1E-08 8.9E-13 92.4 16.7 190 95-316 4-241 (262)
77 COG0026 PurK Phosphoribosylami 98.8 4.5E-07 9.8E-12 88.0 18.8 224 48-308 16-267 (375)
78 PRK13278 purP 5-formaminoimida 98.7 1.1E-06 2.5E-11 86.1 20.0 176 98-308 107-312 (358)
79 KOG3895 Synaptic vesicle prote 98.7 1.1E-07 2.4E-12 90.8 12.4 220 73-329 155-391 (488)
80 PF02222 ATP-grasp: ATP-grasp 98.7 5.4E-08 1.2E-12 86.1 9.2 150 132-309 4-162 (172)
81 COG2232 Predicted ATP-dependen 98.7 8.1E-07 1.8E-11 84.7 16.9 219 44-308 20-274 (389)
82 PRK13277 5-formaminoimidazole- 98.7 2.9E-07 6.4E-12 89.7 14.3 161 113-306 125-317 (366)
83 PF14397 ATPgrasp_ST: Sugar-tr 98.7 1.9E-06 4.2E-11 82.1 18.3 196 104-313 16-265 (285)
84 COG3919 Predicted ATP-grasp en 98.5 2.4E-07 5.1E-12 87.2 8.3 172 100-309 101-289 (415)
85 KOG0238 3-Methylcrotonyl-CoA c 98.5 5.7E-06 1.2E-10 82.7 17.9 176 96-309 92-290 (670)
86 PF03133 TTL: Tubulin-tyrosine 98.4 3.7E-06 8E-11 80.0 13.4 74 135-212 42-125 (292)
87 PF01071 GARS_A: Phosphoribosy 98.2 8.1E-06 1.8E-10 73.4 10.0 89 114-217 2-106 (194)
88 COG0151 PurD Phosphoribosylami 98.2 6.2E-05 1.3E-09 74.4 16.7 139 45-217 52-206 (428)
89 COG4770 Acetyl/propionyl-CoA c 98.2 5.6E-05 1.2E-09 76.8 16.6 175 98-309 98-294 (645)
90 COG1038 PycA Pyruvate carboxyl 98.1 6.4E-05 1.4E-09 78.9 14.2 173 98-307 104-298 (1149)
91 KOG0369 Pyruvate carboxylase [ 97.6 0.00038 8.3E-09 71.9 10.6 176 97-308 129-325 (1176)
92 KOG0370 Multifunctional pyrimi 97.3 0.001 2.2E-08 71.1 9.3 259 24-330 924-1230(1435)
93 PF14305 ATPgrasp_TupA: TupA-l 97.2 0.043 9.3E-07 51.1 18.0 182 104-314 10-224 (239)
94 TIGR01016 sucCoAbeta succinyl- 97.1 0.0011 2.4E-08 65.7 6.7 88 117-215 7-116 (386)
95 PRK00696 sucC succinyl-CoA syn 96.9 0.0024 5.3E-08 63.4 7.2 90 115-215 5-116 (388)
96 PF14403 CP_ATPgrasp_2: Circul 96.4 0.012 2.6E-07 59.5 8.5 151 42-203 199-386 (445)
97 KOG2156 Tubulin-tyrosine ligas 96.4 0.0092 2E-07 60.4 7.1 73 135-212 282-360 (662)
98 PF14243 DUF4343: Domain of un 96.0 0.26 5.7E-06 41.5 13.3 109 161-309 3-117 (130)
99 KOG2157 Predicted tubulin-tyro 95.9 0.039 8.6E-07 56.4 9.3 56 157-215 197-270 (497)
100 KOG0368 Acetyl-CoA carboxylase 95.3 0.14 3E-06 57.8 11.0 187 99-306 162-375 (2196)
101 PF13549 ATP-grasp_5: ATP-gras 95.0 0.022 4.7E-07 52.5 3.5 92 114-215 11-121 (222)
102 KOG0237 Glycinamide ribonucleo 93.0 3.6 7.8E-05 43.0 15.0 138 45-215 57-208 (788)
103 PHA02117 glutathionylspermidin 92.0 4.7 0.0001 40.4 14.2 178 29-223 177-379 (397)
104 PF08442 ATP-grasp_2: ATP-gras 91.5 0.75 1.6E-05 41.8 7.4 78 132-212 14-113 (202)
105 PF07065 D123: D123; InterPro 89.7 2.7 5.9E-05 40.5 9.8 92 193-313 151-244 (299)
106 PF02951 GSH-S_N: Prokaryotic 89.6 1.2 2.5E-05 37.1 6.3 80 30-110 2-119 (119)
107 PRK14046 malate--CoA ligase su 89.0 1.4 3E-05 44.0 7.6 80 132-215 15-116 (392)
108 PRK10507 bifunctional glutathi 88.3 7.3 0.00016 41.3 12.5 107 98-223 482-600 (619)
109 COG0045 SucC Succinyl-CoA synt 84.2 3 6.5E-05 41.4 6.7 75 132-209 15-108 (387)
110 COG1759 5-formaminoimidazole-4 80.9 2.2 4.8E-05 41.3 4.3 66 114-201 124-203 (361)
111 KOG2158 Tubulin-tyrosine ligas 74.8 1.5 3.3E-05 44.3 1.3 76 134-215 203-285 (565)
112 PLN02235 ATP citrate (pro-S)-l 69.2 16 0.00034 37.0 7.1 72 132-203 23-114 (423)
113 PLN00124 succinyl-CoA ligase [ 66.7 5.3 0.00012 40.3 3.3 43 117-169 34-79 (422)
114 COG0754 Gsp Glutathionylspermi 65.9 3.5 7.5E-05 40.5 1.7 168 28-217 170-357 (387)
115 KOG0370 Multifunctional pyrimi 65.6 1.9 4.2E-05 47.2 -0.2 229 44-308 399-671 (1435)
116 PF02729 OTCace_N: Aspartate/o 64.2 29 0.00062 29.6 6.9 73 26-105 37-122 (142)
117 PRK12562 ornithine carbamoyltr 47.3 79 0.0017 31.0 7.6 72 27-105 44-128 (334)
118 PRK03515 ornithine carbamoyltr 44.1 72 0.0016 31.3 6.8 71 27-104 44-127 (336)
119 PRK04284 ornithine carbamoyltr 42.7 79 0.0017 30.9 6.9 71 27-104 44-127 (332)
120 TIGR02049 gshA_ferroox glutama 42.7 75 0.0016 31.7 6.5 55 162-219 260-336 (403)
121 PF02310 B12-binding: B12 bind 42.4 1E+02 0.0022 24.5 6.5 35 32-66 4-38 (121)
122 PRK14805 ornithine carbamoyltr 42.3 84 0.0018 30.3 6.9 74 27-107 37-123 (302)
123 TIGR00658 orni_carb_tr ornithi 41.2 1E+02 0.0022 29.7 7.3 71 27-104 38-121 (304)
124 PRK02102 ornithine carbamoyltr 41.1 75 0.0016 31.1 6.4 72 27-105 45-129 (331)
125 TIGR00670 asp_carb_tr aspartat 40.9 92 0.002 30.0 6.9 73 28-107 39-125 (301)
126 PF04174 CP_ATPgrasp_1: A circ 40.7 28 0.00061 34.1 3.4 27 281-309 67-93 (330)
127 PF08886 GshA: Glutamate-cyste 40.5 84 0.0018 31.4 6.6 57 162-221 263-342 (404)
128 PRK00779 ornithine carbamoyltr 40.3 1E+02 0.0022 29.7 7.1 72 27-105 42-126 (304)
129 KOG2983 Uncharacterized conser 38.7 1.3E+02 0.0028 28.8 7.1 81 202-311 174-255 (334)
130 PF08532 Glyco_hydro_42M: Beta 38.3 48 0.001 29.7 4.3 66 47-116 34-102 (207)
131 PRK01713 ornithine carbamoyltr 35.5 1.1E+02 0.0023 30.0 6.5 72 27-105 45-129 (334)
132 COG0540 PyrB Aspartate carbamo 34.5 1.5E+02 0.0032 28.9 7.0 70 28-104 47-130 (316)
133 cd06270 PBP1_GalS_like Ligand 34.3 1.4E+02 0.003 26.8 6.9 36 30-65 1-38 (268)
134 PF12058 DUF3539: Protein of u 33.9 27 0.00059 27.4 1.6 19 197-215 3-23 (88)
135 PRK02255 putrescine carbamoylt 31.0 1.8E+02 0.004 28.5 7.3 72 27-105 41-125 (338)
136 cd05565 PTS_IIB_lactose PTS_II 30.9 2.6E+02 0.0055 22.3 6.9 74 42-115 14-90 (99)
137 cd06282 PBP1_GntR_like_2 Ligan 30.3 1.5E+02 0.0033 26.3 6.3 36 30-65 1-38 (266)
138 cd06299 PBP1_LacI_like_13 Liga 29.9 1.7E+02 0.0037 26.1 6.6 36 30-65 1-38 (265)
139 COG1181 DdlA D-alanine-D-alani 29.4 5.9 0.00013 38.5 -3.3 107 98-219 35-155 (317)
140 PLN02342 ornithine carbamoyltr 28.8 1.7E+02 0.0036 28.9 6.6 72 27-105 84-168 (348)
141 TIGR00853 pts-lac PTS system, 28.5 85 0.0018 24.7 3.8 64 43-106 18-84 (95)
142 PRK00856 pyrB aspartate carbam 28.2 2.2E+02 0.0048 27.4 7.2 74 27-107 44-131 (305)
143 COG0078 ArgF Ornithine carbamo 28.1 2E+02 0.0044 27.9 6.8 73 27-106 43-128 (310)
144 cd06267 PBP1_LacI_sugar_bindin 27.4 1.4E+02 0.0029 26.3 5.4 37 30-66 1-39 (264)
145 cd03143 A4_beta-galactosidase_ 27.4 2E+02 0.0044 24.0 6.2 55 47-105 30-87 (154)
146 cd03770 SR_TndX_transposase Se 26.8 3.5E+02 0.0076 22.4 7.5 33 30-62 1-41 (140)
147 PLN02527 aspartate carbamoyltr 26.2 2.1E+02 0.0045 27.6 6.7 73 27-106 38-125 (306)
148 PF13380 CoA_binding_2: CoA bi 26.1 3.5E+02 0.0076 21.8 7.6 75 31-106 3-88 (116)
149 cd06289 PBP1_MalI_like Ligand- 25.4 1.8E+02 0.0039 25.8 5.9 35 30-64 1-37 (268)
150 COG4635 HemG Flavodoxin [Energ 25.3 1.2E+02 0.0027 26.7 4.4 51 47-97 20-73 (175)
151 PF04556 DpnII: DpnII restrict 25.0 1E+02 0.0022 29.6 4.2 34 274-309 179-218 (286)
152 PRK10355 xylF D-xylose transpo 23.7 3.1E+02 0.0066 26.2 7.4 83 23-105 20-114 (330)
153 cd01545 PBP1_SalR Ligand-bindi 23.6 2.9E+02 0.0063 24.5 6.9 36 30-65 1-38 (270)
154 COG2308 Uncharacterized conser 23.3 3.5E+02 0.0075 27.8 7.7 148 51-212 241-437 (488)
155 PRK07200 aspartate/ornithine c 23.1 2.9E+02 0.0063 27.7 7.3 51 29-82 61-123 (395)
156 cd06296 PBP1_CatR_like Ligand- 22.9 2.5E+02 0.0055 25.0 6.4 37 30-66 1-39 (270)
157 cd06283 PBP1_RegR_EndR_KdgR_li 22.7 2.5E+02 0.0054 24.9 6.3 36 30-65 1-38 (267)
158 PRK08192 aspartate carbamoyltr 22.5 2.6E+02 0.0057 27.4 6.7 74 27-107 43-130 (338)
159 cd06273 PBP1_GntR_like_1 This 22.4 2.6E+02 0.0057 24.8 6.4 37 30-66 1-39 (268)
160 PRK11891 aspartate carbamoyltr 22.0 3.2E+02 0.0069 27.8 7.3 73 27-106 125-211 (429)
161 cd06281 PBP1_LacI_like_5 Ligan 21.8 2.8E+02 0.006 24.9 6.4 76 30-105 1-87 (269)
162 cd05564 PTS_IIB_chitobiose_lic 21.1 1.5E+02 0.0032 23.2 3.9 64 43-106 14-80 (96)
163 PF11039 DUF2824: Protein of u 20.8 2.5E+02 0.0055 23.9 5.2 44 281-331 46-91 (151)
164 TIGR02690 resist_ArsH arsenica 20.7 1.9E+02 0.0041 26.6 5.0 56 9-65 7-66 (219)
165 PRK14804 ornithine carbamoyltr 20.2 3.5E+02 0.0076 26.1 7.0 73 27-106 42-126 (311)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=3.8e-83 Score=606.57 Aligned_cols=301 Identities=53% Similarity=0.955 Sum_probs=248.3
Q ss_pred CCcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecCh
Q 019509 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp 105 (340)
+++++|||||+|||+++|.|++|+.+|+++||++++||+++||++|||||+||||+|+..|.+.+++|.++||+++||||
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp 84 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP 84 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChh
Q 019509 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (340)
Q Consensus 106 ~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~ 185 (340)
+++|+.++||..|++.|.++....+...|.+|+++++..+.+++.+.+.+++|+||+||||++||||+.||.|+||++++
T Consensus 85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~ 164 (307)
T PF05770_consen 85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE 164 (307)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG
T ss_pred HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH
Confidence 99999999999999999987666666789999999997666677788888999999999999999999999999999999
Q ss_pred hhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCC--CCCCCC
Q 019509 186 SLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--PGIAEL 263 (340)
Q Consensus 186 ~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 263 (340)
+|+++++|||+||||||+|++|||||||++++++.|+|+||++.++.....+.|+|+++|+.++.+..+.++ +...++
T Consensus 165 gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~ 244 (307)
T PF05770_consen 165 GLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEM 244 (307)
T ss_dssp GGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS
T ss_pred HHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccC
Confidence 999999999999999999999999999999999999999999877665567889999999988776665555 455678
Q ss_pred CChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCccccHHHHHHHHHH
Q 019509 264 PPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLS 326 (340)
Q Consensus 264 p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~l~~ 326 (340)
|+.+.++++|..++++|||+|||||+|++++|+++||||||||||||+|+|+|+..|+++|++
T Consensus 245 p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 245 PPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp --HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 888999999999999999999999999999986689999999999999999999999999874
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=5.8e-77 Score=570.96 Aligned_cols=308 Identities=71% Similarity=1.126 Sum_probs=278.2
Q ss_pred CCCCcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 24 LQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 24 ~~~~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
...++++|||||++||.++|.|+.|+++|+++||++++||+++|+.+|+|||+||||++++.|.+.+++|..+|||++||
T Consensus 17 ~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi 96 (328)
T PLN02941 17 SQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL 96 (328)
T ss_pred ccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
||+++|++|+||..|+++|.++.++.+..+|++|+|+++.+...++.......+++||+|+||+.||||++||+|+++++
T Consensus 97 dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~ 176 (328)
T PLN02941 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYD 176 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecC
Confidence 99999999999999999999987777777899999999974333233334568999999999999999999999999999
Q ss_pred hhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCC---CCCCC
Q 019509 184 RFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD---LDPGI 260 (340)
Q Consensus 184 ~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 260 (340)
+++|..++.|+++||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+.+++....+..+. .++..
T Consensus 177 ~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~ 256 (328)
T PLN02941 177 QEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEV 256 (328)
T ss_pred HHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999997543333457889999988876655554 45555
Q ss_pred CCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCccccHHHHHHHHHHHHHhh
Q 019509 261 AELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQSK 331 (340)
Q Consensus 261 ~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~l~~~i~~~ 331 (340)
.++|+++++++||.+++++||++|||||+|++.+++++|+||||||||||+|+|+|+..|+|+|+++++++
T Consensus 257 ~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~ 327 (328)
T PLN02941 257 AELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKK 327 (328)
T ss_pred ccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcC
Confidence 67788888999999999999999999999998766668999999999999999999999999999998875
No 3
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-29 Score=242.60 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=159.5
Q ss_pred CCccEEEEccCchhhHHHHHHHH--HhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCCh
Q 019509 72 GPFDVVLHKLSGMEWCKIIEDYR--QKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI 149 (340)
Q Consensus 72 ~~~DvilhK~t~~~~~~~l~~~~--~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~ 149 (340)
.++|++|.|.++.... ...++ .+..|++||||+++|+.|.||+.+++.|.. .++|+|+|.++. +..+.
T Consensus 77 ~~~D~i~~R~~~~~~~--~~~~~~~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~-------~~ipvP~T~i~~-~~~~~ 146 (318)
T COG0189 77 DELDVIIMRKDPPFDF--ATRFLRLAERKGVPVINDPQSIRRCRNKLYTTQLLAK-------AGIPVPPTLITR-DPDEA 146 (318)
T ss_pred ccCCEEEEecCCchhh--HHHHHHHHHHcCCeEECCHHHHHhhhhHHHHHHHHHh-------cCCCCCCEEEEc-CHHHH
Confidence 4799999999986432 22222 345789999999999999999999999997 499999999996 33333
Q ss_pred hhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChh-hhhcc--------CCCeEEEecccCCCeEEEEEEECCEE-EE-
Q 019509 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPMLLQEFVNHGGILFKIYIIGETI-KV- 218 (340)
Q Consensus 150 ~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~-~L~~l--------~~p~v~QEfI~h~G~~~KV~ViG~~v-~~- 218 (340)
... ....++||+|+||+. || ++.++.++.+.+ +|.++ ..++++||||+..+++.|.+++||.. .+
T Consensus 147 ~~~-~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~ 222 (318)
T COG0189 147 AEF-VAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAI 222 (318)
T ss_pred HHH-HHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEE
Confidence 333 456789999999998 66 889999999998 76654 23699999999998777776666664 44
Q ss_pred -EEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCC
Q 019509 219 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRD 297 (340)
Q Consensus 219 -~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~ 297 (340)
++++-.. .++|++| . +.++..++ .+..+++++||.+++++||+.++||||+++. +
T Consensus 223 y~~~R~~~---~~~~R~N--------~------a~Gg~~e~----~~l~~e~~elA~kaa~~lGl~~~GVDiie~~---~ 278 (318)
T COG0189 223 YALARIPA---SGDFRSN--------L------ARGGRAEP----CELTEEEEELAVKAAPALGLGLVGVDIIEDK---D 278 (318)
T ss_pred eeeccccC---CCCceee--------c------cccccccc----cCCCHHHHHHHHHHHHHhCCeEEEEEEEecC---C
Confidence 3333211 1355544 1 22344332 1234668999999999999999999999873 3
Q ss_pred eEEEEeccCCCCCCC-c---ccc--HHHHHHHHHHHH
Q 019509 298 VFYVIDINYFPGYGK-M---PDY--EHIFTDFLLSLE 328 (340)
Q Consensus 298 ~~~ViEVN~fPg~~g-~---~~~--~~~l~~~l~~~i 328 (340)
++||+|||.+|++++ + +++ ...+.+++...+
T Consensus 279 g~~V~EVN~sP~~~~~i~~~~g~~~~~~~~~~ie~~~ 315 (318)
T COG0189 279 GLYVTEVNVSPTGKGEIERVTGVNIAGLIIDAIEKFV 315 (318)
T ss_pred CcEEEEEeCCCccccchhhhcCCchHHHHHHHHHHHH
Confidence 689999999998876 3 332 344555554443
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=235.53 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=178.8
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCC---CC-----------CCCCccEEEEccCch--hhHHHHHHHHHhCCCeeecChH
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPP 106 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~---l~-----------~q~~~DvilhK~t~~--~~~~~l~~~~~~~p~v~ViDp~ 106 (340)
....+|.++++++|++++.+|+++. +. ...++|++|.+.... ......++..+ ..|++++|++
T Consensus 13 ~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le-~~g~~v~n~~ 91 (300)
T PRK10446 13 YSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFE-MLGSYPLNES 91 (300)
T ss_pred hhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHH-HCCCceecCH
Confidence 4445899999999999999998752 11 123789999988753 22222233333 3568999999
Q ss_pred HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhh
Q 019509 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (340)
Q Consensus 107 ~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~ 186 (340)
.++..|+||..+.+.|.+ +|||+|+|.++. +.+.+.+.+ ....+||+|+||.. |+ +|.++.++.+.++
T Consensus 92 ~a~~~~~dK~~~~~~l~~-------~gip~P~t~~~~-~~~~~~~~~-~~~~~~P~VvKP~~--g~-~g~GV~~v~~~~~ 159 (300)
T PRK10446 92 VAIARARDKLRSMQLLAR-------QGIDLPVTGIAH-SPDDTSDLI-DMVGGAPLVVKLVE--GT-QGIGVVLAETRQA 159 (300)
T ss_pred HHHHhhhcHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHHHH-HHhCCCCEEEEECC--CC-CcccEEEEcCHHH
Confidence 999999999999999997 499999999874 332222222 22237999999998 44 5799999999877
Q ss_pred hhc-------cCCCeEEEecccC-CCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCC
Q 019509 187 LSE-------LEPPMLLQEFVNH-GGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (340)
Q Consensus 187 L~~-------l~~p~v~QEfI~h-~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (340)
+.. ++.++++||||++ .|+|++|+|+|+++..+.++..+. ++|+++ .+. ++...+
T Consensus 160 ~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~n--------~~~------g~~~~~ 222 (300)
T PRK10446 160 AESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE---GDFRSN--------LHR------GGAASV 222 (300)
T ss_pred HHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC---Cchhhe--------ecc------CCeecc
Confidence 653 3568999999986 499999999999976554432221 133322 111 111111
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCcccc-----HHHHHHHHHHHHHhhc
Q 019509 259 GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY-----EHIFTDFLLSLEQSKC 332 (340)
Q Consensus 259 ~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~-----~~~l~~~l~~~i~~~~ 332 (340)
.+..++++++|.+++++||+.++|||++.+. .| +||+|||.+|||++++.. .+.+.+++.+.+..++
T Consensus 223 ----~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 294 (300)
T PRK10446 223 ----ASITPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEY 294 (300)
T ss_pred ----CCCCHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhccccc
Confidence 1124568999999999999999999999864 23 799999999999887654 4566666666554433
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.96 E-value=1.1e-27 Score=225.28 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=178.0
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCC-------CCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLS-------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~-------~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~ 116 (340)
..+.|.++++++|++++.+|+.+... +..++|++|.|.........+.... +.-|++++||+++++.+.||.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l-e~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLL-EALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHH-HHCCCcEECcHHHHHHHhhHH
Confidence 34578999999999999987764222 2357899999954432212223333 346799999999999999999
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------
Q 019509 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (340)
Q Consensus 117 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------ 190 (340)
.+++.|.+ +|||+|+|+.+. +.....+. ...++||+|+||.. |+ +++++.++.+.+++.++
T Consensus 90 ~~~~~l~~-------~gip~P~t~~~~-~~~~~~~~--~~~~~~P~vvKP~~--g~-~g~gv~~v~~~~~l~~~~~~~~~ 156 (280)
T TIGR02144 90 FTYLKLAK-------AGVPTPRTYLAF-DREAALKL--AEALGYPVVLKPVI--GS-WGRLVALIRDKDELESLLEHKEV 156 (280)
T ss_pred HHHHHHHH-------CCcCCCCeEeeC-CHHHHHHH--HHHcCCCEEEEECc--CC-CcCCEEEECCHHHHHHHHHHHHh
Confidence 99999887 499999999875 32222221 24578999999988 44 57899999999876541
Q ss_pred -----CCCeEEEecccCCCeEEEEEEECCEEEE-EEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC
Q 019509 191 -----EPPMLLQEFVNHGGILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 264 (340)
Q Consensus 191 -----~~p~v~QEfI~h~G~~~KV~ViG~~v~~-~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 264 (340)
..++++||||++.|++++++|+|+++.+ +.|.+ .+ |+.+. +. ++...+ .+
T Consensus 157 ~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~-----~~~~~--------~~------g~~~~~----~~ 212 (280)
T TIGR02144 157 LGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NH-----WRTNT--------AR------GGKAEP----CP 212 (280)
T ss_pred hcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cc-----hhhhh--------hc------CCceec----cC
Confidence 2479999999977999999999999764 55544 22 22211 00 111111 12
Q ss_pred ChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCcc-----ccHHHHHHHHHHHH
Q 019509 265 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP-----DYEHIFTDFLLSLE 328 (340)
Q Consensus 265 ~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~-----~~~~~l~~~l~~~i 328 (340)
..++++++|.++.+++|+.++|||++.+.+ | .++|+|||..|||.++. ++...+.+++.+++
T Consensus 213 ~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 213 LDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 235689999999999999999999998743 3 58999999999999864 44677778777665
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.95 E-value=2.2e-26 Score=215.21 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=170.6
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCC---CC----CCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPL---SD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l---~~----q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~ 116 (340)
+.+.|.++++++|+++..+++.+.. .. ...+|+++.|.........+.+..+. -+++++|+++++..+.||.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 6668999999999999999986432 11 45689999998432222234444433 5789999999999999999
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------
Q 019509 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (340)
Q Consensus 117 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------ 190 (340)
.+++.|.+. ||++|+|..+. +.++..+. ...++||+|+||..++ .|.++.++.+.+++..+
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~--~~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKL--IEEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHH--HHhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHHH
Confidence 999999974 89999999885 33333332 2357899999999844 46899999999887532
Q ss_pred -C---CCeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCC
Q 019509 191 -E---PPMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (340)
Q Consensus 191 -~---~p~v~QEfI~h~-G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 265 (340)
. .++++||||++. |.+++|+|+|+++....++..+ ++|.++ .+. ++...+ .+.
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~------g~~~~~----~~l 215 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LAR------GGKAEP----CPL 215 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhc------CCeeee----cCC
Confidence 2 379999999977 4899999999998765444321 123221 111 111111 112
Q ss_pred hhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCccc
Q 019509 266 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 266 ~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 315 (340)
.++++++|.+++++||+.++|||++++. +| ++||+|||..||+.++..
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~~ 263 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSVK 263 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhHH
Confidence 3568999999999999999999999975 33 699999999999987653
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.94 E-value=1.2e-26 Score=207.65 Aligned_cols=168 Identities=28% Similarity=0.457 Sum_probs=98.1
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc--
Q 019509 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 190 (340)
Q Consensus 113 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-- 190 (340)
.||+.++++|++ +|||+|+|.++. +.++..+.+...+ +||+|+||.. |+ .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~-------~gipvP~t~~~~-~~~~~~~~~~~~~-~~p~ViKp~~--g~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAK-------AGIPVPETRVTN-SPEEAKEFIEELG-GFPVVIKPLR--GS-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHH-------TT-----EEEES-SHHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCEEEEC-CHHHHHHHHHHhc-CCCEEEeeCC--CC-CCCEEEEecCHHHHHHHHH
Confidence 589999999997 499999999996 3444444444433 8999999987 44 57899999999877653
Q ss_pred -----CCCeEEEecccCCC-eEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC
Q 019509 191 -----EPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 264 (340)
Q Consensus 191 -----~~p~v~QEfI~h~G-~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 264 (340)
+.++++|+||++.+ +|+||+|||++++.+++++.++ ++|+++. + .++..++ ..
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n~--------~------~g~~~~~----~~ 128 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTNL--------S------RGGKVEP----YD 128 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhhh--------c------cCceEEE----ec
Confidence 57999999999885 9999999999998766665433 3555431 1 1222222 11
Q ss_pred ChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 265 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 265 ~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
..++++++|.++++++|++++|||++..+ +++||+|||.+|||++++..
T Consensus 129 l~~e~~~~a~~~~~~lgl~~~giDi~~~~---~~~~v~EvN~~~~~~~~~~~ 177 (190)
T PF08443_consen 129 LPEEIKELALKAARALGLDFAGIDILDTN---DGPYVLEVNPNPGFRGIEEA 177 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET---TEEEEEEEETT---TTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEEecC---CCeEEEEecCCchHhHHHHH
Confidence 23568999999999999999999977653 36999999999999998765
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.92 E-value=6.9e-24 Score=203.87 Aligned_cols=249 Identities=15% Similarity=0.159 Sum_probs=169.2
Q ss_pred EEEEEecC---CCcccccchHHHHHHHhCCCEEEEecCCCCC----------------C--------------CCCCccE
Q 019509 30 VVGYALTS---KKKKSFLQPKLEILARNKGISFVAIDQNRPL----------------S--------------DQGPFDV 76 (340)
Q Consensus 30 ~VG~~~~~---kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l----------------~--------------~q~~~Dv 76 (340)
.||+.+-| -|.......+|..+|+++||++..+++++.. . +...||+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 47777765 3667778888999999999999999886411 0 0147899
Q ss_pred EEEccCchhh-----HHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhh
Q 019509 77 VLHKLSGMEW-----CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD 151 (340)
Q Consensus 77 ilhK~t~~~~-----~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~ 151 (340)
+|.|-..... ...+.++.+ ..|++|+|++++++.+.||.++++++. ++|+|.+.. +.+.+.+
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le-~~g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~ 148 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELAD-PTGTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRA 148 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHH-hCCCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHH
Confidence 9999754321 122333333 357999999999999999998776521 699999764 4433433
Q ss_pred HHHhhCCCCcEEEecCCCCCCCcceeeEEEeCh-hhh-------hcc-CCCeEEEecccC-CCeEEEEEEECCEEEE-EE
Q 019509 152 QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIKV-VR 220 (340)
Q Consensus 152 ~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~-~~L-------~~l-~~p~v~QEfI~h-~G~~~KV~ViG~~v~~-~~ 220 (340)
.+. ..+ |+|+||+. |+ +++++.++.+. ..+ ..+ ..|+++|+||+. .+.|+||+|+|++++. +.
T Consensus 149 ~~~--~~g-~vVvKPl~--G~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai 222 (312)
T TIGR01380 149 FLA--EHG-DIVLKPLD--GM-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAV 222 (312)
T ss_pred HHH--HcC-CEEEEECC--CC-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEE
Confidence 333 234 99999998 54 67889988652 222 222 468999999986 3689999999999765 45
Q ss_pred ee-cCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHH---HHhCCcEeEEEEEEecCcC
Q 019509 221 RF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMR 296 (340)
Q Consensus 221 R~-sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~---~~lGl~l~GvDvi~~~~~g 296 (340)
|| +.. ++|++|. + .++...+ .++.++..++|.+++ +++|+.++|||+| +
T Consensus 223 ~R~~~~----gd~r~N~--------~------~Gg~~~~----~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---g-- 275 (312)
T TIGR01380 223 ARIPAG----GEFRGNL--------A------VGGRGEA----TELSERDREICADVAPELKRRGLLFVGIDVI---G-- 275 (312)
T ss_pred EecCCC----CCccccc--------c------CCceeec----cCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe---C--
Confidence 44 322 2455431 1 1222221 122345789999988 6779999999999 2
Q ss_pred CeEEEEeccCC--CCCCCcccc-----HHHHHHHHHH
Q 019509 297 DVFYVIDINYF--PGYGKMPDY-----EHIFTDFLLS 326 (340)
Q Consensus 297 ~~~~ViEVN~f--Pg~~g~~~~-----~~~l~~~l~~ 326 (340)
++|+|||.. +||.+++.. +..+.+++.+
T Consensus 276 --~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 276 --GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred --CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHh
Confidence 369999975 499877654 4555555544
No 9
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.92 E-value=2.4e-24 Score=218.29 Aligned_cols=266 Identities=21% Similarity=0.276 Sum_probs=200.4
Q ss_pred CCCCcEEEEEEecCCCcccccc-hHHHHHHHhCCCEEEEec----CCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCC
Q 019509 24 LQPERLVVGYALTSKKKKSFLQ-PKLEILARNKGISFVAID----QNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (340)
Q Consensus 24 ~~~~~~~VG~~~~~kK~~~~~~-~~l~~~a~~~gi~~~~id----~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p 98 (340)
+.....+||.|.+.||.++--+ +.|-+++...-++++..- ++.|++.|+-+|++|...+....+...++|++.+.
T Consensus 36 p~~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRn 115 (1018)
T KOG1057|consen 36 PPERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRN 115 (1018)
T ss_pred CCccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcC
Confidence 4455679999999999877644 456777776666666532 57889999999999999999888899999997543
Q ss_pred CeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCCh-hh-HHH--------hhCCCCcEEEecCC
Q 019509 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSI-PD-QVF--------EAGLKLPLVAKPLV 168 (340)
Q Consensus 99 ~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~-~~-~l~--------~~~l~~PvVvKP~~ 168 (340)
+ .|||++..++.++||...|+.|.. .||++|+..++.++..+- .. .+. -..+.-|+|-||+.
T Consensus 116 P-FviNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs 187 (1018)
T KOG1057|consen 116 P-FVINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVS 187 (1018)
T ss_pred C-eeeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCC
Confidence 3 788999999999999999999996 599999999997664321 11 111 12356699999997
Q ss_pred CCCCCcceeeEEEeChhh-------hhcc---------------CCCeEEEecccCCCeEEEEEEECCEEE-EEEeecCC
Q 019509 169 VDGSAKSHELFLAYDRFS-------LSEL---------------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLP 225 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~-------L~~l---------------~~p~v~QEfI~h~G~~~KV~ViG~~v~-~~~R~sl~ 225 (340)
| +.|+++|.+..+. |+++ ...++++||+|++|.|.|||.||..+. +-.|+| |
T Consensus 188 --~--EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKS-P 262 (1018)
T KOG1057|consen 188 --A--EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-P 262 (1018)
T ss_pred --c--ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccC-c
Confidence 3 5899999998632 4443 246999999999999999999999964 568888 5
Q ss_pred Cccchhhhccce-eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEec
Q 019509 226 NVSKRELAKVVS-VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 304 (340)
Q Consensus 226 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEV 304 (340)
.++.-..+..+| ..+|+.+ + .+..+.+|.+++-+++..++|||+++.+| .-|||||
T Consensus 263 vvDGkV~Rns~GKEvRYpv~------------------L--s~~EK~iA~KVciAF~Q~VCGFDLLRa~G---~SYVcDV 319 (1018)
T KOG1057|consen 263 VVDGKVERNSDGKEVRYPVI------------------L--NSSEKQIARKVCIAFKQTVCGFDLLRANG---KSYVCDV 319 (1018)
T ss_pred cccceeeecCCCceeeceee------------------c--ChhhHHHHhHHHhhccccccchHHhhcCC---ceEEEec
Confidence 553211111111 2222221 1 23348899999999999999999998764 5799999
Q ss_pred cCCCCCCCccccHHHHHHHHH
Q 019509 305 NYFPGYGKMPDYEHIFTDFLL 325 (340)
Q Consensus 305 N~fPg~~g~~~~~~~l~~~l~ 325 (340)
|.|...|+.-.|+.-.+..|.
T Consensus 320 NGfSFVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 320 NGFSFVKNSNKYYDDCAKILG 340 (1018)
T ss_pred cceeeeecchhhhHHHHHHHh
Confidence 999999999988765555554
No 10
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.91 E-value=2e-22 Score=192.08 Aligned_cols=238 Identities=18% Similarity=0.201 Sum_probs=168.1
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCC---CCCccEEEEccCchhh-HHHHHHHHHhCCCeeecCh-HHHHHHhcCHHHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSM 118 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~---q~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~ 118 (340)
.-..+.++.+++|++++.|+.+..+.+ ...+|++|....+... ...++.+.+. -+++++.+ +.++..|.||..+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~ 102 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIPYTGSGVLASALAMDKLRT 102 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHhCHHHH
Confidence 446789999999999999988765553 4578999998754211 1345666654 48999876 7999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------C
Q 019509 119 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------E 191 (340)
Q Consensus 119 ~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~ 191 (340)
.+.|.+ .|||+|++..+.. .+.... ....++||+|+||..++ +|.++.++.+.+++.+. .
T Consensus 103 k~~l~~-------~gIp~p~~~~~~~-~~~~~~--~~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~ 169 (304)
T PRK01372 103 KLVWQA-------AGLPTPPWIVLTR-EEDLLA--AIDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYD 169 (304)
T ss_pred HHHHHH-------CCCCCCCEEEEeC-cchHHH--HHhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 999987 4999999999863 333222 23468999999999844 45889999999887542 5
Q ss_pred CCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC--ChhHH
Q 019509 192 PPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLL 269 (340)
Q Consensus 192 ~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~ 269 (340)
.++++||||+ |+++.|.|+|+++....+....+ +.++|......+.. ....|. .++ ..+.+
T Consensus 170 ~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~p~--~~~~~~~~~l 232 (304)
T PRK01372 170 DEVLVEKYIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEAKYLAGGT---QYICPA--GLPAEIEAEL 232 (304)
T ss_pred CcEEEEcccC--CEEEEEEEECCCccceEEEEecC----------CEEeeeccccCCCe---EEEeCC--CCCHHHHHHH
Confidence 6899999996 99999999999865433322111 12222221111100 000010 111 13458
Q ss_pred HHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 270 ERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 270 ~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
+++|.++.++||+. +++||++++. +| ++||+|||..||+.+-.
T Consensus 233 ~~~a~~~~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 233 QELALKAYRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMTSHS 276 (304)
T ss_pred HHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCCccc
Confidence 89999999999995 6679999985 34 69999999999998643
No 11
>PRK05246 glutathione synthetase; Provisional
Probab=99.91 E-value=5.3e-23 Score=197.97 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=172.1
Q ss_pred EEEEEecC---CCcccccchHHHHHHHhCCCEEEEecCCCCCC---------------C---------------CCCccE
Q 019509 30 VVGYALTS---KKKKSFLQPKLEILARNKGISFVAIDQNRPLS---------------D---------------QGPFDV 76 (340)
Q Consensus 30 ~VG~~~~~---kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~---------------~---------------q~~~Dv 76 (340)
.||+.+-| -|...+...+|.++|+++|+++..+++.+... . ...||+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 57888875 36677888889999999999999988754110 0 124899
Q ss_pred EEEccCchh-----hHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhh
Q 019509 77 VLHKLSGME-----WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD 151 (340)
Q Consensus 77 ilhK~t~~~-----~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~ 151 (340)
|+.|..... ....+.+..+. .|++++|++++++.+.||+.+++++. ++|+|.+.. +.+.+.+
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~ 149 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRA 149 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHH
Confidence 999965432 11223333333 48999999999999999998776522 699998764 4333333
Q ss_pred HHHhhCCCCcEEEecCCCCCCCcceeeEEEeCh-hhh-------hcc-CCCeEEEecccCC-CeEEEEEEECCEEEE-E-
Q 019509 152 QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSL-------SEL-EPPMLLQEFVNHG-GILFKIYIIGETIKV-V- 219 (340)
Q Consensus 152 ~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~-~~L-------~~l-~~p~v~QEfI~h~-G~~~KV~ViG~~v~~-~- 219 (340)
.+.. .+ |+|+||+. |+ ++.++.++... ..+ ... ..++++|+||+.. +.|+||+|+|+++.+ .
T Consensus 150 ~~~~--~~-~vVlKP~~--G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~ 223 (316)
T PRK05246 150 FRAE--HG-DIILKPLD--GM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYAL 223 (316)
T ss_pred HHHH--CC-CEEEEECC--CC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhee
Confidence 3333 33 99999998 55 57889988542 222 223 4699999999875 679999999999876 4
Q ss_pred EeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHH---HHhCCcEeEEEEEEecCcC
Q 019509 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMR 296 (340)
Q Consensus 220 ~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~---~~lGl~l~GvDvi~~~~~g 296 (340)
.|.+.. ++|++| ++. ++...+ .+..++..++|.+++ +.+|+.++|||++ +
T Consensus 224 ~R~~~~----~~~rtN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli---~-- 276 (316)
T PRK05246 224 ARIPAG----GETRGN--------LAA------GGRGEA----TPLTERDREICAAIGPELKERGLIFVGIDVI---G-- 276 (316)
T ss_pred EecCCC----CCcccC--------ccC------CceEec----cCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---C--
Confidence 443322 244433 222 222221 112345789999888 5779999999999 3
Q ss_pred CeEEEEeccCC-C-CCCCcccc-----HHHHHHHHHHHHH
Q 019509 297 DVFYVIDINYF-P-GYGKMPDY-----EHIFTDFLLSLEQ 329 (340)
Q Consensus 297 ~~~~ViEVN~f-P-g~~g~~~~-----~~~l~~~l~~~i~ 329 (340)
. ||+|||.+ | ||.+++.. +..+.+++.+.+.
T Consensus 277 -~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 277 -D-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred -C-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 1 69999986 6 89888765 5667777666543
No 12
>PRK12458 glutathione synthetase; Provisional
Probab=99.91 E-value=7.1e-23 Score=198.88 Aligned_cols=246 Identities=16% Similarity=0.189 Sum_probs=167.8
Q ss_pred ccccchHHHHHHHhCCCEEEEecCCCCCCC--------------------------------------CCCccEEEEccC
Q 019509 41 KSFLQPKLEILARNKGISFVAIDQNRPLSD--------------------------------------QGPFDVVLHKLS 82 (340)
Q Consensus 41 ~~~~~~~l~~~a~~~gi~~~~id~~~~l~~--------------------------------------q~~~DvilhK~t 82 (340)
....+.+|..+|.++||++..+++.+.... ...||+|++|-.
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 566777899999999999998877541100 235899999975
Q ss_pred ch---hhHHHHHHH------HHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHH
Q 019509 83 GM---EWCKIIEDY------RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV 153 (340)
Q Consensus 83 ~~---~~~~~l~~~------~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l 153 (340)
.. .....+.++ ..+..+++++|++++++.|.||..++++ . .+++|+|++.. +.+.+.+.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l-~---------~~~vP~T~v~~-~~~~~~~~~ 157 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSF-P---------EEVRPTTHISR-NKEYIREFL 157 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhh-c---------cCCCCCEEEeC-CHHHHHHHH
Confidence 43 223333322 2244689999999999999999987543 3 14799999874 433333332
Q ss_pred HhhCCCC-cEEEecCCCCCCCcceeeEEEeChhh--hhcc------CCCeEEEecccCC-CeEEEEEEECCEEE------
Q 019509 154 FEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFS--LSEL------EPPMLLQEFVNHG-GILFKIYIIGETIK------ 217 (340)
Q Consensus 154 ~~~~l~~-PvVvKP~~a~Gs~~sh~m~iv~~~~~--L~~l------~~p~v~QEfI~h~-G~~~KV~ViG~~v~------ 217 (340)
. ..++ |+|+||+. |+ +++++.++.+.+. +..+ ..++++||||+.. +.|+||+|+|++++
T Consensus 158 ~--~~~~~pvVvKPl~--G~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~ 232 (338)
T PRK12458 158 E--ESPGDKMILKPLQ--GS-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHY 232 (338)
T ss_pred H--HcCCCeEEEEECC--CC-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccce
Confidence 2 3444 59999998 44 5789999986553 3221 4589999999863 67999999999988
Q ss_pred EEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHh---CCcEeEEEEEEecC
Q 019509 218 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL---GLRLFNIDMIREHG 294 (340)
Q Consensus 218 ~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~l---Gl~l~GvDvi~~~~ 294 (340)
++.+|.... ++|+++. + .++...+ .+ +.++.+++|.+++.+| ||.+.|||++ +
T Consensus 233 ~a~~R~~~~---~d~RsN~--------~------~Gg~~~~--~~--l~~~~~~ia~~~~~~l~~~GL~~~gVDli---~ 288 (338)
T PRK12458 233 AAMRRVPAG---GDVRSNV--------H------AGGSVVK--HT--LTKEELELCEAIRPKLVRDGLFFVGLDIV---G 288 (338)
T ss_pred eEEEEecCC---CCeeecc--------c------CCCcccC--cC--CCHHHHHHHHHHHHHHhhcCCeEEeEEEE---C
Confidence 665554221 3454331 1 1222221 12 2356899999999988 9999999999 2
Q ss_pred cCCeEEEEeccC-CC-CCCCcc-----ccHHHHHHHHHHHHHh
Q 019509 295 MRDVFYVIDINY-FP-GYGKMP-----DYEHIFTDFLLSLEQS 330 (340)
Q Consensus 295 ~g~~~~ViEVN~-fP-g~~g~~-----~~~~~l~~~l~~~i~~ 330 (340)
+ +|+|||. +| |+.++. |++..+.+++++.+..
T Consensus 289 -~---~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 289 -D---KLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred -C---EEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 2 5899998 78 655533 4467888888877644
No 13
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.90 E-value=1.5e-21 Score=186.70 Aligned_cols=241 Identities=17% Similarity=0.172 Sum_probs=162.5
Q ss_pred cchHHHHHHHhCCCEEEEecCCCC-------CC--------CCCCccEEEEccCchhh-HHHHHHHHHhCCCeeecCh-H
Q 019509 44 LQPKLEILARNKGISFVAIDQNRP-------LS--------DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-P 106 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~-------l~--------~q~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~ 106 (340)
....+.++.+++|++++.++.+.. +. ....+|+||.-+..... ...++...+ .-|++++++ +
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le-~~gip~~g~~~ 97 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLE-LMGIPYTGSGV 97 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHH-HcCCCccCCCH
Confidence 444688999999999999998761 11 11568999986543211 123455444 458999886 8
Q ss_pred HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhH---HHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ---VFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 107 ~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~---l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
.++..|.||..+.+.|.+ +|||+|++.++..+.....+. .....++||+|+||..++ +|.++.++.|
T Consensus 98 ~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~~ 167 (315)
T TIGR01205 98 LASALSMDKLLTKLLWKA-------LGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVKS 167 (315)
T ss_pred HHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEECC
Confidence 999999999999999997 499999999886222221111 012468999999999744 4688999999
Q ss_pred hhhhhcc-------CCCeEEEecccCCCeEEEEEEEC-CEEEE-EEeecCCCccchhhhccceeeeccccccccc--ccC
Q 019509 184 RFSLSEL-------EPPMLLQEFVNHGGILFKIYIIG-ETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAA--SAD 252 (340)
Q Consensus 184 ~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG-~~v~~-~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 252 (340)
.++|... ..++++||||+ |++|.|.|+| ++... +.+.... ..+++|......+. ...
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 235 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYVI 235 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEEe
Confidence 9888643 56899999995 9999999999 44322 2211100 00122222111110 001
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 253 DADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
+..+++ ...++++++|.++.++||+ ++++||++++. .| ++||+|||..||+....
T Consensus 236 p~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 236 PAPLDE-----ELEEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCCcc
Confidence 111111 1134689999999999999 68899999975 33 69999999999998643
No 14
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.89 E-value=2.1e-21 Score=199.41 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=159.7
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCCCC-CCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHh
Q 019509 46 PKLEILARNKGISFVAIDQNRPLSDQ-GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 124 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~~q-~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~ 124 (340)
+.++++|+++|++++.+|.+..+-.. ..-+.++.+ .....++++.++..|.||..+.++|.+
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~-----------------~s~~~~~s~~ai~~~~DK~~tk~lL~~ 307 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR-----------------ESLSELTSAVAMSLCDDKRLTRRLVSE 307 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE-----------------eccCCCCCHHHHHHhcCHHHHHHHHHH
Confidence 67999999999999998755322210 011222222 112366799999999999999999997
Q ss_pred ccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE-EeChhhhhcc-------CCCeEE
Q 019509 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSEL-------EPPMLL 196 (340)
Q Consensus 125 ~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p~v~ 196 (340)
+|||+|++.++. +.++..+.. ..++ |+|+||.. |+ ++.+|.+ +.++++|.+. ...+++
T Consensus 308 -------aGIpVP~~~~~~-~~~~~~~~~--~~~G-~vVVKP~~--G~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlv 373 (547)
T TIGR03103 308 -------AGLQVPEQQLAG-NGEAVEAFL--AEHG-AVVVKPVR--GE-QGKGISVDVRTPDDLEAAIAKARQFCDRVLL 373 (547)
T ss_pred -------cCcCCCCEEEEC-CHHHHHHHH--HHhC-CEEEEECC--CC-CCcCeEEecCCHHHHHHHHHHHHhcCCcEEE
Confidence 499999999985 333333322 2455 79999987 54 6789997 8999887642 458999
Q ss_pred EecccCCCeEEEEEEECCEEEEEEeecCCCccchhh---hc-----c-------ce-----------------eeecccc
Q 019509 197 QEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL---AK-----V-------VS-----------------VFRFPRV 244 (340)
Q Consensus 197 QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~---~~-----~-------~~-----------------~~~~~~~ 244 (340)
|+|| .|.++|++|||++++++.++-.+.+-.+.. .. + .+ -|++.++
T Consensus 374 Ee~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V 451 (547)
T TIGR03103 374 ERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDV 451 (547)
T ss_pred EEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCcccc
Confidence 9999 499999999999998765543343211000 00 0 00 0111111
Q ss_pred cccc---------cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCcc-
Q 019509 245 SSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP- 314 (340)
Q Consensus 245 ~~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~- 314 (340)
...| +.++++....... ...+..+++|.++++++|+.++|||++.++-++..++|||||..||+.+-+
T Consensus 452 ~~~G~~v~l~~~~Nl~tGg~~~dvtd--~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~~ 529 (547)
T TIGR03103 452 LPEGQRLRVRRTANLHTGGTIHDVTE--QLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGLANHEP 529 (547)
T ss_pred CCCCCEEEEecCCcccCCCeeEeccc--ccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCccccccCC
Confidence 1000 0112222111101 134568999999999999999999999875344468999999999999765
Q ss_pred -ccHHHHHHHH
Q 019509 315 -DYEHIFTDFL 324 (340)
Q Consensus 315 -~~~~~l~~~l 324 (340)
+..+.+.|+|
T Consensus 530 ~~~~~~~~d~l 540 (547)
T TIGR03103 530 QPTAERFIDLL 540 (547)
T ss_pred CchHHHHHHHh
Confidence 3345555544
No 15
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.88 E-value=1.6e-20 Score=179.03 Aligned_cols=231 Identities=16% Similarity=0.221 Sum_probs=160.2
Q ss_pred HHHHHHHhCCCEEEEecCCCCCC----CCCCccEEEEccCchhh-HHHHHHHHHhCCCeeecCh-HHHHHHhcCHHHHHH
Q 019509 47 KLEILARNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQ 120 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~----~q~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~~ 120 (340)
.+.++.++.|++++.++....+. ....+|++|..+..... ...++.+.+. -|++++.+ +.++..|+||..+.+
T Consensus 23 ~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~ 101 (299)
T PRK14571 23 RVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYR 101 (299)
T ss_pred HHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHH
Confidence 57888899999999998765332 23579999999876421 1346666654 57999865 899999999999888
Q ss_pred HHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCC
Q 019509 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPP 193 (340)
Q Consensus 121 ~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p 193 (340)
.|.. +|++|++..+.. .. ....++||+|+||..++| |.+|.+++|.++|.+. ..+
T Consensus 102 ~l~~--------~ip~p~~~~~~~-~~------~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~ 163 (299)
T PRK14571 102 FLKG--------TVEIPDFVEIKE-FM------KTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGS 163 (299)
T ss_pred HHhc--------CCCCCCEEEEec-hh------hhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCc
Confidence 8762 699999998842 11 124589999999987443 5889999999887542 357
Q ss_pred eEEEecccCCCeEEEEEEECCE----EEEEEeecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChh
Q 019509 194 MLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRP 267 (340)
Q Consensus 194 ~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~ 267 (340)
+++||||+ |+++.|.|+|+. +....... + ...+|+|...+..+.. ..+..+++ ...+
T Consensus 164 vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~k~~~g~~~~~~p~~l~~-----~~~~ 226 (299)
T PRK14571 164 VIVQEYIP--GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVAKYTKGETEFILPAPLNP-----EEER 226 (299)
T ss_pred EEEEcccc--ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCccccccccCCCCeeEEeCCCCCH-----HHHH
Confidence 99999995 999999999763 22221111 1 0112232222111100 00111111 1134
Q ss_pred HHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 268 LLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 268 ~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
.++++|.++.++||+ ++++||++.++ + ++||+|||..||+.....+
T Consensus 227 ~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 227 LVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDL 273 (299)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHH
Confidence 588999999999997 78889999863 2 6999999999999976544
No 16
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.85 E-value=1.3e-19 Score=191.75 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=155.4
Q ss_pred cccchHHHHHHHhCCCEEEEecCCCCCCCC---CCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHH
Q 019509 42 SFLQPKLEILARNKGISFVAIDQNRPLSDQ---GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSM 118 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~id~~~~l~~q---~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~ 118 (340)
.+++..++++|+++||++..+|.+..+... ...+.++. -.....|+..+...|.||..+
T Consensus 431 ~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 431 ELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred ChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHH
Confidence 456778999999999999999986543321 11222211 124567888899999999999
Q ss_pred HHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC---hhhhhc------
Q 019509 119 LQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE------ 189 (340)
Q Consensus 119 ~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~---~~~L~~------ 189 (340)
.++|.+ +|||+|++.++. +.+.+.+.+. .-++||+|+||.. |+ +|.||.++.+ .+++.+
T Consensus 493 k~lL~~-------~GIpvP~~~~~~-~~e~a~~~~~-~~~g~PvVVKP~~--g~-~G~GV~~~~~~~~~eel~~A~~~a~ 560 (752)
T PRK02471 493 KKILAE-------AGFPVPAGDEFT-SLEEALADYS-LFADKAIVVKPKS--TN-FGLGISIFKEPASLEDYEKALEIAF 560 (752)
T ss_pred HHHHHH-------CCcCCCCEEEEc-CHHHHHHHHH-HhcCCCEEEEECC--CC-CcCCeEEecCcCCHHHHHHHHHHHH
Confidence 999997 499999999885 3323322222 2248999999997 44 5789988754 454433
Q ss_pred -cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhc--------cc----ee------------------
Q 019509 190 -LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----SV------------------ 238 (340)
Q Consensus 190 -l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~--------~~----~~------------------ 238 (340)
....+++||||+ |++|||+|+|++++++.++..+++..++..+ +. |.
T Consensus 561 ~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~ 638 (752)
T PRK02471 561 REDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLM 638 (752)
T ss_pred hcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHH
Confidence 246799999994 9999999999999876665555554322211 10 00
Q ss_pred -----eecccccccc---------cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecC------cCCe
Q 019509 239 -----FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDV 298 (340)
Q Consensus 239 -----~~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~------~g~~ 298 (340)
+++.+|...| +.+.++... +.+. ...+..+++|.++++++|+.++|||++.++- ...+
T Consensus 639 L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~-dvtd-~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~ 716 (752)
T PRK02471 639 LKQQGLTPDSIPKKGEIVYLRENSNISTGGDSI-DMTD-DMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPN 716 (752)
T ss_pred HHHcCCCccccCCCCCEEEecCCCccCCCCeeE-eccc-ccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCC
Confidence 1111111111 011111110 0111 1245589999999999999999999998641 1115
Q ss_pred EEEEeccCCCCCC
Q 019509 299 FYVIDINYFPGYG 311 (340)
Q Consensus 299 ~~ViEVN~fPg~~ 311 (340)
+.|||||..||+.
T Consensus 717 ~~IiEvN~~P~l~ 729 (752)
T PRK02471 717 YGIIELNFNPAMY 729 (752)
T ss_pred eEEEEecCCCchh
Confidence 7899999999975
No 17
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.85 E-value=4.9e-20 Score=194.96 Aligned_cols=233 Identities=17% Similarity=0.232 Sum_probs=152.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhcc
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN 126 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~ 126 (340)
.++++|+++|+.+..++-.. +..+........++. .. ..-++..++..+.||..+.++|.+
T Consensus 164 ~I~~~A~~~gi~~~~l~~~~-----------~v~lgyG~~~~~i~~-----~~-~~~~s~~a~~i~~DK~~tk~lL~~-- 224 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDGS-----------LVQLGYGKYQRRIQA-----AE-TDQTSAIAVDIACDKELTKRLLAA-- 224 (727)
T ss_pred HHHHHHHHcCCCEEEeCCCC-----------eEecCCcHHHHHHHH-----hc-CCCCcHHHHHHhCCHHHHHHHHHH--
Confidence 78899999999998876433 122222111111211 11 236788999999999999999997
Q ss_pred ccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE-EeChhhhhcc-------CCCeEEEe
Q 019509 127 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSEL-------EPPMLLQE 198 (340)
Q Consensus 127 ~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p~v~QE 198 (340)
.|||+|++..+. +.+++.+. ...++||+|+||.. |+ ++.+|.+ +.++++|.+. ..++++||
T Consensus 225 -----~GIPvP~~~~v~-s~~~a~~~--a~~iG~PvVVKP~~--G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 225 -----AGVPVPEGRVVT-SAEDAWEA--AEEIGYPVVVKPLD--GN-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred -----CCcCCCCeeEeC-CHHHHHHH--HHHcCCCEEEEECC--CC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 499999999875 33333332 34689999999987 54 5789998 8999887642 46899999
Q ss_pred cccCCCeEEEEEEECCEEEEEEeecCCCccchhhh------c--cc----e-----------------------eeeccc
Q 019509 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA------K--VV----S-----------------------VFRFPR 243 (340)
Q Consensus 199 fI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~------~--~~----~-----------------------~~~~~~ 243 (340)
||+ |.+|||+|+|++++++.|+..+.+-.+... . |. | -++..+
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~s 371 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDS 371 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccc
Confidence 995 999999999999998877765544211000 0 00 0 001111
Q ss_pred cccc---------ccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecC----cCCeEEEEeccCCCCC
Q 019509 244 VSSA---------AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG----MRDVFYVIDINYFPGY 310 (340)
Q Consensus 244 ~~~~---------~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~----~g~~~~ViEVN~fPg~ 310 (340)
+... ++.+.++.......+ ..+.+.++|.++++++|++++|||++.++- ...+..|||||..||+
T Consensus 372 V~~~G~~v~l~~~~N~s~Gg~~~d~td~--i~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi 449 (727)
T PRK14016 372 VPPKGEKVYLRRNANLSTGGTAIDVTDE--VHPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGL 449 (727)
T ss_pred cCCCCCEEEEeccccccCCCeeEecccc--cCHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcch
Confidence 1111 111122221111111 235589999999999999999999998641 0123689999999999
Q ss_pred CCc
Q 019509 311 GKM 313 (340)
Q Consensus 311 ~g~ 313 (340)
...
T Consensus 450 ~~~ 452 (727)
T PRK14016 450 RMH 452 (727)
T ss_pred hhc
Confidence 853
No 18
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.84 E-value=1.8e-19 Score=174.67 Aligned_cols=214 Identities=19% Similarity=0.199 Sum_probs=146.1
Q ss_pred CccEEEEccCchhh-HHHHHHHHHhCCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC--
Q 019509 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 148 (340)
Q Consensus 73 ~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-- 148 (340)
.+|++++=+..... -..++.+.+. .|++.+-+ +.+...|+||..+.+.|.+ .|||+|+++.+......
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAA-------AGIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEeccccchh
Confidence 58999887654211 1346777654 57887754 7899999999999999997 49999999988633221
Q ss_pred hhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEe
Q 019509 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (340)
Q Consensus 149 ~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R 221 (340)
.... ....++||+|+||..++| |.++.++.+.++|.+ ....+++|+||+ |+++.|.|+|+...+
T Consensus 153 ~~~~-~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~~--- 223 (333)
T PRK01966 153 SLAE-IEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPKA--- 223 (333)
T ss_pred hHHH-HHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCeE---
Confidence 1121 234689999999986443 579999999988764 357899999996 899999999963111
Q ss_pred ecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCe
Q 019509 222 FSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDV 298 (340)
Q Consensus 222 ~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~ 298 (340)
++. +++....++|+|...+..+.. ..++.+++ ...+.++++|.++.++||+ +++.+|++.+. +| +
T Consensus 224 --~~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~ 291 (333)
T PRK01966 224 --SVP---GEIVKPDDFYDYEAKYLDGSAELIIPADLSE-----ELTEKIRELAIKAFKALGCSGLARVDFFLTE-DG-E 291 (333)
T ss_pred --ccc---EEEecCCceEcHHHccCCCCceEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-C
Confidence 111 111111235555544322210 01222211 1235689999999999998 56679999974 33 6
Q ss_pred EEEEeccCCCCCCCccc
Q 019509 299 FYVIDINYFPGYGKMPD 315 (340)
Q Consensus 299 ~~ViEVN~fPg~~g~~~ 315 (340)
+||+|||..||++...-
T Consensus 292 ~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 292 IYLNEINTMPGFTPISM 308 (333)
T ss_pred EEEEEeeCCCCCCcccH
Confidence 99999999999986543
No 19
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=2e-19 Score=171.56 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=158.1
Q ss_pred HHHHHHHhCCCEEEEecCCC-CCC---CCCCccEEEEccCchhh-HHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHH
Q 019509 47 KLEILARNKGISFVAIDQNR-PLS---DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQ 120 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~-~l~---~q~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~ 120 (340)
...++.++.|++++.+|.+. .+. ....+|++|.=+..... ...++...+. -|++++ .+++++..|+||..+-+
T Consensus 26 ~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~ 104 (296)
T PRK14569 26 AVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKE 104 (296)
T ss_pred HHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHH
Confidence 46677788999999999763 211 13468988876543222 1446666654 467766 46799999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------CCCe
Q 019509 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------EPPM 194 (340)
Q Consensus 121 ~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------~~p~ 194 (340)
.|.+ +|||||++..+.. .. . ....++||+|+||..++ .|.++.++.+.++|... ..++
T Consensus 105 ~l~~-------~gIptp~~~~~~~-~~---~--~~~~~~~P~vVKP~~gg---ss~Gv~~v~~~~eL~~a~~~~~~~~~~ 168 (296)
T PRK14569 105 ILMH-------HRMPTPMAKFLTD-KL---V--AEDEISFPVAVKPSSGG---SSIATFKVKSIQELKHAYEEASKYGEV 168 (296)
T ss_pred HHHH-------CCCCCCCeEEEch-hh---h--hHhhcCCCEEEEeCCCC---CCcCeEEcCCHHHHHHHHHHHHhcCCE
Confidence 9997 4999999988752 11 1 23468999999998633 36899999999988642 2479
Q ss_pred EEEecccCCCeEEEEEEECCEEE-EEEeecCCCccchhhhccceeeecccccccccc-cCCCCCCCCCCCCCChhHHHHH
Q 019509 195 LLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS-ADDADLDPGIAELPPRPLLERL 272 (340)
Q Consensus 195 v~QEfI~h~G~~~KV~ViG~~v~-~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~l 272 (340)
++|||| .|++|.|.|+|+... .+...+.. .+|+|......... ..+..+.+ ...++++++
T Consensus 169 lvEefI--~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~k~~~~~~~~~P~~l~~-----~~~~~i~~~ 230 (296)
T PRK14569 169 MIEQWV--TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYESKYSGKSIYHSPSGLCE-----QKELEVRQL 230 (296)
T ss_pred EEEccc--ccEEEEEEEECCcCcceEEEecCC-----------CcCChhhccCCCcEEEeCCCCCH-----HHHHHHHHH
Confidence 999999 499999999998743 22222211 12222222111100 01111111 123568999
Q ss_pred HHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 273 ARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 273 A~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
|.++.++||+. +++||++.+. +| ++||+|||..||+.....+
T Consensus 231 a~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 231 AKKAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred HHHHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHH
Confidence 99999999975 6679999874 33 6999999999999865443
No 20
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=9.6e-20 Score=178.64 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=148.1
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeecChH-HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCC----
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---- 146 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp~-~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~---- 146 (340)
.+|++|.-+.+.... ..+|.+.+ .-|++.+.+. .+...|+||..+.+.|.+ +|||||++..+.+..
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle-~~giPy~Gs~~~asal~~DK~~tK~~l~~-------~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLK-VMDIPCVGAGILGSAISINKYFCKLLLKS-------FNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHH-HcCCCccCCCHHHHHHHHCHHHHHHHHHH-------cCCCCCCEEEEeccccccc
Confidence 589999888653221 35677765 4689999887 599999999999999997 499999988875321
Q ss_pred -CChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEE
Q 019509 147 -LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKV 218 (340)
Q Consensus 147 -~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v~~ 218 (340)
++..+. ....++||+|+||..+ || |.||.++.+.++|.. .+..+++||||. |+++.|.|+|+....
T Consensus 159 ~~~~~~~-~~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~ 232 (364)
T PRK14570 159 KEGIKKD-IKEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIK 232 (364)
T ss_pred hHHHHHH-HHHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCce
Confidence 111111 1246899999999853 33 578999999988765 256799999995 999999999985211
Q ss_pred EEeecCCCccchhhhcc-ceeeeccccccc--ccc---cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019509 219 VRRFSLPNVSKRELAKV-VSVFRFPRVSSA--AAS---ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 291 (340)
Q Consensus 219 ~~R~sl~~~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~ 291 (340)
+ +|. ++.... ..+|+|...+.. +.. ..++.+++. ..+.++++|.++.++||+. ++.||+++
T Consensus 233 v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e-----~~~~i~~~A~~~~~aLg~~G~~RvDf~l 300 (364)
T PRK14570 233 I----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTK-----HLLDIKEYAFLTYKNLELRGMARIDFLI 300 (364)
T ss_pred E----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 0 111 111111 134555443321 100 112222211 2357899999999999995 55699999
Q ss_pred ecCcCCeEEEEeccCCCCCCCcccc
Q 019509 292 EHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 292 ~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
+...| ++||+|||..||+.....+
T Consensus 301 ~~~~g-~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 301 EKDTG-LIYLNEINTIPGFTDISMF 324 (364)
T ss_pred ECCCC-cEEEEEeeCCCCCCcccHH
Confidence 74223 6999999999999876444
No 21
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=1.2e-18 Score=169.73 Aligned_cols=215 Identities=16% Similarity=0.166 Sum_probs=141.0
Q ss_pred CccEEEEccC---chhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCC-
Q 019509 73 PFDVVLHKLS---GMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 147 (340)
Q Consensus 73 ~~DvilhK~t---~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~- 147 (340)
.+|+++.=+. ... ..+|.+.+. .|++++ .++.++..|+||..+.+.|.+ +||++|+++.+.+...
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~-------~GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQ-------SGQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEEccccc
Confidence 3566554332 222 246777654 578887 458999999999999999997 4999999998853221
Q ss_pred -ChhhHH-HhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC----
Q 019509 148 -SIPDQV-FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---- 214 (340)
Q Consensus 148 -~~~~~l-~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~---- 214 (340)
...+.+ ....++||+|+||..++ .|.++.++.+.++|... +.++++||||. |++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~gg---sS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEGG---SSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeCccCC
Confidence 111111 12468999999998633 35899999999988652 46799999994 99999999973
Q ss_pred EEEEEEeecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEE
Q 019509 215 TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIR 291 (340)
Q Consensus 215 ~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~ 291 (340)
++... .+|-. +.....++|+|...+..+.. ..++.+++ ...++++++|.++.++||+. +.++|+++
T Consensus 233 ~~~~~---~l~~~---ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPAT---EIVPGGEFFDFESKYKQGGSEEITPARISD-----QEMKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---ecccE---EEecCCCccCHHHccCCCCeEEEECCCCCH-----HHHHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 01100 11111234455443322211 01222211 12346899999999999987 55799999
Q ss_pred ecCcCCeEEEEeccCCCCCCCcccc
Q 019509 292 EHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 292 ~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
++ + .+||+|||..||+.....+
T Consensus 302 ~~--~-~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 302 VD--G-EPHILETNTLPGMTETSLI 323 (347)
T ss_pred EC--C-cEEEEeeeCCCCCCcccHH
Confidence 63 2 6899999999999976444
No 22
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.83 E-value=8.7e-19 Score=170.50 Aligned_cols=212 Identities=19% Similarity=0.231 Sum_probs=144.4
Q ss_pred CccEEEEccCchhh-HHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChh
Q 019509 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (340)
Q Consensus 73 ~~DvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~ 150 (340)
.+|++|.-+.+... -..+|.+.+. .|++.+ .++.+...|+||..+.+.|+++ |||+|++.++... +..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~-~~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTAD-ERP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECC-chh-
Confidence 47988887765321 1357777754 678876 5688999999999999999974 9999999988632 221
Q ss_pred hHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEE--EE--E
Q 019509 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI--KV--V 219 (340)
Q Consensus 151 ~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v--~~--~ 219 (340)
....++||+|+||..++ | |.++.++.+.++|.. .+..+++||||+ |+++.|.|+|+.- .+ +
T Consensus 160 ---~~~~l~~P~iVKP~~~g-s--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~~ 231 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSG-S--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGEV 231 (343)
T ss_pred ---hhhhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceecc
Confidence 12468999999998643 3 689999999998864 256799999995 9999999998741 11 1
Q ss_pred EeecCCCccchhhhccceeeeccccccccc-ccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCC-cEeEEEEEEecCc
Q 019509 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAA-SADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIREHGM 295 (340)
Q Consensus 220 ~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~ 295 (340)
.+.. ...++|+++....... .......-| .+++ ..+.++++|.++.++||+ +++.+|++.+. +
T Consensus 232 ~~i~----------~~~~~~~~~~k~~~~~g~~~~~~~~P--a~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~ 298 (343)
T PRK14568 232 DQIR----------LSHGFFRIHQENEPEKGSENSTIIVP--ADISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-D 298 (343)
T ss_pred eEEe----------cCCCccchhhhhccccCCCCeeEEeC--CCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-C
Confidence 1111 1123455443221100 000000111 1122 235689999999999999 67789999974 3
Q ss_pred CCeEEEEeccCCCCCCCcccc
Q 019509 296 RDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 296 g~~~~ViEVN~fPg~~g~~~~ 316 (340)
| .+||+|||..||+.....+
T Consensus 299 g-~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 299 G-TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred C-CEEEEEeeCCCCCCccCHH
Confidence 4 6899999999999865433
No 23
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.82 E-value=1.9e-19 Score=193.68 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=152.3
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCC--CCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSD--QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQD 121 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~--q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~ 121 (340)
++..++++|.++||.+..+|-.. +.. +|..--++ ..+ .--.|+..++..+.||..+.++
T Consensus 160 st~~i~~~a~~rgip~~~l~~~~-~~qlg~g~~~~~~-~~~-----------------~t~~~s~ia~~ia~DK~~tk~l 220 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAGS-LVQLGYGSRQKRI-QAT-----------------ETDRTSAIAVEIACDKDLTKEI 220 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCCC-EEEecCCCEEEEE-Eee-----------------cCCCCcHHHHHHHcCHHHHHHH
Confidence 45678899999999998887433 222 12111111 111 1223678899999999999999
Q ss_pred HHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE-EeChhhhhcc-------CCC
Q 019509 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSEL-------EPP 193 (340)
Q Consensus 122 L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p 193 (340)
|.+ +|||+|++.++. +.+++.+. ...++||+|+||.. |+ .+.+|.+ +.++++|.+. ..+
T Consensus 221 L~~-------~GIpvP~~~~~~-s~~ea~~~--~~~ig~PvVVKP~~--g~-~G~GV~l~v~s~~el~~a~~~a~~~~~~ 287 (864)
T TIGR02068 221 LSD-------AGVPVPEGTVVQ-SAEDAWEA--AQDLGYPVVIKPYD--GN-HGRGVTINILTRDEIESAYEAAVEESSG 287 (864)
T ss_pred HHH-------cCcCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEECC--CC-CccCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 997 499999999885 33333332 24579999999997 44 4688998 8999887642 467
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhc--------cc----e-----------------------e
Q 019509 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----S-----------------------V 238 (340)
Q Consensus 194 ~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~--------~~----~-----------------------~ 238 (340)
+++|+||+ |++|||+|+|++++++.++-.+++..+...+ |. | -
T Consensus 288 vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g 365 (864)
T TIGR02068 288 VIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQG 365 (864)
T ss_pred EEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcC
Confidence 99999995 9999999999999987666555543211110 00 0 0
Q ss_pred eecccccccc---------cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCc----CCeEEEEecc
Q 019509 239 FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGM----RDVFYVIDIN 305 (340)
Q Consensus 239 ~~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~----g~~~~ViEVN 305 (340)
++.+++...| +.+.++.......++ .+...++|.++++++|++++|||++.++-+ +.+..|||||
T Consensus 366 ~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i--~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN 443 (864)
T TIGR02068 366 LTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEI--HPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVN 443 (864)
T ss_pred CCccccCCCCCEEEEeccccccCCCceEeccccc--CHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEc
Confidence 0111111111 011122111101122 345899999999999999999999985311 1235899999
Q ss_pred CCCCCCCc
Q 019509 306 YFPGYGKM 313 (340)
Q Consensus 306 ~fPg~~g~ 313 (340)
..||+...
T Consensus 444 ~~p~~~~h 451 (864)
T TIGR02068 444 AAPGLRMH 451 (864)
T ss_pred CCcchhhc
Confidence 99998743
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.79 E-value=1.1e-17 Score=175.28 Aligned_cols=238 Identities=13% Similarity=0.186 Sum_probs=153.2
Q ss_pred ccccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHH
Q 019509 41 KSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQ 120 (340)
Q Consensus 41 ~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~ 120 (340)
-.+++++|++.|-++| .+..+|....+. +++.... ++|++ ...+--.|+..+...|.||..+-+
T Consensus 418 ~~~stQ~Li~~Ai~rG-~v~vlD~~~~~~----------~L~~g~~----~~~v~-~~s~ts~tS~ia~~i~~DK~~TK~ 481 (737)
T TIGR01435 418 MELSTQWKLFDVIQKG-KVEILDEAEQFL----------RLQKGDH----IEYVK-NANMTSKDNYVSPLIMENKVVTKK 481 (737)
T ss_pred ccHhHHHHHHHHHHCC-CEEEeCCCCCee----------EeecCCc----ceEEe-cceecCCccHHHHHHhcCHHHHHH
Confidence 3567789999999999 888988765333 2221100 11111 122344588999999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCC-CCcEEEecCCCCCCCcceeeEEEeC---hhhhhc-------
Q 019509 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE------- 189 (340)
Q Consensus 121 ~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~~PvVvKP~~a~Gs~~sh~m~iv~~---~~~L~~------- 189 (340)
+|.+ +|||||++.++.+ .....+. ...+ +||+||||.. |+ .|.|+.++.+ .+++.+
T Consensus 482 iL~~-------aGIPVP~g~~~~~-~~~a~~~--~~~~~g~PVVVKP~~--g~-~G~GVsi~~~~~~~eel~~Al~~A~~ 548 (737)
T TIGR01435 482 VLAE-------AGFRVPFGDEFSS-QALALEA--FSLFENKAIVVKPKS--TN-YGLGITIFKNGFTLEDFQEALNIAFS 548 (737)
T ss_pred HHHH-------cCcCCCCEEEECC-HHHHHHH--HHHhcCCCEEEeeCC--CC-CcCCeEEecCcCCHHHHHHHHHHHHh
Confidence 9997 4999999998853 2222222 1233 7999999987 33 4689999877 454432
Q ss_pred cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhc--------cc----ee-------------------
Q 019509 190 LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----SV------------------- 238 (340)
Q Consensus 190 l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~--------~~----~~------------------- 238 (340)
....+++||||. |++|||+|||+++.++.++..+++..++..+ |. |.
T Consensus 549 ~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~ 626 (737)
T TIGR01435 549 EDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLK 626 (737)
T ss_pred cCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHH
Confidence 245799999995 9999999999999877666556664322221 10 00
Q ss_pred ---eecccccccc---------cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcC------CeEE
Q 019509 239 ---FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMR------DVFY 300 (340)
Q Consensus 239 ---~~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g------~~~~ 300 (340)
|++.+|...| +.++++... +.++ ...+..+++|.++++++|+.++|||+|.++-+. ..+.
T Consensus 627 ~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~i-DvTd-~ihp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~ 704 (737)
T TIGR01435 627 EQGLTIDSIPKKEQIVYLRENSNVSTGGDSI-DMTD-EMDDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWG 704 (737)
T ss_pred HcCCCccccCCCCCEEEEcCCCcccCCCceE-eccc-ccCHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceE
Confidence 0111111100 001111110 1111 123457999999999999999999999864211 2378
Q ss_pred EEeccCCCCCC
Q 019509 301 VIDINYFPGYG 311 (340)
Q Consensus 301 ViEVN~fPg~~ 311 (340)
|||||..||+.
T Consensus 705 iiEvN~~P~l~ 715 (737)
T TIGR01435 705 VIEANFNPAMH 715 (737)
T ss_pred EEEEcCCcchh
Confidence 99999999965
No 25
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.79 E-value=3.7e-19 Score=161.23 Aligned_cols=163 Identities=21% Similarity=0.330 Sum_probs=108.5
Q ss_pred CccccCcEEEEecCCCChhhH--HHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccC
Q 019509 132 GKVRVPRQMVITKDSLSIPDQ--VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNH 202 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~--l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h 202 (340)
.||+||+++++.... ..... -....++||+|+||.. .|| |.|+.++++.++|.. ++.++++||||
T Consensus 5 ~gI~tp~~~~~~~~~-~~~~~~~~~~~~l~~P~~VKP~~-~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI-- 78 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNE-DDSDSIEKILEDLGFPLFVKPAS-EGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI-- 78 (203)
T ss_dssp TT-BB-SEEEEETTS-HHHHHHHHHHHHHSSSEEEEESS-TST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----
T ss_pred cCCCCCCEEEEeccc-ccchhHHHHHhhcCCCEEEEECC-CCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--
Confidence 599999999997432 21111 1235689999999984 555 678999999988764 35789999999
Q ss_pred CCeEEEEEEECCE---EEEEEeecCCCccchhhhccceeeeccccccc--c--cccCCCCCCCCCCCCCChhHHHHHHHH
Q 019509 203 GGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA--A--ASADDADLDPGIAELPPRPLLERLARE 275 (340)
Q Consensus 203 ~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~lA~~ 275 (340)
+|++|.|.|+|+. +.-.. ++....++|+|...+.. . ....++.+++ ...+.++++|.+
T Consensus 79 ~G~E~tv~vl~~~~~~~~~~~----------ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~-----~~~~~i~~~a~~ 143 (203)
T PF07478_consen 79 SGREFTVGVLGNGEPRVLPPV----------EIVFPSEFYDYEAKYQPADSETEYIIPADLSE-----ELQEKIKEIAKK 143 (203)
T ss_dssp SSEEEEEEEEESSSTEEEEEE----------EEEESSSEEEHHHHHSGCCSCEEEESS-SS-H-----HHHHHHHHHHHH
T ss_pred cccceEEEEEecCCcccCceE----------EEEcCCCceehhheeccCCCceEEEecCCCCH-----HHHHHHHHHHHH
Confidence 6999999999954 32222 22222356777665532 1 0112222221 124578999999
Q ss_pred HHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCccccH
Q 019509 276 LRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDYE 317 (340)
Q Consensus 276 ~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~ 317 (340)
+.++||+.-++ ||+..+. +| ++|++|||..||+.....++
T Consensus 144 a~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 144 AFKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp HHHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHH
T ss_pred HHHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHH
Confidence 99999998777 9999975 34 79999999999998765554
No 26
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.78 E-value=1e-17 Score=160.61 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=121.4
Q ss_pred cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCC-cEEEecCCCCCCCcceeeEEE
Q 019509 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLA 181 (340)
Q Consensus 103 iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-PvVvKP~~a~Gs~~sh~m~iv 181 (340)
.|+-+..-.|-||+.+.++|++ +|||+|+|.++.....+ .+.+...--++ |+|+||+. || +++++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQ--GS-GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECC--CC-CccCeEEE
Confidence 3777888899999999999987 59999999988633322 22222221256 69999998 76 78999999
Q ss_pred eChhhhh--------------------------ccCCC--eEEEecccCC-----------CeEEEEEEECCEEEEE-Ee
Q 019509 182 YDRFSLS--------------------------ELEPP--MLLQEFVNHG-----------GILFKIYIIGETIKVV-RR 221 (340)
Q Consensus 182 ~~~~~L~--------------------------~l~~p--~v~QEfI~h~-----------G~~~KV~ViG~~v~~~-~R 221 (340)
.+.++.. .+..+ .++|||+... ..|+||+|+|+++.++ .|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 7753311 12222 5666776222 2699999999998765 44
Q ss_pred ecCCCccchhhhcc---ceee---eccc--ccccccccCCCCCCCC------CCCCCChhHHHHHHHHHHHHhCCcEeEE
Q 019509 222 FSLPNVSKRELAKV---VSVF---RFPR--VSSAAASADDADLDPG------IAELPPRPLLERLARELRHRLGLRLFNI 287 (340)
Q Consensus 222 ~sl~~~~~~~~~~~---~~~~---~~~~--~~~~~~~~~~~~~~~~------~~~~p~~~~~~~lA~~~~~~lGl~l~Gv 287 (340)
.+.. .++|++| .|.. +..+ +...+.........|. ..+.|..+++.++|.++++++|+.++|+
T Consensus 175 ~~~~---~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~Gv 251 (317)
T TIGR02291 175 LPTR---ASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGV 251 (317)
T ss_pred ccCc---cCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEE
Confidence 4321 0123322 1111 0000 0000000000000110 1223445679999999999999999999
Q ss_pred EEEEecCcCCeEEEEeccCCCCCC
Q 019509 288 DMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 288 Dvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
|++++.+ ++++|+|||..|||+
T Consensus 252 Dii~~~~--~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 252 DMVLDKE--EGPLVLELNARPGLA 273 (317)
T ss_pred EEEEeCC--CCEEEEEeCCCCCCC
Confidence 9999743 258999999999998
No 27
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.73 E-value=5.7e-16 Score=166.29 Aligned_cols=246 Identities=14% Similarity=0.101 Sum_probs=162.8
Q ss_pred HHHHHHHhCCCEEEEecCCCC--C--C----------------------CCCCccEEEEccCchhh-HHHHHHHHHhCCC
Q 019509 47 KLEILARNKGISFVAIDQNRP--L--S----------------------DQGPFDVVLHKLSGMEW-CKIIEDYRQKHPE 99 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~--l--~----------------------~q~~~DvilhK~t~~~~-~~~l~~~~~~~p~ 99 (340)
...++-++.|+++.+||.++. . . ....+|++|.=+.+... -..+|.+.+. -|
T Consensus 474 ~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~~le~-~g 552 (809)
T PRK14573 474 NIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLEI-IG 552 (809)
T ss_pred HHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCChHHHHHHHH-cC
Confidence 355556677999999887652 0 0 00247888877755321 1357777754 46
Q ss_pred eeecC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCC--CChhhHH--HhhCCCCcEEEecCCCCCCCc
Q 019509 100 VTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS--LSIPDQV--FEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 100 v~ViD-p~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~--~~~~~~l--~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
++.+- ++.+...|+||..+-+.|.+ .|||||++..+.... ......+ ....++||+|+||..+ ||
T Consensus 553 ipy~Gs~~~asal~~DK~~~K~~l~~-------~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~-Gs-- 622 (809)
T PRK14573 553 KPYTGPSLAFSAIAMDKVLTKRFASD-------VGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHL-GS-- 622 (809)
T ss_pred CCeeCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCCC-CC--
Confidence 77654 78889999999999999997 499999999885311 0111101 2346899999999864 43
Q ss_pred ceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeeccccccc
Q 019509 175 SHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (340)
Q Consensus 175 sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
|.|+.++.+.++|.+ .+.++++||||. +|+++.|.|+|+.-.... .+ +. .+.....++|+|...+..
T Consensus 623 S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~-~~---~e~~~~~~f~dy~~Ky~~ 696 (809)
T PRK14573 623 SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA-GP---HERRGSGGFIDYQEKYGL 696 (809)
T ss_pred CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec-cc---eEEccCCCeeCchhcccC
Confidence 579999999988764 356899999986 579999999998621100 01 11 011112346676655421
Q ss_pred ccc-----cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 248 AAS-----ADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 248 ~~~-----~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
... ..++.+++ ...++++++|.++.++||+.-++ ||++++.+ | .+||+|||..||+.....+
T Consensus 697 ~g~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g-~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 697 SGKSSAQIVFDLDLSK-----ESQEQVLELAERIYRLLQGKGSCRIDFFLDEE-G-NFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred CCCCceEEecCCCCCH-----HHHHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-CEEEEEeeCCCCCCcccHH
Confidence 100 01122211 12357899999999999988775 99999753 3 6999999999999875333
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.71 E-value=2.4e-15 Score=146.56 Aligned_cols=227 Identities=18% Similarity=0.211 Sum_probs=145.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCC---------------------CCccEEEEccCchhhHHHHHHHHHhCCCeeecCh
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQ---------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q---------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp 105 (340)
.|..+|+++|+++..+|.+..-... ..+|+|.. .........+..+. + -|+++..+
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~-e~e~i~~~~l~~l~-~-~g~~~~p~ 89 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF-EFEHVDVEALEKLE-A-RGVKLFPS 89 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe-CcCcCCHHHHHHHH-h-CCCeECCC
Confidence 5888999999999999986411110 11233311 11111112233333 2 35678899
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChh
Q 019509 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (340)
Q Consensus 106 ~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~ 185 (340)
+++++.++||..+-+.|.++ |||+|++..+. +.+++.+. ...++||+|+||..+ +.+|.++.++.+.+
T Consensus 90 ~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~~--g~~g~Gv~~v~~~~ 157 (352)
T TIGR01161 90 PDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIK-DEEELDAA--LQELGFPVVLKARTG--GYDGRGQYRIRNEA 157 (352)
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeC-CHHHHHHH--HHHcCCCEEEEeCCC--CCCCCCEEEECCHH
Confidence 99999999999999999874 99999999985 33222222 246899999999863 22468999999998
Q ss_pred hhhcc-----CCCeEEEecccCCCeEEEEEEEC---CEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCC
Q 019509 186 SLSEL-----EPPMLLQEFVNHGGILFKIYIIG---ETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 257 (340)
Q Consensus 186 ~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG---~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (340)
++... ..++++||||+ .|..+.|.++. +++.++ |-. +.....+...++. .+..++
T Consensus 158 el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~-----~~~---~~~~~~g~~~~~~--------~p~~~~ 220 (352)
T TIGR01161 158 DLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFY-----PVV---ENIHQDGILRYVV--------APAAVP 220 (352)
T ss_pred HHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEE-----CCc---ccEEeCCEEEEEE--------CCCCCC
Confidence 88653 34899999996 36888887763 233321 110 0000111111100 111111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 258 PGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 258 ~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
+ ...++++++|.++.++||+ +++++|++++. +| .+||+|||.-||=.|
T Consensus 221 ~-----~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 221 D-----AIQARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNSG 269 (352)
T ss_pred H-----HHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCcC
Confidence 1 1135689999999999998 57889999874 33 699999999998443
No 29
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.71 E-value=1.3e-15 Score=149.51 Aligned_cols=228 Identities=12% Similarity=0.176 Sum_probs=146.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCC-----------------------CCCccEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 47 KLEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~-----------------------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
.++.+|+++|+++..+|.+..-.. ...+|+|+.=... .....+..+. ..|+++.
T Consensus 13 ~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~l~--~~g~~~~ 89 (380)
T TIGR01142 13 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFELE--KEGYFVV 89 (380)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHHHH--hcCCeeC
Confidence 477789999999999988641110 1135666542222 1222333332 2457778
Q ss_pred ChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEe
Q 019509 104 DPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~ 182 (340)
.++++++.++||..+.+.+ .+ +|||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.++.++.
T Consensus 90 ~~~~~~~~~~dK~~~~~~~~~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~VvKP~~--g~-~s~gv~~v~ 156 (380)
T TIGR01142 90 PNARATKLTMNREGIRRLAAEE-------LGLPTSRYMFAD-SLDELREA--VEKIGYPCVVKPVM--SS-SGKGQSVVR 156 (380)
T ss_pred CCHHHHHHhhCHHHHHHHHHHH-------CCCCCCCceEeC-CHHHHHHH--HHHcCCCEEEEECC--Cc-CCCCeEEEC
Confidence 8999999999999888875 55 499999999885 33223222 24689999999986 43 568999999
Q ss_pred Chhhhhcc-----------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEeecCCCccchhhhccceeeecccccccc
Q 019509 183 DRFSLSEL-----------EPPMLLQEFVNHGGILFKIYII---GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 183 ~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~Vi---G~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
+.++|... ..++++||||+ .+.++.|.++ ++++... ....+. ...+.+..
T Consensus 157 ~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~------~~~~~~~~------- 220 (380)
T TIGR01142 157 GPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHR------QIDGDYHE------- 220 (380)
T ss_pred CHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceE------EeCCeeEE-------
Confidence 99887542 35799999996 3678888777 3332221 111110 00111100
Q ss_pred cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCccc
Q 019509 249 ASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 315 (340)
...+..+++ ...++++++|.++.++||. +++++|++.+.+ ++||+|||.-||-.+...
T Consensus 221 -~~~p~~l~~-----~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 221 -SWQPQEMSE-----KALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred -EECCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEE
Confidence 001111111 1135578999999999998 677899998742 599999999999765543
No 30
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.8e-15 Score=142.66 Aligned_cols=250 Identities=18% Similarity=0.169 Sum_probs=173.7
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCC---CC-------CCccEEEEccCchhh-HHHHHHHHHhCCCeeecChHHHHHHh
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLS---DQ-------GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPPDAIKHL 112 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~---~q-------~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp~~si~~~ 112 (340)
+-..+.++-+..|.++..+|...... .. ..+|++++.+.+... -..+|.|.+..-==+|.-|..+-..+
T Consensus 22 sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~ 101 (317)
T COG1181 22 SAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGA 101 (317)
T ss_pred cHHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhc
Confidence 34456777777999999999876333 12 578999888876421 13466666432212778899999999
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEecCC-CChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc--
Q 019509 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-- 189 (340)
Q Consensus 113 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-- 189 (340)
+||..+-.++.. .+++++....+.++. ....-.-...+++||++|||.. -|| |-++..+.+.+++..
T Consensus 102 mdk~~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~-~gS--Svg~~~v~~~~d~~~~~ 171 (317)
T COG1181 102 MDKIVTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR-EGS--SVGRSPVNVEGDLQSAL 171 (317)
T ss_pred ccHHHHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCC-ccc--eeeEEEeeeccchHHHH
Confidence 999887777665 499999999886432 1111111346899999999974 456 678999999887764
Q ss_pred -----cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhcc-ceeeecccccccccc---cCCCCCCCCC
Q 019509 190 -----LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV-VSVFRFPRVSSAAAS---ADDADLDPGI 260 (340)
Q Consensus 190 -----l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~ 260 (340)
.+..+++|+|++ |+.+.|-++|+.. ... .++ .+++... ..+|+|...+..+.. ..++.+++
T Consensus 172 e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~--~l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~-- 241 (317)
T COG1181 172 ELAFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQ--ALP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTD-- 241 (317)
T ss_pred HHHHHhCCceeeccCCC--cceEEEEecCCcc-cce--ecC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCH--
Confidence 367899999997 9999999999975 111 111 1122222 467888776543111 11111111
Q ss_pred CCCCChhHHHHHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCccccH
Q 019509 261 AELPPRPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYE 317 (340)
Q Consensus 261 ~~~p~~~~~~~lA~~~~~~lG-l~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~ 317 (340)
...++++++|.++.++|| ..+.++|++.+.++| ++|++|||..|||..+.-|+
T Consensus 242 ---~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 242 ---EIHEEIKELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccch
Confidence 124578999999999999 999999999987333 79999999999988776663
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.67 E-value=5.8e-15 Score=145.25 Aligned_cols=226 Identities=17% Similarity=0.187 Sum_probs=147.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCC---------------------CCccEEEEccCchhhHHHHHHHHHhCCCeeecCh
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQ---------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q---------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp 105 (340)
.|..+|+++|+++..+|++..-.-. ..+|+|..-. .......+ ++++++ ..+..+
T Consensus 16 ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~-e~i~~~~l-~~l~~~--~~~~p~ 91 (372)
T PRK06019 16 MLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEF-ENVPAEAL-DALAAR--VPVPPG 91 (372)
T ss_pred HHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCc-CCCCHHHH-HHHhcC--CeeCcC
Confidence 5788899999999999986421110 1244432111 11112223 334444 467799
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChh
Q 019509 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (340)
Q Consensus 106 ~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~ 185 (340)
++++..++||..+-+.|.++ |||+|++..+. +.+++.+. ...++||+|+||.. |+..|+++.++.+.+
T Consensus 92 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~-s~~~l~~~--~~~~g~P~vlKp~~--~g~~g~Gv~~v~~~~ 159 (372)
T PRK06019 92 PDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVD-SAEDLEAA--LADLGLPAVLKTRR--GGYDGKGQWVIRSAE 159 (372)
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeC-CHHHHHHH--HHHcCCcEEEEeCC--CCcCCCCeEEECCHH
Confidence 99999999999999999974 99999999985 33333222 24689999999986 322579999999999
Q ss_pred hhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCC
Q 019509 186 SLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 257 (340)
Q Consensus 186 ~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (340)
+|... ..++++||||+ .++.+.|.++++ ++.++. ...+. ...+.+.++. .+..++
T Consensus 160 el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~p--~~e~~------~~~gi~~~~~--------~pa~~~ 222 (372)
T PRK06019 160 DLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFYP--LVENV------HRNGILRTSI--------APARIS 222 (372)
T ss_pred HHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEeC--CcccE------EeCCEEEEEE--------CCCCCC
Confidence 88653 35899999997 378888887754 233211 00111 1112222111 111121
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 258 PGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 258 ~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
+ ...++++++|.++.++||.. ++++|++++. +| ++||+|||.-|+=.|
T Consensus 223 ~-----~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg 271 (372)
T PRK06019 223 A-----ELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSG 271 (372)
T ss_pred H-----HHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCcc
Confidence 1 12456899999999999975 7789999864 33 699999999997554
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.66 E-value=1.4e-15 Score=133.16 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=99.9
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc
Q 019509 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 190 (340)
Q Consensus 111 ~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l 190 (340)
+|.||..|.+++.++ ||++|+++.+. +.+++.+. ...++||+|+||..+. +|.+|.++.+.++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~-~~~~~~~~--~~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVD-SEEELRAF--AEDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEEC-SHHHHHHH--HHHSSSSEEEEESS-S---TTTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHH
Confidence 579999999999975 99999999986 33333332 2356799999999854 46899999999998764
Q ss_pred -----------CCCeEEEecccCCCeEE--EEEEECCEEEE--EEeecCCCccchhhhccceeeecccccccccccCCCC
Q 019509 191 -----------EPPMLLQEFVNHGGILF--KIYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD 255 (340)
Q Consensus 191 -----------~~p~v~QEfI~h~G~~~--KV~ViG~~v~~--~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (340)
..++++||||+ |.++ .+++.++++++ +.++.. ... ..... ........ .
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~---------~-- 131 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVR-QSP-GHFSG-GVPTGYSV---------P-- 131 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEE-EET-CCCSS-SEEEEEEE---------S--
T ss_pred HHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEec-ccc-ccccc-ceeeeeec---------c--
Confidence 35799999997 5555 66777888643 222211 000 00000 00000000 0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 256 LDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 256 ~~~~~~~~p~~~~~~~lA~~~~~~lGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. +.+..+.+++++.++.+++|. ..+++|++.+.+ | ++++||||.-+|
T Consensus 132 ~-----~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 132 S-----EPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp -------CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred c-----ccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 0 011126689999999999998 888999999874 4 799999998765
No 33
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.64 E-value=2.1e-14 Score=137.85 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=116.0
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 101 ~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
++.++++++..+.||..+.+.|.++ |||+|+++.+. +.++..+.+....++||+|+||..+. .|.++.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~~~~~~~~P~viKP~~g~---~s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPE-SLEDFKAALAKGELQFPLFVKPRDGS---ASIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEccc-CHHHHHhhhhcccCCCCEEEEeCCCC---CccCeEE
Confidence 5678999999999999999999974 89999999875 32222221123468999999998743 4689999
Q ss_pred EeChhhhhcc---CCCeEEEecccCCCeEEEEEEE---CCEEEE-EEeecCCCccchhhhccceeeecccccccccccCC
Q 019509 181 AYDRFSLSEL---EPPMLLQEFVNHGGILFKIYII---GETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 253 (340)
Q Consensus 181 v~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~Vi---G~~v~~-~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (340)
+.+.+++.+. ..++++|||| .|..+.+-++ ++++.+ ..++.+.. . .|. .. .
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~-~-------~g~-----------~~-~ 224 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV-R-------AGE-----------TS-K 224 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee-c-------CCc-----------ee-E
Confidence 9999988653 3589999999 5777765444 445443 33322110 0 000 00 0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 254 ADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+. ..+.+++.+++.+++++||+ ++++||++++. | ++++||||.-++
T Consensus 225 ~~-------~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 225 GV-------TVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred EE-------EcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 01235689999999999999 58889999975 3 699999997443
No 34
>PRK07206 hypothetical protein; Provisional
Probab=99.64 E-value=2.2e-14 Score=142.51 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=146.0
Q ss_pred HHHHHHHhCCCEEEEecCCCCCC----------C------------------CCCccEEEEccCchhhHHHHHHHHHhCC
Q 019509 47 KLEILARNKGISFVAIDQNRPLS----------D------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~----------~------------------q~~~DvilhK~t~~~~~~~l~~~~~~~p 98 (340)
.+.++++++|++++.++.+.... . .-.+|+|++ .+ +..... .+.++++-
T Consensus 16 ~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~-~~-e~~~~~-~a~l~~~l 92 (416)
T PRK07206 16 FLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA-GA-ESGVEL-ADRLAEIL 92 (416)
T ss_pred HHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE-CC-CccHHH-HHHHHHhc
Confidence 57888999999999887542110 0 123466665 12 222222 23334456
Q ss_pred CeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCC---cEEEecCCCCCCCcc
Q 019509 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL---PLVAKPLVVDGSAKS 175 (340)
Q Consensus 99 ~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~---PvVvKP~~a~Gs~~s 175 (340)
+++.-++++++..++||..|.+.|.++ ||++|++..+. +.++..+.+ ..++| |+|+||..+. +|
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~--~~~g~~~~P~VvKP~~g~---gs 159 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWL--RENGLIDRPVVIKPLESA---GS 159 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHH--HhcCCCCCCEEEeCCCCC---CC
Confidence 666679999999999999999999974 99999999885 333333322 34566 9999998744 46
Q ss_pred eeeEEEeChhhhhcc--------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCccchhhhccce
Q 019509 176 HELFLAYDRFSLSEL--------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKRELAKVVS 237 (340)
Q Consensus 176 h~m~iv~~~~~L~~l--------------~~p~v~QEfI~h~G~~~KV--~ViG~~v~~--~~R~sl~~~~~~~~~~~~~ 237 (340)
.++.++.+.++|.+. ...+++||||. |..|-| ++.++++.+ +.+..-.... .+
T Consensus 160 ~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-------~~ 230 (416)
T PRK07206 160 DGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-------SG 230 (416)
T ss_pred CCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC-------CC
Confidence 899999999887542 24799999995 777765 444666443 2322111110 01
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
.+.+.. ..+-|. ..+..+++.+++.++.++||+ +.+.+|++.+.+ ++++||||.-||=...+
T Consensus 231 ~~~~~~----------~~~~p~--~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~---g~~liEin~R~~G~~~~ 294 (416)
T PRK07206 231 STVYDY----------DEFLDY--SEPEYQELVDYTKQALDALGIKNGPAHAEVMLTAD---GPRLIEIGARLDGGLHP 294 (416)
T ss_pred Cceecc----------cccCCc--cHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCC---CCEEEEECCccCCCCcc
Confidence 000000 000010 011245688999999999998 577899998642 47899999999844444
No 35
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.62 E-value=8.8e-14 Score=143.95 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=156.4
Q ss_pred CCcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCC--C-------------------CCccEEEEccCch
Q 019509 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSD--Q-------------------GPFDVVLHKLSGM 84 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~--q-------------------~~~DvilhK~t~~ 84 (340)
....+||+...- ..-..+..+|+++|+++..+|.+..-.. . ...|+|..-.. .
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e-~ 93 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE-H 93 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC-C
Confidence 456788888876 2223588899999999999998642110 0 01333321111 0
Q ss_pred hhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEE
Q 019509 85 EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVA 164 (340)
Q Consensus 85 ~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVv 164 (340)
.....+ +..+. -+++|..+++++..|+||..+-+.|.+ +|||+|++..+. +.+++.+ ....++||+|+
T Consensus 94 v~~~~l-~~le~-~gi~v~ps~~al~i~~DK~~~K~~l~~-------~GIptp~~~~v~-~~~el~~--~~~~ig~P~Vv 161 (577)
T PLN02948 94 VDVDTL-EALEK-QGVDVQPKSSTIRIIQDKYAQKVHFSK-------HGIPLPEFMEID-DLESAEK--AGDLFGYPLML 161 (577)
T ss_pred CCHHHH-HHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeEEeC-CHHHHHH--HHHhcCCcEEE
Confidence 112233 33333 356677889999999999999999987 499999999885 3322222 23468999999
Q ss_pred ecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhc
Q 019509 165 KPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAK 234 (340)
Q Consensus 165 KP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~ 234 (340)
||.. |+.+|.++.++.++++|... ..++++|+||+ ..+.+-|.|+++ .+.++ |.. +...
T Consensus 162 KP~~--ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~~-----p~~---E~~~ 230 (577)
T PLN02948 162 KSRR--LAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRCY-----PVV---ETIH 230 (577)
T ss_pred EeCC--CCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEEe-----cCc---ccEE
Confidence 9986 33357899999999887542 35899999995 248888888853 23321 211 1011
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 235 VVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
..+.+.+. ..++.+++ ...++++++|.++.++||.. ++.+|++++.+ | .+||+|||.-||..|
T Consensus 231 ~~~~~~~~--------~~Pa~l~~-----~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~d-G-~v~v~EInpRpg~sG 294 (577)
T PLN02948 231 KDNICHVV--------EAPANVPW-----KVAKLATDVAEKAVGSLEGAGVFGVELFLLKD-G-QILLNEVAPRPHNSG 294 (577)
T ss_pred ECCeeEEE--------EECCCCCH-----HHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCC-C-cEEEEEEeCCCCCCC
Confidence 11111110 01222221 12456899999999999865 45699999753 3 689999999999655
No 36
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.62 E-value=2.8e-14 Score=157.15 Aligned_cols=230 Identities=18% Similarity=0.272 Sum_probs=147.4
Q ss_pred cccchHHHHHHHhCCCEEEEecCCCCC-C------C-----------------CCCccEEEEccCchhhHHHHHHHHHhC
Q 019509 42 SFLQPKLEILARNKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~id~~~~l-~------~-----------------q~~~DvilhK~t~~~~~~~l~~~~~~~ 97 (340)
.+....++++++++|++++.+|.+-.. . + ....|.|+.-........ +....++
T Consensus 574 dy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~~-la~~le~- 651 (1066)
T PRK05294 574 DYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPLK-LAKALEA- 651 (1066)
T ss_pred chhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHHH-HHHHHHH-
Confidence 445557899999999999999875421 1 0 123566666655443332 2223333
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .+++++..|.||..+.+.|.++ |||+|++..+. +.++..+. ...++||+|+||..+. +|.
T Consensus 652 ~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~-s~ee~~~~--~~~igyPvvVKP~~~~---Gg~ 718 (1066)
T PRK05294 652 AGVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTAT-SVEEALEV--AEEIGYPVLVRPSYVL---GGR 718 (1066)
T ss_pred CCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEEC-CHHHHHHH--HHhcCCCeEEEeCCCC---CCC
Confidence 467665 6889999999999999999974 99999999885 33233332 2468999999998743 568
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCC-CeEEEEEEECCEEEE--EEee-cCCCccchhhhccceeeeccc
Q 019509 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRF-SLPNVSKRELAKVVSVFRFPR 243 (340)
Q Consensus 177 ~m~iv~~~~~L~~l---------~~p~v~QEfI~h~-G~~~KV~ViG~~v~~--~~R~-sl~~~~~~~~~~~~~~~~~~~ 243 (340)
+|.++.|.++|..+ ..|+++||||... ...+-+++-|+.+.+ .+++ ....+..++ ....+
T Consensus 719 Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~~~-- 791 (1066)
T PRK05294 719 AMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SACSL-- 791 (1066)
T ss_pred cEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcEEe--
Confidence 99999999988642 4689999999633 223344443544433 1221 100000000 00000
Q ss_pred ccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 244 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
....+++ ...+.++++|.+++++||+ +++++|+++++ +++||||||.-|+
T Consensus 792 --------p~~~l~~-----~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~---~~~yViEiNpR~s 842 (1066)
T PRK05294 792 --------PPQTLSE-----EIIEEIREYTKKLALELNVVGLMNVQFAVKD---DEVYVIEVNPRAS 842 (1066)
T ss_pred --------cCCCCCH-----HHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC---CeEEEEEEecCCC
Confidence 0001110 1134689999999999999 56679999864 3699999998776
No 37
>PRK06849 hypothetical protein; Provisional
Probab=99.61 E-value=9.2e-14 Score=137.24 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=114.8
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 101 ~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
+...++++++.|+||..+.+.+.++ ||++|+|+.+. +.+++.+ +.....+||+|+||..++| ++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~-~~~~l~~-~~~~~~~~P~vlKP~~~~~---~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLIT-DPEAIRN-FMFKTPHTPYVLKPIYSRF---VRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHH-HhhcCCCCcEEEEeCcccC---CCeEEE
Confidence 4568899999999999999999975 99999999985 3333322 1222238999999998554 578888
Q ss_pred EeChhhhhcc----CCCeEEEecccCCCeEE--EEEEECCEEEEE-EeecCCCccchhhhccceeeecccccccccccCC
Q 019509 181 AYDRFSLSEL----EPPMLLQEFVNHGGILF--KIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 253 (340)
Q Consensus 181 v~~~~~L~~l----~~p~v~QEfI~h~G~~~--KV~ViG~~v~~~-~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (340)
+.+.+.++.+ ..|+++||||+ |..+ -.++.++++.+. .++ +... ...+. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~~-----~~~~~-----------~--- 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEYC-----AGSGA-----------Q--- 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--cccc-----CCCCc-----------e---
Confidence 8888777765 35799999997 5554 455667776542 211 1110 00000 0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 254 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
....+ . ..+.+.+++.++.++||++ .++||++.+. +| ++|+||||.=++
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 00001 0 1356899999999999987 7789999873 44 799999997665
No 38
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.61 E-value=6.4e-14 Score=138.22 Aligned_cols=230 Identities=13% Similarity=0.198 Sum_probs=146.2
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCC--------------C---------CCCccEEEEccCchhhHHHHHHHHHhCCCeee
Q 019509 46 PKLEILARNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~--------------~---------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~V 102 (340)
..+..+++++|+++..+|.+..-. + ...+|+|+.-.... ....+..+ ++. ++++
T Consensus 25 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~-~~~~~~~l-~~~-g~~~ 101 (395)
T PRK09288 25 KEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAI-ATDALVEL-EKE-GFNV 101 (395)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcC-CHHHHHHH-Hhc-CCee
Confidence 357778899999999988753110 0 12467776543321 12233333 333 6777
Q ss_pred cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEe
Q 019509 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (340)
Q Consensus 103 iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~ 182 (340)
..++++++.++||..+.+.|.+ ..|||+|++..+. +.+++.+. ...++||+|+||.. |+ .|.++.++.
T Consensus 102 ~~~~~a~~~~~dK~~~k~~l~~------~~gip~p~~~~~~-s~~~l~~~--~~~~g~P~VvKP~~--g~-~s~Gv~~v~ 169 (395)
T PRK09288 102 VPTARATRLTMNREGIRRLAAE------ELGLPTSPYRFAD-SLEELRAA--VEEIGYPCVVKPVM--SS-SGKGQSVVR 169 (395)
T ss_pred CCCHHHHHHHhCHHHHHHHHHH------hCCCCCCCceEEC-CHHHHHHH--HHhcCCCEEEEeCC--Cc-CCCCeEEEC
Confidence 7889999999999998888752 1499999999886 33333232 24689999999985 43 568999999
Q ss_pred Chhhhhcc-----------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCccchhhhccceeeecccccccc
Q 019509 183 DRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 183 ~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
+.++|.+. ..++|+||||+ .|..+.|.++.+. ...+ ....+. . ..+.+...
T Consensus 170 ~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~-----~-~~~~~~~~------ 234 (395)
T PRK09288 170 SPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHR-----Q-EDGDYRES------ 234 (395)
T ss_pred CHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccE-----E-ECCEEEEE------
Confidence 99887542 25799999996 3778888777432 2221 011111 0 01111000
Q ss_pred cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCccc
Q 019509 249 ASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 315 (340)
. .+..+++ ...++++++|.++.++||. +++.+|++++.+ ++||||+|.-||-.+...
T Consensus 235 -~-~p~~l~~-----~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~ 292 (395)
T PRK09288 235 -W-QPQPMSP-----AALEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVT 292 (395)
T ss_pred -E-CCCCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCccee
Confidence 0 0111111 1134578899999999985 445699998642 699999999998655443
No 39
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.60 E-value=1.6e-13 Score=151.00 Aligned_cols=229 Identities=17% Similarity=0.256 Sum_probs=146.7
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCCC-C-----------------------CCCCccEEEEccCchhhHHHHHHHHHhCC
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRPL-S-----------------------DQGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~l-~-----------------------~q~~~DvilhK~t~~~~~~~l~~~~~~~p 98 (340)
+..-.++++++++|++++.+|.+... + +....|.|+.-..+... ..+....++ .
T Consensus 575 ~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~-~ 652 (1050)
T TIGR01369 575 YCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEE-A 652 (1050)
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHH-C
Confidence 44456899999999999999875311 1 01234555544443322 122222233 4
Q ss_pred Ceeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 99 ~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
|++++ ++++++..|.||..+.++|.++ |||+|++..+. +.+++.+. ...++||+|+||..+. +|.+
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~-s~ee~~~~--~~~igyPvIVKP~~~~---Gg~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTAT-SVEEAVEF--ASEIGYPVLVRPSYVL---GGRA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEEC-CHHHHHHH--HHhcCCCEEEEECCCC---CCCC
Confidence 66665 7899999999999999999975 99999999885 33333332 2468999999998744 4589
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEE--EEEECCEEEEE--EeecCCCccchhhhccceeeecccc
Q 019509 178 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVV--RRFSLPNVSKRELAKVVSVFRFPRV 244 (340)
Q Consensus 178 m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~K--V~ViG~~v~~~--~R~sl~~~~~~~~~~~~~~~~~~~~ 244 (340)
|.+++|+++|... +.|+++||||+ +|..+- +++-|+++.+. +.+-... .....+....++
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~----gv~sGds~~~~P-- 792 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEA----GVHSGDSTCVLP-- 792 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeeccc----CCcCCCceEEec--
Confidence 9999999988652 46899999996 366554 45556666542 2211000 000000000000
Q ss_pred cccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 245 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
...+++ ...+.+++++.+++++||+. ++++|++++. +++||||||.-++
T Consensus 793 --------~~~l~~-----~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~---~~~yvIEvNpR~s 842 (1050)
T TIGR01369 793 --------PQTLSA-----EIVDRIKDIVRKIAKELNVKGLMNIQFAVKD---GEVYVIEVNPRAS 842 (1050)
T ss_pred --------CCCCCH-----HHHHHHHHHHHHHHHHCCCcceEEEEEEEEC---CeEEEEEEeCCCC
Confidence 001110 01346899999999999974 4459999874 3699999999876
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.58 E-value=9.5e-14 Score=139.51 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=141.1
Q ss_pred chHHHHHHHhCCCEEEEecC--CC--CCCC----------------------------CCCccEEEEccCch-hhHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQ--NR--PLSD----------------------------QGPFDVVLHKLSGM-EWCKIIE 91 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~--~~--~l~~----------------------------q~~~DvilhK~t~~-~~~~~l~ 91 (340)
.-+++++|+++|++.+.++- +. +-.. ...+|+|++=.... .. ..+.
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~-~~~a 94 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSEN-QNFV 94 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccC-HHHH
Confidence 34788999999999988843 22 1000 12345555433110 01 1223
Q ss_pred HHHHhCCCee-ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCC
Q 019509 92 DYRQKHPEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (340)
Q Consensus 92 ~~~~~~p~v~-ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~ 168 (340)
+..+ ..|++ +-.++++++.|+||..+.+.|.++ |||+|++. .+. +.++..+ ....++||+|+||..
T Consensus 95 ~~~e-~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~--~~~~~g~PvvvKP~~ 163 (445)
T PRK08462 95 EICS-HHNIKFIGPSVEVMALMSDKSKAKEVMKRA-------GVPVIPGSDGALK-SYEEAKK--IAKEIGYPVILKAAA 163 (445)
T ss_pred HHHH-HCCCeEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEeCC
Confidence 3333 35665 458889999999999999999974 99998864 232 2222222 234689999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Eee-cCCCccch
Q 019509 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKR 230 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~-~R~-sl~~~~~~ 230 (340)
++ +|++|.++.++++|... +.++++||||+ +++.+.+.++++. ++.. .|. +...
T Consensus 164 g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~---- 235 (445)
T PRK08462 164 GG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR---- 235 (445)
T ss_pred CC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee----
Confidence 44 46899999999988642 24699999996 4677888888653 2221 111 1100
Q ss_pred hhhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019509 231 ELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fP 308 (340)
. ....+. . .+. .+++ ...+.+.++|.++.++||+.-++ ||++++.+ | .+||+|||.-+
T Consensus 236 --~-~~~~~~---------~-~p~~~l~~-----~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~ 295 (445)
T PRK08462 236 --R-HQKLIE---------E-SPAVVLDE-----KTRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRL 295 (445)
T ss_pred --c-ccceEE---------E-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCc
Confidence 0 000000 0 000 1111 01356899999999999997555 99999753 3 68999999988
Q ss_pred CCC
Q 019509 309 GYG 311 (340)
Q Consensus 309 g~~ 311 (340)
|-.
T Consensus 296 ~~~ 298 (445)
T PRK08462 296 QVE 298 (445)
T ss_pred CcC
Confidence 743
No 41
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.56 E-value=2.8e-13 Score=137.17 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=119.1
Q ss_pred CCee-ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCCCCCc
Q 019509 98 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 98 p~v~-ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
.|++ +-.++++++.|.||..+.+.|.++ |||+|++. .+. +.++..+ ....++||+|+||..++ +
T Consensus 101 ~gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~--~~~~igyPvvvKp~~gg---g 167 (467)
T PRK12833 101 AGLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALE--VAARIGYPLMIKAAAGG---G 167 (467)
T ss_pred cCCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHH--HHHHhCCCEEEEECCCC---C
Confidence 3554 456789999999999999999974 99998775 443 3222222 23468999999998743 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE--EE-EEEee-cCCCccchhhhccce
Q 019509 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET--IK-VVRRF-SLPNVSKRELAKVVS 237 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~--v~-~~~R~-sl~~~~~~~~~~~~~ 237 (340)
|.+|.++.++++|.+. +..+++|+||+. |+.+-|-|+||. ++ ...|. +... . ...
T Consensus 168 g~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r------~-~~k 239 (467)
T PRK12833 168 GRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQR------R-RQK 239 (467)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeeccccc------C-Ccc
Confidence 6899999999888642 356999999973 789999888874 22 23331 1100 0 000
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.+.. +....+++ ...+.+.++|.++.++||+.-.+ +|++.+..+| .+||+|||.-++..
T Consensus 240 i~e~---------~p~~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 240 ILEE---------APSPSLTP-----AQRDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EEEE---------CCCCCCCH-----HHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 0000 00001111 12356899999999999998554 9999874333 69999999888643
No 42
>PRK05586 biotin carboxylase; Validated
Probab=99.56 E-value=1.2e-13 Score=138.88 Aligned_cols=179 Identities=12% Similarity=0.184 Sum_probs=118.0
Q ss_pred CCee-ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCCCCCc
Q 019509 98 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 98 p~v~-ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
-|++ +--+++++..++||..+.+.|.+ .|||+|++. .+. +.+++.+. ...++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~-------~GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~~--gg-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIK-------AGVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKASA--GG-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHH-------CCCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECC--CC-C
Confidence 4553 55788999999999999999987 499999874 333 22222221 34689999999987 43 5
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCccchhhhcccee
Q 019509 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSV 238 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~ 238 (340)
|++|.++.++++|.+. +.++++||||+ +++.+.+.|+++. +.....+... +. +.....
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~-~~----~~~~~~ 238 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS-LQ----RRNQKV 238 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc-eE----ecccce
Confidence 7999999999987542 35799999996 3478888888753 3322111100 00 000000
Q ss_pred eecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 239 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.. .+....+++ ...+.++++|.++.++||+.-.+ +|++++. +| ++||+|||.-||..
T Consensus 239 ~~---------~~p~~~l~~-----~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 239 LE---------EAPSPVMTE-----ELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred EE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 00 000001110 01346899999999999988776 9999974 33 69999999888644
No 43
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.56 E-value=3.1e-13 Score=146.53 Aligned_cols=222 Identities=16% Similarity=0.170 Sum_probs=140.3
Q ss_pred HHHHHHHhCCCEEEEecCCCCC-CC-C------------------------CCccEEEEccCchhhHHHHHHHHHhCCCe
Q 019509 47 KLEILARNKGISFVAIDQNRPL-SD-Q------------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l-~~-q------------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v 100 (340)
.|+.+++++|+++..++.+... .. + .++|.|+.- .+.. -.+...+.++-++
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~--se~~-v~~aa~lae~lgl 94 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSS--SEYF-IEVASEVARRLGL 94 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeC--chhh-HHHHHHHHHHhCc
Confidence 4788999999999998764321 10 0 112222221 0111 1122233344556
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 101 ~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
+. ++++++..++||..|-+.|.+ .||++|++..+. +..+..+. ...++||+|+||..+. +|.++.+
T Consensus 95 pg-~~~ea~~~~~dK~~~r~~L~~-------~GIp~P~~~~v~-~~~e~~~~--~~~~~~PvVVKP~~g~---gS~GV~~ 160 (887)
T PRK02186 95 PA-ANTEAIRTCRDKKRLARTLRD-------HGIDVPRTHALA-LRAVALDA--LDGLTYPVVVKPRMGS---GSVGVRL 160 (887)
T ss_pred CC-CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEeC-CHHHHHHH--HHhCCCCEEEEeCCCC---CCCCeEE
Confidence 65 568999999999999999997 499999999885 33222222 2468999999998844 4689999
Q ss_pred EeChhhhhcc--------CCCeEEEecccCCCeEEEE--EEECCEEE--EEEeecCCCccchhhhccceeeecccccccc
Q 019509 181 AYDRFSLSEL--------EPPMLLQEFVNHGGILFKI--YIIGETIK--VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 181 v~~~~~L~~l--------~~p~v~QEfI~h~G~~~KV--~ViG~~v~--~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
+.|.++|... ..++++||||+ |..|-| ++.++.+. .+.++....-+ .+... +
T Consensus 161 v~~~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~~~--~~ve~-g----------- 224 (887)
T PRK02186 161 CASVAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGPPP--HFVEI-G----------- 224 (887)
T ss_pred ECCHHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCCCC--CeEEe-c-----------
Confidence 9999887542 46899999996 666655 44444432 34443321100 00000 0
Q ss_pred cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 249 ASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
...+..+++ +..+.+.+++.++.++||+ +.+.+|++.+. ++++|||||.-+|=
T Consensus 225 -~~~P~~l~~-----~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~---~g~~liEIn~R~~G 279 (887)
T PRK02186 225 -HDFPAPLSA-----PQRERIVRTVLRALDAVGYAFGPAHTELRVRG---DTVVIIEINPRLAG 279 (887)
T ss_pred -cccCCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC---CCEEEEEECCCCCC
Confidence 000111111 1235688999999999998 66889999864 25899999987763
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.53 E-value=5.2e-13 Score=131.83 Aligned_cols=213 Identities=14% Similarity=0.148 Sum_probs=131.7
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~ 123 (340)
.+++.+.|++.+++++.+.++.++. ..+....++ .|++++ .++++++.+.||..+.+.|.
T Consensus 16 ~~~l~~~~~~~~id~vi~g~E~~l~------------------~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~ 76 (379)
T PRK13790 16 HQAILDFAKQQNVDWVVIGPEQPLI------------------DGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIME 76 (379)
T ss_pred HHHHHHHHHHhCCCEEEECCcHHHH------------------HHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHH
Confidence 3478899999999888876654221 223333333 467666 55699999999999999999
Q ss_pred hccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc---------CCCe
Q 019509 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPM 194 (340)
Q Consensus 124 ~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~ 194 (340)
+ +|||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.+|.++.+.+++.+. ..++
T Consensus 77 ~-------~gIptp~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~v 143 (379)
T PRK13790 77 K-------YNIPTADYKEVE-RKKDALTY--IENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDEEEGTV 143 (379)
T ss_pred H-------CCCCCCCEEEEC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeE
Confidence 7 499999998875 33223332 23689999999985 33 57899999999887541 3479
Q ss_pred EEEecccCCCeEEEEEEE--CCEEEE---EEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCC---h
Q 019509 195 LLQEFVNHGGILFKIYII--GETIKV---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP---R 266 (340)
Q Consensus 195 v~QEfI~h~G~~~KV~Vi--G~~v~~---~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~ 266 (340)
++||||. |..+-|.++ |+.++. ..+.... .|+.....+.+. -+...|. ..+++ +
T Consensus 144 lvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~kr------------~~~~d~g~~tgg---~~~~~p~-~~l~~~~~~ 205 (379)
T PRK13790 144 VFETFLE--GEEFSLMTFVNGDLAVPFDCIAQDHKR------------AFDHDEGPNTGG---MGAYCPV-PHISDDVLK 205 (379)
T ss_pred EEEEccc--CceEEEEEEeeCCEEEecccccccccc------------cccCCCCCcCCC---CceEeeC-CCCCHHHHH
Confidence 9999995 677766555 443221 1110000 011000000000 0000110 00110 1
Q ss_pred hHHHHHHHHHHHHh---CCcEeE---EEEEEecCcCCeEEEEeccCCCCC
Q 019509 267 PLLERLARELRHRL---GLRLFN---IDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 267 ~~~~~lA~~~~~~l---Gl~l~G---vDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
...++++.++.++| |+.++| +|++++. . .+||+|+|.-||=
T Consensus 206 ~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~--g~~viEiN~R~G~ 252 (379)
T PRK13790 206 LTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-D--GPKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CeEEEEEEcccCC
Confidence 11278888888888 666666 5999864 2 4899999998864
No 45
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.53 E-value=8.3e-13 Score=132.98 Aligned_cols=229 Identities=12% Similarity=0.168 Sum_probs=140.5
Q ss_pred hHHHHHHHhCCCEEEEecCC--CC-C----CC-------------------------CCCccEEEEccCc-hhhHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQN--RP-L----SD-------------------------QGPFDVVLHKLSG-MEWCKIIED 92 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~--~~-l----~~-------------------------q~~~DvilhK~t~-~~~~~~l~~ 92 (340)
-+++++|+++|++++.+|.+ .. . .+ ...+|+|++-..- .+... +.+
T Consensus 15 ~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~-~a~ 93 (449)
T TIGR00514 15 LRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENAN-FAE 93 (449)
T ss_pred HHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHH-HHH
Confidence 36889999999999999652 11 0 10 0235666554311 01111 222
Q ss_pred HHHhCCCeee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 93 YRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 93 ~~~~~p~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
..++ -|+++ -.++++++.|+||..+.+.|.+ +|||+|++. .+. +.+++.+ ....++||+|+||..+
T Consensus 94 ~~e~-~Gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP~~g 162 (449)
T TIGR00514 94 QCER-SGFTFIGPSAESIRLMGDKVSAIETMKK-------AGVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKATAG 162 (449)
T ss_pred HHHH-CCCcEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEeCCC
Confidence 3333 46653 4789999999999999999997 499998864 332 2222222 2246899999999874
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELA 233 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~ 233 (340)
+ +|++|.++.+.++|.+. ..++++||||. +++.+-+-++++ ++.....+. ..+. ..
T Consensus 163 ~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~-~~~~---~~ 234 (449)
T TIGR00514 163 G---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGERD-CSIQ---RR 234 (449)
T ss_pred C---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEeccc-cCce---ec
Confidence 4 46899999999887642 24699999996 467777777764 233221100 0000 00
Q ss_pred ccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 234 KVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
...... ......+++ ...+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.-++..
T Consensus 235 -~~~~~~---------~~p~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~~ 296 (449)
T TIGR00514 235 -HQKLLE---------EAPSPALTP-----ELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQVE 296 (449)
T ss_pred -ccceEE---------ECCCCCCCH-----HHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCCC
Confidence 000000 000001111 12356889999999999997554 9999974 23 58999999888643
No 46
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.53 E-value=1.1e-12 Score=133.91 Aligned_cols=176 Identities=11% Similarity=0.185 Sum_probs=118.9
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ecCCCChhhHHHhhCCCCcEEEecCCCCCCCcc
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~s 175 (340)
.|++++ .++++++.+.||..+.+.+.++ |||+|++... -.+.++..+ ....++||+|+||..++ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~Gg---GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASAGG---GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCCCC---CC
Confidence 466655 5689999999999999999874 9999877642 112222222 23468999999998744 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCccchhhhccce
Q 019509 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVS 237 (340)
Q Consensus 176 h~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~-~~~R~-sl~~~~~~~~~~~~~ 237 (340)
.||.++.++++|.+. +.++++|+||. +++.+-|-|++|. +. ...|. |... +.+ .
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqr------r~q-k 237 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQR------RHQ-K 237 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeecccccc------Ccc-c
Confidence 899999999987542 35799999997 4677888888764 22 33332 1110 000 0
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 238 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
... . .++ .+++ ...+.+.++|.++++++|..-+| ||++.++ + ++|++|||.-++..
T Consensus 238 ~ie---------~-~Pa~~l~~-----~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 238 LIE---------E-APSPIMTP-----ELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred eEE---------E-CCCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 000 0 000 1111 12356899999999999999877 9999863 3 69999999988754
No 47
>PLN02735 carbamoyl-phosphate synthase
Probab=99.52 E-value=8e-13 Score=145.56 Aligned_cols=232 Identities=14% Similarity=0.179 Sum_probs=147.9
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCCC------------------------CCCCCccEEEEccCchhhH--H-HHH-HHH
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRPL------------------------SDQGPFDVVLHKLSGMEWC--K-IIE-DYR 94 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~l------------------------~~q~~~DvilhK~t~~~~~--~-~l~-~~~ 94 (340)
+.-..+.+++++.|++++.+|.+-.. .+...+|+|++=+...... . .+. +..
T Consensus 44 ~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~ 123 (1102)
T PLN02735 44 YSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGI 123 (1102)
T ss_pred chHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCH
Confidence 44456899999999999999985411 0124578888755433211 1 122 122
Q ss_pred HhCCCeee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCC-CcEEEecCCCCCC
Q 019509 95 QKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGS 172 (340)
Q Consensus 95 ~~~p~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~PvVvKP~~a~Gs 172 (340)
-+..|+++ -.+++++..|.||..+-+.|.++ |||+|++..+. +.++..+. ...++ ||+|+||..+.
T Consensus 124 Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~-s~eea~~~--~~~iG~yPvVVKP~~~~-- 191 (1102)
T PLN02735 124 LEKYGVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIAT-TLDECFEI--AEDIGEFPLIIRPAFTL-- 191 (1102)
T ss_pred HHHCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeC-CHHHHHHH--HHHhCCCCEEEEeCCCC--
Confidence 12245544 46889999999999999999874 99999999885 32222222 24577 99999998744
Q ss_pred CcceeeEEEeChhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCccchhhhccceee
Q 019509 173 AKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 173 ~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~ 239 (340)
++.++.+++|+++|... ..++++||||. | +.|-|-|++|. +..+. +.-+.+.....
T Consensus 192 -GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~--G~kE~ev~Vl~D~~g~~i~v~--~ie~~dp~gvh------ 260 (1102)
T PLN02735 192 -GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL--GWKEYELEVMRDLADNVVIIC--SIENIDPMGVH------ 260 (1102)
T ss_pred -CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC--CCeEEEEEEEEcCCCCEEEEe--eEEEEcCCccc------
Confidence 45689999999988652 35799999995 6 78999998762 22110 01011000000
Q ss_pred ecccccccccc-cCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 240 RFPRVSSAAAS-ADDA-DLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 240 ~~~~~~~~~~~-~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.+.+. ..+. .+++ .....++++|.++.++||+ +.+.+|++.+..+| ++||||||.-++
T Consensus 261 ------~G~s~~vaPa~tL~~-----~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 261 ------TGDSITVAPAQTLTD-----KEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred ------cCCEEEEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 00000 0011 1111 0134689999999999998 68889999974233 799999994443
No 48
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.52 E-value=1.6e-12 Score=132.03 Aligned_cols=227 Identities=13% Similarity=0.132 Sum_probs=140.5
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC-------CC------------------------CCCccEEEEccCc-hhhHHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPL-------SD------------------------QGPFDVVLHKLSG-MEWCKIIEDY 93 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l-------~~------------------------q~~~DvilhK~t~-~~~~~~l~~~ 93 (340)
-+++++|+++|++++.++.+..- .+ ...+|+|++=... .+.. .+.+.
T Consensus 15 ~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~-~~a~~ 93 (478)
T PRK08463 15 VRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENY-EFAKA 93 (478)
T ss_pred HHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCH-HHHHH
Confidence 36889999999998877753100 00 1124555542211 0111 12222
Q ss_pred HHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEe-cCCCChhhHHHhhCCCCcEEEecCCCC
Q 019509 94 RQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVD 170 (340)
Q Consensus 94 ~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~-~~~~-~~~~~~~~~l~~~~l~~PvVvKP~~a~ 170 (340)
.++ .|++++ .++++++.+.||..+.+.+.++ |||+|+. .... .+.++..+ ....++||+|+||..++
T Consensus 94 ~e~-~Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~--~~~~igyPvvvKP~~gg 163 (478)
T PRK08463 94 VED-AGIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKI--FARKIGYPVILKASGGG 163 (478)
T ss_pred HHH-CCCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHH--HHHHhCCCEEEEeCCCC
Confidence 333 467765 6689999999999999999974 9999774 4332 12222222 22468999999998744
Q ss_pred CCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCccchhh
Q 019509 171 GSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKREL 232 (340)
Q Consensus 171 Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~-~~~R~-sl~~~~~~~~ 232 (340)
+|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. +. ...|- +...
T Consensus 164 ---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~~------ 233 (478)
T PRK08463 164 ---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQR------ 233 (478)
T ss_pred ---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcccc------
Confidence 46899999999987542 35799999997 3676777777654 32 22221 1100
Q ss_pred hccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019509 233 AKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
. .... +. . .+. .+++ ...+.++++|.++.++||+.-+| +|++++. ++ ++||+|||.-++.
T Consensus 234 ~-~~~~-----ie----~-~P~~~l~~-----~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~~ 295 (478)
T PRK08463 234 R-HQKV-----IE----I-APCPSISD-----NLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQV 295 (478)
T ss_pred c-cCce-----EE----E-CCCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCC
Confidence 0 0000 00 0 000 1111 11345788999999999988777 9999975 33 6999999988765
Q ss_pred C
Q 019509 311 G 311 (340)
Q Consensus 311 ~ 311 (340)
.
T Consensus 296 ~ 296 (478)
T PRK08463 296 E 296 (478)
T ss_pred C
Confidence 4
No 49
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.51 E-value=1.3e-12 Score=132.46 Aligned_cols=229 Identities=12% Similarity=0.140 Sum_probs=141.0
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC-------CC------------------------CCCccEEEEccC-chhhHHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPL-------SD------------------------QGPFDVVLHKLS-GMEWCKIIEDY 93 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l-------~~------------------------q~~~DvilhK~t-~~~~~~~l~~~ 93 (340)
.+++++|+++|++++.++.+..- .+ ...+|+|++=.. ..+. ..+.+.
T Consensus 15 ~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~-~~~a~~ 93 (472)
T PRK07178 15 VRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSEN-AELAEI 93 (472)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccC-HHHHHH
Confidence 36889999999999998754211 00 013556554210 0011 123333
Q ss_pred HHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ecCCCChhhHHHhhCCCCcEEEecCCCCC
Q 019509 94 RQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (340)
Q Consensus 94 ~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~PvVvKP~~a~G 171 (340)
.++ .|++++ .++++++.|.||..+.+.|.++ |||+|++... -.+.++..+ ....++||+|+||..++
T Consensus 94 ~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~gg- 162 (472)
T PRK07178 94 CAE-RGIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATSGG- 162 (472)
T ss_pred HHH-cCCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCCCC-
Confidence 333 466654 6689999999999999999974 9999877532 112222222 23468999999998744
Q ss_pred CCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEeecCCCccchhhhc
Q 019509 172 SAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRFSLPNVSKRELAK 234 (340)
Q Consensus 172 s~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~-~~~R~sl~~~~~~~~~~ 234 (340)
+|++|.++.++++|.+. ..++++|+||. +++.+-|-|+++. +. ...|.- .+. ..
T Consensus 163 --Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~--s~~----~~ 233 (472)
T PRK07178 163 --GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC--SIQ----RR 233 (472)
T ss_pred --CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc--ceE----ec
Confidence 46899999999988642 34799999996 5777777777643 22 222210 000 00
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 235 VVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
+... ...+....+++ ...+.++++|.++.++||+.-.| +|++++.+ | ++||+|||.-++..
T Consensus 234 -------~~~~--~e~~P~~~l~~-----~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~~ 295 (472)
T PRK07178 234 -------NQKL--IEIAPSPQLTP-----EQRAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQVE 295 (472)
T ss_pred -------Ccce--EEECCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCCC
Confidence 0000 00000001111 11345789999999999986655 99999743 3 69999999887643
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.50 E-value=2.2e-12 Score=129.76 Aligned_cols=229 Identities=13% Similarity=0.144 Sum_probs=139.3
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC-------CC-------------------------CCCccEEEEccCc-hhhHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPL-------SD-------------------------QGPFDVVLHKLSG-MEWCKIIED 92 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l-------~~-------------------------q~~~DvilhK~t~-~~~~~~l~~ 92 (340)
..++++|+++|++++.++.+..- .+ ...+|+|+.-... .++. .+..
T Consensus 15 ~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~-~~~~ 93 (451)
T PRK08591 15 LRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSENA-DFAE 93 (451)
T ss_pred HHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccCH-HHHH
Confidence 36788999999999888443110 00 1124555543311 0111 1222
Q ss_pred HHHhCCCeee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 93 YRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 93 ~~~~~p~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
..+ .-|+++ -.+++++..+.||..+.+.|.++ |||+|++. .+. +.++..+. ...++||+|+||..+
T Consensus 94 ~~e-~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~~--~~~~g~PvvvKP~~g 162 (451)
T PRK08591 94 ICE-DSGFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALAI--AKEIGYPVIIKATAG 162 (451)
T ss_pred HHH-HCCCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCC
Confidence 222 345654 47899999999999999999974 99998863 343 22222222 246899999999874
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCccchhhh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELA 233 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~ 233 (340)
+ +|.++.++.++++|.+. ...+++||||+ +++.+-+-+++|. +....-+.. .+. .
T Consensus 163 ~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~-~~~----~ 233 (451)
T PRK08591 163 G---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC-SLQ----R 233 (451)
T ss_pred C---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc-cce----e
Confidence 3 46899999999887642 24699999996 3667777777543 332211100 000 0
Q ss_pred ccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 234 KVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.....+ . .+....+++ ...+.+.++|.++.++||+.-.+ ||++.+. +| ++||+|||.-++..
T Consensus 234 ~~~~~~-----~----~~p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 234 RHQKVL-----E----EAPSPAITE-----ELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred cceeEE-----E----ECCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 000000 0 000001111 12456899999999999987554 9999974 33 69999999888643
No 51
>PLN02735 carbamoyl-phosphate synthase
Probab=99.49 E-value=2.2e-12 Score=142.09 Aligned_cols=227 Identities=15% Similarity=0.245 Sum_probs=147.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCC-C------C-----------------CCCccEEEEccCchh---hHHHHHHHHHhCC-
Q 019509 47 KLEILARNKGISFVAIDQNRPL-S------D-----------------QGPFDVVLHKLSGME---WCKIIEDYRQKHP- 98 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l-~------~-----------------q~~~DvilhK~t~~~---~~~~l~~~~~~~p- 98 (340)
..+++++++|++.+.+|-+-.- . + ....|+|+.=...+. ....+.++..+++
T Consensus 599 ~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~ 678 (1102)
T PLN02735 599 HASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPP 678 (1102)
T ss_pred HHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccc
Confidence 5788999999999999865311 1 1 133567766554432 1233444443332
Q ss_pred -------Ce-eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCC
Q 019509 99 -------EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD 170 (340)
Q Consensus 99 -------~v-~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~ 170 (340)
++ ++-.+++++..|.||..+-+.|.++ |||+|++..+. +.+++.+ ....++||+|+||..+.
T Consensus 679 fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~-s~eea~~--~a~~iGyPvvVKP~~g~ 748 (1102)
T PLN02735 679 PSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIAR-SEADALA--IAKRIGYPVVVRPSYVL 748 (1102)
T ss_pred hhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeC-CHHHHHH--HHHhcCCCeEEEeCCCC
Confidence 32 4568899999999999999999974 99999998875 3322222 23468999999998733
Q ss_pred CCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEeecCCCccchhhhccce
Q 019509 171 GSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKRELAKVVS 237 (340)
Q Consensus 171 Gs~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~-~~R~sl~~~~~~~~~~~~~ 237 (340)
+|.+|.++++.++|... +.++++|+||. +|+.+-|-+++| .+.+ ..+.-... .+
T Consensus 749 ---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~g 815 (1102)
T PLN02735 749 ---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIEQ---------AG 815 (1102)
T ss_pred ---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeeec---------cC
Confidence 46899999999988652 35799999996 489999999975 2322 11100000 00
Q ss_pred eeecccccccccc-cCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEeccCCCC
Q 019509 238 VFRFPRVSSAAAS-ADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~-GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. |. +.+. ..+. .+++ ...++++++|.+++++||..-+ .+|++++.+ | ++||+|||.-||
T Consensus 816 v---hs---Gds~~~~P~~~L~~-----e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~d-g-~~yviEiNpR~s 877 (1102)
T PLN02735 816 V---HS---GDSACSLPTQTIPS-----SCLATIRDWTTKLAKRLNVCGLMNCQYAITPS-G-EVYIIEANPRAS 877 (1102)
T ss_pred c---cC---CCccEEecCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeeEEEEEcCC-C-cEEEEEEeCCCC
Confidence 0 00 0000 0000 1111 0135688999999999997644 599998632 3 699999999998
No 52
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.49 E-value=2.2e-12 Score=142.23 Aligned_cols=228 Identities=18% Similarity=0.302 Sum_probs=144.7
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCC-CC-----------------------CCCCccEEEEccCchhhHHHHHHHHHhCC
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRP-LS-----------------------DQGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~-l~-----------------------~q~~~DvilhK~t~~~~~~~l~~~~~~~p 98 (340)
+.+-..++++++.|++++.+|.+-. .+ +...+|.|+.-..+... ..+..-.+ ..
T Consensus 576 y~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~~-~~la~~le-~~ 653 (1068)
T PRK12815 576 YSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQTA-INLAKGLE-EA 653 (1068)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHHH-HHHHHHHH-HC
Confidence 3333568899999999999987631 11 01235555554333311 12222222 24
Q ss_pred Ceee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 99 EVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 99 ~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
|+.+ -.+++++..+.||..+.++|.++ ||++|++..+. +.+++.+. ...++||+|+||..+. +|.+
T Consensus 654 Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~-s~ee~~~~--~~~igyPvVVKP~~~~---Gg~g 720 (1068)
T PRK12815 654 GLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTAT-DEEEAFAF--AKRIGYPVLIRPSYVI---GGQG 720 (1068)
T ss_pred CCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeC-CHHHHHHH--HHhcCCCEEEEeCCCC---CCCC
Confidence 6654 46799999999999999999985 99999999885 33333222 3468999999998744 4689
Q ss_pred eEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECC--EEEE--EEeecCCCccchhhhccceeeecccccc
Q 019509 178 LFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE--TIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSS 246 (340)
Q Consensus 178 m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~--~v~~--~~R~sl~~~~~~~~~~~~~~~~~~~~~~ 246 (340)
|.+++++++|.++ ..|+++|||| +|..+-|.++.| .+.+ +..+.-+ .+. +....
T Consensus 721 v~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~----------~gv---~sGds 785 (1068)
T PRK12815 721 MAVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQ----------AGV---HSGDS 785 (1068)
T ss_pred EEEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeec----------cCC---cCCCe
Confidence 9999999988652 4689999999 477777666643 3332 1111000 000 00000
Q ss_pred cccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 247 AAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 247 ~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. ....+..+++ ...+.+++++.+++++||+. +++||+++++ +++||||||.-+|
T Consensus 786 ~-~v~pp~~l~~-----~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~---~~~yviEiNpR~s 840 (1068)
T PRK12815 786 I-AVLPPQSLSE-----EQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN---DEIYVLEVNPRAS 840 (1068)
T ss_pred e-EEECCCCCCH-----HHHHHHHHHHHHHHHHcCCccEEEEEEEEEC---CcEEEEEEeCCCC
Confidence 0 0000111111 12356899999999999965 6679999874 2689999999887
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.47 E-value=2.6e-12 Score=141.77 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=146.4
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC------------------------CCCCCccEEEEccCchhhHH---HHHH--HHHh
Q 019509 46 PKLEILARNKGISFVAIDQNRPL------------------------SDQGPFDVVLHKLSGMEWCK---IIED--YRQK 96 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l------------------------~~q~~~DvilhK~t~~~~~~---~l~~--~~~~ 96 (340)
..+.+++++.|++++.+|.+... .+...+|+||+-+....... .+.+ ..+
T Consensus 31 ~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le- 109 (1066)
T PRK05294 31 TQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLE- 109 (1066)
T ss_pred HHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHH-
Confidence 35788889999999999875311 01235678877665432211 1111 122
Q ss_pred CCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcc
Q 019509 97 HPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (340)
Q Consensus 97 ~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~s 175 (340)
.-|+.++ -++++++.+.||..+.+.|.++ |||+|++..+. +.++..+. ...++||+|+||.. |. +|
T Consensus 110 ~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~-s~~e~~~~--~~~ig~PvVVKP~~--g~-gg 176 (1066)
T PRK05294 110 KYGVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAH-SMEEALEV--AEEIGYPVIIRPSF--TL-GG 176 (1066)
T ss_pred HCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeC-CHHHHHHH--HHHcCCCeEEEcCC--CC-CC
Confidence 2456655 5789999999999999999974 99999999985 33333332 34689999999986 33 56
Q ss_pred eeeEEEeChhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCccchhhhccceeeecc
Q 019509 176 HELFLAYDRFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFP 242 (340)
Q Consensus 176 h~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~~~ 242 (340)
+++.++.++++|... ..++++||||+ | ..+-+-|+.|. +..+.. ..+++.....+ .+..
T Consensus 177 ~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~~--~e~~dp~gih~-g~~~--- 248 (1066)
T PRK05294 177 TGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVCS--IENIDPMGVHT-GDSI--- 248 (1066)
T ss_pred CCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEee--eeeccccceec-CCeE---
Confidence 899999999988653 24799999995 6 57777777442 322211 11111000000 0000
Q ss_pred cccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 243 RVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
...++ .++. ...+.++++|.++.++||+. .+.||+.++..+| ++||+|||.-++
T Consensus 249 -------~~~Pa~~l~~-----~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 249 -------TVAPAQTLTD-----KEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred -------EEeCCCCCCH-----HHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 00011 1110 11346899999999999997 7789999975334 799999995554
No 54
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.46 E-value=2.7e-12 Score=141.29 Aligned_cols=233 Identities=15% Similarity=0.233 Sum_probs=148.1
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCCC-------C-----------------CCCCccEEEEccCchhh--HHH-HH-HHH
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEW--CKI-IE-DYR 94 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~l-------~-----------------~q~~~DvilhK~t~~~~--~~~-l~-~~~ 94 (340)
+.-...++++++.|++++.+|.+... . ....+|+|+.-+..... +.. +. +-.
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~ 106 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGV 106 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhH
Confidence 34446788999999999999986421 0 12457888875543221 111 11 112
Q ss_pred HhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 95 QKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 95 ~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
-+.-|+.++ .+++++..+.||..+.+.|.++ |+|+|++..+. +.++..+ ....++||+|+||.. |+
T Consensus 107 le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~-s~~e~~~--~~~~igyPvIVKP~~--g~- 173 (1050)
T TIGR01369 107 LEKYGVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAH-SVEEALA--AAKEIGYPVIVRPAF--TL- 173 (1050)
T ss_pred HHHCCCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecC-CHHHHHH--HHHHhCCCeEEECCC--CC-
Confidence 233466665 7799999999999999999974 99999999885 3322222 234689999999986 33
Q ss_pred cceeeEEEeChhhhhcc-----C----CCeEEEecccCCC-eEEEEEEECC---EEEEEEeecCCCccchhhhccceeee
Q 019509 174 KSHELFLAYDRFSLSEL-----E----PPMLLQEFVNHGG-ILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFR 240 (340)
Q Consensus 174 ~sh~m~iv~~~~~L~~l-----~----~p~v~QEfI~h~G-~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~~~~ 240 (340)
+|.|+.++.|+++|... . .++++||||+ | ..+-+-|++| .+.++. +..++++....+. +.
T Consensus 174 gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~~--~~e~~~p~gvh~g-~~-- 246 (1050)
T TIGR01369 174 GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITVC--NMENFDPMGVHTG-DS-- 246 (1050)
T ss_pred CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEEe--eceeccCcceecC-ce--
Confidence 56899999999988653 1 4799999996 6 5777777644 222221 1112111000000 00
Q ss_pred cccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCC
Q 019509 241 FPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l-~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+. . .++ .+++ ...+.++++|.++.++||+.- +.||++++.++| ++||+|||.-++
T Consensus 247 ---i~----v-~Pa~tl~~-----~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 247 ---IV----V-APSQTLTD-----KEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ---EE----E-ecCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 00 0 011 0110 012458999999999999964 459999975333 799999997665
No 55
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.46 E-value=4.8e-12 Score=126.29 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .++++++.+.||..+.+.|.+ .|||+|++..+. +.++..+. ...++||+|+||..+. +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~-~~~~~~~~--~~~~~~P~VvKP~~~~---gs~ 151 (420)
T PRK00885 85 AGLPIFGPTKAAAQLEGSKAFAKDFMAR-------YGIPTAAYETFT-DAEEALAY--LDEKGAPIVVKADGLA---AGK 151 (420)
T ss_pred CCCcEECcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEeCCCC---CCC
Confidence 466665 577899999999999999997 499999999885 33333332 2358999999998633 568
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 019509 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE 214 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~ 214 (340)
++.++.+.+++.+. ..++++||||+ |..|-|.++.+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 152 GVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred cEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 99999999887531 24799999995 88888877743
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.46 E-value=4.5e-12 Score=139.49 Aligned_cols=226 Identities=13% Similarity=0.130 Sum_probs=142.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCC-----------------------------------CCCccEEEEccCc-hhhHHHH
Q 019509 47 KLEILARNKGISFVAIDQNRPLSD-----------------------------------QGPFDVVLHKLSG-MEWCKII 90 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~-----------------------------------q~~~DvilhK~t~-~~~~~~l 90 (340)
+++++|+++|++.+.++.+..-.. ...+|+|++=..- .+. ..+
T Consensus 13 ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~-~~~ 91 (1143)
T TIGR01235 13 RVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSEN-SEF 91 (1143)
T ss_pred HHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccC-HHH
Confidence 588899999999999977532100 0123555442100 011 112
Q ss_pred HHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ecCCCChhhHHHhhCCCCcEEEecCC
Q 019509 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLV 168 (340)
Q Consensus 91 ~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~PvVvKP~~ 168 (340)
.+..++ .|+.++ .++++++.|.||..+.+.+.++ |||+|++... -.+.++..+. ...++||+|+||..
T Consensus 92 a~~le~-~Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~~--ae~iGyPvIVKP~~ 161 (1143)
T TIGR01235 92 ADACNK-AGIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLDF--AAAIGYPVIIKASW 161 (1143)
T ss_pred HHHHHH-cCCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHHH--HHHcCCCEEEEECC
Confidence 222222 466655 5689999999999999998874 9999986532 1122222222 24689999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccch
Q 019509 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKR 230 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~-sl~~~~~~ 230 (340)
++ +|++|.++.++++|... +..+++|+||+ +++.+.|-++||. ++.+.|- |...
T Consensus 162 GG---GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr---- 233 (1143)
T TIGR01235 162 GG---GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR---- 233 (1143)
T ss_pred CC---CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc----
Confidence 44 46899999999887542 35799999996 4788999999775 2233332 1110
Q ss_pred hhhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019509 231 ELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fP 308 (340)
+ +.... .. .++ .+++ ...+.+.++|.+++++||..-+| ||++++.+ | ++|++|||.-+
T Consensus 234 --r--------~qk~i--e~-aPa~~L~~-----e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRi 293 (1143)
T TIGR01235 234 --R--------HQKVV--EV-APAPYLSR-----EVRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRI 293 (1143)
T ss_pred --c--------CceEE--EE-eCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCC
Confidence 0 00000 00 000 1111 12356899999999999977665 99999753 3 69999999988
Q ss_pred CCC
Q 019509 309 GYG 311 (340)
Q Consensus 309 g~~ 311 (340)
+..
T Consensus 294 qve 296 (1143)
T TIGR01235 294 QVE 296 (1143)
T ss_pred Ccc
Confidence 744
No 57
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.43 E-value=9.8e-12 Score=137.06 Aligned_cols=234 Identities=17% Similarity=0.234 Sum_probs=147.6
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCC-------C-----------------CCCCccEEEEccCchhhHH---HHH-H-HH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEWCK---IIE-D-YR 94 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l-------~-----------------~q~~~DvilhK~t~~~~~~---~l~-~-~~ 94 (340)
....+.+++++.|++++.+|.+... . ....+|+|++=+....... .+. + ..
T Consensus 29 sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~L 108 (1068)
T PRK12815 29 SGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGIL 108 (1068)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHH
Confidence 3445788999999999999975421 0 1235788887443332211 111 1 22
Q ss_pred HhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 95 QKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 95 ~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
+ ..|+.++ -+++++..+.||..+.+.|.++ |||+|++..+. +.++..+ ....++||+|+||..+.
T Consensus 109 e-~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~-s~ee~~~--~~~~igyPvVVKP~~g~--- 174 (1068)
T PRK12815 109 E-QYGVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVT-SVEEALA--FAEKIGFPIIVRPAYTL--- 174 (1068)
T ss_pred H-HCCCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeC-CHHHHHH--HHHHcCCCEEEEECcCC---
Confidence 2 3466664 6789999999999999999974 99999999985 3322222 22468999999998633
Q ss_pred cceeeEEEeChhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCccchhhhccceeee
Q 019509 174 KSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFR 240 (340)
Q Consensus 174 ~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~ 240 (340)
++.++.++.|+++|... ..++++||||+ | ..+-|-|++|. +..+. +..+++.....+ |
T Consensus 175 gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~t--G--- 245 (1068)
T PRK12815 175 GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHT--G--- 245 (1068)
T ss_pred CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEEE--eceecccccccC--C---
Confidence 46889999999988653 14799999995 6 57888888653 33221 111111101100 0
Q ss_pred cccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 241 FPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
+.+. . .++ .++. .....++++|.++.++||+. .+.||+.++.++ +++||+||| |.+.+..
T Consensus 246 -~s~~----v-~Pa~~l~~-----~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~-g~~~ViEIN--PR~~~s~ 307 (1068)
T PRK12815 246 -DSIV----V-APSQTLTD-----DEYQMLRSASLKIISALGVVGGCNIQFALDPKS-KQYYLIEVN--PRVSRSS 307 (1068)
T ss_pred -ceEE----E-ecCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEECCC-CcEEEEEEe--cCcccch
Confidence 0000 0 010 1110 01245899999999999993 456999987533 379999999 5554433
No 58
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.42 E-value=6.4e-12 Score=126.54 Aligned_cols=191 Identities=14% Similarity=0.136 Sum_probs=119.8
Q ss_pred HHHHHHhCCCeee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCC-CChhhHHHhhCCCCcEEEecC
Q 019509 90 IEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPL 167 (340)
Q Consensus 90 l~~~~~~~p~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~-~~~~~~l~~~~l~~PvVvKP~ 167 (340)
+|..++. .|+++ .=++.++..|+||..+.+++.+ .|||+|++..+..+. +.+........++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~-------aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANE-------AGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 4555543 46666 7778999999999999999886 499999998763221 111111112249999999998
Q ss_pred CCCCCCcceeeEEEeChhhhhcc-----C-CCeEEEecccCCCeEEEE--EEECCE-EEEE-EeecCCCccchhhhc-cc
Q 019509 168 VVDGSAKSHELFLAYDRFSLSEL-----E-PPMLLQEFVNHGGILFKI--YIIGET-IKVV-RRFSLPNVSKRELAK-VV 236 (340)
Q Consensus 168 ~a~Gs~~sh~m~iv~~~~~L~~l-----~-~p~v~QEfI~h~G~~~KV--~ViG~~-v~~~-~R~sl~~~~~~~~~~-~~ 236 (340)
. |+ .|+|+.+|.++++|.++ . ..+++|+||+ |+.+-| ++.++. +... .+..++.. +... ..
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr~ 261 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYRG 261 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEccC
Confidence 5 33 37999999999998754 2 3589999995 787766 544432 3221 12212210 0000 00
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhC----CcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG----LRLFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lG----l~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
+.+. ....++.+++. ..++++++|.++.++|+ -++++||++++.++| ++|++|||.=|+=
T Consensus 262 G~~~--------~~i~PA~L~~e-----i~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 262 GWCG--------NDIWPGALPPA-----QTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred CeEE--------EEEccCCCCHH-----HHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 1100 00012222211 23568999999999993 455679999974333 7999999987764
No 59
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.42 E-value=2.5e-11 Score=121.98 Aligned_cols=179 Identities=13% Similarity=0.180 Sum_probs=112.6
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEe-cCCCChhhHHHhhCCCCcEEEecCCCCCCCcc
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~s 175 (340)
-|++++ .++++++.++||..+.+.|.++ |||+|++.... .+.+++.+. ...++||+|+||..++ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~~--~~~~~~P~VvKP~~g~---gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIAI--ARQIGYPVMLKASAGG---GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHHH--HHHhCCCEEEEeCCCC---CC
Confidence 456544 6689999999999999999974 89999873221 222222222 2468999999998743 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhccceee
Q 019509 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 176 h~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~~~ 239 (340)
+++.++.+.++|.+. ..++++||||+ +++.+.+.++++ ++.....+..+ .. .......
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~----~~~~~~~ 239 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQ----RRHQKVI 239 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-cc----ccccceE
Confidence 899999999887542 34799999996 345666655543 23322111100 00 0000000
Q ss_pred ecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 240 RFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
. ... ...+++ ...+.++++|.++.++||+. ++.+|++++.+ | ++||+|||.-++.
T Consensus 240 ~-----~~p----~~~~~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~~ 295 (450)
T PRK06111 240 E-----EAP----SPFLDE-----ETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQV 295 (450)
T ss_pred E-----ecC----CCCCCH-----HHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcCC
Confidence 0 000 000111 12356889999999999995 55599998743 3 5999999988864
No 60
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.39 E-value=5.2e-11 Score=119.62 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=140.1
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~ 123 (340)
.+.+.+.|++.+++++.+.++.++ ...+.+..++ .|++++ -+.++++.++||..+-+.|.
T Consensus 51 ~~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~ 111 (434)
T PLN02257 51 SAAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCD 111 (434)
T ss_pred HHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHH
Confidence 346888888888888776654322 1223333333 356655 67789999999999999999
Q ss_pred hccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------------
Q 019509 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------- 190 (340)
Q Consensus 124 ~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------- 190 (340)
+ +|||||++..+. +.+++.+. ...++||+|+||.. |+ .|.+|.++.+.+++.+.
T Consensus 112 ~-------~GIptp~~~~~~-~~~e~~~~--~~~~g~PvVVKp~~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~ 178 (434)
T PLN02257 112 K-------YKIPTAKYETFT-DPAAAKKY--IKEQGAPIVVKADG--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSA 178 (434)
T ss_pred H-------cCCCCCCeEEeC-CHHHHHHH--HHHcCCCEEEEcCC--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCC
Confidence 7 499999998875 33333332 23689999999984 32 57899999998876431
Q ss_pred CCCeEEEecccCCCeEEEEEEECC-E-EEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhH
Q 019509 191 EPPMLLQEFVNHGGILFKIYIIGE-T-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPL 268 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~ViG~-~-v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 268 (340)
..++++||||. |..+-|.++.| + ++... .+. ....+|+++...+.+. -+...|.. .++ ++.
T Consensus 179 ~~~vlIEefi~--G~E~Sv~~~~dG~~~~pl~----~~~------dhkr~~d~d~g~ntgg---mg~~sp~p-~l~-~~~ 241 (434)
T PLN02257 179 GSEVVVEEFLD--GEEASFFALVDGENAIPLE----SAQ------DHKRVGDGDTGPNTGG---MGAYSPAP-VLT-PEL 241 (434)
T ss_pred CCeEEEEECCC--CCEEEEEEEECCCcEEEEE----eee------ecccccCCCCCCCCCC---CeeEecCC-CCC-HHH
Confidence 25799999995 88998866533 2 22211 110 0012233333221110 00111110 011 222
Q ss_pred H----HHHHH---HHHHHhCCcEeE---EEEEEecCcCCeEEEEeccCCCCCCCcc----ccHHHHHHHHHHHHHhh
Q 019509 269 L----ERLAR---ELRHRLGLRLFN---IDMIREHGMRDVFYVIDINYFPGYGKMP----DYEHIFTDFLLSLEQSK 331 (340)
Q Consensus 269 ~----~~lA~---~~~~~lGl~l~G---vDvi~~~~~g~~~~ViEVN~fPg~~g~~----~~~~~l~~~l~~~i~~~ 331 (340)
. ++++. ++.++.|+.+.| +|++++...| ++||+|+|.-||...-. ....-|.+.+.+.+..+
T Consensus 242 ~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~ 317 (434)
T PLN02257 242 ESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGE 317 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCC
Confidence 2 23332 334577887666 7988862123 58999999999964222 22334555565555443
No 61
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.38 E-value=1.8e-12 Score=113.20 Aligned_cols=151 Identities=24% Similarity=0.322 Sum_probs=77.9
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-
Q 019509 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 190 (340)
Q Consensus 112 ~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l- 190 (340)
|.||+.+++.|.++ +|++|.+..... . ....+|+|+||..++| |.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~-~---------~~~~~~~viKp~~G~G---g~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSE-P---------EPIDGPWVIKPRDGAG---GEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EE-S---------S--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCcccccc-c---------cccCCcEEEEeCCCCC---CCCeEEECCchhhcccc
Confidence 68999999999974 899995444321 1 1237899999998554 5889999999888754
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCCh
Q 019509 191 EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPR 266 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 266 (340)
....++||||+ |.-+-+.++.+. +..+.|..+..-. ..|.|.- + . .+. ..+..
T Consensus 61 ~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~--------~~~~~~G----~-~-~~~-------~~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDD--------GRFRYCG----G-I-VPA-------DTPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEEE----E-E-ES-----------HH
T ss_pred ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhcccc--------ceeeecc----c-c-ccc-------CCchH
Confidence 33349999995 998888777543 3445555432100 0011100 0 0 011 11225
Q ss_pred hHHHHHHHHHHHHh-CCc-EeEEEEEEecCcCCeEEEEeccCCC
Q 019509 267 PLLERLARELRHRL-GLR-LFNIDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 267 ~~~~~lA~~~~~~l-Gl~-l~GvDvi~~~~~g~~~~ViEVN~fP 308 (340)
+++.++|.+++++| ||. ++|||+|.+. +++||||||-=|
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~---~~~~viEINPR~ 158 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD---GGPYVIEINPRF 158 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC---CcEEEEEEcCCC
Confidence 67999999999999 875 5589999875 368999999654
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.36 E-value=2.5e-11 Score=134.10 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=139.9
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC---------------------CC------------CCCccEEEEccCc-hhhHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPL---------------------SD------------QGPFDVVLHKLSG-MEWCKIIE 91 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l---------------------~~------------q~~~DvilhK~t~-~~~~~~l~ 91 (340)
-++.++|+++|+.++.++.+... .. .-.+|+|++-..- .+... +.
T Consensus 18 vri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~~~-~a 96 (1146)
T PRK12999 18 IRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPE-FA 96 (1146)
T ss_pred HHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccCHH-HH
Confidence 36888899999999877543211 00 1135666553210 11111 22
Q ss_pred HHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--EecCCCChhhHHHhhCCCCcEEEecCC
Q 019509 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (340)
Q Consensus 92 ~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~~PvVvKP~~ 168 (340)
+..++ .|+.++ .++++++.|.||..+.+.+.++ |||+|++.. +. +.+++.+ ....++||+|+||..
T Consensus 97 ~~~e~-~Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~--~a~~iGyPvVVKP~~ 165 (1146)
T PRK12999 97 RACAE-AGITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALE--FAEEIGYPIMLKASA 165 (1146)
T ss_pred HHHHH-cCCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECC
Confidence 22222 466644 6799999999999999999874 999976553 32 3222222 234689999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccch
Q 019509 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKR 230 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~-~~R~-sl~~~~~~ 230 (340)
++ +|++|.++.++++|... +.++++|+||+ +++.+-|-++||. +.. ..|- |...
T Consensus 166 Gg---GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr---- 237 (1146)
T PRK12999 166 GG---GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR---- 237 (1146)
T ss_pred CC---CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee----
Confidence 44 46899999999887542 35799999997 3566777777643 222 2221 1100
Q ss_pred hhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019509 231 ELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+ ...... .+....+++ ...+.+.++|.++.+++|+.-.| +|++++.+ | ++|+||||.-++
T Consensus 238 --r-~qk~ie---------~aP~~~L~~-----~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlq 298 (1146)
T PRK12999 238 --R-HQKVVE---------IAPAPGLSE-----ELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQ 298 (1146)
T ss_pred --c-CccEEE---------EcCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCC
Confidence 0 000000 000001111 12356889999999999997766 99999853 3 699999998876
Q ss_pred CC
Q 019509 310 YG 311 (340)
Q Consensus 310 ~~ 311 (340)
..
T Consensus 299 ve 300 (1146)
T PRK12999 299 VE 300 (1146)
T ss_pred Cc
Confidence 43
No 63
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.35 E-value=5.1e-11 Score=119.43 Aligned_cols=237 Identities=13% Similarity=0.137 Sum_probs=135.1
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChH-HHHHHhcCHHHHHHHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDV 122 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~-~si~~~~dR~~~~~~L 122 (340)
+.+.+.+.|++.+++++.+.++.++ .+-+.+..++ .|++++-|. .+.+.+.||..+-+.|
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~l 116 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSLM 116 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHHH
Confidence 4456777788777777666443321 1223222222 467776543 5778899999999999
Q ss_pred HhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------------
Q 019509 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------ 190 (340)
Q Consensus 123 ~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------ 190 (340)
.+ +|||+|++..+. +.+++.+. ...++||+|+||.. | ..|.||.++.+.+++.+.
T Consensus 117 ~~-------~gIpt~~~~~~~-~~~ea~~~--~~~~~~PvVVKp~~--~-~~gkGV~vv~~~eel~~a~~~~~~~~~~g~ 183 (426)
T PRK13789 117 KE-------AKIPTASYKTFT-EYSSSLSY--LESEMLPIVIKADG--L-AAGKGVTVATEKKMAKRALKEIFKDKKFGQ 183 (426)
T ss_pred HH-------cCCCCCCeEeeC-CHHHHHHH--HHhcCCCEEEEeCC--C-CCCCcEEEECCHHHHHHHHHHHHhhccccC
Confidence 97 499999998875 33333332 23579999999974 2 257899999999876541
Q ss_pred -CCCeEEEecccCCCeEEEEEEECCE--EEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC--C
Q 019509 191 -EPPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--P 265 (340)
Q Consensus 191 -~~p~v~QEfI~h~G~~~KV~ViG~~--v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ 265 (340)
...+|+||||. |..+-|.++.+. +++ +|-.. + ....|+.+...+.+. -+...|.. .++ .
T Consensus 184 ~~~~vlIEEfl~--G~E~Sv~~~~dg~~~~~-----lp~~~--d---~k~~~d~d~g~~tgg---mg~~~P~p-~~~~~~ 247 (426)
T PRK13789 184 SGNQVVIEEFME--GQEASIFAISDGDSYFL-----LPAAQ--D---HKRAFDGDQGPNTGG---MGAYCPAP-VITEAI 247 (426)
T ss_pred CCCeEEEEECcC--CeEEEEEEEECCCEEEE-----ccceE--e---cccccCCCCCCCCCC---ceEEeeCC-CCCHHH
Confidence 12699999995 899999888543 332 11110 0 001111111111000 01111110 011 0
Q ss_pred hhHH-HHHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCCCCcccc----HHHHHHHHHHHHHh
Q 019509 266 RPLL-ERLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY----EHIFTDFLLSLEQS 330 (340)
Q Consensus 266 ~~~~-~~lA~~~~~~l---Gl---~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~----~~~l~~~l~~~i~~ 330 (340)
.+++ ++++..+.++| |+ +++.+|++++. .| .+||+|+|.-||--.-+.. ..-|.+.+.+.+..
T Consensus 248 ~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g-~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g 321 (426)
T PRK13789 248 LQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EG-EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC-CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcC
Confidence 1223 23555555444 64 45668999974 23 5899999999984222111 23445555555544
No 64
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.33 E-value=9.4e-11 Score=116.94 Aligned_cols=179 Identities=10% Similarity=0.091 Sum_probs=111.2
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCc-EEEecCCCCCCCcc
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-vVvKP~~a~Gs~~s 175 (340)
.+++++ .++++++.++||..+.+.|.++ |||+|++..+. +.+++.+. ...++|| +|+||..+. +|
T Consensus 87 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~-~~~~~~~~--~~~~g~P~~VvKp~~~~---gg 153 (423)
T TIGR00877 87 AGIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFT-DPEEALSY--IQEKGAPAIVVKADGLA---AG 153 (423)
T ss_pred CCCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHH--HHhcCCCeEEEEECCCC---CC
Confidence 356654 6789999999999999999974 99999999885 33333332 2468999 999997633 56
Q ss_pred eeeEEEeChhhhhcc------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCccchhhhccceee
Q 019509 176 HELFLAYDRFSLSEL------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 176 h~m~iv~~~~~L~~l------------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~--~R~sl~~~~~~~~~~~~~~~ 239 (340)
.++.++.+.+++.+. ..++++||||+ |..|-|.++ |+.+... .+.-... +
T Consensus 154 ~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~------------~ 219 (423)
T TIGR00877 154 KGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRA------------L 219 (423)
T ss_pred CCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeec------------c
Confidence 899999999876541 24799999995 788888776 4443321 1110000 0
Q ss_pred eccc-ccccccccCCCCCCCCCCCCCC---hhHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 240 RFPR-VSSAAASADDADLDPGIAELPP---RPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 240 ~~~~-~~~~~~~~~~~~~~~~~~~~p~---~~~~~~lA~~~~~~lG------l~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.+.. ...++ .+...|.. .++. .+..++++.++.++|+ .+++.+|++++.+ ++||+|||.-+|
T Consensus 220 ~~~~~~~~g~----~~~~~p~~-~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~---g~~viEin~R~g 291 (423)
T TIGR00877 220 EGDKGPNTGG----MGAYSPAP-VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE---GPKVLEFNCRFG 291 (423)
T ss_pred cCCCCCCCCC----CceecCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC---CcEEEEEEccCC
Confidence 0000 00000 00111110 1111 1223456666666663 3567799999742 389999999998
Q ss_pred CC
Q 019509 310 YG 311 (340)
Q Consensus 310 ~~ 311 (340)
-.
T Consensus 292 ~~ 293 (423)
T TIGR00877 292 DP 293 (423)
T ss_pred Cc
Confidence 43
No 65
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.31 E-value=1.1e-10 Score=112.76 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=130.6
Q ss_pred ccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHH
Q 019509 74 FDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV 153 (340)
Q Consensus 74 ~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l 153 (340)
.|+++++.......++-.+|.+..-.+.+--+.+++..+.||..+++.+.+ .+|++|++..+. +.+++...
T Consensus 67 Idv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~-t~~el~~a- 137 (329)
T PF15632_consen 67 IDVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVR-TADELKAA- 137 (329)
T ss_pred CeEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeC-CHHHHHHH-
Confidence 355566655544445666777654434443668999999999999999997 489999999985 44443332
Q ss_pred HhhCCCCc---EEEecCCCCCCCcceeeEEEe-Chhhhhcc----------------------CCCeEEEecccCCCeEE
Q 019509 154 FEAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSEL----------------------EPPMLLQEFVNHGGILF 207 (340)
Q Consensus 154 ~~~~l~~P---vVvKP~~a~Gs~~sh~m~iv~-~~~~L~~l----------------------~~p~v~QEfI~h~G~~~ 207 (340)
.+.+++| +.+||..+. ++.|..++. +.+.++.+ -+|++++||++ |..|
T Consensus 138 -~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~--G~Ey 211 (329)
T PF15632_consen 138 -YEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP--GPEY 211 (329)
T ss_pred -HHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC--CCeE
Confidence 2346665 999999854 468899998 44444332 25799999995 8888
Q ss_pred EEEEEC--CEEE-EEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-
Q 019509 208 KIYIIG--ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR- 283 (340)
Q Consensus 208 KV~ViG--~~v~-~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~- 283 (340)
-|=|+. +++. ++.|+-.. . . ..+ ..++.+.++|.++++.+||+
T Consensus 212 SVD~l~~~G~viaaV~R~K~G-~-----~--------------------q~l-------~~~~~l~e~a~~l~~~~~l~g 258 (329)
T PF15632_consen 212 SVDCLADEGRVIAAVPRRKLG-R-----R--------------------QVL-------ENDEELIELARRLAEAFGLDG 258 (329)
T ss_pred EEEEEecCCEEEEEEEEEecC-c-----e--------------------eEE-------EECHHHHHHHHHHHHHhCCCc
Confidence 877774 4455 56776541 1 0 001 01355899999999999997
Q ss_pred EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 284 LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 284 l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+++|++..|. .| .++++|||.=|+
T Consensus 259 ~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 259 LFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred eEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 5589999864 34 699999998885
No 66
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.28 E-value=5.4e-10 Score=124.16 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=116.4
Q ss_pred CCeee-cChHHHHHHhcCHHHHHHHHHhccccCCCCccccCc-EEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcc
Q 019509 98 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~V-iDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~-~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~s 175 (340)
.|+++ -.++++++.+.||..+-+.+.++ |||+|+ +.++. +.+++.+ ....++||+|+||..++ +|
T Consensus 97 ~Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~--~a~~igyPvVVKP~~gg---GG 163 (1201)
T TIGR02712 97 AGIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALE--AAKEIGYPVMLKSTAGG---GG 163 (1201)
T ss_pred cCCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHH--HHHhcCCeEEEEECCCC---CC
Confidence 45544 46689999999999999998874 999855 65554 3322222 23468999999998743 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-Eee-cCCCccchhhhccce
Q 019509 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVVS 237 (340)
Q Consensus 176 h~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~-~R~-sl~~~~~~~~~~~~~ 237 (340)
.+|.++.++++|... +.++++||||+ +|+.+-|.+++|. +... .|- +... . +..
T Consensus 164 ~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr------~-~~k 235 (1201)
T TIGR02712 164 IGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR------R-NQK 235 (1201)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe------c-Ccc
Confidence 899999999887531 34699999997 4788888888653 3332 111 1100 0 000
Q ss_pred eeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCCC
Q 019509 238 VFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.+. . .+. .+++ ...+++.++|.++.++||..-++ +|++.+..++ ++||+|||.=++..
T Consensus 236 -----~ve----e-~Pap~l~~-----~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 236 -----VVE----E-TPAPNLPP-----ETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred -----EEE----E-cCCCCCCH-----HHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 000 0 000 0110 12356889999999999987554 9999975333 69999999888643
No 67
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.26 E-value=7.2e-10 Score=108.27 Aligned_cols=226 Identities=18% Similarity=0.256 Sum_probs=139.5
Q ss_pred HHHHHhCCCEEEEecCCCC----------------CC--------CCCCccEEEEccCchhhHHH---HHH-HH-HhCCC
Q 019509 49 EILARNKGISFVAIDQNRP----------------LS--------DQGPFDVVLHKLSGMEWCKI---IED-YR-QKHPE 99 (340)
Q Consensus 49 ~~~a~~~gi~~~~id~~~~----------------l~--------~q~~~DvilhK~t~~~~~~~---l~~-~~-~~~p~ 99 (340)
.++-++.|+.++.||.+-. +. .+...|+|++=+..+..... +.+ .. +++.=
T Consensus 22 c~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV 101 (400)
T COG0458 22 CKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGV 101 (400)
T ss_pred HHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCC
Confidence 3455778999999987531 11 13456888887776522111 211 11 12222
Q ss_pred eeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeE
Q 019509 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (340)
Q Consensus 100 v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~ 179 (340)
-+|..++++|+.+.||..+.+.++++ ++++| +.+.. ..+...+ ....++||+|+||..+- ++.+..
T Consensus 102 ~vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P-~~~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~ 167 (400)
T COG0458 102 EVVGSDPEAIEIAEDKKLFKEAMREI-------GIPVP-SRIAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGG 167 (400)
T ss_pred EEEecCHHHhhhhhhHHHHHHHHHHc-------CCCCC-ccccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCcee
Confidence 35678999999999999999999986 89999 44332 2222222 23568999999998844 457899
Q ss_pred EEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCccchhhhccceeeeccccccc
Q 019509 180 LAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (340)
Q Consensus 180 iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
+++|+++|..+ -.+++++|+|. ++..|.+-|+-|. +.+++ ++.|+++....+.+..
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc--~men~dp~gvhtgdsi--------- 235 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVC--NMENLDPMGVHTGDSI--------- 235 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEE--eCCcccccccccccee---------
Confidence 99999998764 24689999996 4556666665433 22222 2233322222211110
Q ss_pred ccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 248 AASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 248 ~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
...|.. ..+ -...++..+.++.+.||.. =..|++.++.+++ +|||||||.=++
T Consensus 236 -------~vapaq-tl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 236 -------TVAPAQ-TLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred -------eecccc-ccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 000100 000 0133567889999999988 1129999987654 899999996554
No 68
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.25 E-value=7.4e-10 Score=111.38 Aligned_cols=217 Identities=10% Similarity=0.058 Sum_probs=126.3
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDV 122 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L 122 (340)
+.+.+.+.|++.+++++..-++.++ ......+|.+ -|++++ .+.++++.+.||..|.+.|
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~--~Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLK--RGIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHH--CCCcEECCCHHHHHHhhCHHHHHHHH
Confidence 3446777888877776665333211 1233344443 367765 8899999999999999999
Q ss_pred HhccccCCCCccccCcEE-EEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeCh----hh-hh---c---c
Q 019509 123 ADLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR----FS-LS---E---L 190 (340)
Q Consensus 123 ~~~~~~~~~~~I~~P~~~-~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~----~~-L~---~---l 190 (340)
.+ ++||+|++. .+. +.++.... ...++||+|+||.. ++ .|.+|.++.+. ++ +. + .
T Consensus 114 ~~-------~gIptp~~~~~~~-~~~e~~~~--~~~~~~PvVVKP~~--~s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ER-------HNIPGNINFNACF-SEKDAARD--YITSMKDVAVKPIG--LT-GGKGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HH-------CCcCCCcccceeC-ChHHHHHH--HHhhCCCEEEEeCC--CC-CCCCeEEecCchhhHHHHHHHHHHHhCC
Confidence 97 499998554 443 22222221 23468999999976 33 56899999532 22 22 1 1
Q ss_pred CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC--
Q 019509 191 EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP-- 264 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~--~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 264 (340)
..++|+|||+ .|..|-|.++ |+.++.. .+.--+..+ ++.. ++-.-.++.++....-|. ++
T Consensus 181 ~~~viIEEfl--~G~E~Svd~~~dg~~~~~l~~~~d~~r~~~-~d~g--------p~tGgmG~~s~~~~~~p~---l~~~ 246 (435)
T PRK06395 181 DGVVLIEKKM--TGEEFSLQAFSDGKHLSFMPIVQDYKRAYE-GDHG--------PNTGGMGSISDRDFSLPF---LSKD 246 (435)
T ss_pred CCcEEEEeec--CCceEEEEEEEcCCeEEEecccceeeeccc-CCCC--------CccCCCccccCCCCCCCC---CCHH
Confidence 3579999999 4777765444 6665431 110000000 0000 000000111100000010 11
Q ss_pred ChhHHHHHHHHHHHHhCC------cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 265 PRPLLERLARELRHRLGL------RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 265 ~~~~~~~lA~~~~~~lGl------~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
..+++++++.++.++|+. +++.+++++.. ++++|||+|.-+|
T Consensus 247 ~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~---~gp~ViE~n~R~g 294 (435)
T PRK06395 247 APERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP---NGVKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC---CCcEEEEEeCCCC
Confidence 134568899999999994 55679999864 2489999998888
No 69
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.16 E-value=3.6e-10 Score=113.24 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=115.9
Q ss_pred CCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEe-cCCCChhhHHHhhCCCCcEEEecCCCCCCCcc
Q 019509 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~s 175 (340)
.++..|-| +++++++.||+.+-+++.+ +|||+|+...-- .+.++..+ ....++||||+||..++ +|
T Consensus 98 ~gl~fiGP~~~~i~~mgdK~~ar~~~~~-------aGVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~Gg---Gg 165 (449)
T COG0439 98 AGLTFIGPSAEAIRRMGDKITARRLMAK-------AGVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAAGG---GG 165 (449)
T ss_pred cCCeeeCcCHHHHHHhhhHHHHHHHHHH-------cCCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECCCC---Cc
Confidence 45777776 5778888899999999997 499999877210 01112222 23568899999998644 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCEE----EEEEee-cCCCccchhhhccce
Q 019509 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKRELAKVVS 237 (340)
Q Consensus 176 h~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~v----~~~~R~-sl~~~~~~~~~~~~~ 237 (340)
.||.+|.+.++|.+. ++.+++|+||.. .+-+=+-|+||.. ....|- |+... .+
T Consensus 166 ~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr------~q-- 236 (449)
T COG0439 166 RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRR------HQ-- 236 (449)
T ss_pred ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCC------cc--
Confidence 899999999988652 334999999984 4445677888773 334554 43211 00
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCCC
Q 019509 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
.+ ...+....+++ ...+.+-+.|.++++.+|-.-+| +.++.+. +| ++|++|+|.==+-
T Consensus 237 -----kv---ieeapsp~~~~-----e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlqv 295 (449)
T COG0439 237 -----KV---IEEAPSPLLTE-----ELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQV 295 (449)
T ss_pred -----ce---eeecCCCCCCH-----HHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEeccccc
Confidence 00 00000000100 01345778889999999988888 9999985 33 6899999975443
No 70
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.13 E-value=9.8e-10 Score=97.49 Aligned_cols=190 Identities=12% Similarity=0.160 Sum_probs=108.4
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
|++.|+..+.||=-...-|.++....+...+|.=.+.... +.. +. . ..-.||+|+| ++++- .+-|=.++.|
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~yp-nh~---em-~-s~~~fPvVvK--vG~~h-~G~GKvkv~n 71 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYP-NHR---EM-L-SAPRFPVVVK--VGHAH-AGMGKVKVDN 71 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEES-SGG---GG-C-S-SSSSEEEE--ESS-S-TTTTEEEE-S
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecC-Chh---hh-c-cCCCCCEEEE--Ecccc-CceeEEEEcc
Confidence 7899999999994222222222111112244444344332 111 11 1 2358999999 54432 2355669999
Q ss_pred hhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCC
Q 019509 184 RFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 256 (340)
Q Consensus 184 ~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (340)
...+.++ +.-+-++.||+ .-.|++|--||+++.+++|+|+.+ .|++|.|.--+
T Consensus 72 ~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~N~gsa~l--------------- 131 (203)
T PF02750_consen 72 QQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKANTGSAML--------------- 131 (203)
T ss_dssp HHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSSTTSSSEEE---------------
T ss_pred HHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccccccchhe---------------
Confidence 9887754 45578899995 477999999999999999999742 45655432111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccCCC-CCCC--ccccHHHHHHHHHHHH
Q 019509 257 DPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINYFP-GYGK--MPDYEHIFTDFLLSLE 328 (340)
Q Consensus 257 ~~~~~~~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~~~~~g~~~~ViEVN~fP-g~~g--~~~~~~~l~~~l~~~i 328 (340)
.+.+..+..+.-...+++.+ ||+++++|+|... +| +.||+|||... ++-| .++=...++|.+...+
T Consensus 132 ----Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds~m~L~g~~qeeDr~~I~dlV~~km 201 (203)
T PF02750_consen 132 ----EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDSSMPLIGEHQEEDRRLIADLVVAKM 201 (203)
T ss_dssp ----EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-TT----GGGHHHHHHHHHHHHHHHH
T ss_pred ----eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCCcccccchhHHHHHHHHHHHHHHHh
Confidence 12233456788889999999 9999999999875 45 78999999863 3332 2222456666665543
No 71
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.02 E-value=1.7e-08 Score=95.44 Aligned_cols=226 Identities=15% Similarity=0.215 Sum_probs=140.5
Q ss_pred HHHHHHHhCCCEEEEecCC--CCCC---------------------CCCCccEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 47 KLEILARNKGISFVAIDQN--RPLS---------------------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~--~~l~---------------------~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
.+.-.|.++|++++.+|-= .|-. ++...|.|++-+-. .....|.++.+ .|.-||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEA-I~td~L~elE~--~G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEA-IATDALVELEE--EGYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhh-hhHHHHHHHHh--CCceEc
Confidence 4666789999999999852 1111 12345555544322 23455666654 567788
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
=...+.+.++||...-++..+- -|+||-++..++ +.+++.+ ....++||+||||+. +| -+||=+++.+
T Consensus 103 P~ArAt~ltMnRegiRrlAAee------LglpTs~Y~fa~-s~~e~~~--a~~~iGfPcvvKPvM--SS-SGkGqsvv~~ 170 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEE------LGLPTSKYRFAD-SLEELRA--AVEKIGFPCVVKPVM--SS-SGKGQSVVRS 170 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHH------hCCCCccccccc-cHHHHHH--HHHHcCCCeeccccc--cc-CCCCceeecC
Confidence 8899999999996554444331 278888888875 2323333 345799999999998 44 4699999999
Q ss_pred hhhhhcc-----------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCC--c--cchhhhccceeeecccccccc
Q 019509 184 RFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPN--V--SKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 184 ~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~--~--~~~~~~~~~~~~~~~~~~~~~ 248 (340)
++++.+. ..-+++++||+- ||-+-.+ +.|..-++ + +.+ -+..+|.|.
T Consensus 171 ~e~ve~AW~~A~~g~R~~~~RVIVE~fv~f---d~EiTlL------tvr~~~~~~~Fc~PIG-Hrq~dgdY~-------- 232 (394)
T COG0027 171 PEDVEKAWEYAQQGGRGGSGRVIVEEFVKF---DFEITLL------TVRAVDGTGSFCAPIG-HRQEDGDYR-------- 232 (394)
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEecc---eEEEEEE------EEEEecCCCCcCCCcc-cccCCCChh--------
Confidence 9988753 345999999964 4433222 11111011 0 000 011112111
Q ss_pred cccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhC-CcEeEEEEEEecCcCCeEEEEeccCCCCCCCccc
Q 019509 249 ASADDADLDPGIAELP--PRPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lG-l~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 315 (340)
..|.|. +|. ..+..+.+|+++.++|| .++|||.+.+. ||+.++-||---|-=.|+--
T Consensus 233 -----ESWQP~--~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 233 -----ESWQPQ--EMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred -----cccCcc--ccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceEE
Confidence 012221 111 12346889999999996 68999999975 46899999999997666543
No 72
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.01 E-value=9.8e-10 Score=100.25 Aligned_cols=161 Identities=16% Similarity=0.246 Sum_probs=97.4
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEe-cCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc--
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 190 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-- 190 (340)
||....+++.++ +||+|+....- .+.++..+ ...+++||+++||..+. ++++|.++++.++|...
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 677778888875 89999887541 12222222 23468999999998644 46899999999998753
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEeec-CCCccchhhhccceeeecccccccccccCCC
Q 019509 191 -----------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRFS-LPNVSKRELAKVVSVFRFPRVSSAAASADDA 254 (340)
Q Consensus 191 -----------~~p~v~QEfI~h~G~~~KV~ViG~~---v-~~~~R~s-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (340)
+.++++++|+. +.+.+-|=|++|. + +...|-. .+. ++.+. .- .+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~------hs~ds-i~---------~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR------HSQDS-IE---------EAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE------TTEEE-EE---------EES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc------ccccc-ee---------Eeecc
Confidence 57999999997 3466777777653 2 2233321 110 00000 00 00001
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019509 255 DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 255 ~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.+++ ...+.+++.|.++++.+|..=.| |=++.+..+ +++||+|||..-+
T Consensus 132 ~L~~-----~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~-~~~y~lEvNpR~~ 181 (211)
T PF02786_consen 132 TLSD-----EERQKLREAAKKIARALGYVGAGTVEFAVDPDD-GEFYFLEVNPRLQ 181 (211)
T ss_dssp SS-H-----HHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTT-TEEEEEEEESS--
T ss_pred ccch-----HHHHHHHHHHHHHHHhhCeeecceEEEEEccCc-cceeeecccCCCC
Confidence 1111 01356889999999999998776 999998533 3899999997765
No 73
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.97 E-value=8e-08 Score=97.91 Aligned_cols=134 Identities=14% Similarity=0.172 Sum_probs=88.5
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~ 123 (340)
.+.+.+.|++.+++++.+.++.+ ..+.+....++ -|++++ .+.++.+.++||..|-+.|.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~------------------l~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEP------------------LFAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchH------------------HHHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 44678888888777766543321 11223233332 467654 78899999999998888888
Q ss_pred hccccCCCCccccC-cEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhh---------h----hc
Q 019509 124 DLNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS---------L----SE 189 (340)
Q Consensus 124 ~~~~~~~~~~I~~P-~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~---------L----~~ 189 (340)
+ ++||+| ++..+. +.+++.+.+ ..+ +|+|+||... +.|.+|.++.+.++ + ..
T Consensus 119 ~-------~gIpt~~~~~~~~-~~~ea~~~~--~~~-~PvVVKP~~~---aggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 K-------YSIPGRLRYKVFY-DVEEAAKFI--EYG-GSVAIKPARQ---AGGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred H-------cCcCCCccceEeC-CHHHHHHHH--hhc-CCEEEeeCCC---CCCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 7 499997 566654 333333322 223 6999999752 35789999999652 1 11
Q ss_pred ----------cCCCeEEEecccCCCeEEEEEEEC
Q 019509 190 ----------LEPPMLLQEFVNHGGILFKIYIIG 213 (340)
Q Consensus 190 ----------l~~p~v~QEfI~h~G~~~KV~ViG 213 (340)
....+|+||||. |..+-|.++.
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~ 216 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLT 216 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC--CeEEEEEEEE
Confidence 134799999995 8889887774
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.97 E-value=3.1e-09 Score=93.94 Aligned_cols=137 Identities=25% Similarity=0.323 Sum_probs=73.4
Q ss_pred ccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChh-hhhc--------cCCCeEEEecccCC-C
Q 019509 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSE--------LEPPMLLQEFVNHG-G 204 (340)
Q Consensus 135 ~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~-~L~~--------l~~p~v~QEfI~h~-G 204 (340)
-+|+|++.. +.+.+.+.+...+ . +|+||+.+.| +.++.++...+ .+.. -..|+++|+|++.= .
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~--~-~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG--D-IVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS--S-EEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC--C-EEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 369999875 5445555555444 2 9999999654 57888888742 2221 24689999999843 2
Q ss_pred eEEEEEEECCEEEE-EEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHh---
Q 019509 205 ILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL--- 280 (340)
Q Consensus 205 ~~~KV~ViG~~v~~-~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~l--- 280 (340)
-|.|+++++++... +.|.+. .++|+.|. .. ++...+ .+ +.+...++|.++...|
T Consensus 84 GDkRii~~nG~~~~av~R~P~----~gd~R~N~--------~~------Gg~~~~--~~--lt~~e~~i~~~i~~~L~~~ 141 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIPA----KGDFRSNL--------AA------GGSAEP--AE--LTEREREICEQIGPKLRED 141 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE------SS-S---G--------GG------TSCEEE--EE----HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCEEhHHeecCCC----CCCceeee--------cc------CCceee--cC--CCHHHHHHHHHHHHHHhhc
Confidence 28999999999764 455432 13555431 11 222111 11 2344577888777776
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCC
Q 019509 281 GLRLFNIDMIREHGMRDVFYVIDINYF 307 (340)
Q Consensus 281 Gl~l~GvDvi~~~~~g~~~~ViEVN~f 307 (340)
|+-++|+|+| + + ++.|||.+
T Consensus 142 Gl~f~GiDvi---g-~---~l~EiNvt 161 (173)
T PF02955_consen 142 GLLFVGIDVI---G-D---KLTEINVT 161 (173)
T ss_dssp T--EEEEEEE---T-T---EEEEEE-S
T ss_pred CcEEEEEecc---c-c---ceEEEecc
Confidence 8899999999 3 2 68899975
No 75
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.97 E-value=2.8e-09 Score=97.96 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=108.0
Q ss_pred CccEEEEccCch--h---hHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCC
Q 019509 73 PFDVVLHKLSGM--E---WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL 147 (340)
Q Consensus 73 ~~DvilhK~t~~--~---~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~ 147 (340)
.+|+-|.=...+ + ..+.+++|.+ +-| =+++||+.|.||+.++..|+. .+++|.|..+. +
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~-nLG----~S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-~-- 136 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVE-NLG----CSPRAIRVAADKRLTYKALRD--------AVKQPPTREWA-E-- 136 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhH-hhC----CCHHHHhHhhhHHHHHHHHhh--------hccCCCccccc-c--
Confidence 567655544422 1 2355666643 333 358999999999999999995 48899887542 1
Q ss_pred ChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhccCCCeEEEecccCCCeEEEE-EEECCEEEE--EEeecC
Q 019509 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKI-YIIGETIKV--VRRFSL 224 (340)
Q Consensus 148 ~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~G~~~KV-~ViG~~v~~--~~R~sl 224 (340)
..--.|+||..+||+ .++....+...+ +++||||+ |.-+-| ..+|+++.. +.|.-+
T Consensus 137 ----------~~~k~ViKp~dgCgg---e~i~~~~~~pd~------~i~qEfIe--G~~lSVSL~~GEkv~pLsvNrQfi 195 (307)
T COG1821 137 ----------EPKKYVIKPADGCGG---EGILFGRDFPDI------EIAQEFIE--GEHLSVSLSVGEKVLPLSVNRQFI 195 (307)
T ss_pred ----------CCceEEecccccCCc---ceeeccCCCcch------hhHHHhcC--CcceEEEEecCCccccceechhhh
Confidence 122489999998875 445544443332 89999996 554444 445777543 222210
Q ss_pred CCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhC--CcEeEEEEEEecCcCCeEEEE
Q 019509 225 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG--LRLFNIDMIREHGMRDVFYVI 302 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lG--l~l~GvDvi~~~~~g~~~~Vi 302 (340)
.+..+.-.+.++ ..|.. .+..+++.+.|.++.+.++ .+++|||++..+ .+|||
T Consensus 196 ------------~~~~~~~~y~gg-------~~pi~--he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvI 250 (307)
T COG1821 196 ------------IFAGSELVYNGG-------RTPID--HELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVI 250 (307)
T ss_pred ------------hhccceeeeccC-------cCCCC--cHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEE
Confidence 000111112111 11111 1224557788999999988 467799999862 58999
Q ss_pred eccCCCC
Q 019509 303 DINYFPG 309 (340)
Q Consensus 303 EVN~fPg 309 (340)
|||.-|.
T Consensus 251 EINpR~T 257 (307)
T COG1821 251 EINPRPT 257 (307)
T ss_pred EecCCCC
Confidence 9999886
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.94 E-value=4.1e-08 Score=92.45 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=114.7
Q ss_pred HhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCcc--ccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCC
Q 019509 95 QKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKV--RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (340)
Q Consensus 95 ~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I--~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs 172 (340)
++.+++++.|| ...||+.+++.|.+. ..+ -.|.|..+. +.+++.+.|...+ -+++||.. ||
T Consensus 4 k~~~~i~~~n~-----~~~~Kw~v~~~L~~~------~~l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~--Gs 66 (262)
T PF14398_consen 4 KKQKGIPFFNP-----GFFDKWEVYKALSRD------PELRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDN--GS 66 (262)
T ss_pred HhcCCCEEeCC-----CCCCHHHHHHHHHcC------CcchhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCC--CC
Confidence 46789999998 569999999999963 122 489999885 3344555444433 68999987 65
Q ss_pred CcceeeEEEeChhh----------------------hhc-----c-CCCeEEEecccCC---C--eEEEEEEECC---EE
Q 019509 173 AKSHELFLAYDRFS----------------------LSE-----L-EPPMLLQEFVNHG---G--ILFKIYIIGE---TI 216 (340)
Q Consensus 173 ~~sh~m~iv~~~~~----------------------L~~-----l-~~p~v~QEfI~h~---G--~~~KV~ViG~---~v 216 (340)
.+.++..+.-..+ |.. + ..++|+||.|+-. | .||||.|--+ .|
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 5667766655422 110 0 3489999999754 3 4999999943 34
Q ss_pred EE---EEeecCCCccchhhhccceeeecccccccccccCCC-CCCCCCCCCCChhHHH----HHHHHHHHHhCC--cEeE
Q 019509 217 KV---VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLE----RLARELRHRLGL--RLFN 286 (340)
Q Consensus 217 ~~---~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~----~lA~~~~~~lGl--~l~G 286 (340)
.+ +.|-..++ .+.|+ ++++|...... .+..........+.+. .+|..+.+.+|. .-+|
T Consensus 146 ~vtg~~~Rva~~~----~ivTN--------~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElG 213 (262)
T PF14398_consen 146 QVTGIVARVAKPG----SIVTN--------LSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELG 213 (262)
T ss_pred EEEEEEEEEcCCC----Cceec--------cCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEE
Confidence 43 56665443 11211 22211100000 0000000000123344 455555566674 6679
Q ss_pred EEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 287 IDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 287 vDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
+|+-+|. .| ++++||||.-|+-..+...
T Consensus 214 iDl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 214 IDLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 9999996 45 8999999999997766664
No 77
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.80 E-value=4.5e-07 Score=88.01 Aligned_cols=224 Identities=16% Similarity=0.156 Sum_probs=136.6
Q ss_pred HHHHHHhCCCEEEEecCCCCCCC-CCCccEEEEccCch-------------------hhHHHHHHHHHhCCCeeecChHH
Q 019509 48 LEILARNKGISFVAIDQNRPLSD-QGPFDVVLHKLSGM-------------------EWCKIIEDYRQKHPEVTILDPPD 107 (340)
Q Consensus 48 l~~~a~~~gi~~~~id~~~~l~~-q~~~DvilhK~t~~-------------------~~~~~l~~~~~~~p~v~ViDp~~ 107 (340)
+..+|.++|+.+..+|++..-.- |---+.+..-..+. .....+. +...+ +.|-=+++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~-~l~~~--~~v~p~~~ 92 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALE-KLAAS--VKVFPSPD 92 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHH-HHHhh--cCcCCCHH
Confidence 56788999999999998652221 11112222222211 1112222 33332 56667899
Q ss_pred HHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhh
Q 019509 108 AIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (340)
Q Consensus 108 si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L 187 (340)
+++...||+..-+.|.++ |++||++.+++ +.+++... ...++||.|+|... |.=.++|-.++.+.+++
T Consensus 93 ~l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~-~~~el~~~--~~~~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~ 160 (375)
T COG0026 93 ALRIAQDRLVEKQFLDKA-------GLPVAPFQVVD-SAEELDAA--AADLGFPAVLKTRR--GGYDGKGQWRIRSDADL 160 (375)
T ss_pred HHHHHhhHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHH--HHHcCCceEEEecc--ccccCCCeEEeeCcccc
Confidence 999999999988898874 99999999996 34344443 34688999999876 44578999999988765
Q ss_pred hcc------CCCeEEEecccCCCeEEEEEEECCE-EEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCC
Q 019509 188 SEL------EPPMLLQEFVNHGGILFKIYIIGET-IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 260 (340)
Q Consensus 188 ~~l------~~p~v~QEfI~h~G~~~KV~ViG~~-v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (340)
... ..-+|+++||+- .+.+-|.++.+. =.++..+..-|+. ..+.+.+... ++.+++
T Consensus 161 ~~~~~~~~~~~~~vlE~fV~F-~~EiSvi~aR~~~G~~~~yP~~eN~h------~~gIl~~sia--------Pa~i~~-- 223 (375)
T COG0026 161 ELRAAGLAEGGVPVLEEFVPF-EREISVIVARSNDGEVAFYPVAENVH------RNGILRTSIA--------PARIPD-- 223 (375)
T ss_pred hhhHhhhhccCceeEEeeccc-ceEEEEEEEEcCCCCEEEecccceee------ecCEEEEEEe--------cCcCCH--
Confidence 531 222399999975 344566666221 0011111111211 1122221111 111111
Q ss_pred CCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCC
Q 019509 261 AELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 261 ~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fP 308 (340)
..++..+++|.++.+.|+. +++||-+.+..+ | +++|.|+=--|
T Consensus 224 ---~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEiAPRv 267 (375)
T COG0026 224 ---DLQAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEIAPRV 267 (375)
T ss_pred ---HHHHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeeccCCC
Confidence 1234578999999999985 678899988753 3 79999987655
No 78
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.75 E-value=1.1e-06 Score=86.14 Aligned_cols=176 Identities=13% Similarity=0.221 Sum_probs=103.4
Q ss_pred CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 98 p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
-++++.=..++++...||..+-+.|.+ +|||+|+++ . +. ..+.||+|+||.. | .++++
T Consensus 107 ~~~p~~gn~~~l~~e~dK~~~k~~L~~-------aGIp~p~~~--~-~~---------~~i~~PvIVKp~~--g-~ggkG 164 (358)
T PRK13278 107 FKVPMFGNREILRWEADRDKERKLLEE-------AGIRIPRKY--E-SP---------EDIDRPVIVKLPG--A-KGGRG 164 (358)
T ss_pred CCCCcCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEe--C-CH---------HHcCCCEEEEeCC--C-CCCCC
Confidence 345565567899999999999999987 499999963 2 21 1257999999964 3 36799
Q ss_pred eEEEeChhhhhcc------------CCCeEEEecccCCCeEE--EEEEE--CCEEE--EEEeecCCCccchhhhccceee
Q 019509 178 LFLAYDRFSLSEL------------EPPMLLQEFVNHGGILF--KIYII--GETIK--VVRRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 178 m~iv~~~~~L~~l------------~~p~v~QEfI~h~G~~~--KV~Vi--G~~v~--~~~R~sl~~~~~~~~~~~~~~~ 239 (340)
+.++.+++++.+. ...+++||||. |..| -+|+. -+++. .+-|+-..|++ +.+
T Consensus 165 v~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d--------~~~ 234 (358)
T PRK13278 165 YFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYSPIKNRLELLGIDRRYESNID--------GLV 234 (358)
T ss_pred eEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEeccCCeEEEEeeceeeeeccc--------cee
Confidence 9999999877531 36799999995 6655 34554 35533 34444333321 122
Q ss_pred ecccccccc-----cccCCCCCCCCCCCCCChhHHHHHHHHHHHH----h-C--CcEeEEEEEEecCcCCeEEEEeccCC
Q 019509 240 RFPRVSSAA-----ASADDADLDPGIAELPPRPLLERLARELRHR----L-G--LRLFNIDMIREHGMRDVFYVIDINYF 307 (340)
Q Consensus 240 ~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~----l-G--l~l~GvDvi~~~~~g~~~~ViEVN~f 307 (340)
..+...+.. .....+.+.....+ ...+.+.+++.++.++ + | .+-|++|++++.+ + ..+|+|||.=
T Consensus 235 r~p~~~~~~~~~~p~~v~~Gn~P~~~re-sll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d-~-~~~V~Eis~R 311 (358)
T PRK13278 235 RIPAKDQLELGIDPTYVVVGNIPVVLRE-SLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDN-L-EIVVFEISAR 311 (358)
T ss_pred eccchhhhhcccCCceeEecceeccchH-hHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCC-C-CEEEEEEeCc
Confidence 211100000 00000111000011 1123455555555555 5 2 3455699999643 3 5899999987
Q ss_pred C
Q 019509 308 P 308 (340)
Q Consensus 308 P 308 (340)
+
T Consensus 312 ~ 312 (358)
T PRK13278 312 I 312 (358)
T ss_pred c
Confidence 7
No 79
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.1e-07 Score=90.81 Aligned_cols=220 Identities=11% Similarity=0.187 Sum_probs=134.1
Q ss_pred CccEEEEccCch------hhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCC
Q 019509 73 PFDVVLHKLSGM------EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS 146 (340)
Q Consensus 73 ~~DvilhK~t~~------~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~ 146 (340)
..|.||.|...- .....+.-+. ..|++.||++.++...+||--+..-|.++..+++...+|.=.+...- +-
T Consensus 155 kPdfVlirqhA~~mA~~~d~rslvig~q--yagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yP-nH 231 (488)
T KOG3895|consen 155 KPDFVLIRQHAFSMALNEDYRSLVIGLQ--YAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYP-NH 231 (488)
T ss_pred cCCEEEEcccchhhccccchHHHHHHHH--hcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecC-Cc
Confidence 347777775431 2233444444 46799999999999999996555555554444444455544343331 11
Q ss_pred CChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEE
Q 019509 147 LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVV 219 (340)
Q Consensus 147 ~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~ 219 (340)
+.+. ..-.||+||| .++|- -+-|-..|.|.++|.++ +.-.-+|-||+ .-.|+||=-||..+.++
T Consensus 232 ----K~m~-s~~tyPvVVk--vghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 ----KEML-SQPTYPVVVK--VGHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAY 302 (488)
T ss_pred ----hhhc-cCCCCcEEEE--ecccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHH
Confidence 1111 2346999999 44443 23455778888888765 34556888996 35689999999999999
Q ss_pred EeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCe
Q 019509 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDV 298 (340)
Q Consensus 220 ~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~~~~~g~~ 298 (340)
+|.|+. +.|++|.|.--..+++ + .+.-+.-...+.+.+ ||+++.||.+... .| +
T Consensus 303 mRtsIs----gnWKtNtGSamLEQIa-----------------m--seRyklwvdtcse~fGgldICav~alhsK-dG-r 357 (488)
T KOG3895|consen 303 MRTSIS----GNWKTNTGSAMLEQIA-----------------M--SERYKLWVDTCSEMFGGLDICAVKALHSK-DG-R 357 (488)
T ss_pred hhhhhc----cCcccCchHHHHHHHH-----------------H--HHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-h
Confidence 999985 2566664410000000 0 122344445555555 5899999999864 44 5
Q ss_pred EEEEeccC--CCCCC-CccccHHHHHHHHHHHHH
Q 019509 299 FYVIDINY--FPGYG-KMPDYEHIFTDFLLSLEQ 329 (340)
Q Consensus 299 ~~ViEVN~--fPg~~-g~~~~~~~l~~~l~~~i~ 329 (340)
=||+|||. .|=+. ..++-.+.+.+.+..++.
T Consensus 358 d~i~eV~d~smpliGeh~eeDrql~~~Lvvskma 391 (488)
T KOG3895|consen 358 DYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMA 391 (488)
T ss_pred hheeeeccccccccccchhHHHHHHHHHHHHHhh
Confidence 68999998 45454 333334555665555443
No 80
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.73 E-value=5.4e-08 Score=86.07 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=89.5
Q ss_pred CccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCCeE
Q 019509 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGIL 206 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G~~ 206 (340)
.|||||++..+. +.+++.+. ...++||+|+|+.. |.-.++|..++.+.+++.+. ..++|+|+||+. .+.
T Consensus 4 ~gip~~~~~~i~-~~~~l~~a--~~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~E 77 (172)
T PF02222_consen 4 LGIPTAPYATID-SLEDLEEA--AESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DRE 77 (172)
T ss_dssp TT--B-EEEEES-SHHHHHHH--HHHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEE
T ss_pred cCCCCCCeEEEC-CHHHHHHH--HHHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEE
Confidence 489999999996 33333332 34689999999875 33368999999999988763 578999999984 566
Q ss_pred EEEEEECCE---EEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-
Q 019509 207 FKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL- 282 (340)
Q Consensus 207 ~KV~ViG~~---v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl- 282 (340)
+-|.++.+. +..+ +..-|.. ..+.+.+.. .++.+++. ...+.+++|.++.+.|+.
T Consensus 78 iSvivaR~~~G~~~~y--p~~en~~------~~~il~~s~--------~Pa~i~~~-----~~~~a~~ia~~i~~~l~~v 136 (172)
T PF02222_consen 78 ISVIVARDQDGEIRFY--PPVENVH------RDGILHESI--------APARISDE-----VEEEAKEIARKIAEALDYV 136 (172)
T ss_dssp EEEEEEEETTSEEEEE--EEEEEEE------ETTEEEEEE--------ESCSS-HH-----HHHHHHHHHHHHHHHHTSS
T ss_pred EEEEEEEcCCCCEEEE--cCceEEE------ECCEEEEEE--------CCCCCCHH-----HHHHHHHHHHHHHHHcCcE
Confidence 777766322 2111 0001110 111111100 12222211 245678999999999974
Q ss_pred cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 283 RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 283 ~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
++|+|.+.+.. +|++.||.||-.=|-
T Consensus 137 Gv~~VE~Fv~~-~g~~v~vNEiaPRpH 162 (172)
T PF02222_consen 137 GVLAVEFFVTK-DGDEVLVNEIAPRPH 162 (172)
T ss_dssp EEEEEEEEEET-TSTEEEEEEEESS--
T ss_pred EEEEEEEEEec-CCCEEEEEeccCCcc
Confidence 67889999984 454599999976553
No 81
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.71 E-value=8.1e-07 Score=84.67 Aligned_cols=219 Identities=21% Similarity=0.172 Sum_probs=126.7
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEcc----------Cchhh-HHHHHHHHHhC---------------
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKL----------SGMEW-CKIIEDYRQKH--------------- 97 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~----------t~~~~-~~~l~~~~~~~--------------- 97 (340)
+.+-+++.|.+.|+++--++.=.|..-++.-++++--- .+..| .+.+..|..+.
T Consensus 20 ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~~ 99 (389)
T COG2232 20 NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALRT 99 (389)
T ss_pred cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeeccccccccc
Confidence 55668888999999887777654444444444443111 11222 12233332110
Q ss_pred -----CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCC
Q 019509 98 -----PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS 172 (340)
Q Consensus 98 -----p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs 172 (340)
-++.=.+|-..+..+-||..++..|..+ |+|.|.+.-++ .+. .-.+++|.||+.+.|.
T Consensus 100 ~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e--------~~~--~gekt~IlKPv~GaGG 162 (389)
T COG2232 100 SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE--------PLE--EGEKTLILKPVSGAGG 162 (389)
T ss_pred cCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh--------hhh--hcceeeEEeeccCCCc
Confidence 1122235655999999999999999876 67777443221 111 1246899999985543
Q ss_pred CcceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCccchhhhccceeeecccccccc
Q 019509 173 AKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 173 ~~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
+ +-++.-.++.. ..++++|||| .|+-+-|-+|++. ..++-+.-+ ++. ....+.|.|
T Consensus 163 --~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~~----~~~~~~f~Y------- 222 (389)
T COG2232 163 --L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DGL----RGEYSQFVY------- 222 (389)
T ss_pred --e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-ccc----cccccccee-------
Confidence 2 32222222222 3789999999 5999999999873 334444322 111 001122222
Q ss_pred cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCC
Q 019509 249 ASADDADLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l-~GvDvi~~~~~g~~~~ViEVN~fP 308 (340)
.+.+.|-..+ ..++++++|..+-..|||-- -|||+++.. . ++||||||--+
T Consensus 223 ----~GNlTP~~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~--gpyViEVNPR~ 274 (389)
T COG2232 223 ----KGNLTPFPYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-K--GPYVIEVNPRI 274 (389)
T ss_pred ----ccCcCCCcch--hhHHHHHHHHHHHHHhccccccccceEeec-C--CcEEEEecCcc
Confidence 2233331111 12568999999999999854 479999974 2 48999999443
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.70 E-value=2.9e-07 Score=89.71 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=94.1
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc--
Q 019509 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 190 (340)
Q Consensus 113 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-- 190 (340)
+||..++..|.+ +||++|++.. +. ..+.||+||||..|.|. -|.|+.++.|.++|...
T Consensus 125 ~dKk~~yk~L~~-------aGI~~Pk~~~---~p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEK-------AGIPYPKLFK---DP---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHH-------cCCCCceeec---Cc---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 455567777775 5999999885 21 24789999999875542 26899999999988643
Q ss_pred ---C---------CCeEEEecccCCCeEE--EEEEE--CCEE--EEEEeecCCCccchhhhccceeeecccccccc----
Q 019509 191 ---E---------PPMLLQEFVNHGGILF--KIYII--GETI--KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAA---- 248 (340)
Q Consensus 191 ---~---------~p~v~QEfI~h~G~~~--KV~Vi--G~~v--~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~---- 248 (340)
+ ..+++||||. |..| -+|+- -+++ ..+-||---|++ |..+.+...+..
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~d--------g~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNLD--------GFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeeccccccc--------cccccChhhhhhcccC
Confidence 1 2357999996 6544 45654 4533 333333222322 221111100000
Q ss_pred -cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhC-------CcEeEEEEEEecCcCCeEEEEeccC
Q 019509 249 -ASADDADLDPGIAELPPRPLLERLARELRHRLG-------LRLFNIDMIREHGMRDVFYVIDINY 306 (340)
Q Consensus 249 -~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lG-------l~l~GvDvi~~~~~g~~~~ViEVN~ 306 (340)
....-+.......+. ..+.+.+++.++.++++ .+-|.+|.+++.+ + .+||+|||.
T Consensus 255 p~~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 255 PRYIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred CceEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 000011111111111 24567888888888877 5666799888642 3 699999984
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.66 E-value=1.9e-06 Score=82.09 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=113.5
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEe-cC------CCChhhH--HHhhCCCCcEEEecCCCCCCCc
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KD------SLSIPDQ--VFEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~-~~------~~~~~~~--l~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
|+.+....+-||..+.+++.+ .||++|+.+... ++ ..+..+. +.......++|+||.. || .
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~-------~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD-------YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHH-------hcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 888999999999999999887 489999943311 10 1111111 1112234799999987 65 5
Q ss_pred ceeeEEEeChhh---------hh----ccC-CCeEEEecccCCC----------eEEEEEEE-C-CEE---EEEEeecCC
Q 019509 175 SHELFLAYDRFS---------LS----ELE-PPMLLQEFVNHGG----------ILFKIYII-G-ETI---KVVRRFSLP 225 (340)
Q Consensus 175 sh~m~iv~~~~~---------L~----~l~-~p~v~QEfI~h~G----------~~~KV~Vi-G-~~v---~~~~R~sl~ 225 (340)
++|+.++...++ +. .+. ..+++||+|.-.. -.+||.++ . +.+ .++.|-+-.
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 789988877652 11 111 2799999986441 17798877 3 232 346664311
Q ss_pred Cccchhhhccceee---ecccc-ccc-ccccCCCCC--CCC------CCCCCChhHHHHHHHHHHHHh-CCcEeEEEEEE
Q 019509 226 NVSKRELAKVVSVF---RFPRV-SSA-AASADDADL--DPG------IAELPPRPLLERLARELRHRL-GLRLFNIDMIR 291 (340)
Q Consensus 226 ~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~--~~~------~~~~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~ 291 (340)
......+.. .+.. +.... ... +....+... .|. ....|.=+++.++|.++++.+ ++.+.|.||.+
T Consensus 166 ~~~~DN~~~-Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvai 244 (285)
T PF14397_consen 166 GSGVDNFHQ-GGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAI 244 (285)
T ss_pred CCcccccCC-CCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEE
Confidence 111111111 1111 11110 000 000001111 121 124554456899999998665 79999999999
Q ss_pred ecCcCCeEEEEeccCC--CCCCCc
Q 019509 292 EHGMRDVFYVIDINYF--PGYGKM 313 (340)
Q Consensus 292 ~~~~g~~~~ViEVN~f--Pg~~g~ 313 (340)
+.. ++++||.|+. ||+.-.
T Consensus 245 t~~---Gp~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 245 TED---GPVLLEGNARWDPGLMIQ 265 (285)
T ss_pred cCC---CcEEEEeeCCCCCCcHhh
Confidence 853 3899999999 998743
No 84
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.55 E-value=2.4e-07 Score=87.16 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=103.6
Q ss_pred eeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCC-Ccc-ee
Q 019509 100 VTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS-AKS-HE 177 (340)
Q Consensus 100 v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs-~~s-h~ 177 (340)
|+. =+....+-+.+|=.+|..-.++ |+++|+|..+++..+. ....|.||+|+||-.+.|. .++ -.
T Consensus 101 v~l-p~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~-----~~~el~FPvILKP~mgg~~~~~araK 167 (415)
T COG3919 101 VPL-PDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDT-----LVDELTFPVILKPGMGGSVHFEARAK 167 (415)
T ss_pred CCC-CcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhh-----hhhheeeeEEecCCCCCcceeehhhh
Confidence 444 4477888888888888888876 8999999999732221 2346899999999864432 111 12
Q ss_pred eEEEeChhhhhcc---------CCCeEEEecccCCCeEEE---EEEECCEEEE--EEeecCCCccchhhhccceeeeccc
Q 019509 178 LFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFK---IYIIGETIKV--VRRFSLPNVSKRELAKVVSVFRFPR 243 (340)
Q Consensus 178 m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~K---V~ViG~~v~~--~~R~sl~~~~~~~~~~~~~~~~~~~ 243 (340)
...+.+.++++.. ...+|+|||||.+|.--. .++-.++-++ ..|+-.. |+ .
T Consensus 168 a~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq-------------yP--v 232 (415)
T COG3919 168 AFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ-------------YP--V 232 (415)
T ss_pred eeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc-------------CC--c
Confidence 3445555666532 346999999997765322 2333333221 2232110 00 0
Q ss_pred ccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 244 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+........+++....+-+-|+++-+.++-+ +..||+..|..+| .+.++|||--|+
T Consensus 233 ---------dfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 233 ---------DFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred ---------ccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 0011111233444444556666666665544 5569999997666 799999999996
No 85
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.53 E-value=5.7e-06 Score=82.71 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=112.7
Q ss_pred hCCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 96 KHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 96 ~~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~-P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
+..|+..|-| +.+|+-+.||...-+++.. ++||+ |-+--...+.+ .... ....++||+++|+..++
T Consensus 92 ~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~-------AgVp~vpG~~g~~qs~e-~~~~-~a~eIgyPvMiKa~~GG--- 159 (670)
T KOG0238|consen 92 EDAGITFIGPPPSAIRDMGDKSTSKQIMKA-------AGVPLVPGYHGEDQSDE-EAKK-VAREIGYPVMIKATAGG--- 159 (670)
T ss_pred HHcCCeEECCCHHHHHHhcchHHHHHHHHh-------cCCccccCcccccccHH-HHHH-HHHhcCCcEEEEeccCC---
Confidence 3467888876 5678888999877777775 36664 33222211111 1112 34679999999998644
Q ss_pred cceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCEEE----EEEee-cCCCccchhhhcc
Q 019509 174 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETIK----VVRRF-SLPNVSKRELAKV 235 (340)
Q Consensus 174 ~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~v~----~~~R~-sl~~~~~~~~~~~ 235 (340)
++.||-++.+++++.+. +..++++.||.. .|-+-|=|.||+.- ...|- |+. .+.+
T Consensus 160 GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCSvQ------RRnQ 232 (670)
T KOG0238|consen 160 GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCSVQ------RRNQ 232 (670)
T ss_pred CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccchh------hhhh
Confidence 36899999999887642 457999999984 56677778888732 22221 110 0000
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019509 236 VSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. + ......|. ++ ....+.+-|.++++++|-.-+| |.+|.|.. +.+|++|+|.-=.
T Consensus 233 -K------i-------iEEaPap~---l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~--~~FyFmEmNTRLQ 290 (670)
T KOG0238|consen 233 -K------I-------IEEAPAPN---LPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK--DNFYFMEMNTRLQ 290 (670)
T ss_pred -h------h-------hhcCCCCC---CCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC--CcEEEEEeeceee
Confidence 0 0 00000110 11 1345789999999999999999 99999873 3799999997543
No 86
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.43 E-value=3.7e-06 Score=79.97 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=35.9
Q ss_pred ccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc----cCCCeEEEecccCC----Ce-
Q 019509 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNHG----GI- 205 (340)
Q Consensus 135 ~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~----l~~p~v~QEfI~h~----G~- 205 (340)
.+|.|..+..+......... ..-.--+|+||.. |+ .+.|+.++.+.+++.+ ...++|+|+||..+ |+
T Consensus 42 ~~p~t~~l~~~~~~~~~~~~-~~~~~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYFE-KNPKNLWIVKPSN--GS-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHHH-TTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHHh-cCCCCEEEEeccc--cC-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 46777776432222222111 1111359999976 54 6799999999999885 46789999999875 65
Q ss_pred -EEEEEEE
Q 019509 206 -LFKIYII 212 (340)
Q Consensus 206 -~~KV~Vi 212 (340)
|+|+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 8899887
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.23 E-value=8.1e-06 Score=73.44 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=58.9
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcE-EEecCCCCCCCcceeeEEEeChhhhhc---
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPL-VAKPLVVDGSAKSHELFLAYDRFSLSE--- 189 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~Pv-VvKP~~a~Gs~~sh~m~iv~~~~~L~~--- 189 (340)
+|..+-+.+.+ ++|||+++..+. +.+++.+.+.. ..+|+ |+|+ +|.+.+.+|.|+.+.++..+
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViKa---dGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIKA---DGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEEE---SSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEcc---CCCCCCCEEEEeCCHHHHHHHHH
Confidence 46666677776 599999999885 55555555544 46788 9995 46777899999999865322
Q ss_pred -c---------CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019509 190 -L---------EPPMLLQEFVNHGGILFKIYII--GETIK 217 (340)
Q Consensus 190 -l---------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~ 217 (340)
+ ..++|+|||+ .|..+-++++ |+++.
T Consensus 69 ~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 69 EIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3579999999 5998877666 77754
No 88
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.22 E-value=6.2e-05 Score=74.41 Aligned_cols=139 Identities=18% Similarity=0.287 Sum_probs=101.0
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHH-hcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKH-LHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~-~~dR~~~~~~L~ 123 (340)
.+.+++.|++.+++++.|-|+.||.. -....|.+ .|++|.=|.....+ =.+|..+-..+.
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 35799999999999999999987762 22333433 47788887755444 467877778888
Q ss_pred hccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------------
Q 019509 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------- 190 (340)
Q Consensus 124 ~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------- 190 (340)
+ ++||++.+-+++ +.+++.+.+. ..+.|+|+|| +|-+.+.||.++.+.++-.+.
T Consensus 113 k-------~~IPta~y~~f~-~~e~a~ayi~--~~g~piVVKa---dGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~ 179 (428)
T COG0151 113 K-------YGIPTAEYEVFT-DPEEAKAYID--EKGAPIVVKA---DGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSA 179 (428)
T ss_pred H-------cCCCcccccccC-CHHHHHHHHH--HcCCCEEEec---ccccCCCCeEEcCCHHHHHHHHHHHHhhccccCC
Confidence 6 599999998886 5555555543 5789999995 466677899999998654331
Q ss_pred CCCeEEEecccCCCeEEEEEEE--CCEEE
Q 019509 191 EPPMLLQEFVNHGGILFKIYII--GETIK 217 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~Vi--G~~v~ 217 (340)
...+|++||+ +|..+-++++ |+.+.
T Consensus 180 g~~VVIEEfL--~GeE~S~~a~~DG~~v~ 206 (428)
T COG0151 180 GARVVIEEFL--DGEEFSLQAFVDGKTVI 206 (428)
T ss_pred CCcEEEEecc--cceEEEEEEEEcCCeEE
Confidence 1459999999 5887765554 76654
No 89
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.22 E-value=5.6e-05 Score=76.79 Aligned_cols=175 Identities=14% Similarity=0.203 Sum_probs=111.3
Q ss_pred CCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccc-cCcEEEEecCCCChhhHH-HhhCCCCcEEEecCCCCCCCc
Q 019509 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVR-VPRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 98 p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~-~P~~~~~~~~~~~~~~~l-~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
.|++.|-| +.+|+.+.||...-.++.+. |+| +|-+.= ..++..... ....++||+.+|...++ +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g---~~qd~~~~~~~A~eiGyPVlIKAsaGG---G 164 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHG---PIQDAAELVAIAEEIGYPVLIKASAGG---G 164 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCC---cccCHHHHHHHHHhcCCcEEEEeccCC---C
Confidence 67888876 57899999997766666653 665 454431 112221111 24579999999987533 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccchhhhccc
Q 019509 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 236 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~-sl~~~~~~~~~~~~ 236 (340)
+.||-++.+.+++.+. +.-++++.|+.. -|-+-+=|+||+ |+.-.|- |+. .+.+
T Consensus 165 GKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQ------RRhQ- 236 (645)
T COG4770 165 GKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQ------RRHQ- 236 (645)
T ss_pred CCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchh------hhcc-
Confidence 7899999999877542 467999999985 455677778777 3333432 221 0100
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019509 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.+- ..+..-.+++. ..+.+-+-|++++++.|-.=+| |-+|++.+ + ..|++|+|.-=.
T Consensus 237 ------KVI---EEAPaP~l~~~-----~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRLQ 294 (645)
T COG4770 237 ------KVI---EEAPAPFLTEE-----TREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRLQ 294 (645)
T ss_pred ------hhh---hcCCCCCCCHH-----HHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeeccee
Confidence 000 00000011110 1346788999999999999999 99999864 3 599999997544
No 90
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.08 E-value=6.4e-05 Score=78.89 Aligned_cols=173 Identities=18% Similarity=0.270 Sum_probs=110.8
Q ss_pred CCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEEEEecCCCChhhHH-HhhCCCCcEEEecCCCCCCCc
Q 019509 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 98 p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~-P~~~~~~~~~~~~~~~l-~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
.|+..|-| ++.+..+.||...-..-.+. +||+ |.+-- ..+...+.+ -..+.+||+++|-.+++ +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~~---~~~~~ee~~~fa~~~gyPvmiKA~~GG---G 170 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTDG---PIETIEEALEFAEEYGYPVMIKAAAGG---G 170 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCC---CcccHHHHHHHHHhcCCcEEEEEccCC---C
Confidence 67888776 68889999998654444442 5543 22110 011122211 13468999999988744 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEee-cCCCccchhhhccc
Q 019509 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVV 236 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~-sl~~~~~~~~~~~~ 236 (340)
++||-+|.++++|.+. +..++++.||. +.+-+-|=++||+ |+.+.|- |.. .+++
T Consensus 171 GRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQ------RRhQ- 242 (1149)
T COG1038 171 GRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQ------RRHQ- 242 (1149)
T ss_pred ccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchh------hccc-
Confidence 6999999999888653 46799999998 4566788899888 4455552 211 1110
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCC
Q 019509 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYF 307 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~f 307 (340)
..+- .+....++++ ...++.+-|.++++..|-.-+| +.++++.+ | ++|+||||--
T Consensus 243 -----KVVE----~APa~~L~~~-----~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNPR 298 (1149)
T COG1038 243 -----KVVE----VAPAPYLSPE-----LRDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNPR 298 (1149)
T ss_pred -----eeEE----ecCCCCCCHH-----HHHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecCc
Confidence 0000 0111122221 2346788999999999999999 99999864 4 6899999953
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.62 E-value=0.00038 Score=71.94 Aligned_cols=176 Identities=15% Similarity=0.223 Sum_probs=108.5
Q ss_pred CCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEE-EEecCCCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 97 HPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 97 ~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~-P~~~-~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
..|+..|-| ++-|..+.||+.--++-.+. |||+ |-|- -+. ..++..+. ....++|+|.|-..++
T Consensus 129 ~AGi~fiGPspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPit-t~~EA~eF--~k~yG~PvI~KAAyGG--- 195 (1176)
T KOG0369|consen 129 DAGIRFIGPSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPIT-TVEEALEF--VKEYGLPVIIKAAYGG--- 195 (1176)
T ss_pred hcCceEeCCCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCcc-cHHHHHHH--HHhcCCcEEEeecccC---
Confidence 357777765 67888999998755554443 5543 2110 010 11122332 2357899999976644
Q ss_pred cceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCccchhhhccc
Q 019509 174 KSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVV 236 (340)
Q Consensus 174 ~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~sl~~~~~~~~~~~~ 236 (340)
+++||-+|..-+++++. +..++++.|+.. -+-+-|-.+||+ ++.+.|--. + ..+
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCS--v---QRR--- 266 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCS--V---QRR--- 266 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccc--h---hhh---
Confidence 47999999998776542 567999999986 455788888887 444555311 0 011
Q ss_pred eeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019509 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fP 308 (340)
|+.- -..+....+++. ....+..-|.++++..|-.-+| +.+++|.. | ++|+||||.-=
T Consensus 267 -----HQKV--VEiAPA~~Lp~~-----vR~~~~~davklAk~vgY~NAGTvEFLvD~~-g-~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 267 -----HQKV--VEIAPAKTLPPE-----VRDAILTDAVKLAKHVGYENAGTVEFLVDQK-G-RHYFIEVNPRL 325 (1176)
T ss_pred -----hcce--eEecccccCCHH-----HHHHHHHHHHHHHHHhCcccCCceEEEEccC-C-CEEEEEecCce
Confidence 1100 000011112111 1345667899999999999999 99999864 4 68999999654
No 92
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.30 E-value=0.001 Score=71.09 Aligned_cols=259 Identities=20% Similarity=0.285 Sum_probs=149.8
Q ss_pred CCCCcEEEEEEecCCCcccccchH--HHHHHHhCCCEEEEecCCCC-CC-CCCCcc----------------------EE
Q 019509 24 LQPERLVVGYALTSKKKKSFLQPK--LEILARNKGISFVAIDQNRP-LS-DQGPFD----------------------VV 77 (340)
Q Consensus 24 ~~~~~~~VG~~~~~kK~~~~~~~~--l~~~a~~~gi~~~~id~~~~-l~-~q~~~D----------------------vi 77 (340)
.++..|+||=- -.|.|.. -++.-+++|..-+.++-+-. ++ +...+| -+
T Consensus 924 lGsGvYrIGSS------VEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLYFeeis~E~vmDiYe~E~~~G~ 997 (1435)
T KOG0370|consen 924 LGSGVYRIGSS------VEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLYFEEISYERVMDIYELENSEGI 997 (1435)
T ss_pred Ecccceecccc------eeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHhHhhhhhhhhhhhhhhccCCce
Confidence 33446666621 1466664 37778899998888875421 11 112222 22
Q ss_pred EEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhh
Q 019509 78 LHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEA 156 (340)
Q Consensus 78 lhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~ 156 (340)
|.-..++..-+..-..-+ .++.++ -+|+.|...-||+...+.|.++ ||..|.+-.+. +-+++.. -..
T Consensus 998 iis~GGQ~pnNiA~~L~r--~~~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt-~~~eA~~--F~~ 1065 (1435)
T KOG0370|consen 998 IISVGGQLPNNIALKLHR--NGVKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELT-SLEEAKK--FAE 1065 (1435)
T ss_pred EEEecCcCcchhhhHhHh--cCCeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhc-cHHHHHH--HHH
Confidence 222322211111111111 233333 4689999999999999999986 88899877664 2222222 235
Q ss_pred CCCCcEEEecCCC-CCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEEC--CEEEEEEeecC
Q 019509 157 GLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIG--ETIKVVRRFSL 224 (340)
Q Consensus 157 ~l~~PvVvKP~~a-~Gs~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG--~~v~~~~R~sl 224 (340)
.++||+++.|..- .| -.|.+++++++|+.. +.|+++-.||+ +++.+-|=.|+ +++.+ .--|-
T Consensus 1066 ~VgYP~lvRPSYVLSG----aAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~-haiSE 1139 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSG----AAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLV-HAISE 1139 (1435)
T ss_pred hcCCceEecccceecc----hhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEE-Eehhh
Confidence 7899999999532 23 369999999998864 57999999998 56666554443 22222 11121
Q ss_pred CCccchhhhccceeeecccccccccccCCCCC-CCCCCCCC--ChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEE
Q 019509 225 PNVSKRELAKVVSVFRFPRVSSAAASADDADL-DPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFY 300 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p--~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ 300 (340)
.+ .+.| ++++ ++.+ -|. ..+. ..+.+++++.+++++|..+ =|++-+|..+ |.+.
T Consensus 1140 -Hv------EnAG------VHSG-----DAtlv~Pp-q~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lk 1197 (1435)
T KOG0370|consen 1140 -HV------ENAG------VHSG-----DATLVLPP-QDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELK 1197 (1435)
T ss_pred -hh------hccc------ccCC-----ceeEeCCc-hhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEE
Confidence 11 1111 1111 1111 110 0111 1245899999999999986 4678888653 5799
Q ss_pred EEecc-----CCCCCCCccccHHHHHHHHHHHHHh
Q 019509 301 VIDIN-----YFPGYGKMPDYEHIFTDFLLSLEQS 330 (340)
Q Consensus 301 ViEVN-----~fPg~~g~~~~~~~l~~~l~~~i~~ 330 (340)
|||-| .||-..+.-++ -|.+...+.+..
T Consensus 1198 VIECN~RaSRSFPFvSKtlgv--dfi~~At~~i~g 1230 (1435)
T KOG0370|consen 1198 VIECNVRASRSFPFVSKTLGV--DFIALATRAIMG 1230 (1435)
T ss_pred EEEeeeeeeccccceehhcCc--hHHHHHHHHHhC
Confidence 99999 58877766555 344444444443
No 93
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.18 E-value=0.043 Score=51.06 Aligned_cols=182 Identities=16% Similarity=0.234 Sum_probs=100.4
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
|+-.-...|.||+..-.-+++.. .....|+..-+..+.++ +....|.-++|+||..+||+ ..++.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~----i~~~~Lp~~fViK~nhgsg~-----~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDD----IDFDSLPDKFVIKPNHGSGS-----NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhh----hhhhcCCCCEEEEEecCCCc-----EEEEeC
Confidence 33444567889988777776531 22345555544323222 23456778999999885543 344443
Q ss_pred hh-----h----hhc-----------------cCCCeEEEecccCC-C---eEEEEEEECCEEEEEEeecCCCccchhhh
Q 019509 184 RF-----S----LSE-----------------LEPPMLLQEFVNHG-G---ILFKIYIIGETIKVVRRFSLPNVSKRELA 233 (340)
Q Consensus 184 ~~-----~----L~~-----------------l~~p~v~QEfI~h~-G---~~~KV~ViG~~v~~~~R~sl~~~~~~~~~ 233 (340)
.. . +.. +.+-++++||+... | .|||+||.++++....--+-..- .
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~---~-- 150 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG---N-- 150 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC---C--
Confidence 21 1 111 13458999999987 4 59999999997543221111100 0
Q ss_pred ccceeee--cccccccccccCCCCCCCCCCCCC-ChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 234 KVVSVFR--FPRVSSAAASADDADLDPGIAELP-PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 234 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
.....|+ +..+.-.... . .....+.| .-++|.++|.++++- ..+.-||+-..+ +++|+=|+=.+||=
T Consensus 151 ~~~~~yd~dw~~l~~~~~~--~---~~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~---~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 151 HKRNFYDRDWNRLPFRSDY--P---PDEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD---GKIYFGELTFTPGA 220 (239)
T ss_pred eEEEEECcccCCCccccCC--C---CCCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC---CcEEEEeeecCCCC
Confidence 0011221 1111100000 0 00111122 235688899888886 557789999754 37999999999985
Q ss_pred CCcc
Q 019509 311 GKMP 314 (340)
Q Consensus 311 ~g~~ 314 (340)
.-.+
T Consensus 221 G~~~ 224 (239)
T PF14305_consen 221 GFEP 224 (239)
T ss_pred cCCC
Confidence 5333
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.08 E-value=0.0011 Score=65.71 Aligned_cols=88 Identities=22% Similarity=0.187 Sum_probs=60.3
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCC-CcEEEecCCCC-CCCcceeeEEEeChhhhhcc----
Q 019509 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVD-GSAKSHELFLAYDRFSLSEL---- 190 (340)
Q Consensus 117 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~PvVvKP~~a~-Gs~~sh~m~iv~~~~~L~~l---- 190 (340)
...++|.+ .|||||++.++. +.++..+. ...++ ||+|+||..-. |...+.++.++.+.+++.+.
T Consensus 7 ~aK~ll~~-------~GIpvp~~~~~~-~~~ea~~~--~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l 76 (386)
T TIGR01016 7 QAKQIFAK-------YGIPVPRGYVAT-SVEEAEEI--AAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKL 76 (386)
T ss_pred HHHHHHHH-------cCCCCCCceeeC-CHHHHHHH--HHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHH
Confidence 44456665 599999999885 33333322 23578 99999997321 23244589999888775431
Q ss_pred -C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019509 191 -E---------------PPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 191 -~---------------~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
. ..+++|||+++ |+.+-|.+++|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 77 LGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred hccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 1 14899999964 889988888886
No 95
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.89 E-value=0.0024 Score=63.37 Aligned_cols=90 Identities=21% Similarity=0.142 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCC-CCcEEEecCCC-CCCCcceeeEEEeChhhhhcc--
Q 019509 115 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-- 190 (340)
Q Consensus 115 R~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~~PvVvKP~~a-~Gs~~sh~m~iv~~~~~L~~l-- 190 (340)
.+.+.++|.+ +|||+|++.++. +.++..+. ...+ +||+|+||..- .|.+.+.+|.+..+.+++.+.
T Consensus 5 e~~ak~lL~~-------~gIpvp~~~~~~-~~~ea~~~--a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~ 74 (388)
T PRK00696 5 EYQAKELFAK-------YGVPVPRGIVAT-TPEEAVEA--AEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAK 74 (388)
T ss_pred HHHHHHHHHH-------cCCCCCCCeeeC-CHHHHHHH--HHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHH
Confidence 4455566775 599999999885 44333332 2357 89999999642 234466799999888776431
Q ss_pred ----C-----------C---CeEEEecccCCCeEEEEEEECCE
Q 019509 191 ----E-----------P---PMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 191 ----~-----------~---p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
. . .+++|+|+++ |..+-+.+..|.
T Consensus 75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~ 116 (388)
T PRK00696 75 QILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDR 116 (388)
T ss_pred HhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcC
Confidence 0 1 2899999964 788888888776
No 96
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.45 E-value=0.012 Score=59.45 Aligned_cols=151 Identities=22% Similarity=0.316 Sum_probs=94.4
Q ss_pred cccchHHHHHHHhCCCEEEEecCCCCCCC--------CCCccEEEEccCchhh-------HHHHHHHHHhCCCeeecChH
Q 019509 42 SFLQPKLEILARNKGISFVAIDQNRPLSD--------QGPFDVVLHKLSGMEW-------CKIIEDYRQKHPEVTILDPP 106 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~id~~~~l~~--------q~~~DvilhK~t~~~~-------~~~l~~~~~~~p~v~ViDp~ 106 (340)
.-+.+.|.+..+++|++.++.|+++ |.. .-+.|+|.=|+.+.+. ...++.|.. ..+++++|+
T Consensus 199 ~~Ef~~f~~~f~~~G~~~vI~d~~~-L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~--~av~~vgsf 275 (445)
T PF14403_consen 199 LSEFEVFQRLFEEHGYDCVICDPRD-LEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRD--GAVCMVGSF 275 (445)
T ss_pred cchHHHHHHHHHHcCCceEecChHH-ceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhc--CCeEEecch
Confidence 3445589999999999999999976 432 2378999888877432 234566654 459999987
Q ss_pred HHHHHhcCHHHHHHHHHh-cc---cc-CCCC--ccccCcEEEEecC-------CCChhhH-HHhhCCCCcEEEecCCCCC
Q 019509 107 DAIKHLHNRQSMLQDVAD-LN---LS-DCNG--KVRVPRQMVITKD-------SLSIPDQ-VFEAGLKLPLVAKPLVVDG 171 (340)
Q Consensus 107 ~si~~~~dR~~~~~~L~~-~~---~~-~~~~--~I~~P~~~~~~~~-------~~~~~~~-l~~~~l~~PvVvKP~~a~G 171 (340)
.+ ..++||.. ...|.. .. +. ..+. .=-+|-|..+..+ ..++.+. +++. =-+|+||...-|
T Consensus 276 rs-~l~hnK~i-FaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r---~~lVLKP~D~Yg 350 (445)
T PF14403_consen 276 RS-QLLHNKII-FAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANR---DRLVLKPNDEYG 350 (445)
T ss_pred hh-hhhhhhHH-HHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhch---hcEEeccccccC
Confidence 65 56699953 344432 10 01 0000 1158999988641 1122222 2222 259999987554
Q ss_pred CCcceeeEEEeCh--hh----hhc-cCCCeEEEecccCC
Q 019509 172 SAKSHELFLAYDR--FS----LSE-LEPPMLLQEFVNHG 203 (340)
Q Consensus 172 s~~sh~m~iv~~~--~~----L~~-l~~p~v~QEfI~h~ 203 (340)
||||.+=-+. ++ |.+ ++.|+|+|||+.-.
T Consensus 351 ---g~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~ 386 (445)
T PF14403_consen 351 ---GKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPP 386 (445)
T ss_pred ---CCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 5888875543 33 333 36799999999754
No 97
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0092 Score=60.43 Aligned_cols=73 Identities=15% Similarity=0.359 Sum_probs=46.5
Q ss_pred ccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhccCCCeEEEecccCC------CeEEE
Q 019509 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG------GILFK 208 (340)
Q Consensus 135 ~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~------G~~~K 208 (340)
.+|++.++-.+.+++.+......-.. +||||.. |+.+-|+.++.....+.+ +.|+++|+||... -+|++
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEE
Confidence 58988888544444444333222222 8999874 345567888887766653 5689999998755 34666
Q ss_pred EEEE
Q 019509 209 IYII 212 (340)
Q Consensus 209 V~Vi 212 (340)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 6665
No 98
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.01 E-value=0.26 Score=41.53 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred cEEEecCCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhcc
Q 019509 161 PLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV 235 (340)
Q Consensus 161 PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~ 235 (340)
|+-+||.. .+ +.-.=.++...+.|... +.++++.|.++ =...||+||+.++++...+..- +.
T Consensus 3 ~~FiKP~~--~~-K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~-~~-------- 69 (130)
T PF14243_consen 3 PVFIKPPD--DD-KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG-DW-------- 69 (130)
T ss_pred CeEeCCCC--CC-CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC-Cc--------
Confidence 78899975 22 22111233334454432 56899999996 3778999999999988665421 10
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHH-HHhCCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 236 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR-HRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~-~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
... +..+.+......+. ....-.-|.+||=+.. +| +.+|||+|.+=+
T Consensus 70 -------------------~~~------~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 70 -------------------DLE------PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred -------------------ccC------CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 000 01222222222222 1556777889999874 34 689999997654
No 99
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.039 Score=56.40 Aligned_cols=56 Identities=13% Similarity=0.294 Sum_probs=43.2
Q ss_pred CCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------------CCCeEEEecccCC----Ce--EEEEEEECCE
Q 019509 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHG----GI--LFKIYIIGET 215 (340)
Q Consensus 157 ~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------~~p~v~QEfI~h~----G~--~~KV~ViG~~ 215 (340)
.-....|+||- +.+.+.|+.++.+.+.+.+. +..+++|-||.++ |. |+|.||+=.+
T Consensus 197 ~~~~~wIvKP~---~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPA---SKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEeccc---cccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 45789999975 44578999999988876554 3569999999987 44 6688888655
No 100
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.30 E-value=0.14 Score=57.75 Aligned_cols=187 Identities=12% Similarity=0.191 Sum_probs=110.1
Q ss_pred CeeecChHH-HHHHhcCHHHHHHHHHhcccc---CCCCccccCcEE------EEecC------CCChhhHH-HhhCCCCc
Q 019509 99 EVTILDPPD-AIKHLHNRQSMLQDVADLNLS---DCNGKVRVPRQM------VITKD------SLSIPDQV-FEAGLKLP 161 (340)
Q Consensus 99 ~v~ViDp~~-si~~~~dR~~~~~~L~~~~~~---~~~~~I~~P~~~------~~~~~------~~~~~~~l-~~~~l~~P 161 (340)
+++.|-||. ++.-+.||....-.-+.+..+ -...+|.++... .+..+ ..+..+.+ +...+|||
T Consensus 162 ~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfP 241 (2196)
T KOG0368|consen 162 GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFP 241 (2196)
T ss_pred CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCc
Confidence 588888875 567788998776665554322 112344444332 11000 00011111 23569999
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhh
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL 232 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~ 232 (340)
+.+|-..++| +.|+-.+.+.++++.+ +.|+++-.-.. ++|-+-|=.++|++--+.--.-.+.+. ..
T Consensus 242 vMIKASEGGG---GKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfgRDCSi-QR 316 (2196)
T KOG0368|consen 242 VMIKASEGGG---GKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFGRDCSI-QR 316 (2196)
T ss_pred eEEEeccCCC---CcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeecccchH-HH
Confidence 9999776444 6899999999998875 45787777775 466677777777743221101112111 00
Q ss_pred hccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccC
Q 019509 233 AKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~ 306 (340)
+ |++- - ..-+..+.| ...-.+|++-|.++++..|--=+| |..+-...+| +||++|.|-
T Consensus 317 R--------hQKI--I-EEAPatIap----~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLELNP 375 (2196)
T KOG0368|consen 317 R--------HQKI--I-EEAPATIAP----PETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLELNP 375 (2196)
T ss_pred H--------HHHH--H-hhCCcccCC----HHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEecCc
Confidence 0 1100 0 000111111 112356899999999999999999 9999886555 899999995
No 101
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=95.01 E-value=0.022 Score=52.49 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCC--CcceeeEE-EeChhhhhcc
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGS--AKSHELFL-AYDRFSLSEL 190 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs--~~sh~m~i-v~~~~~L~~l 190 (340)
+-....++|.. .||++|++.++. +.++..+ ....++||+++|-..++=. +...+|.+ +.+++++++.
T Consensus 11 ~e~e~~~lL~~-------yGI~~~~~~~~~-~~~ea~~--~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a 80 (222)
T PF13549_consen 11 TEAEAKELLAA-------YGIPVPPTRLVT-SAEEAVA--AAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREA 80 (222)
T ss_dssp -HHHHHHHHHT-------TT------EEES-SHHHHHH--HHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHH
T ss_pred CHHHHHHHHHH-------cCcCCCCeeEeC-CHHHHHH--HHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHH
Confidence 33466677775 599999999985 3333322 2346899999997654311 13345666 6677665431
Q ss_pred ----------------CCCeEEEecccCCCeEEEEEEECCE
Q 019509 191 ----------------EPPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 191 ----------------~~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
-..+++|+.+++.|..+-|.+.-|-
T Consensus 81 ~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 81 FERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 1258999999877888877666553
No 102
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=93.05 E-value=3.6 Score=42.96 Aligned_cols=138 Identities=14% Similarity=0.217 Sum_probs=90.3
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHH-HHHHhcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~-si~~~~dR~~~~~~L~ 123 (340)
..++.+.|++++|.++.+-|+.||..- +.+ .+. .-|+++.-|.. +.+.=.+|..+-..+.
T Consensus 57 ~~ala~f~~e~~I~lVvvGPE~PL~~G---------l~~--------~l~--~~gi~~FGPs~~aAqlE~sK~fsK~fm~ 117 (788)
T KOG0237|consen 57 FEALASFCKEHNINLVVVGPELPLVAG---------LAD--------VLR--SAGIPCFGPSKQAAQLEASKNFSKDFMH 117 (788)
T ss_pred HHHHHHHHHHcceeEEEECCchhhhhh---------hhh--------hhh--ccCcceeCchHHHHHhhhhHHHHHHHHH
Confidence 447899999999999999999988741 011 111 13355555543 3333345555555666
Q ss_pred hccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhh-hhcc------------
Q 019509 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS-LSEL------------ 190 (340)
Q Consensus 124 ~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~-L~~l------------ 190 (340)
+ ++|||-.+..+. +.+++...+.. .--+++|+| |+|-+-+.++.+..+.++ ++.+
T Consensus 118 r-------~~IPTA~y~~ft-~~e~a~sfi~~-~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~A 185 (788)
T KOG0237|consen 118 R-------HNIPTAKYKTFT-DPEEAKSFIQS-ATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSA 185 (788)
T ss_pred h-------cCCCcceeeeeC-CHHHHHHHHHh-CCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccc
Confidence 5 599999888775 44444444332 223789999 888888899999988654 3322
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE
Q 019509 191 EPPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
...++++||.. |-...++..=|-
T Consensus 186 G~tvViEE~LE--GeEvS~laftDG 208 (788)
T KOG0237|consen 186 GKTVVIEELLE--GEEVSFLAFTDG 208 (788)
T ss_pred cceEehhhhcC--cceEEEEEEecC
Confidence 35689999995 777776665444
No 103
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=92.00 E-value=4.7 Score=40.42 Aligned_cols=178 Identities=18% Similarity=0.275 Sum_probs=99.8
Q ss_pred EEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC-CCCCC---------CccEEEEccCchhhHHHHHHHHH--
Q 019509 29 LVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP-LSDQG---------PFDVVLHKLSGMEWCKIIEDYRQ-- 95 (340)
Q Consensus 29 ~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~~q~---------~~DvilhK~t~~~~~~~l~~~~~-- 95 (340)
+.+. ++.. .-.......=|.+.|++.|++...+++..- +.+.| +.|++ -|+..-+|... .+|..
T Consensus 177 ~~~~-~~~d~~~ED~~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~l-fKlyPwE~~~~-e~~~~~l 253 (397)
T PHA02117 177 GCLN-IVATGQVEDFVTIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMC-FKLYPWEWMME-DEFSAEI 253 (397)
T ss_pred eEEE-EeCCCchhHHHHHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeee-eecccHHHHhh-Ccchhhh
Confidence 4444 3344 334444554578899999998888776541 11222 23333 35444333211 12221
Q ss_pred hCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCC-CcEEEecCCCCCCCc
Q 019509 96 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAK 174 (340)
Q Consensus 96 ~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~PvVvKP~~a~Gs~~ 174 (340)
...++.+|||+-++. +.|| .++.+|-++.. ++.--.|.+. +.+..... ...++ -..|.||+. |- +
T Consensus 254 ~~~~~~~ieP~wk~l-lsnK-alLalLW~l~p---~hp~LLpay~----~~d~~~~~--~~~~~~~~yV~KPi~--gR-E 319 (397)
T PHA02117 254 LVSQTRFIEPAWKMM-LSNK-GLLALLYERYP---DCPWLVPAYV----EDDFDREN--LFTLENPKYVSKPLL--SR-E 319 (397)
T ss_pred hhCCcEEechhHHhH-hccH-HHHHHHHHhcC---CCcccccccc----cccccccc--hhccccCCEEeccCC--Cc-C
Confidence 135699999987765 4899 66777776522 1222333222 11100000 00011 149999998 54 6
Q ss_pred ceeeEEEeChhhhhcc-----CCCeEEEecccCC---Ce--EEEEEEECCEEE-EEEeec
Q 019509 175 SHELFLAYDRFSLSEL-----EPPMLLQEFVNHG---GI--LFKIYIIGETIK-VVRRFS 223 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~---G~--~~KV~ViG~~v~-~~~R~s 223 (340)
+.+|.|+.+-..+... +.++|+|+|++=+ |. .+=+++|||+.. +..|.+
T Consensus 320 G~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~ 379 (397)
T PHA02117 320 GNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIRED 379 (397)
T ss_pred CCCEEEEECCeEEeccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecC
Confidence 7889999764333222 4689999999853 33 567899999865 457765
No 104
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=91.52 E-value=0.75 Score=41.78 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=43.1
Q ss_pred CccccCcEEEEecCCCChhhHHHhhCCCC-cEEEecCCC-CCCCcceeeEEEeChhhhhcc-----C-------------
Q 019509 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----E------------- 191 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-PvVvKP~~a-~Gs~~sh~m~iv~~~~~L~~l-----~------------- 191 (340)
+|||+|++.++. +.++..+... .++. ++|+|+.+- +|--.+-++-++.+.++.... .
T Consensus 14 ~gi~vp~g~~a~-s~eea~~~~~--~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~ 90 (202)
T PF08442_consen 14 YGIPVPRGVVAT-SPEEAREAAK--ELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGE 90 (202)
T ss_dssp TT----SEEEES-SHHHHHHHHH--HHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEE
T ss_pred cCCCCCCeeecC-CHHHHHHHHH--HhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCC
Confidence 599999999996 3433333222 3444 689999443 444456778899998776542 0
Q ss_pred --CCeEEEecccCCCeEEEEEEE
Q 019509 192 --PPMLLQEFVNHGGILFKIYII 212 (340)
Q Consensus 192 --~p~v~QEfI~h~G~~~KV~Vi 212 (340)
.-++++|+++|..-.|=.+++
T Consensus 91 ~v~~vlvee~v~~~~E~Ylsi~~ 113 (202)
T PF08442_consen 91 KVNKVLVEEFVDIKREYYLSITL 113 (202)
T ss_dssp EE--EEEEE---CCEEEEEEEEE
T ss_pred EeeEEEEEecCccCceEEEEEEe
Confidence 137999999987555533344
No 105
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=89.69 E-value=2.7 Score=40.48 Aligned_cols=92 Identities=17% Similarity=0.331 Sum_probs=62.4
Q ss_pred CeEEEecccCC-CeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHH
Q 019509 193 PMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLER 271 (340)
Q Consensus 193 p~v~QEfI~h~-G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 271 (340)
-+++.+|.+-+ +..|||||-+++++++..+.. +.-. .+.. ... .....+.+
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~~~-~L~~---------------------~~~-----~I~~~I~~ 202 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NYYD-FLEE---------------------LKE-----EIRSKIQE 202 (299)
T ss_pred EEEEeccccCCccceEEEEEECCEEEEEecccc-cccH-HHHH---------------------HHH-----HHHHHHHH
Confidence 36888888765 889999999999888765554 3210 0000 000 01233444
Q ss_pred HH-HHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 272 LA-RELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 272 lA-~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
.. ..+...+.+.=|-|||.+... .++.++||+|-|-+-.+-
T Consensus 203 F~~~~I~~~~~~~~~v~DVyi~~~-~~~v~LID~NPf~~~Td~ 244 (299)
T PF07065_consen 203 FFEEHIKPKFPLDNYVFDVYITRD-KDKVWLIDFNPFGPRTDP 244 (299)
T ss_pred HHHHHHHhhCCCCCEEEEEEEcCC-CCeEEEEEecCCcccCcc
Confidence 44 567888999999999999864 248999999999985543
No 106
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.59 E-value=1.2 Score=37.13 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=44.4
Q ss_pred EEEEEecC--C-CcccccchHHHHHHHhCCCEEEEecCCCC-------------CC-----------------CCCCccE
Q 019509 30 VVGYALTS--K-KKKSFLQPKLEILARNKGISFVAIDQNRP-------------LS-----------------DQGPFDV 76 (340)
Q Consensus 30 ~VG~~~~~--k-K~~~~~~~~l~~~a~~~gi~~~~id~~~~-------------l~-----------------~q~~~Dv 76 (340)
.||+.+-| + |..+-..=.|..+|.++||++....+.+- +. ....||+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 46676665 2 33333444689999999999988776430 00 0146999
Q ss_pred EEEccCchh---h--HHHHHHHHHhCCCeeecChHHHHH
Q 019509 77 VLHKLSGME---W--CKIIEDYRQKHPEVTILDPPDAIK 110 (340)
Q Consensus 77 ilhK~t~~~---~--~~~l~~~~~~~p~v~ViDp~~si~ 110 (340)
|+.|--... + .-++-+.+ ++.|+.|||+|++++
T Consensus 82 vlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 999976532 1 12223333 357999999999986
No 107
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=89.01 E-value=1.4 Score=44.01 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=52.7
Q ss_pred CccccCcEEEEecCCCChhhHHHhhCCCCc-EEEecCC-CCCCCcceeeEEEeChhhhhcc----------------C--
Q 019509 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLV-VDGSAKSHELFLAYDRFSLSEL----------------E-- 191 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-vVvKP~~-a~Gs~~sh~m~iv~~~~~L~~l----------------~-- 191 (340)
.|||+|++.++. +.++..+ ....++|| +|+|..+ ..|-..+.+|.+..+.+++... .
T Consensus 15 yGIpvp~~~~~~-~~~ea~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~ 91 (392)
T PRK14046 15 FGVAVPRGALAY-SPEQAVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGK 91 (392)
T ss_pred cCCCCCCceEEC-CHHHHHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCC
Confidence 599999999985 4433333 23468995 5999743 3344567789888888775432 0
Q ss_pred --CCeEEEecccCCCeEEEEEEECCE
Q 019509 192 --PPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 192 --~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
.-+++|+++++ ++.+-+.+.-|+
T Consensus 92 ~v~~vlVe~~~~~-~~E~ylgi~~D~ 116 (392)
T PRK14046 92 PVQRVYVETADPI-ERELYLGFVLDR 116 (392)
T ss_pred eeeeEEEEEecCC-CcEEEEEEEECC
Confidence 12899999985 566655555443
No 108
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=88.26 E-value=7.3 Score=41.27 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 98 p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
+.+.+|+|+-++. +.|| .++-+|.++.. ++.--.|.+. ..+ .. + .+-..|.||+. |- ++.+
T Consensus 482 ~~~~~iEP~Wk~l-lsNK-aiLplLW~l~p---~Hp~LLpayf----e~d--~~-l----~~~~yV~KPi~--GR-EG~n 542 (619)
T PRK10507 482 PEVLVFEPLWTVI-PGNK-AILPVLWSLFP---HHRYLLDTDF----TVN--DE-L----VKTGYAVKPIA--GR-CGSN 542 (619)
T ss_pred CceEEEcccHHhh-cccH-HHHHHHHHhCC---CCcccccccc----cCC--cc-c----ccCCeEeccCC--Cc-CCCC
Confidence 6799999987765 4899 67788887532 1222233222 111 11 1 12249999998 54 6778
Q ss_pred eEEEeCh-hhhhcc-----CCCeEEEecccCC---Ce--EEEEEEECCEEEE-EEeec
Q 019509 178 LFLAYDR-FSLSEL-----EPPMLLQEFVNHG---GI--LFKIYIIGETIKV-VRRFS 223 (340)
Q Consensus 178 m~iv~~~-~~L~~l-----~~p~v~QEfI~h~---G~--~~KV~ViG~~v~~-~~R~s 223 (340)
|.|+.+. ..+.+. +.++|+|+|++=+ |. .+=+|+|||+... ..|.+
T Consensus 543 V~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 543 IDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred EEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 9999763 222221 4679999999854 22 5678999998764 46655
No 109
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=84.23 E-value=3 Score=41.35 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=49.8
Q ss_pred CccccCcEEEEecCCCChhhHHHhhCCC-CcEEEecCC-CCCCCcceeeEEEeChhhhhcc-----C------------C
Q 019509 132 GKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLV-VDGSAKSHELFLAYDRFSLSEL-----E------------P 192 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~PvVvKP~~-a~Gs~~sh~m~iv~~~~~L~~l-----~------------~ 192 (340)
.|||+|+..++. ..++..+. ...++ .|+|+|+.+ ++|--.+-++-++.+.++..+. . .
T Consensus 15 ~GiPvp~g~v~~-s~eea~~~--a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~ 91 (387)
T COG0045 15 YGIPVPPGYVAT-SPEEAEEA--AKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVN 91 (387)
T ss_pred cCCCCCCceeee-CHHHHHHH--HHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceee
Confidence 599999999986 33333332 23455 799999954 3444456689999998776542 1 1
Q ss_pred CeEEEecccCCCeEEEE
Q 019509 193 PMLLQEFVNHGGILFKI 209 (340)
Q Consensus 193 p~v~QEfI~h~G~~~KV 209 (340)
-++++|+++|.-..|=+
T Consensus 92 ~vlvee~~~~~~~E~Yl 108 (387)
T COG0045 92 KVLVEEAVDIIKKEYYL 108 (387)
T ss_pred EEEEEecCCCccceEEE
Confidence 37999999976544433
No 110
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=80.87 E-value=2.2 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=44.8
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc---
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--- 190 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l--- 190 (340)
+|..-+.+|.+ +||++|+-. ++++ .+.-|||||+..|- +++|-.++.+.+++.+-
T Consensus 124 ~~~~~~~lLek-------Agi~~P~~~---~~Pe---------eIdr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEK-------AGLRIPKKY---KSPE---------EIDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHH-------cCCCCCccc---CChH---------HcCCceEEecCCcc---CCceEEEEcCHHHHHHHHHH
Confidence 44455566665 499999654 2332 24459999987554 47999999999887542
Q ss_pred --C---------CCeEEEeccc
Q 019509 191 --E---------PPMLLQEFVN 201 (340)
Q Consensus 191 --~---------~p~v~QEfI~ 201 (340)
+ ..+.+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 1 2467888885
No 111
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.78 E-value=1.5 Score=44.33 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=46.5
Q ss_pred cccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhccCCCeEEEecccCC-------CeE
Q 019509 134 VRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHG-------GIL 206 (340)
Q Consensus 134 I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~-------G~~ 206 (340)
-.-|+++.+-.+..++.+... ...-|+||||.. | ..+.|++++.+...-..+.. .++||||-.+ -.|
T Consensus 203 ~fyp~sw~lPa~l~df~a~~~--~~KrtfivkpDs--g-aqg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd 276 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPASTE--IMKRTFIVKPDS--G-AQGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFD 276 (565)
T ss_pred cCCCccccCchHHHHHHHHHH--HhcccEEECCCC--C-CCCcceeeechhhhhhHHHH-HHHHHHhcccccccccceee
Confidence 357777766423333333322 234499999876 3 35678999977655444432 6788888543 357
Q ss_pred EEEEEECCE
Q 019509 207 FKIYIIGET 215 (340)
Q Consensus 207 ~KV~ViG~~ 215 (340)
+|||++=-.
T Consensus 277 ~rvy~likS 285 (565)
T KOG2158|consen 277 QRVYSLIKS 285 (565)
T ss_pred eeeeeeeec
Confidence 888887443
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=69.18 E-value=16 Score=36.96 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=45.1
Q ss_pred CccccCcEEEEecCCCChhhHHHh-hCCCC-cEEEecCCCC-CCCcceeeEEEeChhhhhcc-----CC-----------
Q 019509 132 GKVRVPRQMVITKDSLSIPDQVFE-AGLKL-PLVAKPLVVD-GSAKSHELFLAYDRFSLSEL-----EP----------- 192 (340)
Q Consensus 132 ~~I~~P~~~~~~~~~~~~~~~l~~-~~l~~-PvVvKP~~a~-Gs~~sh~m~iv~~~~~L~~l-----~~----------- 192 (340)
.|||+|+..++-.+.++..+.... ..|+. ++|+|+.+-. |--.+-+|-++.+.++..+. ..
T Consensus 23 ~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v 102 (423)
T PLN02235 23 AGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPI 102 (423)
T ss_pred CCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccE
Confidence 499999999882233333332111 12666 4699996543 33455678999998876543 11
Q ss_pred -CeEEEecccCC
Q 019509 193 -PMLLQEFVNHG 203 (340)
Q Consensus 193 -p~v~QEfI~h~ 203 (340)
-++++|+++|.
T Consensus 103 ~~vLVEe~v~i~ 114 (423)
T PLN02235 103 TTFIVEPFVPHD 114 (423)
T ss_pred eEEEEEecCCCc
Confidence 25788888875
No 113
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=66.74 E-value=5.3 Score=40.35 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=28.4
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCC---CCcEEEecCCC
Q 019509 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL---KLPLVAKPLVV 169 (340)
Q Consensus 117 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l---~~PvVvKP~~a 169 (340)
...++|.+ .|||+|+..++. +.++..+. ...+ ++|+|+|..+-
T Consensus 34 qaK~LL~~-------~GIpvp~~~va~-t~eea~~a--a~~l~~~~~pvVvKaqv~ 79 (422)
T PLN00124 34 QGAELMSK-------YGVNVPKGAAAS-SLDEVKKA--LEKMFPDEGEVVVKSQIL 79 (422)
T ss_pred HHHHHHHH-------cCCCCCCceeeC-CHHHHHHH--HHHhcccCCcEEEEEEec
Confidence 44466665 599999999885 33333222 2345 68999999753
No 114
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=65.91 E-value=3.5 Score=40.55 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=92.1
Q ss_pred cEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEE-----------ccCchhh--HHHHHHH
Q 019509 28 RLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLH-----------KLSGMEW--CKIIEDY 93 (340)
Q Consensus 28 ~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~Dvilh-----------K~t~~~~--~~~l~~~ 93 (340)
+.+++++... ........+-|...|.+.|++-..+-.+. +.-. -+-++. |+..=++ .+.+.+-
T Consensus 170 ~~~~~~s~~~D~~Ed~~tv~~LqD~a~~AG~et~fl~i~~-igl~--e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~ 246 (387)
T COG0754 170 RDRMGFSICQDTAEDRGTVQYLQDCAQEAGFETEFLYIDD-IGLG--EDGQFTDLDNQVIERLFKLYPWEDMLREELAQN 246 (387)
T ss_pred cCceEEEeecChhhhhhHHHHHHHHHHhcCcccceeeehh-cccC--ccceeecCCcchHhHHHhhcCHHHHHHHHHHHH
Confidence 4566664444 44444555557888888998877664433 1110 122222 2222111 1222222
Q ss_pred HHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 94 ~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
+ +.+++.+|+|+=.+ ++.|| .++-+|-+... ++.--.|.+. +..... ..+---|.||+. |-
T Consensus 247 l-~~~~~~~lEPaWk~-ilsNK-~lLplLW~~fP---nHp~LL~t~F----~~~~~~------~~~~~yv~KPl~--gR- 307 (387)
T COG0754 247 L-ENARTIFLEPAWKS-ILSNK-ALLPLLWERFP---NHPNLLPTYF----EPDDEE------KLGESYVRKPLF--GR- 307 (387)
T ss_pred h-cCCCcEEechhHHH-Hhccc-cHHHHHHHhCC---CCcccccccC----CCCccc------cchhhhhccccc--cc-
Confidence 2 46889999986554 45888 56677765311 1223333222 111111 111127999998 44
Q ss_pred cceeeEEEeC-hhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEE
Q 019509 174 KSHELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIK 217 (340)
Q Consensus 174 ~sh~m~iv~~-~~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~~v~ 217 (340)
++-++.|+.+ .+.+.+. +.++|+|||.+-+-..-..++||.-++
T Consensus 308 EGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v 357 (387)
T COG0754 308 EGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVV 357 (387)
T ss_pred cCCCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEE
Confidence 5678999988 4445554 356899999987755556666665443
No 115
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=65.62 E-value=1.9 Score=47.19 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=118.6
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCC--CCCC----------------------ccEEEEccCchhh---------HHHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLS--DQGP----------------------FDVVLHKLSGMEW---------CKII 90 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~--~q~~----------------------~DvilhK~t~~~~---------~~~l 90 (340)
+-..-+++-++.|+..+.|+|+-... .++- .|.|+.-...+.. ...+
T Consensus 399 SGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf 478 (1435)
T KOG0370|consen 399 SGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVF 478 (1435)
T ss_pred eHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccc
Confidence 33346778899999999999974322 1222 3444333332110 0122
Q ss_pred HHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 91 EDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 91 ~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
.+ +++.|+ -|.+.+...-||-...+.|.++ +.++-++...+ .-+...+ +...++||+|+....+
T Consensus 479 ~~-----~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~-sie~al~--aae~l~ypvivRaaya 543 (1435)
T KOG0370|consen 479 AQ-----YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVS-TIEEALE--AAERLGYPVIVRAAYA 543 (1435)
T ss_pred cc-----cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHh-HHHHHHH--HHHhcCcHHHHHHHHH
Confidence 33 333333 3567888888898888888764 33333333332 1111222 3467999999997665
Q ss_pred CCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCe-EEEEEEECCEEE-EEEeecCCCccchhhhccceeee
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGI-LFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFR 240 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~-~~KV~ViG~~v~-~~~R~sl~~~~~~~~~~~~~~~~ 240 (340)
-|. -|=....|+++|.++ .+.++++.=+. |+ .+-+=|+.|.+- |..--.+-|+++-.+.+.+...
T Consensus 544 lgg---lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk--GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiV- 617 (1435)
T KOG0370|consen 544 LGG---LGSGFANNEEELQDLAAQALALSPQILVEKSLK--GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIV- 617 (1435)
T ss_pred hcC---ccccccccHHHHHHHHhhccccCceeeehhhhc--cccceEEEEEeccccchhhhcCCcccCcceeeccceEE-
Confidence 443 334466899998875 23356655552 43 445556666532 2111123343322222111100
Q ss_pred cccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCC
Q 019509 241 FPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fP 308 (340)
.+....++. ..-..++..|.++-+.||.- =+.+-...+..+ -.|+|||||.-=
T Consensus 618 ---------vapsqtlsd-----~ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarL 671 (1435)
T KOG0370|consen 618 ---------VAPSQTLSD-----EEYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARL 671 (1435)
T ss_pred ---------EeeccccCh-----HHHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEE
Confidence 000001110 00124677788888888753 233555555433 379999999643
No 116
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=64.20 E-value=29 Score=29.58 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHH
Q 019509 26 PERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 26 ~~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~ 92 (340)
-...+|+..+.+ |-+... .|..++.++|..++.++.+..-...+ =+|+|+.|...... +++
T Consensus 37 l~gk~v~~lF~e~StRTR~---SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~---~~~ 110 (142)
T PF02729_consen 37 LKGKTVALLFFEPSTRTRL---SFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGA---LEE 110 (142)
T ss_dssp TTTCEEEEEESS--HHHHH---HHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHH---HHH
T ss_pred CCCCEEEEEecCCCchhhh---hHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchH---HHH
Confidence 345667766655 433333 48889999999999999654222211 28999999776633 444
Q ss_pred HHHhCCCeeecCh
Q 019509 93 YRQKHPEVTILDP 105 (340)
Q Consensus 93 ~~~~~p~v~ViDp 105 (340)
++ ++..+||||=
T Consensus 111 ~a-~~~~vPVINa 122 (142)
T PF02729_consen 111 LA-EHSSVPVINA 122 (142)
T ss_dssp HH-HHCSSEEEEE
T ss_pred HH-HhccCCeEcC
Confidence 43 3467999984
No 117
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=47.28 E-value=79 Score=30.98 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=47.3
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC-CCCC-----------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP-LSDQ-----------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~~q-----------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|..+..+|++.. +... .=+|+|+.|...+. .++++
T Consensus 44 ~gk~l~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~---~~~~~ 117 (334)
T PRK12562 44 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQE---VVETL 117 (334)
T ss_pred CCCEEEEEECCCCchhHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchH---HHHHH
Confidence 45667765554 544333 488899999999999987541 2111 22899999987653 34444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++-++||||=
T Consensus 118 a-~~~~vPVINa 128 (334)
T PRK12562 118 A-EYAGVPVWNG 128 (334)
T ss_pred H-HhCCCCEEEC
Confidence 3 3467999994
No 118
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.13 E-value=72 Score=31.27 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=46.2
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+. ||.+... +|..++.++|-.+..+|.+..-... .=+|+|..|..... .++++
T Consensus 44 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~---~~~~~ 117 (336)
T PRK03515 44 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQE---IVETL 117 (336)
T ss_pred CCCEEEEEecCCChhHHH---HHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChH---HHHHH
Confidence 3455665544 4554444 4888999999999999875421111 12899999977653 35555
Q ss_pred HHhCCCeeecC
Q 019509 94 RQKHPEVTILD 104 (340)
Q Consensus 94 ~~~~p~v~ViD 104 (340)
. ++.++||||
T Consensus 118 a-~~~~vPVIN 127 (336)
T PRK03515 118 A-EYAGVPVWN 127 (336)
T ss_pred H-HhCCCCEEE
Confidence 4 356799999
No 119
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=42.73 E-value=79 Score=30.89 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=46.3
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+. ||.+...+ |..++.++|-.+..+|.+..-... .=+|+|+.|..... .++++
T Consensus 44 ~gk~l~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~---~~~~~ 117 (332)
T PRK04284 44 KGKNIALIFEKDSTRTRCA---FEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQR---TVETL 117 (332)
T ss_pred CCCEEEEEecCCChhHHHH---HHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchH---HHHHH
Confidence 3455665444 45554444 888999999999998876421111 12899999977653 34444
Q ss_pred HHhCCCeeecC
Q 019509 94 RQKHPEVTILD 104 (340)
Q Consensus 94 ~~~~p~v~ViD 104 (340)
. ++-++||||
T Consensus 118 a-~~s~vPVIN 127 (332)
T PRK04284 118 A-EYSGVPVWN 127 (332)
T ss_pred H-HhCCCCEEE
Confidence 4 345699999
No 120
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=42.71 E-value=75 Score=31.68 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=38.4
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEEEE
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIKVV 219 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~ViG~~v~~~ 219 (340)
||||-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+--+ .==||+||.+|++.
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 5688544 66 677778888888877652 24899998876522 12478999888763
No 121
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.40 E-value=1e+02 Score=24.46 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=25.6
Q ss_pred EEEecCCCcccccchHHHHHHHhCCCEEEEecCCC
Q 019509 32 GYALTSKKKKSFLQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 32 G~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
-..-.+.....+-...+..+.++.|+++..+|.+.
T Consensus 4 ~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 4 VLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 33444555556655568888999999999998875
No 122
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=42.34 E-value=84 Score=30.26 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=47.7
Q ss_pred CcEEEEE-EecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGY-ALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~-~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+- .+.||.+...+ |..++.++|-.+..++.+..-... .=+|+|+.|..... .++++
T Consensus 37 ~gk~~~~lF~epSTRTR~S---FE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~---~~~~~ 110 (302)
T PRK14805 37 AGKSVVMLFEKPSLRTRVS---FDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHS---TIEQL 110 (302)
T ss_pred CCCEEEEEecCCCchHHHH---HHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChh---HHHHH
Confidence 3555664 44456554444 888999999999999864321111 12899999987653 34444
Q ss_pred HHhCCCeeecChHH
Q 019509 94 RQKHPEVTILDPPD 107 (340)
Q Consensus 94 ~~~~p~v~ViDp~~ 107 (340)
. ++-+++|||-..
T Consensus 111 a-~~~~vPVINa~~ 123 (302)
T PRK14805 111 A-EHGSVPVINALC 123 (302)
T ss_pred H-HhCCCCEEECCC
Confidence 4 346799999543
No 123
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=41.17 E-value=1e+02 Score=29.66 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=46.3
Q ss_pred CcEEEEE-EecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGY-ALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~-~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+- .+-||.+...+ |..++.++|-.+..+|.+..-... .=+|+|+.|..... .++++
T Consensus 38 ~gk~v~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~---~~~~~ 111 (304)
T TIGR00658 38 KGKTLALIFEKPSTRTRVS---FEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHE---DVEEL 111 (304)
T ss_pred CCCEEEEEecCCCcchHHH---HHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChH---HHHHH
Confidence 3455664 45556554444 888999999999999875421111 12899999977653 34444
Q ss_pred HHhCCCeeecC
Q 019509 94 RQKHPEVTILD 104 (340)
Q Consensus 94 ~~~~p~v~ViD 104 (340)
. ++-+++|||
T Consensus 112 a-~~~~vPVIN 121 (304)
T TIGR00658 112 A-KYASVPVIN 121 (304)
T ss_pred H-HhCCCCEEE
Confidence 3 346799999
No 124
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=41.13 E-value=75 Score=31.08 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=46.7
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+. ||.+..++ |..++.++|..+..+|++..-... .=+|+|+.|..... .++++
T Consensus 45 ~gk~v~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~---~~~~~ 118 (331)
T PRK02102 45 EGKNIALIFEKTSTRTRCA---FEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQE---IVEEL 118 (331)
T ss_pred CCCEEEEEeCCCChhHHHH---HHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchH---HHHHH
Confidence 4566665554 45544444 888999999999998875311111 22899999976553 34555
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
. ++-++||||=
T Consensus 119 a-~~~~vPVINa 129 (331)
T PRK02102 119 A-KYSGVPVWNG 129 (331)
T ss_pred H-HhCCCCEEEC
Confidence 4 3457999993
No 125
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=40.85 E-value=92 Score=29.99 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=47.3
Q ss_pred cEEEEE-EecCCCcccccchHHHHHHHhCCCEEEEecC-CCC-CCCC-----------CCccEEEEccCchhhHHHHHHH
Q 019509 28 RLVVGY-ALTSKKKKSFLQPKLEILARNKGISFVAIDQ-NRP-LSDQ-----------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 28 ~~~VG~-~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~-~~~-l~~q-----------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
..+|+. ...||-+...+ |..++.++|-....++. +.. +... .=+|+|..|..... .+.++
T Consensus 39 gk~v~~lF~~pSTRTR~S---Fe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~---~~~~~ 112 (301)
T TIGR00670 39 GKILANLFFEPSTRTRLS---FETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEG---AARLA 112 (301)
T ss_pred CCEEEEEeccCCchhHhH---HHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchh---HHHHH
Confidence 445554 44556555444 88899999999999988 431 1111 12899999987653 34444
Q ss_pred HHhCCCeeecChHH
Q 019509 94 RQKHPEVTILDPPD 107 (340)
Q Consensus 94 ~~~~p~v~ViDp~~ 107 (340)
. ++-++||||-..
T Consensus 113 a-~~s~vPVINa~~ 125 (301)
T TIGR00670 113 A-EVSEVPVINAGD 125 (301)
T ss_pred H-hhCCCCEEeCCC
Confidence 3 345799999754
No 126
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=40.74 E-value=28 Score=34.06 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=18.6
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 281 GLRLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 281 Gl~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
-+.++|+|++++. +| +++|||.|.--+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4889999999985 34 799999997653
No 127
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=40.51 E-value=84 Score=31.41 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=35.2
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEEE-
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIKV- 218 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~ViG~~v~~- 218 (340)
||||-.. |+ .+-|+..|.+.+++..++ ..+|+||=|.+--+ .==||+||.+|++
T Consensus 263 V~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 263 VFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 6789544 66 778888899999887662 24899998876511 3358999999876
Q ss_pred EEe
Q 019509 219 VRR 221 (340)
Q Consensus 219 ~~R 221 (340)
..|
T Consensus 340 fyR 342 (404)
T PF08886_consen 340 FYR 342 (404)
T ss_dssp EEE
T ss_pred EEE
Confidence 344
No 128
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=40.32 E-value=1e+02 Score=29.74 Aligned_cols=72 Identities=8% Similarity=0.139 Sum_probs=46.7
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+. ||.+... +|..++.++|-.+..++.+..-... .=+|+|..|..... .+.++
T Consensus 42 ~gk~v~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~---~~~~~ 115 (304)
T PRK00779 42 KGKTLAMIFEKPSTRTRV---SFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHE---TLEEL 115 (304)
T ss_pred CCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChh---HHHHH
Confidence 4555665554 4555444 4889999999999999875421111 12899999987653 34444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
. ++-+++|||=
T Consensus 116 a-~~~~vPVINa 126 (304)
T PRK00779 116 A-EYSTVPVING 126 (304)
T ss_pred H-HhCCCCEEeC
Confidence 3 3567899984
No 129
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.71 E-value=1.3e+02 Score=28.76 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHH-HHHHHHh
Q 019509 202 HGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLA-RELRHRL 280 (340)
Q Consensus 202 h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA-~~~~~~l 280 (340)
|++..|||||=.++.+....|-.-+.. ++ +.. ..+ .....+.++- .++.-.+
T Consensus 174 ~p~~EFRcFVKsn~lvg~~QRd~tnyY-----------d~--l~e--------~kd------~~k~lI~eff~d~i~~kF 226 (334)
T KOG2983|consen 174 KPEMEFRCFVKSNELVGICQRDVTNYY-----------DV--LLE--------EKD------LLKGLIEEFFKDKILFKF 226 (334)
T ss_pred CcCceEEEEEeccceeeeeeccchhHH-----------HH--HHH--------HHH------HHHHHHHHHHHhhhhccC
Confidence 458999999999998876655443321 10 000 000 0011222222 2234445
Q ss_pred CCcEeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 281 GLRLFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 281 Gl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
--.-|-|||-++.. ++.++||+|.|=|-+
T Consensus 227 ~dedfvfDVYi~k~--~kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 227 PDEDFVFDVYITKE--RKVWLIDFNPFCGST 255 (334)
T ss_pred CCCCeeEEEEecCC--CcEEEEeccCccCcc
Confidence 56668899998753 489999999997744
No 130
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=38.28 E-value=48 Score=29.69 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCccEEEE---ccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHH
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLH---KLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q~~~Dvilh---K~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~ 116 (340)
.+-++..++|+.+..|+++.+|+ .|.+|+. .+.+....+.+.+|+++ -|.+++.+...+..-.++.
T Consensus 34 ~~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~ 102 (207)
T PF08532_consen 34 GWYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRV 102 (207)
T ss_dssp HHHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS--
T ss_pred HHHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcC
Confidence 46778899999999999988666 4777763 23344556789999964 6788888877776666665
No 131
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=35.54 E-value=1.1e+02 Score=30.00 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=46.6
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+. ||.+...+ |..++.++|-.+..++.+..-... .=+|+|..|..... .++++
T Consensus 45 ~gk~v~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~---~~~~~ 118 (334)
T PRK01713 45 KGKNIALIFEKTSTRTRCA---FEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQS---IVNEL 118 (334)
T ss_pred CCCEEEEEeCCCCchHHHH---HHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchH---HHHHH
Confidence 4566666555 45554444 888999999999999875411111 12899999977653 34444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++-++||||=
T Consensus 119 a-~~~~vPVINa 129 (334)
T PRK01713 119 A-EYAGVPVFNG 129 (334)
T ss_pred H-HhCCCCEEEC
Confidence 4 3457999994
No 132
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=34.47 E-value=1.5e+02 Score=28.93 Aligned_cols=70 Identities=10% Similarity=0.259 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC-------------CCccEEEEccCchhhHHHHHHHH
Q 019509 28 RLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ-------------GPFDVVLHKLSGMEWCKIIEDYR 94 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q-------------~~~DvilhK~t~~~~~~~l~~~~ 94 (340)
+.+.-..+-||.+...+ |.-+++++|-+++-++....-... -.+|+++.|-...-....+.+|.
T Consensus 47 k~v~~lFFEpSTRTr~S---FE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~ 123 (316)
T COG0540 47 KVVANLFFEPSTRTRLS---FETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFS 123 (316)
T ss_pred cEEEEEEecCCCchhhh---HHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhc
Confidence 34444455567765555 778999999999887765433322 23899998887665555566555
Q ss_pred HhCCCe-eecC
Q 019509 95 QKHPEV-TILD 104 (340)
Q Consensus 95 ~~~p~v-~ViD 104 (340)
++ +|||
T Consensus 124 ----~~~pvIN 130 (316)
T COG0540 124 ----GVNPVIN 130 (316)
T ss_pred ----CCCceEE
Confidence 33 5777
No 133
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=34.27 E-value=1.4e+02 Score=26.78 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=23.7
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+||..+|...-..+ ..+.+.++|+++|+.+...+..
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~ 38 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARKAGKHLIITAGH 38 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 37888876442222 2235678899999999877543
No 134
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=33.85 E-value=27 Score=27.37 Aligned_cols=19 Identities=26% Similarity=0.765 Sum_probs=16.1
Q ss_pred EecccCC--CeEEEEEEECCE
Q 019509 197 QEFVNHG--GILFKIYIIGET 215 (340)
Q Consensus 197 QEfI~h~--G~~~KV~ViG~~ 215 (340)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 6799999 999999999987
No 135
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=30.98 E-value=1.8e+02 Score=28.45 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=46.9
Q ss_pred CcEEEEEEe-cCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYAL-TSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~-~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+-.+ .||-+...+ |..++.++|-.+..++....-... .=+|+|..|...+. .++++
T Consensus 41 ~gk~v~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~---~~~~~ 114 (338)
T PRK02255 41 KNKTLGMIFEQSSTRTRVS---FETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQ---TVVEL 114 (338)
T ss_pred CCCEEEEEeCCCCcchHHH---HHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChH---HHHHH
Confidence 355566544 445554444 888999999999999865421111 12899999987653 34444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
. ++-+++|||=
T Consensus 115 a-~~~~vPVINa 125 (338)
T PRK02255 115 A-KYATVPVING 125 (338)
T ss_pred H-HhCCCCEEEC
Confidence 3 4567999993
No 136
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.92 E-value=2.6e+02 Score=22.33 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=45.1
Q ss_pred cccchHHHHHHHhCCCEEEEecC--CCCCCCCCCccEEEEccCchhhHHHHHHHHHh-CCCeeecChHHHHHHhcCH
Q 019509 42 SFLQPKLEILARNKGISFVAIDQ--NRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPPDAIKHLHNR 115 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~id~--~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~~si~~~~dR 115 (340)
++..+++.++|+++|+++...-. ..--.....+|+||.=-.-.+....+++..+. +-++.+||+-.-....+|=
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg 90 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDP 90 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCH
Confidence 34556789999999998764322 11111245789998644433444556665543 3568889987665445553
No 137
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.28 E-value=1.5e+02 Score=26.33 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=23.3
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+||+.+|...-.-+ ....+.++|+++|+++...+..
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 38 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARAAGYSLLLATTD 38 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeCC
Confidence 47887764321111 2335778999999999887653
No 138
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=29.89 E-value=1.7e+02 Score=26.07 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=23.5
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+||..+|...-.-+ ..+.+.++++++|+++..++..
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAAGYSTIIGNSD 38 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47888875321111 2235788899999999887654
No 139
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=5.9 Score=38.46 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 98 p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
..+.-+|.-.....+.++..+...+.+ .++..|.-.-.......+...+ .-+++|+|.||+. ||+ -.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~vvfp~lhG~~gEDg~iqg~l--e~~giPyvg~gv~--~Sa--~~ 101 (317)
T COG1181 35 YDVTPVDITEAGLWMLDKEVTKRVLQK-------ADVVFPVLHGPYGEDGTIQGLL--ELLGIPYVGKGVL--ASA--GA 101 (317)
T ss_pred ceeEEEeccccceEEeccccchhhccc-------CCEEEEeCCCCCCCCchHHHHH--HHhCCCEecCchh--hhh--hc
Confidence 345555555566666666555444443 2444442221111122233322 3578999999998 553 34
Q ss_pred eEEEeCh-----hhhhccC---------CCeEEEecccCCCeEEEEEEECCEEEEE
Q 019509 178 LFLAYDR-----FSLSELE---------PPMLLQEFVNHGGILFKIYIIGETIKVV 219 (340)
Q Consensus 178 m~iv~~~-----~~L~~l~---------~p~v~QEfI~h~G~~~KV~ViG~~v~~~ 219 (340)
|..+... +++.... .+.++|+|+ .|..|++||.+++....
T Consensus 102 mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSS 155 (317)
T COG1181 102 MDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSS 155 (317)
T ss_pred ccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCccce
Confidence 5555544 2332221 245566777 48899999999997653
No 140
>PLN02342 ornithine carbamoyltransferase
Probab=28.80 E-value=1.7e+02 Score=28.92 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=46.2
Q ss_pred CcEEEEEEe-cCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYAL-TSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~-~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+-.+ .||.+...+ |..++.++|-.+..+|.+..-... .=+|+|+.|..... .++++
T Consensus 84 ~gk~va~lF~epSTRTR~S---FE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~~~---~~~~l 157 (348)
T PLN02342 84 KGKSMAMIFTKPSMRTRVS---FETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQ---DVLDL 157 (348)
T ss_pred CCCEEEEEecCCCcchHHH---HHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCChH---HHHHH
Confidence 345566544 445554444 888999999999999875421111 12899999976553 34444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
. ++-+++|||=
T Consensus 158 a-~~~~vPVINA 168 (348)
T PLN02342 158 A-EYSSVPVING 168 (348)
T ss_pred H-HhCCCCEEEC
Confidence 3 3467999993
No 141
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.48 E-value=85 Score=24.70 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=35.1
Q ss_pred ccchHHHHHHHhCCCEEEE--ecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHh-CCCeeecChH
Q 019509 43 FLQPKLEILARNKGISFVA--IDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPP 106 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~--id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~ 106 (340)
+...++.++++++|+++.. .+..+--.....+|+||.=-.-......+.+..+. +-++.+|||-
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChh
Confidence 4446789999999997643 22222111234689887532222223445544433 2357888874
No 142
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=28.17 E-value=2.2e+02 Score=27.44 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=47.7
Q ss_pred CcEEEEEEe-cCCCcccccchHHHHHHHhCCCEEEEecCCCC-CC------C-----CCC-ccEEEEccCchhhHHHHHH
Q 019509 27 ERLVVGYAL-TSKKKKSFLQPKLEILARNKGISFVAIDQNRP-LS------D-----QGP-FDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 27 ~~~~VG~~~-~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~------~-----q~~-~DvilhK~t~~~~~~~l~~ 92 (340)
...+++-.+ .||.+..++ |..++.++|-....++.... +. + -.= +|+|..|...+.. +++
T Consensus 44 ~gk~~~~lF~~pSTRTR~S---Fe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~---~~~ 117 (305)
T PRK00856 44 RGKTVANLFFEPSTRTRLS---FELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGA---ARL 117 (305)
T ss_pred CCcEEEEEeccCCcchHHH---HHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHH---HHH
Confidence 455666544 445554444 88899999999999987541 11 1 022 8999999776643 444
Q ss_pred HHHhCCCeeecChHH
Q 019509 93 YRQKHPEVTILDPPD 107 (340)
Q Consensus 93 ~~~~~p~v~ViDp~~ 107 (340)
+.+ +.++||||=..
T Consensus 118 ~a~-~~~vPVINa~~ 131 (305)
T PRK00856 118 LAE-SSDVPVINAGD 131 (305)
T ss_pred HHH-HCCCCEEECCC
Confidence 443 35799999643
No 143
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=28.15 E-value=2e+02 Score=27.91 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=51.4
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
....++..+.. |.+..++ |.-++..+|-....++++..-..- .=+|+|..|...+.. ++++
T Consensus 43 ~gk~laliFeK~STRTR~S---Feva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~---ve~l 116 (310)
T COG0078 43 KGKNLALIFEKTSTRTRVS---FEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHET---LEEL 116 (310)
T ss_pred CCceEEEEecCCCchhhhh---HHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHH---HHHH
Confidence 36788888765 4444444 778899999999999987622211 237999999988754 5555
Q ss_pred HHhCCCeeecChH
Q 019509 94 RQKHPEVTILDPP 106 (340)
Q Consensus 94 ~~~~p~v~ViDp~ 106 (340)
+ ++.++||||-+
T Consensus 117 A-~~s~VPViNgL 128 (310)
T COG0078 117 A-KYSGVPVINGL 128 (310)
T ss_pred H-HhCCCceEccc
Confidence 4 45789999965
No 144
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.43 E-value=1.4e+02 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=23.9
Q ss_pred EEEEEecCCCccc--ccchHHHHHHHhCCCEEEEecCCC
Q 019509 30 VVGYALTSKKKKS--FLQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 30 ~VG~~~~~kK~~~--~~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
+||+.+|...... .....+.++++++|++++..+.+.
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 39 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREAGYSVLLCNSDE 39 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 3677777752211 123457778888999998876653
No 145
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=27.38 E-value=2e+02 Score=24.00 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCc---hhhHHHHHHHHHhCCCeeecCh
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~---~~~~~~l~~~~~~~p~v~ViDp 105 (340)
.+-+++.+.|+.+..|+++..+. .||+|+.=... ....+.+.+|+++ .|+++.-+
T Consensus 30 ~~~~~l~~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~ 87 (154)
T cd03143 30 ALYRALRELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGP 87 (154)
T ss_pred HHHHHHHHCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEec
Confidence 57888899999999998766554 68888753322 2345778888764 56666544
No 146
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.77 E-value=3.5e+02 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred EEEEEecCCCcc------cccch--HHHHHHHhCCCEEEEe
Q 019509 30 VVGYALTSKKKK------SFLQP--KLEILARNKGISFVAI 62 (340)
Q Consensus 30 ~VG~~~~~kK~~------~~~~~--~l~~~a~~~gi~~~~i 62 (340)
++||+-..++.+ ++..+ .+.++|+++|++++.+
T Consensus 1 ~~~Y~RvSt~~q~~~~~~sle~Q~~~l~~~a~~~g~~i~~~ 41 (140)
T cd03770 1 TALYCRLSRDDDLDGESNSIENQKAILEEYAKENGLENIRH 41 (140)
T ss_pred CEEEEEECcccccccccCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 468877665433 44433 3677899999987543
No 147
>PLN02527 aspartate carbamoyltransferase
Probab=26.24 E-value=2.1e+02 Score=27.62 Aligned_cols=73 Identities=7% Similarity=0.146 Sum_probs=47.3
Q ss_pred CcEEEEEEec-CCCcccccchHHHHHHHhCCCEEEEecCC---CCCCCC-----------CCccEEEEccCchhhHHHHH
Q 019509 27 ERLVVGYALT-SKKKKSFLQPKLEILARNKGISFVAIDQN---RPLSDQ-----------GPFDVVLHKLSGMEWCKIIE 91 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~~~~~l~~~a~~~gi~~~~id~~---~~l~~q-----------~~~DvilhK~t~~~~~~~l~ 91 (340)
...+|+..+. ||-+... +|..++.++|-....++.. ..+... .=+|+|..|..... .++
T Consensus 38 ~gk~v~llF~epStRTR~---SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~---~~~ 111 (306)
T PLN02527 38 KGYLMATLFYEPSTRTRL---SFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESG---AAR 111 (306)
T ss_pred CCCEEEEEEcCCCchhHH---HHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChh---HHH
Confidence 4566776554 4554444 4888999999999999773 112111 22899999977653 344
Q ss_pred HHHHhCCCeeecChH
Q 019509 92 DYRQKHPEVTILDPP 106 (340)
Q Consensus 92 ~~~~~~p~v~ViDp~ 106 (340)
++. ++-++||||=.
T Consensus 112 ~~a-~~~~vPVINa~ 125 (306)
T PLN02527 112 RAA-ATAEIPVINAG 125 (306)
T ss_pred HHH-HhCCCCEEECC
Confidence 444 45679999954
No 148
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.08 E-value=3.5e+02 Score=21.80 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=41.2
Q ss_pred EEEEecCCCcccccchHHHHHHHhCCCEEEEecCCC----------CCCC-CCCccEEEEccCchhhHHHHHHHHHhCCC
Q 019509 31 VGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNR----------PLSD-QGPFDVVLHKLSGMEWCKIIEDYRQKHPE 99 (340)
Q Consensus 31 VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~----------~l~~-q~~~DvilhK~t~~~~~~~l~~~~~~~p~ 99 (340)
|.......+..++.. ++.+...++|+++.+++++. .+.+ .++.|+++.=.........+.+..+...+
T Consensus 3 iAVvGaS~~~~~~g~-~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 3 IAVVGASDNPGKFGY-RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp EEEET--SSTTSHHH-HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred EEEEcccCCCCChHH-HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 333444445555553 34444455999999999964 2222 25788887766665555666766666666
Q ss_pred eeecChH
Q 019509 100 VTILDPP 106 (340)
Q Consensus 100 v~ViDp~ 106 (340)
.+++-|-
T Consensus 82 ~v~~~~g 88 (116)
T PF13380_consen 82 AVWLQPG 88 (116)
T ss_dssp EEEE-TT
T ss_pred EEEEEcc
Confidence 6777665
No 149
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.44 E-value=1.8e+02 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQ 64 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~ 64 (340)
+||+.++.-....+ ....+.++|+++|+++...+.
T Consensus 1 ~I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~ 37 (268)
T cd06289 1 TIGLVINDLTNPFFAELAAGLEEVLEEAGYTVFLANS 37 (268)
T ss_pred CEEEEecCCCcchHHHHHHHHHHHHHHcCCeEEEecC
Confidence 46777764332111 223577889999998876643
No 150
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=25.31 E-value=1.2e+02 Score=26.70 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCC-CCCCccEEEEccCch--hhHHHHHHHHHhC
Q 019509 47 KLEILARNKGISFVAIDQNRPLS-DQGPFDVVLHKLSGM--EWCKIIEDYRQKH 97 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~-~q~~~DvilhK~t~~--~~~~~l~~~~~~~ 97 (340)
++...-++.|+++...|+...-+ ..+.||.|++=.+-. .+-..+..|+++|
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~ 73 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKH 73 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhhhhhHHHHHHHHHHH
Confidence 56677788999999999987333 567899999876642 2445566666543
No 151
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=25.02 E-value=1e+02 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.578 Sum_probs=25.5
Q ss_pred HHHHHHhCCcE------eEEEEEEecCcCCeEEEEeccCCCC
Q 019509 274 RELRHRLGLRL------FNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 274 ~~~~~~lGl~l------~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
..+.+..|.++ =-||+++.. ++..|+||+|++-|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 44455567776 559999954 45899999999988
No 152
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.66 E-value=3.1e+02 Score=26.16 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=49.5
Q ss_pred CCCCCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEEEccCch-hhHHHH
Q 019509 23 VLQPERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGM-EWCKII 90 (340)
Q Consensus 23 ~~~~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~DvilhK~t~~-~~~~~l 90 (340)
..+.+.+.||.+.+.---.-+ ..+.+.++|+++|+++...+....... ...+|.||.=..+. .....+
T Consensus 20 ~~~~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l 99 (330)
T PRK10355 20 AAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVI 99 (330)
T ss_pred cccCCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHH
Confidence 334579999999975432222 122468889999999998876432211 24688887643322 123445
Q ss_pred HHHHHhCCCeeecCh
Q 019509 91 EDYRQKHPEVTILDP 105 (340)
Q Consensus 91 ~~~~~~~p~v~ViDp 105 (340)
..+.+.+-+++++|.
T Consensus 100 ~~~~~~~iPvV~id~ 114 (330)
T PRK10355 100 KEAKQEGIKVLAYDR 114 (330)
T ss_pred HHHHHCCCeEEEECC
Confidence 555544445777775
No 153
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.61 E-value=2.9e+02 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+||+++|.....-+ ....+.+++++.|+++...+.+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 38 (270)
T cd01545 1 LIGLLYDNPSPGYVSEIQLGALDACRDTGYQLVIEPCD 38 (270)
T ss_pred CEEEEEcCCCcccHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 47888876432122 2235678889999998877554
No 154
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=23.32 E-value=3.5e+02 Score=27.79 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHhCCCEEEE----------ecCCCCCCCCCCccEEEEccCchhh-------------HHHHHHHH------HhCCCee
Q 019509 51 LARNKGISFVA----------IDQNRPLSDQGPFDVVLHKLSGMEW-------------CKIIEDYR------QKHPEVT 101 (340)
Q Consensus 51 ~a~~~gi~~~~----------id~~~~l~~q~~~DvilhK~t~~~~-------------~~~l~~~~------~~~p~v~ 101 (340)
+|+.+|++++. +-++. +....+.|||.-|+-+... -..++.|. .+.+|.=
T Consensus 241 LA~~lGv~LvEg~DL~V~Dg~v~mRT-~~Glk~VdViyRRvDd~f~DPL~~r~DS~lGvpGLveayr~G~VtiaNA~GtG 319 (488)
T COG2308 241 LARQLGVELVEGRDLVVRDGRVYMRT-TGGLKRVDVIYRRVDDDFLDPLEFRADSALGVPGLVEAYRAGNVTIANALGTG 319 (488)
T ss_pred HHHHhCceeeccCceEEECCEEEEEe-cCCceeeeEEEEeccccccChhhcCccccccccHHHHHHhcCcEEEecCCCcC
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEE
Q 019509 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (340)
Q Consensus 102 ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv 181 (340)
|.|+ .++..-+=...-+.+=++. -++.+.|+-+. ..++...-+.... -+|+||..+.|. ..-.+.-.
T Consensus 320 V~dd-ka~~~y~P~~~~~ylge~~-------lL~nv~T~~c~-~~~el~~VL~~l~---~lViK~~~~~gg-~~~lvGpa 386 (488)
T COG2308 320 VADD-KALYAYVPQMIEYYLGEEP-------LLPNVPTYWCG-EPDELEHVLANLS---ELVIKPVEGSGG-YGMLVGPA 386 (488)
T ss_pred cccc-hhHHHHHHHHHHHHccccc-------ccCCCCeeecC-CHHHHHHHHhchh---hheEeeeccCCC-Ccceeccc
Q ss_pred eChhhhhcc--------------------CCCeEEEecccCCCeEEEEEEE
Q 019509 182 YDRFSLSEL--------------------EPPMLLQEFVNHGGILFKIYII 212 (340)
Q Consensus 182 ~~~~~L~~l--------------------~~p~v~QEfI~h~G~~~KV~Vi 212 (340)
.+.+++.++ ..|.++..-+..-..+.|+|++
T Consensus 387 ~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~ 437 (488)
T COG2308 387 ASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFAL 437 (488)
T ss_pred cCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEE
No 155
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=23.12 E-value=2.9e+02 Score=27.73 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=35.3
Q ss_pred EEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccC
Q 019509 29 LVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLS 82 (340)
Q Consensus 29 ~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t 82 (340)
..+.+...||.+..++ |..++.++|-....++.+..-... .=+|+|+.|..
T Consensus 61 ~~~~lF~epSTRTR~S---FE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~ 123 (395)
T PRK07200 61 LGISVFRDNSTRTRFS---YASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDD 123 (395)
T ss_pred eEEEEEcCCCchhHHH---HHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecC
Confidence 3334667777765555 888999999999999875421111 12899999973
No 156
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.94 E-value=2.5e+02 Score=24.98 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=24.4
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
+||+.+|...-.-+ ....+.++|++.|+++...+.+.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 39 (270)
T cd06296 1 LIGLVFPDLDSPWASEVLRGVEEAAAAAGYDVVLSESGR 39 (270)
T ss_pred CeEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 47888876432222 22356788899999998877654
No 157
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=22.71 E-value=2.5e+02 Score=24.86 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=21.9
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+||+.++.-.-..+ ....+.++|+++|+++...+..
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~ 38 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRAHGYQVLVCNSD 38 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 36776654321111 2235788899999999776554
No 158
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=22.54 E-value=2.6e+02 Score=27.35 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=45.9
Q ss_pred CcEEEEEEe-cCCCcccccchHHHHHHHhCCCEEEE-ecCCCC-CCCC-----------CCccEEEEccCchhhHHHHHH
Q 019509 27 ERLVVGYAL-TSKKKKSFLQPKLEILARNKGISFVA-IDQNRP-LSDQ-----------GPFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 27 ~~~~VG~~~-~~kK~~~~~~~~l~~~a~~~gi~~~~-id~~~~-l~~q-----------~~~DvilhK~t~~~~~~~l~~ 92 (340)
...+|+..+ .||.+...+ |..++.++|-.... ++++.. +... .=+|+|+.|...... +++
T Consensus 43 ~gk~v~~lF~epSTRTR~S---Fe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y~D~IviR~~~~~~---~~~ 116 (338)
T PRK08192 43 EGAILGNLFFEPSTRTRVS---FGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMRHPDAGS---VKE 116 (338)
T ss_pred CCCEEEEEEcCCCcchHHH---HHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHcCCEEEEeCCchhH---HHH
Confidence 345566544 456554444 88899999998885 665431 1110 228999999776533 444
Q ss_pred HHHhCCCeeecChHH
Q 019509 93 YRQKHPEVTILDPPD 107 (340)
Q Consensus 93 ~~~~~p~v~ViDp~~ 107 (340)
++ ++-++||||=..
T Consensus 117 ~a-~~~~vPVINa~~ 130 (338)
T PRK08192 117 FA-EGSRVPVINGGD 130 (338)
T ss_pred HH-HhCCCCEEECCC
Confidence 43 346799999543
No 159
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.44 E-value=2.6e+02 Score=24.83 Aligned_cols=37 Identities=8% Similarity=0.195 Sum_probs=23.9
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
+||+.+|...-..+ ....+.+.++++|+.+...+.+.
T Consensus 1 ~i~vv~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 39 (268)
T cd06273 1 TIGAIVPTLDNAIFARVIQAFQETLAAHGYTLLVASSGY 39 (268)
T ss_pred CeEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 47888875332122 12347788899999998876543
No 160
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.02 E-value=3.2e+02 Score=27.82 Aligned_cols=73 Identities=10% Similarity=0.155 Sum_probs=46.8
Q ss_pred CcEEEEE-EecCCCcccccchHHHHHHHhCCCEEEEec-CCC-CCCCC-----------CCccEEEEccCchhhHHHHHH
Q 019509 27 ERLVVGY-ALTSKKKKSFLQPKLEILARNKGISFVAID-QNR-PLSDQ-----------GPFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 27 ~~~~VG~-~~~~kK~~~~~~~~l~~~a~~~gi~~~~id-~~~-~l~~q-----------~~~DvilhK~t~~~~~~~l~~ 92 (340)
...+|+. .+.||.+...+ |..++.++|-..+.++ +.. .+... .=+|+|+.|..... .+++
T Consensus 125 ~GK~v~~lF~epSTRTR~S---FE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~---~~~e 198 (429)
T PRK11891 125 EGAVLGNLFFEASTRTRVS---FGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQG---SVAE 198 (429)
T ss_pred CCcEEEEEeccCCchhHHH---HHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchh---HHHH
Confidence 4566665 44455554444 8889999999999985 322 12110 12899999976553 4555
Q ss_pred HHHhCCCeeecChH
Q 019509 93 YRQKHPEVTILDPP 106 (340)
Q Consensus 93 ~~~~~p~v~ViDp~ 106 (340)
+.+ +-++||||=.
T Consensus 199 ~A~-~s~vPVINAg 211 (429)
T PRK11891 199 FAR-ATNLPVINGG 211 (429)
T ss_pred HHH-hCCCCEEECC
Confidence 543 5679999965
No 161
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.83 E-value=2.8e+02 Score=24.88 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=39.8
Q ss_pred EEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCC---------CCCCccEEEEccCchhhHHHHHHHHHhCC
Q 019509 30 VVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLS---------DQGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (340)
Q Consensus 30 ~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~---------~q~~~DvilhK~t~~~~~~~l~~~~~~~p 98 (340)
+||+.+|.-.-..+ ....+.+.|+++|+++...+...... ....+|.||.-.++......+..+.+.+-
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~i 80 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDL 80 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCC
Confidence 47777764322122 22356788999999988776543121 12467877764333222122233333233
Q ss_pred CeeecCh
Q 019509 99 EVTILDP 105 (340)
Q Consensus 99 ~v~ViDp 105 (340)
+++++|.
T Consensus 81 pvV~i~~ 87 (269)
T cd06281 81 PIVLLDR 87 (269)
T ss_pred CEEEEec
Confidence 4666664
No 162
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.11 E-value=1.5e+02 Score=23.20 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=35.2
Q ss_pred ccchHHHHHHHhCCCEEEE--ecCCCCCCCCCCccEEEEccCchhhHHHHHHHH-HhCCCeeecChH
Q 019509 43 FLQPKLEILARNKGISFVA--IDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYR-QKHPEVTILDPP 106 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~--id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~-~~~p~v~ViDp~ 106 (340)
+..+++.++++++|+++.. .+...--.....+|+||.=-.-......+.++. ..+-.+.+|||-
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChH
Confidence 3445789999999987543 332221112357898875333222234455443 234457777764
No 163
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=20.81 E-value=2.5e+02 Score=23.94 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCcEeEEEEEEecCcCCeEEEEecc--CCCCCCCccccHHHHHHHHHHHHHhh
Q 019509 281 GLRLFNIDMIREHGMRDVFYVIDIN--YFPGYGKMPDYEHIFTDFLLSLEQSK 331 (340)
Q Consensus 281 Gl~l~GvDvi~~~~~g~~~~ViEVN--~fPg~~g~~~~~~~l~~~l~~~i~~~ 331 (340)
|+.|.||=-++.- ++.++|.- |-|||+| ++....-.+++|+...
T Consensus 46 g~~l~Gi~~v~~i----~~~~vecHa~y~P~fRG---~a~~~~~~F~kwlL~N 91 (151)
T PF11039_consen 46 GGQLGGIVYVEEI----QPSVVECHAMYDPGFRG---YALEIGRLFCKWLLEN 91 (151)
T ss_pred ceEEEEEEEEEEE----eeeeEEEEeeeccccch---hHHHHHHHHHHHHhcC
Confidence 7888887666554 35677775 7899999 5556667889988753
No 164
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=20.72 E-value=1.9e+02 Score=26.55 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=35.9
Q ss_pred CccchhhhhhhccCC-CCCCcEEEEEEecCCCcccccc---hHHHHHHHhCCCEEEEecCC
Q 019509 9 HKEDEEDEEEKQSGV-LQPERLVVGYALTSKKKKSFLQ---PKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~VG~~~~~kK~~~~~~---~~l~~~a~~~gi~~~~id~~ 65 (340)
|.-||..-.+..|+. +++...+++.+.+-++. ++.. +.+.+.+.+.|+++..+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~kI~~I~GSlR~~-S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 7 HGIDEPALRPLFSATHKPHIPRILLLYGSLRER-SYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred ccCCccchhhccCCCCCCCCCEEEEEECCCCCc-chHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 555666555666666 55556677777777663 4442 23444556579999999975
No 165
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=20.21 E-value=3.5e+02 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=47.4
Q ss_pred CcEEEEEEe-cCCCcccccchHHHHHHHhCCCEEEEecCCCC---CCC--------CCCccEEEEccCchhhHHHHHHHH
Q 019509 27 ERLVVGYAL-TSKKKKSFLQPKLEILARNKGISFVAIDQNRP---LSD--------QGPFDVVLHKLSGMEWCKIIEDYR 94 (340)
Q Consensus 27 ~~~~VG~~~-~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~---l~~--------q~~~DvilhK~t~~~~~~~l~~~~ 94 (340)
...+|+..+ .||.+...+ |..++.++|-....+|.... ++. ..-+|+|+.|...... ++++
T Consensus 42 ~gk~l~~lF~epSTRTR~S---Fe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~~~D~iv~R~~~~~~---~~~~- 114 (311)
T PRK14804 42 SGRSLAMLFQKTSTRTRVS---FEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSRNVSVIMARLKKHED---LLVM- 114 (311)
T ss_pred CCCEEEEEEcCCchhHHHH---HHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHhcCCEEEEeCCChHH---HHHH-
Confidence 455666544 445554444 88899999999999987421 111 1247999999876643 3333
Q ss_pred HhCCCeeecChH
Q 019509 95 QKHPEVTILDPP 106 (340)
Q Consensus 95 ~~~p~v~ViDp~ 106 (340)
+++..+||||=.
T Consensus 115 a~~~~vPVINag 126 (311)
T PRK14804 115 KNGSQVPVINGC 126 (311)
T ss_pred HHHCCCCEEECC
Confidence 345679999953
Done!