Query 019509
Match_columns 340
No_of_seqs 177 out of 560
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 6E-60 2.1E-64 458.2 31.1 307 27-337 17-340 (346)
2 3t7a_A Inositol pyrophosphate 100.0 3.4E-37 1.2E-41 289.4 20.1 274 23-331 2-313 (330)
3 1z2n_X Inositol 1,3,4-trisphos 100.0 1.2E-36 4.1E-41 289.3 23.1 290 26-331 9-321 (324)
4 1i7n_A Synapsin II; synapse, p 100.0 5.2E-31 1.8E-35 251.2 21.7 243 50-333 33-308 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 4.2E-30 1.4E-34 247.9 20.7 239 53-332 52-324 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 3.4E-29 1.1E-33 246.1 21.4 242 51-333 146-420 (422)
7 1uc8_A LYSX, lysine biosynthes 99.9 4.1E-24 1.4E-28 197.4 18.0 231 44-314 12-260 (280)
8 4eg0_A D-alanine--D-alanine li 99.9 1.1E-23 3.8E-28 200.1 21.2 259 28-316 13-292 (317)
9 3r5x_A D-alanine--D-alanine li 99.9 1.9E-23 6.4E-28 196.8 20.0 235 45-313 24-273 (307)
10 3se7_A VANA; alpha-beta struct 99.9 8E-23 2.7E-27 196.9 19.5 233 47-314 26-316 (346)
11 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 2.3E-22 8E-27 188.3 21.2 236 46-313 24-280 (306)
12 3ln6_A Glutathione biosynthesi 99.9 3.1E-22 1E-26 210.8 17.1 248 43-324 428-746 (750)
13 1ehi_A LMDDL2, D-alanine:D-lac 99.9 6.8E-21 2.3E-25 185.7 22.2 241 46-313 25-326 (377)
14 2i87_A D-alanine-D-alanine lig 99.9 1.9E-21 6.6E-26 188.3 16.8 236 46-313 25-316 (364)
15 3k3p_A D-alanine--D-alanine li 99.9 5.7E-21 1.9E-25 187.1 19.0 259 27-313 36-346 (383)
16 4fu0_A D-alanine--D-alanine li 99.9 4.8E-21 1.7E-25 185.4 17.0 215 73-315 97-324 (357)
17 1e4e_A Vancomycin/teicoplanin 99.9 1.3E-20 4.5E-25 180.9 18.5 206 73-313 90-315 (343)
18 2fb9_A D-alanine:D-alanine lig 99.9 3.5E-20 1.2E-24 176.8 21.1 207 71-314 74-296 (322)
19 3i12_A D-alanine-D-alanine lig 99.9 6.9E-20 2.4E-24 177.8 23.3 210 73-314 98-326 (364)
20 3tqt_A D-alanine--D-alanine li 99.9 1.9E-20 6.4E-25 182.7 19.3 215 73-315 98-328 (372)
21 3e5n_A D-alanine-D-alanine lig 99.9 1.9E-20 6.4E-25 183.5 19.0 258 25-314 19-345 (386)
22 3ln7_A Glutathione biosynthesi 99.8 7.6E-21 2.6E-25 200.0 15.5 251 42-324 432-752 (757)
23 2pvp_A D-alanine-D-alanine lig 99.8 9.6E-20 3.3E-24 177.3 19.4 223 73-330 107-346 (367)
24 3lwb_A D-alanine--D-alanine li 99.8 5.8E-20 2E-24 179.2 14.9 215 73-314 109-341 (373)
25 1gsa_A Glutathione synthetase; 99.8 6.3E-19 2.1E-23 165.0 15.8 236 43-326 19-311 (316)
26 3ax6_A Phosphoribosylaminoimid 99.7 3.3E-16 1.1E-20 151.8 23.6 227 45-312 13-266 (380)
27 3vot_A L-amino acid ligase, BL 99.7 5E-16 1.7E-20 152.9 24.1 178 98-315 97-298 (425)
28 3q2o_A Phosphoribosylaminoimid 99.7 3.3E-16 1.1E-20 152.7 22.6 241 27-312 13-283 (389)
29 3aw8_A PURK, phosphoribosylami 99.7 1.6E-16 5.5E-21 153.4 18.6 225 46-312 12-267 (369)
30 4dim_A Phosphoribosylglycinami 99.7 1.7E-16 5.7E-21 154.8 18.2 231 46-315 20-287 (403)
31 3k5i_A Phosphoribosyl-aminoimi 99.7 1.2E-16 4.2E-21 157.0 16.5 246 26-313 22-297 (403)
32 4ffl_A PYLC; amino acid, biosy 99.7 4.7E-16 1.6E-20 149.9 20.0 206 46-310 14-247 (363)
33 3orq_A N5-carboxyaminoimidazol 99.7 9.3E-16 3.2E-20 149.3 22.3 236 28-311 12-278 (377)
34 2z04_A Phosphoribosylaminoimid 99.7 7.6E-17 2.6E-21 155.4 12.2 219 45-313 13-260 (365)
35 1kjq_A GART 2, phosphoribosylg 99.7 3.1E-16 1E-20 152.2 15.6 228 45-313 23-288 (391)
36 4e4t_A Phosphoribosylaminoimid 99.7 2E-15 6.8E-20 149.2 21.0 240 27-312 34-308 (419)
37 2dwc_A PH0318, 433AA long hypo 99.7 9.1E-16 3.1E-20 151.4 17.6 230 45-313 31-301 (433)
38 3eth_A Phosphoribosylaminoimid 99.7 3E-15 1E-19 145.0 20.9 224 46-313 14-248 (355)
39 3df7_A Putative ATP-grAsp supe 99.7 1.3E-15 4.4E-20 144.4 15.3 181 72-311 68-252 (305)
40 2r85_A PURP protein PF1517; AT 99.6 1.5E-14 5E-19 136.8 19.5 227 45-310 13-290 (334)
41 3ouz_A Biotin carboxylase; str 99.6 1.2E-14 4.1E-19 144.1 19.2 226 46-311 19-300 (446)
42 2pn1_A Carbamoylphosphate synt 99.6 2E-14 6.9E-19 136.2 17.3 168 98-310 97-275 (331)
43 1a9x_A Carbamoyl phosphate syn 99.6 2.9E-14 1E-18 155.7 18.7 227 45-309 30-305 (1073)
44 1a9x_A Carbamoyl phosphate syn 99.6 3.4E-14 1.2E-18 155.3 17.4 226 44-309 581-847 (1073)
45 3lp8_A Phosphoribosylamine-gly 99.6 5.3E-14 1.8E-18 139.9 16.9 200 98-331 106-336 (442)
46 2dzd_A Pyruvate carboxylase; b 99.6 6.5E-14 2.2E-18 139.2 17.6 226 46-311 19-300 (461)
47 2vpq_A Acetyl-COA carboxylase; 99.6 7.7E-14 2.6E-18 138.2 17.9 227 47-311 15-296 (451)
48 3vmm_A Alanine-anticapsin liga 99.6 8.5E-14 2.9E-18 139.7 18.2 206 46-309 92-332 (474)
49 1ulz_A Pyruvate carboxylase N- 99.6 5.4E-14 1.8E-18 139.4 16.5 226 47-311 16-295 (451)
50 2w70_A Biotin carboxylase; lig 99.5 9.5E-14 3.3E-18 137.5 16.8 225 47-311 16-296 (449)
51 2ip4_A PURD, phosphoribosylami 99.5 4.1E-14 1.4E-18 138.8 13.7 179 98-311 84-285 (417)
52 3mjf_A Phosphoribosylamine--gl 99.5 1.2E-13 4E-18 136.9 16.6 237 45-331 56-321 (431)
53 1vkz_A Phosphoribosylamine--gl 99.5 1.2E-13 4E-18 135.7 15.0 180 101-313 93-295 (412)
54 2yw2_A Phosphoribosylamine--gl 99.5 6.8E-14 2.3E-18 137.4 13.1 181 98-312 85-292 (424)
55 2xcl_A Phosphoribosylamine--gl 99.5 1.2E-13 4.1E-18 135.6 14.6 181 98-312 85-292 (422)
56 2yrx_A Phosphoribosylglycinami 99.5 1.9E-13 6.4E-18 135.7 16.0 181 98-312 106-313 (451)
57 3glk_A Acetyl-COA carboxylase 99.5 2.3E-13 7.8E-18 138.7 15.6 226 33-311 98-368 (540)
58 3jrx_A Acetyl-COA carboxylase 99.5 2.3E-13 8E-18 139.7 14.0 218 41-311 123-384 (587)
59 2qk4_A Trifunctional purine bi 99.5 4.3E-13 1.5E-17 133.1 14.9 181 98-312 111-319 (452)
60 3u9t_A MCC alpha, methylcroton 99.5 1.2E-13 4.2E-18 144.1 11.4 227 45-310 40-321 (675)
61 3n6r_A Propionyl-COA carboxyla 99.5 1.2E-13 4.1E-18 144.3 10.8 176 98-311 98-296 (681)
62 3hbl_A Pyruvate carboxylase; T 99.5 1.1E-12 3.8E-17 143.8 18.5 225 46-311 17-298 (1150)
63 2qf7_A Pyruvate carboxylase pr 99.4 1.6E-12 5.5E-17 142.8 16.0 228 46-311 27-316 (1165)
64 3va7_A KLLA0E08119P; carboxyla 99.4 1.6E-12 5.6E-17 143.1 15.7 227 45-310 43-324 (1236)
65 1w96_A ACC, acetyl-coenzyme A 99.4 7.4E-12 2.5E-16 127.7 16.3 178 100-311 158-375 (554)
66 2pbz_A Hypothetical protein; N 99.1 8.6E-10 3E-14 105.3 14.6 216 47-309 15-271 (320)
67 2r7k_A 5-formaminoimidazole-4- 99.0 8.1E-09 2.8E-13 100.1 16.8 238 29-309 19-316 (361)
68 2cqy_A Propionyl-COA carboxyla 98.9 7.6E-12 2.6E-16 99.2 -7.8 90 110-213 4-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.5 1.5E-06 5E-11 84.5 13.6 151 47-212 19-209 (380)
70 1wr2_A Hypothetical protein PH 98.4 2.2E-07 7.5E-12 84.4 4.3 93 112-215 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.5 9.3E-05 3.2E-09 72.4 6.5 89 116-215 6-108 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.5 0.00011 3.7E-09 71.7 6.0 92 114-216 4-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.3 0.00029 1E-08 68.8 6.3 91 114-215 4-123 (395)
74 2io8_A Bifunctional glutathion 97.2 0.0025 8.6E-08 65.6 12.5 173 30-223 381-600 (619)
75 2vob_A Trypanothione synthetas 92.5 1.5 5.3E-05 45.1 13.6 173 30-223 397-615 (652)
76 3n6x_A Putative glutathionylsp 92.1 0.066 2.3E-06 53.3 2.8 134 72-218 268-441 (474)
77 3mwd_A ATP-citrate synthase; A 85.7 1.8 6.1E-05 42.3 7.6 81 134-215 26-127 (425)
78 3pff_A ATP-citrate synthase; p 68.6 11 0.00037 40.0 7.7 81 134-215 26-127 (829)
79 3nbm_A PTS system, lactose-spe 60.0 42 0.0014 26.0 8.0 82 42-123 20-104 (108)
80 3s99_A Basic membrane lipoprot 54.4 17 0.0006 34.1 5.8 92 9-102 7-113 (356)
81 1duv_G Octase-1, ornithine tra 47.0 46 0.0016 31.2 7.3 72 27-105 43-127 (333)
82 3k1t_A Glutamate--cysteine lig 44.6 59 0.002 31.4 7.6 57 162-221 280-359 (432)
83 4a8t_A Putrescine carbamoyltra 44.1 58 0.002 30.6 7.5 72 27-105 62-146 (339)
84 4a8p_A Putrescine carbamoyltra 43.7 40 0.0014 31.9 6.4 72 27-105 40-124 (355)
85 3jy6_A Transcriptional regulat 43.4 44 0.0015 28.9 6.3 42 25-66 4-47 (276)
86 3l6u_A ABC-type sugar transpor 43.1 45 0.0015 29.0 6.4 41 26-66 6-48 (293)
87 3l49_A ABC sugar (ribose) tran 41.7 51 0.0018 28.5 6.6 40 27-66 4-45 (291)
88 3tb6_A Arabinose metabolism tr 41.3 73 0.0025 27.5 7.5 39 28-66 15-55 (298)
89 1oth_A Protein (ornithine tran 41.0 51 0.0017 30.7 6.5 72 27-105 45-129 (321)
90 3cs3_A Sugar-binding transcrip 40.9 1.4E+02 0.0049 25.5 9.4 79 26-105 6-88 (277)
91 3gyb_A Transcriptional regulat 40.6 63 0.0022 27.8 6.9 51 27-78 4-65 (280)
92 1e2b_A Enzyme IIB-cellobiose; 40.1 22 0.00077 27.4 3.4 76 42-120 17-94 (106)
93 1vlv_A Otcase, ornithine carba 39.1 84 0.0029 29.3 7.8 72 27-105 57-141 (325)
94 3r7f_A Aspartate carbamoyltran 39.0 74 0.0025 29.4 7.3 73 27-106 35-121 (304)
95 3m9w_A D-xylose-binding peripl 38.5 64 0.0022 28.4 6.8 77 28-104 2-90 (313)
96 1pvv_A Otcase, ornithine carba 38.4 51 0.0017 30.6 6.1 72 27-105 45-129 (315)
97 3o74_A Fructose transport syst 36.8 45 0.0015 28.5 5.3 39 28-66 2-42 (272)
98 2w37_A Ornithine carbamoyltran 36.1 78 0.0027 30.0 7.1 72 27-105 66-150 (359)
99 3gd5_A Otcase, ornithine carba 35.3 70 0.0024 29.8 6.5 72 27-105 47-131 (323)
100 1dxh_A Ornithine carbamoyltran 35.2 77 0.0026 29.7 6.8 72 27-105 44-128 (335)
101 3tpf_A Otcase, ornithine carba 34.9 1.1E+02 0.0037 28.2 7.8 73 27-106 35-120 (307)
102 1js1_X Transcarbamylase; alpha 34.8 50 0.0017 30.9 5.4 75 27-105 35-141 (324)
103 2i6u_A Otcase, ornithine carba 34.3 47 0.0016 30.7 5.2 72 27-105 38-122 (307)
104 4h31_A Otcase, ornithine carba 34.0 92 0.0031 29.4 7.2 71 27-104 69-152 (358)
105 3uug_A Multiple sugar-binding 33.8 74 0.0025 28.1 6.4 39 27-65 2-42 (330)
106 2ef0_A Ornithine carbamoyltran 33.8 73 0.0025 29.4 6.3 73 26-105 43-128 (301)
107 3bbl_A Regulatory protein of L 32.4 1.6E+02 0.0055 25.4 8.3 38 27-65 3-47 (287)
108 4ep1_A Otcase, ornithine carba 32.4 80 0.0028 29.7 6.4 72 27-105 69-153 (340)
109 4f2g_A Otcase 1, ornithine car 31.0 77 0.0026 29.3 6.0 73 26-105 43-128 (309)
110 3rot_A ABC sugar transporter, 30.8 75 0.0026 27.8 5.8 39 27-65 2-42 (297)
111 8abp_A L-arabinose-binding pro 28.1 97 0.0033 26.9 6.1 76 28-104 2-89 (306)
112 3guv_A Site-specific recombina 28.1 2.3E+02 0.008 22.7 8.1 35 27-61 4-44 (167)
113 4ekn_B Aspartate carbamoyltran 28.1 1.7E+02 0.0059 26.8 7.9 74 26-106 38-125 (306)
114 3kke_A LACI family transcripti 27.7 1.1E+02 0.0038 26.7 6.4 78 26-104 13-101 (303)
115 2xko_C PIPX, global nitrogen r 27.5 16 0.00055 27.6 0.5 19 197-215 4-24 (89)
116 3qk7_A Transcriptional regulat 27.0 1.8E+02 0.0062 25.2 7.7 76 27-104 5-95 (294)
117 3h75_A Periplasmic sugar-bindi 25.8 70 0.0024 28.8 4.7 39 28-66 3-44 (350)
118 3k4h_A Putative transcriptiona 25.4 1.1E+02 0.0037 26.4 5.8 40 26-65 6-52 (292)
119 4amu_A Ornithine carbamoyltran 25.3 69 0.0023 30.4 4.6 72 27-105 70-154 (365)
120 3gv0_A Transcriptional regulat 25.0 1.8E+02 0.0062 25.0 7.3 41 26-66 6-50 (288)
121 3egc_A Putative ribose operon 24.2 65 0.0022 28.0 4.1 41 26-66 6-48 (291)
122 3sds_A Ornithine carbamoyltran 23.8 2E+02 0.0068 27.0 7.5 73 27-106 65-150 (353)
123 3o1i_D Periplasmic protein TOR 22.8 63 0.0022 28.1 3.7 41 26-66 3-45 (304)
124 2l2q_A PTS system, cellobiose- 22.5 2.5E+02 0.0085 21.1 9.9 80 42-124 18-101 (109)
125 3csu_A Protein (aspartate carb 22.4 1E+02 0.0036 28.4 5.2 75 27-107 40-129 (310)
126 3brq_A HTH-type transcriptiona 22.2 1.8E+02 0.0063 24.8 6.7 40 26-65 17-60 (296)
127 2fv4_B Hypothetical 24.6 kDa p 22.0 2.4E+02 0.0081 20.6 6.0 52 270-329 22-76 (77)
128 3n5b_B ASR0485 protein; PII, P 22.0 24 0.00082 27.6 0.6 24 192-215 22-47 (112)
129 3rht_A (gatase1)-like protein; 21.8 1.6E+02 0.0054 26.4 6.2 61 47-107 21-89 (259)
130 1pg5_A Aspartate carbamoyltran 21.2 2.1E+02 0.0071 26.2 7.0 72 27-105 37-122 (299)
131 2ioy_A Periplasmic sugar-bindi 21.1 1.5E+02 0.0051 25.5 5.8 37 29-65 2-40 (283)
132 2fn9_A Ribose ABC transporter, 20.3 1.9E+02 0.0066 24.7 6.4 37 29-65 3-41 (290)
133 2fvy_A D-galactose-binding per 20.2 2.3E+02 0.0078 24.4 6.9 38 28-65 2-42 (309)
134 4e5v_A Putative THUA-like prot 20.1 2.6E+02 0.009 25.0 7.4 60 46-105 23-94 (281)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=6e-60 Score=458.19 Aligned_cols=307 Identities=31% Similarity=0.533 Sum_probs=255.7
Q ss_pred CcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCch------------hhHHHHHHHH
Q 019509 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGM------------EWCKIIEDYR 94 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~------------~~~~~l~~~~ 94 (340)
.+++|||||++||.++|.+++|+++++++|++++.||+++++..|++||++|||+++. .+++.+++|.
T Consensus 17 ~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~ 96 (346)
T 2q7d_A 17 KGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYI 96 (346)
T ss_dssp TTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999899999999999872 5678899998
Q ss_pred HhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecC-CCChhhHHHhhCCCCcEEEecCCCCCCC
Q 019509 95 QKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (340)
Q Consensus 95 ~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~-~~~~~~~l~~~~l~~PvVvKP~~a~Gs~ 173 (340)
.+++|++||||+++|++|.||+.|+++|+++......+||++|+|+++.+. .++..+.+...+++||+|+||+.++||+
T Consensus 97 ~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~ 176 (346)
T 2q7d_A 97 DAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTN 176 (346)
T ss_dssp HHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTT
T ss_pred HHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcce
Confidence 889999999999999999999999999998543334469999999999643 2445555555689999999999989986
Q ss_pred cceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeeccc--cccccccc
Q 019509 174 KSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPR--VSSAAASA 251 (340)
Q Consensus 174 ~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 251 (340)
+|+|.++++.++|..++.|+|+||||+|+|++|||||||+++++++|+|+|+|..+. +..++|+|.. +++++..+
T Consensus 177 -s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~~~~g~~~ 253 (346)
T 2q7d_A 177 -SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNVSKPESSS 253 (346)
T ss_dssp -CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGTSSTTCCC
T ss_pred -eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceeeccCCccc
Confidence 999999999999999999999999999999999999999999999999999886543 2346677664 66655432
Q ss_pred CCCCCCC--CCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCccccHHHHHHHHHHHHH
Q 019509 252 DDADLDP--GIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQ 329 (340)
Q Consensus 252 ~~~~~~~--~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~l~~~i~ 329 (340)
.....++ ...++++.++++++|.+++++||++++|||+|++.++| ++||+|||+||||+|+++++..+.++|+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~ 332 (346)
T 2q7d_A 254 VLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-QHAVIDINAFPGYEGVSEFFTDLLNHIATVLQ 332 (346)
T ss_dssp GGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-CEEEEEEEESCCCTTCTTHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-CEEEEEEeCCccccccchHHHHHHHHHHHHhh
Confidence 1111111 12345667889999999999999999999999985444 69999999999999999999999999999998
Q ss_pred hhcccCCC
Q 019509 330 SKCRKRPA 337 (340)
Q Consensus 330 ~~~~~~~~ 337 (340)
+++...-+
T Consensus 333 ~~~~~~~~ 340 (346)
T 2q7d_A 333 GQSTAMAA 340 (346)
T ss_dssp HHHTTCBC
T ss_pred ccCCCccc
Confidence 76664433
No 2
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=3.4e-37 Score=289.42 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=203.7
Q ss_pred CCCCCcEEEEEEecCCCcccccchH-HHHHHHhCCCEEEEec----CCCCCCCCCCccEEEEccCchhhHHHHHHHHHhC
Q 019509 23 VLQPERLVVGYALTSKKKKSFLQPK-LEILARNKGISFVAID----QNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (340)
Q Consensus 23 ~~~~~~~~VG~~~~~kK~~~~~~~~-l~~~a~~~gi~~~~id----~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~ 97 (340)
+++...++||.|.+.+|.+|-.++. |-++.+..-++++... ++.+.+.|+-+|++|...++...+..+.+|.+.
T Consensus 2 ~~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~l- 80 (330)
T 3t7a_A 2 SFTERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKL- 80 (330)
T ss_dssp ----CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHH-
T ss_pred CCCCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHH-
Confidence 4566799999999999988875555 5555554556665543 366888999999999999998888888888865
Q ss_pred CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC--------hhhHH--HhhCCCCcEEEecC
Q 019509 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS--------IPDQV--FEAGLKLPLVAKPL 167 (340)
Q Consensus 98 p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~--------~~~~l--~~~~l~~PvVvKP~ 167 (340)
-+.++||++.++..++||+.++++|.+ +|||+|+++++.++... ..+.+ ....+++|+|+||+
T Consensus 81 r~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv 153 (330)
T 3t7a_A 81 RNPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV 153 (330)
T ss_dssp HCCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEES
T ss_pred hCCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccc
Confidence 346899999999999999999999998 49999999999764320 00111 12457899999999
Q ss_pred CCCCCCcceeeEEEeChhh---hh-------------------ccCCCeEEEecccCCCeEEEEEEECCEEE-EEEeecC
Q 019509 168 VVDGSAKSHELFLAYDRFS---LS-------------------ELEPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSL 224 (340)
Q Consensus 168 ~a~Gs~~sh~m~iv~~~~~---L~-------------------~l~~p~v~QEfI~h~G~~~KV~ViG~~v~-~~~R~sl 224 (340)
. || .|++.|.+.... .. .-+.++++||||+++|+|+||||||++++ ++.|+|
T Consensus 154 ~--Gs--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~s- 228 (330)
T 3t7a_A 154 S--AE--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS- 228 (330)
T ss_dssp B--TT--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEEC-
T ss_pred c--cc--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeC-
Confidence 8 54 577777776532 11 11458999999999999999999999976 466766
Q ss_pred CCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEec
Q 019509 225 PNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDI 304 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEV 304 (340)
|.. .|+|++|. + .+..+.. ....++.+++|.++++++|++++|||++++++ ++||+||
T Consensus 229 p~~-~G~~r~N~--------~-gG~~~~~---------v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~~V~EV 286 (330)
T 3t7a_A 229 PAL-DGKVERDS--------E-GKEVRYP---------VILNAREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDV 286 (330)
T ss_dssp TTS-SCBCCBCT--------T-SCBCCEE---------CCCCHHHHHHHHHHHHHTTBSEEEEEEEEETT---EEEEEEE
T ss_pred CCC-CCcEEEcC--------C-CCceeee---------ecCCHHHHHHHHHHHHHhCCceEEEEEEEECC---ccEEEEe
Confidence 422 23555431 1 1111111 12245679999999999999999999999753 6799999
Q ss_pred cCCCCCCCccccHHHHHHHHHHHHHhh
Q 019509 305 NYFPGYGKMPDYEHIFTDFLLSLEQSK 331 (340)
Q Consensus 305 N~fPg~~g~~~~~~~l~~~l~~~i~~~ 331 (340)
|.||..|+..+|+..++..|.+.+.++
T Consensus 287 Ng~~fvk~~~~yyd~~a~il~~~~~~~ 313 (330)
T 3t7a_A 287 NGFSFVKNSMKYYDDCAKILGNIVMRE 313 (330)
T ss_dssp EESCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCchhHHHHHHHHHHHHHHHH
Confidence 999999999999888888777776553
No 3
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=1.2e-36 Score=289.28 Aligned_cols=290 Identities=20% Similarity=0.332 Sum_probs=217.5
Q ss_pred CCcEEEEEEecCCCcccccchHHHHHHHhCCCEE--EEecCCCCCCCCC-CccEEEEccCch--hhHHHHHHHHHhCCCe
Q 019509 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISF--VAIDQNRPLSDQG-PFDVVLHKLSGM--EWCKIIEDYRQKHPEV 100 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~--~~id~~~~l~~q~-~~DvilhK~t~~--~~~~~l~~~~~~~p~v 100 (340)
..+.+||++..+++. ++ .+.++++++|+++ ..+|++.++..++ .+|+++++.++. .+.+.++.+..+++++
T Consensus 9 ~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~ 84 (324)
T 1z2n_X 9 KQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPKV 84 (324)
T ss_dssp -CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCTTS
T ss_pred CCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCCCC
Confidence 346789999987765 33 6788889999999 9999976676666 899999999774 3456677777777899
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 101 ~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
+++|+++++..+.||..+.+.|.++ ||++|+|+++. +.+++.+.+...+++||+|+||..++|+..+++|.+
T Consensus 85 ~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~-~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~ 156 (324)
T 1z2n_X 85 LFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVK-SKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKI 156 (324)
T ss_dssp EEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEES-SHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEE
T ss_pred eEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEE
Confidence 9999999999999999999999974 89999999985 332333333333477999999998666666799999
Q ss_pred EeChhhhhccCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecc----------ccccc---
Q 019509 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFP----------RVSSA--- 247 (340)
Q Consensus 181 v~~~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~----------~~~~~--- 247 (340)
+.+.++|..+..++++||||+++|++++|+|+|+++..+.|++++++..++..+ ..+|++. .+++.
T Consensus 157 v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~~~~ 235 (324)
T 1z2n_X 157 VLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQDII 235 (324)
T ss_dssp ECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHHHHH
T ss_pred EeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccccccccccc
Confidence 999999999889999999999889999999999999888888877654322111 1123322 11110
Q ss_pred ----ccc-cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCccccHHHHHH
Q 019509 248 ----AAS-ADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTD 322 (340)
Q Consensus 248 ----~~~-~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~ 322 (340)
+.. +.... .+......+.+.++++|.+++++||+.++|||++++.++| ++||+|||.+|||++++++. .+.+
T Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g-~~~vlEvN~~Pg~~~~~~~~-~i~~ 312 (324)
T 1z2n_X 236 ENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG-NPLVVDVNVFPSYGGKVDFD-WFVE 312 (324)
T ss_dssp HHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS-SCEEEEEEESCCTTSCBCHH-HHHH
T ss_pred cccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC-CEEEEEEcCCCCcCCCCCHH-HHHH
Confidence 000 00000 0000111122579999999999999999999999874334 68999999999999999998 8888
Q ss_pred HHHHHHHhh
Q 019509 323 FLLSLEQSK 331 (340)
Q Consensus 323 ~l~~~i~~~ 331 (340)
++.+.+.++
T Consensus 313 ~l~~~~~~~ 321 (324)
T 1z2n_X 313 KVALCYTEV 321 (324)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 888877653
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=5.2e-31 Score=251.17 Aligned_cols=243 Identities=13% Similarity=0.143 Sum_probs=178.5
Q ss_pred HHHHhCCCEEEEecCCCCCC-----CC-------CCccEEEEccCchh------hHHHHHHHHHhCCCeeecChHHHHHH
Q 019509 50 ILARNKGISFVAIDQNRPLS-----DQ-------GPFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKH 111 (340)
Q Consensus 50 ~~a~~~gi~~~~id~~~~l~-----~q-------~~~DvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~si~~ 111 (340)
+.++..+|++..++...... +. ..+|++|.|..+.. ++..+..+ + ..|++|||++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~~l-e-~~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGM-Q-YAGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHHHH-H-HTTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHHHH-H-HCCccccCCHHHHHH
Confidence 45666778877776654321 11 25899999997653 23333333 3 368999999999999
Q ss_pred hcCH----HHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhh
Q 019509 112 LHNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (340)
Q Consensus 112 ~~dR----~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L 187 (340)
|.|| ..++++|.++.+ +++|.|++.... + ..+. ...++||+|+||.. || ++.||.++.+++++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~-~---~~~~--~~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~~ 177 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYP-N---HREM--LTLPTFPVVVKIGH--AH-SGMGKVKVENHYDF 177 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-S---GGGG--SSCCCSSEEEEESS--CS-TTTTEEEECSHHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeC-C---hhhh--hhccCCCEEEEeCC--CC-ceeCeEEECCHHHH
Confidence 9999 567788877521 244855554442 2 2222 23579999999998 76 78999999999887
Q ss_pred hcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCC
Q 019509 188 SEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 260 (340)
Q Consensus 188 ~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (340)
+.+ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ .+..
T Consensus 178 ~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrtN~~---------------~~~~---- 233 (309)
T 1i7n_A 178 QDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKTNTG---------------SAML---- 233 (309)
T ss_dssp HHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSCSCC---------------CSSE----
T ss_pred HHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCeecCC---------------ccee----
Confidence 553 56789999999 79999999999999999999742 35665421 1111
Q ss_pred CCCCChhHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCccc-cHHHHHHHHHHHHHhhcc
Q 019509 261 AELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPD-YEHIFTDFLLSLEQSKCR 333 (340)
Q Consensus 261 ~~~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~-~~~~l~~~l~~~i~~~~~ 333 (340)
...++.++.+++|.++++++ |++++|||++.+.+ | +++|+|||. +||++|.+. ....+++++.+.+++.+.
T Consensus 234 e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 234 EQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-G-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp EEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred eecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 12344567899999999999 89999999998753 3 589999999 999998864 467888888888877654
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=247.89 Aligned_cols=239 Identities=12% Similarity=0.161 Sum_probs=173.7
Q ss_pred HhCCCEEEEecCCCCCC-----CCC--------CccEEEEccCchh------hHHHHHHHHHhCCCeeecChHHHHHHhc
Q 019509 53 RNKGISFVAIDQNRPLS-----DQG--------PFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKHLH 113 (340)
Q Consensus 53 ~~~gi~~~~id~~~~l~-----~q~--------~~DvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~si~~~~ 113 (340)
+..++++..+++..... +.| .+|++|.|..+.. +...+. ..+ ..|++|||++++|.+|.
T Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~vl~-~le-~~GvpviN~~~sI~~~~ 129 (344)
T 2p0a_A 52 EFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVI-GLQ-YGGLPAVNSLYSVYNFC 129 (344)
T ss_dssp CGGGEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHHHHH-HHH-HTTCCEESCHHHHHHTT
T ss_pred hhcceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHHHHH-HHH-HCCceecCCHHHHHhhC
Confidence 33448888887755321 112 6899999998742 333333 333 36899999999999999
Q ss_pred CH----HHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc
Q 019509 114 NR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 189 (340)
Q Consensus 114 dR----~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~ 189 (340)
|| ..++++|.++.+ +++|+|.+.... +..++ ...++||+|+||.. || ++.+|.++.+.++++.
T Consensus 130 DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~-~~~~~-----~~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~~~ 196 (344)
T 2p0a_A 130 SKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP-NHKPM-----VTAPHFPVVVKLGH--AH-AGMGKIKVENQLDFQD 196 (344)
T ss_dssp CHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SSTTC-----CCCSSSSEEEEESS--CC-TTTTEEEECSHHHHHH
T ss_pred CchHHHHHHHHHHHHCCC----CCCCCCCEEecC-chhhh-----hhccCCCEEEEeCC--CC-ceeCeEEECCHHHHHH
Confidence 99 667788887521 245855554443 22221 23579999999998 76 8899999999988874
Q ss_pred c-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCC
Q 019509 190 L-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAE 262 (340)
Q Consensus 190 l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (340)
+ +..+++||||+ .|+|+||+|||+++.+++|++.. ++|++|.+ .+.. ..
T Consensus 197 ~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrtN~~---------------~~~~----e~ 252 (344)
T 2p0a_A 197 ITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKANTG---------------SAML----EQ 252 (344)
T ss_dssp HHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------SEEE----EE
T ss_pred HHHHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCeecCC---------------ceEE----Ee
Confidence 2 56788999999 79999999999999999998743 35555421 1111 12
Q ss_pred CCChhHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCcccc-HHHHHHHHHHHHHhhc
Q 019509 263 LPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPDY-EHIFTDFLLSLEQSKC 332 (340)
Q Consensus 263 ~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~~-~~~l~~~l~~~i~~~~ 332 (340)
++++++.+++|.++++++ |++++|||++++.+ | ++||+|||. .|+++|.+.. ...+++++.+.+.+..
T Consensus 253 ~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~ 324 (344)
T 2p0a_A 253 VAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-G-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLP 324 (344)
T ss_dssp ECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC
T ss_pred eCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhc
Confidence 344567899999999999 89999999998753 3 589999999 9999988753 5677778887776654
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.97 E-value=3.4e-29 Score=246.11 Aligned_cols=242 Identities=11% Similarity=0.130 Sum_probs=175.1
Q ss_pred HHHhCCCEEEEecCCCCCC-----CC-------CCccEEEEccCchh------hHHHHHHHHHhCCCeeecChHHHHHHh
Q 019509 51 LARNKGISFVAIDQNRPLS-----DQ-------GPFDVVLHKLSGME------WCKIIEDYRQKHPEVTILDPPDAIKHL 112 (340)
Q Consensus 51 ~a~~~gi~~~~id~~~~l~-----~q-------~~~DvilhK~t~~~------~~~~l~~~~~~~p~v~ViDp~~si~~~ 112 (340)
.++..+|++..++....+. +. ..+|++|.|..+.. ++..+. +.+ ..|++|||++++|.+|
T Consensus 146 qa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr-~lE-~~GvpviNs~~sI~~~ 223 (422)
T 1pk8_A 146 QAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVI-GLQ-YAGIPSVNSLHSVYNF 223 (422)
T ss_dssp EECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHH-HHH-HTTCCEESCHHHHHHT
T ss_pred HHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHH-HHH-HCCccccCCHHHHHHh
Confidence 4555667777666544311 11 25899999997643 343344 333 3689999999999999
Q ss_pred cCH----HHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhh
Q 019509 113 HNR----QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 188 (340)
Q Consensus 113 ~dR----~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~ 188 (340)
.|| ..++++|.++.+ +++|.|.+.... +. .+. ...++||+|+||+. || ++++|.++.+.++++
T Consensus 224 ~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~-~~---~~~--i~~~g~PvVvKp~~--GS-~G~GV~lve~~~~l~ 290 (422)
T 1pk8_A 224 CDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYP-NH---KEM--LSSTTYPVVVKMGH--AH-SGMGKVKVDNQHDFQ 290 (422)
T ss_dssp SSHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-SG---GGC--CCCSSSSEEEEESS--CC-TTTTEEEECSHHHHH
T ss_pred CCccHHHHHHHHHHHhCCC----CCCCCCceEecC-ch---hhh--hhccCCCEEEEeCC--CC-ceeCeEEeCCHHHHH
Confidence 999 567777777521 244844444442 21 121 13578999999998 76 889999999998877
Q ss_pred cc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCC
Q 019509 189 EL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIA 261 (340)
Q Consensus 189 ~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (340)
.+ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++|.+ .+.. .
T Consensus 291 ~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~WrtNvg---------------~g~~----e 346 (422)
T 1pk8_A 291 DIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKTNTG---------------SAML----E 346 (422)
T ss_dssp HHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSSTTSS---------------CEEE----E
T ss_pred HHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCceeccC---------------ceee----e
Confidence 53 56788999999 79999999999999999998743 35665421 1111 1
Q ss_pred CCCChhHHHHHHHHHHHHh-CCcEeEEEEEEecCcCCeEEEEeccC--CCCCCCcccc-HHHHHHHHHHHHHhhcc
Q 019509 262 ELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY--FPGYGKMPDY-EHIFTDFLLSLEQSKCR 333 (340)
Q Consensus 262 ~~p~~~~~~~lA~~~~~~l-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~~-~~~l~~~l~~~i~~~~~ 333 (340)
.++++++++++|.++++++ |++++|||+|++.+ | ++||+|||. .||++|.+.. ...+++++.+.+++.+.
T Consensus 347 ~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~~ 420 (422)
T 1pk8_A 347 QIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-G-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALP 420 (422)
T ss_dssp EECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-S-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC--
T ss_pred eeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-C-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhcc
Confidence 1234567899999999999 89999999998753 3 689999999 9999988753 67888888888877664
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.92 E-value=4.1e-24 Score=197.36 Aligned_cols=231 Identities=13% Similarity=0.141 Sum_probs=160.6
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCCC-------CCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHH
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLSD-------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~~-------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~ 116 (340)
....+.++++++|+++..+|.+..... ...+|+++++.........++++.+. -|++++++++++..+.||.
T Consensus 12 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (280)
T 1uc8_A 12 DERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACGDKW 90 (280)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHHBHH
T ss_pred HHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhCCHH
Confidence 344789999999999999998653311 34689556664432222344555544 4788889999999999999
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc------
Q 019509 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (340)
Q Consensus 117 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------ 190 (340)
.+.+.|.+. |||+|++..+. +.++..+.+ ..++||+|+||..++ .|+++.++.+.++|.+.
T Consensus 91 ~~~~~l~~~-------gi~~p~~~~~~-~~~~~~~~~--~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~~~~ 157 (280)
T 1uc8_A 91 ATSVALAKA-------GLPQPKTALAT-DREEALRLM--EAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXKEV 157 (280)
T ss_dssp HHHHHHHHT-------TCCCCCEEEES-SHHHHHHHH--HHHCSSEEEECSBCC---BCSHHHHHHHHHC----------
T ss_pred HHHHHHHHc-------CcCCCCeEeeC-CHHHHHHHH--HHhCCCEEEEECCCC---CcccceecccccccchhhhhHhh
Confidence 999999974 89999999885 332222222 346899999999844 46889889888776531
Q ss_pred -----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCC
Q 019509 191 -----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (340)
Q Consensus 191 -----~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 265 (340)
..++++||||+..+++++++++|+++.....+... +|..+ ++ . ++...|. + .
T Consensus 158 ~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~-----~~~~~-----~~---~------g~~~~p~--~--l 214 (280)
T 1uc8_A 158 LGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSA-----HWITN-----TA---R------GGQAENC--P--L 214 (280)
T ss_dssp --CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---------------------------------CEEC--C--C
T ss_pred hcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecC-----Ccccc-----cc---C------CccccCC--C--C
Confidence 46899999998768999999999997654333212 22211 00 0 1111111 1 1
Q ss_pred hhHHHHHHHHHHHHhCCcEeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 266 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 266 ~~~~~~lA~~~~~~lGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
.++++++|.++.++||++++|+|++++.+ ++||+|||..||+.++.
T Consensus 215 ~~~~~~~~~~~~~~lg~g~~~vD~~~~~~---g~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 215 TEEVARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTMEFKNSV 260 (280)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEEEEETT---EEEEEEEETTCCCTTHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEeCC---CeEEEEEeCCCCccchh
Confidence 34689999999999999999999999753 48999999999998754
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.92 E-value=1.1e-23 Score=200.10 Aligned_cols=259 Identities=14% Similarity=0.063 Sum_probs=170.2
Q ss_pred cEEEEEEec-CCCcccc---cchHHHHHHHhCCCEEEEecCCCCCCC---CCCccEEEEccCchhh-HHHHHHHHHhCCC
Q 019509 28 RLVVGYALT-SKKKKSF---LQPKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPE 99 (340)
Q Consensus 28 ~~~VG~~~~-~kK~~~~---~~~~l~~~a~~~gi~~~~id~~~~l~~---q~~~DvilhK~t~~~~-~~~l~~~~~~~p~ 99 (340)
..+|+..+- .+..+.. .-..+.++.++.|++++.||.+..... ...+|+++..+..... ...++.+.+. .|
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~-~g 91 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDF-YG 91 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHH-HT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHH-cC
Confidence 456666554 2333222 334678889999999999997654222 3579999998876421 1234555543 46
Q ss_pred eeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHH--hhCCCCcEEEecCCCCCCCcce
Q 019509 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF--EAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 100 v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~--~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
++++ ++++++..|+||..+.++|.++ |||+|++.++. +.++..+... ...++||+|+||..++ .|.
T Consensus 92 ip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~-~~~~~~~~~~~~~~~~g~PvvvKP~~~~---~s~ 160 (317)
T 4eg0_A 92 IRYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVM-RGDDYAARATDIVAKLGLPLFVKPASEG---SSV 160 (317)
T ss_dssp CEESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEE-TTSCHHHHHHHHHHHHCSCEEEEECC--------
T ss_pred CCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEE-CchhHHHHHHHHHHhcCCCEEEEeCCCC---CCC
Confidence 8887 6779999999999999999974 99999999996 3434333220 1457999999998744 468
Q ss_pred eeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeeccccccccc
Q 019509 177 ELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA 249 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (340)
++.++.+.++|.+. ..++++||||++ |+++.|.|+|+++..+...... .++|+|......+.
T Consensus 161 Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~----------~~~~~~~~k~~~g~ 229 (317)
T 4eg0_A 161 AVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA----------GEFYDYHAKYVAND 229 (317)
T ss_dssp CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-------------------------
T ss_pred CEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeC----------CceechhhcccCCC
Confidence 99999999887642 468999999975 9999999999974322111111 12333333221110
Q ss_pred c--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCcccc
Q 019509 250 S--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMPDY 316 (340)
Q Consensus 250 ~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 316 (340)
. ..+..+++ ...+.++++|.++.++||+. ++++|++++. +| ++||+|||..||+....-+
T Consensus 230 ~~~~~P~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 230 TQYLIPCGLPA-----EQETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp CEEESSCSSCH-----HHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTSHH
T ss_pred eeEEcCCCCCH-----HHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCcccHH
Confidence 0 01111111 01346899999999999996 8899999975 33 6999999999999976544
No 9
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.91 E-value=1.9e-23 Score=196.79 Aligned_cols=235 Identities=14% Similarity=0.159 Sum_probs=162.9
Q ss_pred chHHHHHHHhCCCEEEEecCCCC---CCCCCCccEEEEccCchhhH-HHHHHHHHhCCCeeecCh-HHHHHHhcCHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRP---LSDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSML 119 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~---l~~q~~~DvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~ 119 (340)
-..+.+++++.|++++.+|.+.. +.....+|+++......... ..++.+.+. .|++++.| ++++..++||..+.
T Consensus 24 ~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~ 102 (307)
T 3r5x_A 24 GNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISK 102 (307)
T ss_dssp HHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHH
Confidence 34577888899999999999853 23345799999998664321 123444433 46888865 99999999999999
Q ss_pred HHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CC
Q 019509 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EP 192 (340)
Q Consensus 120 ~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~ 192 (340)
++|.++ |||+|++.++.. .++.... ....++||+|+||..++ .|+++.++.+.++|... ..
T Consensus 103 ~~l~~~-------Gip~p~~~~~~~-~~~~~~~-~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~ 170 (307)
T 3r5x_A 103 KILRYE-------GIETPDWIELTK-MEDLNFD-ELDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDS 170 (307)
T ss_dssp HHHHHT-------TCCCCCEEEEES-SSCCCHH-HHHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCS
T ss_pred HHHHHC-------CCCCCCEEEEeC-hhhhhHH-HHHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCC
Confidence 999974 999999999964 3333221 12357899999998744 46899999999887653 57
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEEE-EeecCCCccchhhhccceeeeccccc-ccccccCCCCCCCCCCCCCChhHHH
Q 019509 193 PMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVS-SAAASADDADLDPGIAELPPRPLLE 270 (340)
Q Consensus 193 p~v~QEfI~h~G~~~KV~ViG~~v~~~-~R~sl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~ 270 (340)
++++||||+ |+++.|.|+|+++..+ .+... .++|+|.... ..+....+..+++ ...+.++
T Consensus 171 ~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~p~~l~~-----~~~~~i~ 232 (307)
T 3r5x_A 171 EVVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFFDYNAKYDDASTIEEVIELPA-----ELKERVN 232 (307)
T ss_dssp EEEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEETTEEEEEEEEEEEEECCCCH-----HHHHHHH
T ss_pred CEEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------CcccChhhcCCCCCCeEecCCCCH-----HHHHHHH
Confidence 899999996 8999999999986322 11110 1122222211 1111101111111 0124579
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 271 RLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 271 ~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
++|.++.++||+. ++++|+++++ | ++||+|||..||+.+.
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~ 273 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQA 273 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCcc
Confidence 9999999999998 9999999983 3 7999999999999865
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.90 E-value=8e-23 Score=196.88 Aligned_cols=233 Identities=16% Similarity=0.181 Sum_probs=158.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCC--------------------------------------CCCCCccEEEEccCchhhH-
Q 019509 47 KLEILARNKGISFVAIDQNRPL--------------------------------------SDQGPFDVVLHKLSGMEWC- 87 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l--------------------------------------~~q~~~DvilhK~t~~~~~- 87 (340)
.+.++.++.|+++++||.++.- ..+..+|++++-+......
T Consensus 26 ~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~ged 105 (346)
T 3se7_A 26 EVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGED 105 (346)
T ss_dssp HHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTS
T ss_pred HHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCC
Confidence 3566667789999999976532 0123579999988664321
Q ss_pred HHHHHHHHhCCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEec
Q 019509 88 KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP 166 (340)
Q Consensus 88 ~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP 166 (340)
..++.+.+. .|++++.+ +.++..++||..+.++|.++ |||+|++.++...... ....++||+|+||
T Consensus 106 g~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP 172 (346)
T 3se7_A 106 GAIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKP 172 (346)
T ss_dssp SHHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEE
T ss_pred hHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEe
Confidence 245555543 56877765 89999999999999999974 9999999999643211 2346899999999
Q ss_pred CCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCE----EEEEEeecCCCccchhhhcc
Q 019509 167 LVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKV 235 (340)
Q Consensus 167 ~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~----v~~~~R~sl~~~~~~~~~~~ 235 (340)
..++| |.++.++.+.++|.. .+.++++||||+ |+++.|.|+++. +..+.+... .
T Consensus 173 ~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~----------~ 237 (346)
T 3se7_A 173 ARSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITL----------S 237 (346)
T ss_dssp SSCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECC----------C
T ss_pred CCCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEec----------C
Confidence 97443 689999999988764 256899999996 999999999873 222222221 1
Q ss_pred ceeeec----ccccccccccCCCCCCCCCCCCCC--hhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCC
Q 019509 236 VSVFRF----PRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 236 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fP 308 (340)
.++|+| ...+..+.. ....|. .++. .++++++|.++.++||+ +++++|++++.+ | ++|++|||..|
T Consensus 238 ~~~~d~~q~~~~ky~~~~~---~~~~pa--~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~vlEiN~rP 310 (346)
T 3se7_A 238 HGFFKIHQESTPESGSDNS---AVTVPA--DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTED-G-KVVLNEVNTFP 310 (346)
T ss_dssp --------------CGGGS---CEESSC--CCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTT-S-CEEEEEEESSC
T ss_pred CCCcCcccchhccccCCCe---eEEeCC--CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCC-C-CEEEEEEeCCC
Confidence 234555 333221110 011111 1221 34689999999999999 688999999753 3 69999999999
Q ss_pred CCCCcc
Q 019509 309 GYGKMP 314 (340)
Q Consensus 309 g~~g~~ 314 (340)
|+.+..
T Consensus 311 G~t~~s 316 (346)
T 3se7_A 311 GMTSYS 316 (346)
T ss_dssp CCSTTC
T ss_pred CCCccc
Confidence 998654
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.90 E-value=2.3e-22 Score=188.35 Aligned_cols=236 Identities=17% Similarity=0.178 Sum_probs=161.5
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCCC---CCCccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQ 120 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~~---q~~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~ 120 (340)
..+.++++++|++++.+|.+..... ...+|+++.+....... ..++...+. .+++++ ++++++..+.||..+.+
T Consensus 24 ~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~~~~g~~~~~~~~~~dK~~~~~ 102 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGLPYTGSGVMASALSMDKLRSKL 102 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHH
Confidence 4689999999999999998753222 24689999987432100 123333333 367776 88999999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEecCCCChhhH------HHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc----
Q 019509 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ------VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---- 190 (340)
Q Consensus 121 ~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~------l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l---- 190 (340)
+|.++ |||+|++..+... +..+. -....++||+|+||..++ .|.++.++.+.++|...
T Consensus 103 ~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~~~gv~~v~~~~el~~~~~~~ 170 (306)
T 1iow_A 103 LWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG---SSVGMSKVVAENALQDALRLA 170 (306)
T ss_dssp HHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC---TTTTCEEESSGGGHHHHHHHH
T ss_pred HHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHH
Confidence 99974 9999999988632 22210 012468999999999744 46899999999887642
Q ss_pred ---CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC--C
Q 019509 191 ---EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--P 265 (340)
Q Consensus 191 ---~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~ 265 (340)
..++++||||+ |++++|.++|+++..+.+....+ +.++|......+.. ....|. .++ .
T Consensus 171 ~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~g~~---~~~~p~--~l~~~~ 233 (306)
T 1iow_A 171 FQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPSG----------TFYDYEAKFLSDET---QYFCPA--GLEASQ 233 (306)
T ss_dssp TTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECSS----------SSSCHHHHHTCSCC---EEESSC--CCCHHH
T ss_pred HhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeCC----------CeEchhheecCCCe---eEEcCC--CCCHHH
Confidence 57899999996 89999999999864333222111 11222110000000 001111 111 1
Q ss_pred hhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 266 RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 266 ~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
.+.++++|.++.++||+. ++++|++++. +| ++|++|||..||+.+.
T Consensus 234 ~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 234 EANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 246889999999999996 8999999974 33 6999999999998764
No 12
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.88 E-value=3.1e-22 Score=210.79 Aligned_cols=248 Identities=15% Similarity=0.153 Sum_probs=165.3
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCCCCCC---CCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHH
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRPLSDQ---GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~l~~q---~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~ 119 (340)
.+.+.++++|+++||+++.||++.++... ..+|.++. ..+.-.++..++..+.||..+.
T Consensus 428 ~S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk 489 (750)
T 3ln6_A 428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTK 489 (750)
T ss_dssp HHHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHH
Confidence 45678999999999999999998755532 12333322 1234557778999999999999
Q ss_pred HHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEe---Chhhhhc-------
Q 019509 120 QDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY---DRFSLSE------- 189 (340)
Q Consensus 120 ~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~---~~~~L~~------- 189 (340)
++|.+ +|||+|++.++. +.++..+.+ ...++||+|+||.. |+ .|.||.++. +.+++.+
T Consensus 490 ~lL~~-------~GIPvP~~~~~~-~~~ea~~~~-~~~~g~PvVVKP~~--G~-~G~GV~iv~~~~s~eel~~a~~~~~~ 557 (750)
T 3ln6_A 490 KILDE-------KHFPTPFGDEFT-DRKEALNYF-SQIQDKPIVVKPKS--TN-FGLGISIFKTSANLASYEKAIDIAFT 557 (750)
T ss_dssp HHHHH-------TTCCCCCCCCEE-TTTTHHHHH-HHSSSSCEEEEETT--CC-SSSSCEEESSCCCHHHHHHHHHHHHH
T ss_pred HHHHH-------CCcCCCCEEEEC-CHHHHHHHH-HHhcCCcEEEEeCC--CC-CCCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 99997 499999999886 444443332 24689999999986 43 468999998 7777653
Q ss_pred cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchh------hh--ccc----e--------------------
Q 019509 190 LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE------LA--KVV----S-------------------- 237 (340)
Q Consensus 190 l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~------~~--~~~----~-------------------- 237 (340)
....+++||||+ |++++|+|+||+++.+.++..+.+..++ .. .+. |
T Consensus 558 ~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l 635 (750)
T 3ln6_A 558 EDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLML 635 (750)
T ss_dssp HCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHH
T ss_pred hCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHH
Confidence 257899999996 9999999999999876555434322110 00 000 0
Q ss_pred ---eeeccccccc---------ccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEec------CcCCeE
Q 019509 238 ---VFRFPRVSSA---------AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREH------GMRDVF 299 (340)
Q Consensus 238 ---~~~~~~~~~~---------~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~------~~g~~~ 299 (340)
-++.++|-.. ++.+.++.......+ ..+.++++|.++++++|+.++|||++.++ ..++.+
T Consensus 636 ~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~--i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~~~ 713 (750)
T 3ln6_A 636 EQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNT--MDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKKNA 713 (750)
T ss_dssp HHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTT--SCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTTCC
T ss_pred HHcCCCccccCCCCCEEEEeecccccCCCceeecccc--CCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCCCe
Confidence 0011111100 011122221111011 23568999999999999999999999874 112257
Q ss_pred EEEeccCCCCCCCc--------cccHHHHHHHH
Q 019509 300 YVIDINYFPGYGKM--------PDYEHIFTDFL 324 (340)
Q Consensus 300 ~ViEVN~fPg~~g~--------~~~~~~l~~~l 324 (340)
+|||||..||+.+. .+....+.|+|
T Consensus 714 ~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 714 TCIELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp EEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred EEEEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 99999999998654 24456666655
No 13
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.87 E-value=6.8e-21 Score=185.73 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=162.6
Q ss_pred hHHHHHH-HhCCCEEEEecCCCC--------------------CC--------------------CCCCccEEEEccCch
Q 019509 46 PKLEILA-RNKGISFVAIDQNRP--------------------LS--------------------DQGPFDVVLHKLSGM 84 (340)
Q Consensus 46 ~~l~~~a-~~~gi~~~~id~~~~--------------------l~--------------------~q~~~DvilhK~t~~ 84 (340)
..+.++. ++.|+++++||.++. +. ....+|+||..+...
T Consensus 25 ~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~ 104 (377)
T 1ehi_A 25 QNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGN 104 (377)
T ss_dssp HHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCST
T ss_pred HHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccccccccCcchhhccccCCCEEEEecCCC
Confidence 3466777 888999999986531 10 023689999988543
Q ss_pred hhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCC---ChhhHHHhhCCC
Q 019509 85 EWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL---SIPDQVFEAGLK 159 (340)
Q Consensus 85 ~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~---~~~~~l~~~~l~ 159 (340)
... ..++...+. .|++++ ++++++..++||..+.++|.+ .|||+|++.++.+..+ ...+. ...++
T Consensus 105 ~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~--~~~~g 174 (377)
T 1ehi_A 105 LGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTV-------NGIRNTKYIVVDPESANNWSWDKI--VAELG 174 (377)
T ss_dssp TTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHT-------TTCCCCCEEEECTTGGGGCCHHHH--HHHHC
T ss_pred CCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCEEEEeccccchHHHHHH--HHhcC
Confidence 211 135555543 578888 999999999999999999997 4999999999863211 12221 23578
Q ss_pred CcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCC-eEEEEEEECCE---EEEEEeecCCCcc
Q 019509 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVS 228 (340)
Q Consensus 160 ~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G-~~~KV~ViG~~---v~~~~R~sl~~~~ 228 (340)
||+|+||..++| |.+|.++.+.++|.. .+.++++||||+ | +++.|.|+|+. +....+......+
T Consensus 175 ~PvvVKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~~ 249 (377)
T 1ehi_A 175 NIVFVKAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLVSEIGAHTVPNQG 249 (377)
T ss_dssp SCEEEEESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEEEEEEEEECTTSS
T ss_pred CCEEEEeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEEEeeEEEEecCCC
Confidence 999999997443 689999999988764 256899999995 8 99999999884 4433322211000
Q ss_pred chhhhccceeeecccccccc-c--ccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEec
Q 019509 229 KRELAKVVSVFRFPRVSSAA-A--SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDI 304 (340)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEV 304 (340)
...++|+|......+ . ...+..+++ ...+.++++|.++.++||+. +++||++++. +| ++||+||
T Consensus 250 -----~~~~~~d~~~k~~~g~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEi 317 (377)
T 1ehi_A 250 -----SGDGWYDYNNKFVDNSAVHFQIPAQLSP-----EVTKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEP 317 (377)
T ss_dssp -----SSSCCCCHHHHTTCCTTCEEESSCCCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEE
T ss_pred -----CcCceeCHHhcccCCCCeeEEeCCCCCH-----HHHHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEE
Confidence 012344443322111 0 001111111 01356899999999999997 8889999974 33 6999999
Q ss_pred cCCCCCCCc
Q 019509 305 NYFPGYGKM 313 (340)
Q Consensus 305 N~fPg~~g~ 313 (340)
|..||+...
T Consensus 318 N~rpg~t~~ 326 (377)
T 1ehi_A 318 NTLPGFTNM 326 (377)
T ss_dssp ESSCCCSTT
T ss_pred eCCCCCCcc
Confidence 999998765
No 14
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.87 E-value=1.9e-21 Score=188.31 Aligned_cols=236 Identities=14% Similarity=0.145 Sum_probs=154.2
Q ss_pred hHHHHHHHhCCCEEEEecCCCC------------------CC-----------------CCCCccEEEEccCchhh-HHH
Q 019509 46 PKLEILARNKGISFVAIDQNRP------------------LS-----------------DQGPFDVVLHKLSGMEW-CKI 89 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~------------------l~-----------------~q~~~DvilhK~t~~~~-~~~ 89 (340)
..+.++.++.|++++.||.+.. +. ....+|+|+..+.+... ...
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed~~ 104 (364)
T 2i87_A 25 QNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGT 104 (364)
T ss_dssp HHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCTTH
T ss_pred HHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhcccccccccccccccccccccCCCEEEEeCCCCCCcCHH
Confidence 3456667778888888875421 11 12358999988743211 013
Q ss_pred HHHHHHhCCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCC------ChhhHHHhhCCCCcE
Q 019509 90 IEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL------SIPDQVFEAGLKLPL 162 (340)
Q Consensus 90 l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~------~~~~~l~~~~l~~Pv 162 (340)
++...+. .|++++.+ ++++..++||..+.++|.++ |||+|++..+..... .+.+ ....++||+
T Consensus 105 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~--~~~~~g~Pv 174 (364)
T 2i87_A 105 IQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEYEKYEHNILKL--VNDKLNYPV 174 (364)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHHHHHHHHHHHH--HHHHCCSSE
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhhcccchhHHHH--HHHhcCCCE
Confidence 4444433 46888765 89999999999999999975 999999999863210 1111 123589999
Q ss_pred EEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCE---EEEEEeecCCCccchhh
Q 019509 163 VAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKREL 232 (340)
Q Consensus 163 VvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~~~R~sl~~~~~~~~ 232 (340)
|+||..++| |.+|.++.+.++|... +.++++||||+ |+++.|.|+|+. +....+.
T Consensus 175 vvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~e~---------- 239 (364)
T 2i87_A 175 FVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGNDYPEATWPGEV---------- 239 (364)
T ss_dssp EEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESSSCEECCCEEE----------
T ss_pred EEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCCCcEEeeeEEE----------
Confidence 999997443 6799999999887642 57899999996 899999999885 2111111
Q ss_pred hccceeeecccccccccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 233 AKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
....++|+|......+.. ....|. .++ ..+.++++|.++.++||+ ++++||++++. +| ++||+|||..||
T Consensus 240 ~~~~~~~~~~~k~~~g~~---~~~~pa--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg 312 (364)
T 2i87_A 240 VKDVAFYDYKSKYKDGKV---QLQIPA--DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DN-QIYINETNAMPG 312 (364)
T ss_dssp CCSCCC-----------C---CEESSC--SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCC
T ss_pred ecCCCcCCHHHcccCCCe---eEEeCC--CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCCC
Confidence 111234444332211110 001111 112 134689999999999999 68899999974 33 699999999999
Q ss_pred CCCc
Q 019509 310 YGKM 313 (340)
Q Consensus 310 ~~g~ 313 (340)
+...
T Consensus 313 ~t~~ 316 (364)
T 2i87_A 313 FTAF 316 (364)
T ss_dssp CSTT
T ss_pred CCch
Confidence 9755
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.86 E-value=5.7e-21 Score=187.11 Aligned_cols=259 Identities=15% Similarity=0.153 Sum_probs=160.7
Q ss_pred CcEEEEEEec-CCCcccc---cchHHHHHHHhCCCEEEEecCCCC------------------CCCC-------------
Q 019509 27 ERLVVGYALT-SKKKKSF---LQPKLEILARNKGISFVAIDQNRP------------------LSDQ------------- 71 (340)
Q Consensus 27 ~~~~VG~~~~-~kK~~~~---~~~~l~~~a~~~gi~~~~id~~~~------------------l~~q------------- 71 (340)
.+.+|+..+= .|-.+.. +-....++.++.|+++++||.++. +...
T Consensus 36 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
T 3k3p_A 36 SKETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSD 115 (383)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGG
T ss_pred cCCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccc
Confidence 3456777552 3333232 223466667788999999997642 0000
Q ss_pred --CCccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCc-cccCcEEEEecCC
Q 019509 72 --GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGK-VRVPRQMVITKDS 146 (340)
Q Consensus 72 --~~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~-I~~P~~~~~~~~~ 146 (340)
..+|++|.-+...... ..++.+.+. .|++++ .++.++..++||..+.++|.++ | ||+|++.++...
T Consensus 116 ~~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~- 186 (383)
T 3k3p_A 116 IYEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEG- 186 (383)
T ss_dssp GCCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETT-
T ss_pred cccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCc-
Confidence 1579999887654211 245666644 567766 5789999999999999999985 8 999999999643
Q ss_pred CChhhHH--HhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEE
Q 019509 147 LSIPDQV--FEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIK 217 (340)
Q Consensus 147 ~~~~~~l--~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~ 217 (340)
+...+.+ ....++||+|+||..++| |.++.++.+.++|.+. +..+++||||+ |+++.|.|+|+.-.
T Consensus 187 ~~~~~~~~~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~ 261 (383)
T 3k3p_A 187 EPLESKLAEVEEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDV 261 (383)
T ss_dssp SCHHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSC
T ss_pred cchhHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCe
Confidence 2221111 234689999999986443 6899999999888642 56899999996 99999999987521
Q ss_pred EEEeecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecC
Q 019509 218 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHG 294 (340)
Q Consensus 218 ~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~ 294 (340)
.+ +.+ .+.....++|+|...+..+.. ..++.+++ ...+.++++|.++.++||+. ++++|++++.
T Consensus 262 ~~---~~~----~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 328 (383)
T 3k3p_A 262 KT---TLP----GEIVKDVAFYDYEAKYIDNKITMAIPAEIDP-----VIVEKMRDYAATAFRTLGCCGLSRCDFFLTE- 328 (383)
T ss_dssp EE---CCC----EEEC-----------------CEESSCCCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-
T ss_pred eE---Eee----EEEecCCCccchhhcccCCCeeEEecCCCCH-----HHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-
Confidence 10 101 111112345666554432211 01111111 02346899999999999997 7789999975
Q ss_pred cCCeEEEEeccCCCCCCCc
Q 019509 295 MRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 295 ~g~~~~ViEVN~fPg~~g~ 313 (340)
+| ++||+|||..||+...
T Consensus 329 ~g-~~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 329 DG-KVYLNELNTMPGFTQW 346 (383)
T ss_dssp TC-CEEEEEEESSCCCC--
T ss_pred CC-CEEEEEeeCCCCCCcc
Confidence 33 6999999999998854
No 16
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.86 E-value=4.8e-21 Score=185.38 Aligned_cols=215 Identities=15% Similarity=0.215 Sum_probs=144.5
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC-h
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 149 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-~ 149 (340)
.+|+++.=+...... ..+|.+.+. .|++.+ -++.++..|+||..+.++|.++ |||+|++..+.+.... .
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 357776655443211 235666554 567766 6789999999999999999974 9999999988642211 1
Q ss_pred hhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEee
Q 019509 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRF 222 (340)
Q Consensus 150 ~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~ 222 (340)
.+. ....++||+|+||..++ .|.+|.++.+.++|.+. +.++++|+|| .|+.+-|.|+|+.-..+.
T Consensus 169 ~~~-~~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKE-IEANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHH-HHHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHH-HHHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 111 23469999999998633 36899999999998652 5679999999 599999999988632211
Q ss_pred cCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeE
Q 019509 223 SLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVF 299 (340)
Q Consensus 223 sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~ 299 (340)
+- .+.....++|+|...+..+.. ..+..+++. ..++++++|.++.++||+. +++||++++. +| ++
T Consensus 241 --~v---~~~~~~~~~~d~~~k~~~~~~~~~~pa~l~~~-----~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~ 308 (357)
T 4fu0_A 241 --RV---DEIELSSGFFDYTEKYTLKSSKIYMPARIDAE-----AEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EI 308 (357)
T ss_dssp --CC---EEEEECHHHHTSCSBCSSCCEEEESSCSCCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CE
T ss_pred --EE---EEEEcccccccccccccCCCceEecCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CE
Confidence 10 011111234455444332211 112222211 1356899999999999995 7789999974 34 79
Q ss_pred EEEeccCCCCCCCccc
Q 019509 300 YVIDINYFPGYGKMPD 315 (340)
Q Consensus 300 ~ViEVN~fPg~~g~~~ 315 (340)
||+|||..||+....-
T Consensus 309 ~vlEvNt~PG~t~~S~ 324 (357)
T 4fu0_A 309 VFNEVNTIPGFTSHSR 324 (357)
T ss_dssp EEEEEESSCCCSTTCH
T ss_pred EEEEEeCCCCCCcccH
Confidence 9999999999986443
No 17
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.85 E-value=1.3e-20 Score=180.91 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=140.2
Q ss_pred CccEEEEccCchhh-HHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChh
Q 019509 73 PFDVVLHKLSGMEW-CKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (340)
Q Consensus 73 ~~DvilhK~t~~~~-~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~ 150 (340)
.+|+||..+..... -..++.+.+. .+++++ .+++++..++||..+.++|.++ |||+|++..+.+. +...
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~ 160 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKD-DRPV 160 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTT-CCCC
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEech-hhhh
Confidence 46777776643211 0134555443 467776 6799999999999999999974 9999999998633 2221
Q ss_pred hHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCE--EEE--E
Q 019509 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGET--IKV--V 219 (340)
Q Consensus 151 ~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~--v~~--~ 219 (340)
. ..++||+|+||..++| |.+|.++.+.++|.. .+.++++||||+ |+++.|.|+++. +.+ .
T Consensus 161 ~----~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~ 231 (343)
T 1e4e_A 161 A----ATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEV 231 (343)
T ss_dssp G----GGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCC
T ss_pred h----hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeee
Confidence 1 4689999999997443 578999999988764 257899999996 999999999764 211 1
Q ss_pred EeecCCCccchhhhccceeeecccccc----cccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCC-cEeEEEEEEe
Q 019509 220 RRFSLPNVSKRELAKVVSVFRFPRVSS----AAASADDADLDPGIAELP--PRPLLERLARELRHRLGL-RLFNIDMIRE 292 (340)
Q Consensus 220 ~R~sl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl-~l~GvDvi~~ 292 (340)
.+.. ...++|+|..... .+... ..-|. .++ ..+.++++|.++.++||+ +++++|++++
T Consensus 232 ~ei~----------~~~~~~~~~~k~~~~~~~g~~~---~~~p~--~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 232 DQIR----------LQYGIFRIHQEVEPEKGSENAV---ITVPA--DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEE----------ESSSCCCGGGSSSGGGCCSSEE---ECSSC--SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEe----------eCCCccCHhhcccccCCCCCee---EEeCC--CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 1111 0112344443222 11100 01111 122 134689999999999999 5889999997
Q ss_pred cCcCCeEEEEeccCCCCCCCc
Q 019509 293 HGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 293 ~~~g~~~~ViEVN~fPg~~g~ 313 (340)
. +| ++||+|||..||+...
T Consensus 297 ~-~g-~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 297 D-NG-RIVLNEVNTLPGFTSY 315 (343)
T ss_dssp T-TC-CEEEEEEESSCCCSTT
T ss_pred C-CC-CEEEEEeeCCCCCCcc
Confidence 4 34 6999999999999854
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.85 E-value=3.5e-20 Score=176.79 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=144.8
Q ss_pred CCCccEEEEccCchhhH-HHHHHHHHhCCCeeecC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC
Q 019509 71 QGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (340)
Q Consensus 71 q~~~DvilhK~t~~~~~-~~l~~~~~~~p~v~ViD-p~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~ 148 (340)
...+|+||..+...... ..++...+. .|++++. +++++..++||..+.++|.++ |||+|++..+.+..+
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~- 144 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEP- 144 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSC-
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchh-
Confidence 34689999998543111 134444433 4688774 599999999999999999974 999999999864322
Q ss_pred hhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCC-eEEEEEEECCE---EE
Q 019509 149 IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGG-ILFKIYIIGET---IK 217 (340)
Q Consensus 149 ~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G-~~~KV~ViG~~---v~ 217 (340)
+. . .++||+|+||..++| |.++.++.+.++|.+. +.++++||||+ | +++.|.|+|++ +.
T Consensus 145 --~~--~-~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 145 --PV--V-PFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp --CC--C-CSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred --hh--h-ccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 11 1 689999999997443 6899999999887642 56899999995 8 99999999985 32
Q ss_pred EEEeecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019509 218 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 294 (340)
Q Consensus 218 ~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~ 294 (340)
...+... ..++|+|......+.. ..+..+++ ...++++++|.++.++||+ +++++|++++
T Consensus 215 ~~~ei~~----------~~~~~~~~~k~~~g~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-- 277 (322)
T 2fb9_A 215 PVGEVRY----------EAPFYDYETKYTPGRAELLIPAPLDP-----GTQETVQELALKAYKVLGVRGMARVDFFLA-- 277 (322)
T ss_dssp EEEEEEE----------ECCEEETTTEEECCEEEEESSCCCCT-----THHHHHHHHHHHHHHHHTCCSEEEEEEEEE--
T ss_pred eeEEEee----------CCCccCHHHcccCCCeEEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCceEEEEEEEEE--
Confidence 2221110 0123444332221110 11222221 1235789999999999999 8999999997
Q ss_pred cCCeEEEEeccCCCCCCCcc
Q 019509 295 MRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 295 ~g~~~~ViEVN~fPg~~g~~ 314 (340)
+| ++||+|||..||+....
T Consensus 278 ~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 278 EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp TT-EEEEEEEESSCCCSSSC
T ss_pred CC-cEEEEEEECCCCCCccc
Confidence 33 79999999999998654
No 19
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.85 E-value=6.9e-20 Score=177.80 Aligned_cols=210 Identities=12% Similarity=0.177 Sum_probs=143.9
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeecC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCC---C
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS---L 147 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~ViD-p~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~---~ 147 (340)
.+|+++.=+.+.... ..++.+.+. .|++++. ++.++..++||..+.++|.+. |||+|++.++.... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRHAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGGGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccchh
Confidence 579998877543211 245666654 5788775 479999999999999999974 99999999996432 0
Q ss_pred ChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccCCCeEEEEEEECCEE---E
Q 019509 148 SIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETI---K 217 (340)
Q Consensus 148 ~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h~G~~~KV~ViG~~v---~ 217 (340)
+..+. ...++||+|+||..++| |.++.++.+.++|... +.++++||||+ |+++.|.|+|+.- .
T Consensus 170 ~~~~~--~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~ 242 (364)
T 3i12_A 170 SFAEV--ESRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQAS 242 (364)
T ss_dssp CHHHH--HHHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEEE
T ss_pred hHHHH--HHhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceEe
Confidence 33222 24578999999986443 5899999999887642 56899999995 8999999998762 2
Q ss_pred EEEeecCCCccchhhhccceeeeccccccccc---ccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEec
Q 019509 218 VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREH 293 (340)
Q Consensus 218 ~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~ 293 (340)
...+.. + ..++|+|...+..+. ...+..+++ ...++++++|.++.++||+ +++++|++++.
T Consensus 243 ~~~ei~-~---------~~~~~~~~~ky~~~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 243 TCGEIV-L---------NSEFYAYDTKYIDDNGAQVVVPAQIPS-----EVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEE-C---------CTTCC--TTTTSGGGGCEEESSCSSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred eeEEEe-c---------CCCccCHHHcccCCCceEEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 211111 1 123445544332211 011222211 1134689999999999999 57789999974
Q ss_pred CcCCeEEEEeccCCCCCCCcc
Q 019509 294 GMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 294 ~~g~~~~ViEVN~fPg~~g~~ 314 (340)
+| ++|++|||..||+....
T Consensus 308 -~g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DN-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp -TC-CEEEEEEESSCCCSTTC
T ss_pred -CC-CEEEEEeeCCCCCCCCC
Confidence 33 69999999999998653
No 20
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.85 E-value=1.9e-20 Score=182.74 Aligned_cols=215 Identities=9% Similarity=0.110 Sum_probs=140.0
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC--
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-- 148 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-- 148 (340)
.+|++|+-+.+.... ..++.+.+. .|++++ .++.++..++||..+.++|.++ |||+|++.++......
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 589999888664221 246666654 578776 5689999999999999999974 9999999999643321
Q ss_pred hhhHHHhhCCCCc-EEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 019509 149 IPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVR 220 (340)
Q Consensus 149 ~~~~l~~~~l~~P-vVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~ 220 (340)
.... ....++|| +|+||..++ .|.+|.++.+.++|.. .+.++++||||+ |+++.|.|+|+.-.
T Consensus 170 ~~~~-~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQR-LLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHH-HHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHH-HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 1111 23468999 999998643 3689999999988764 257899999996 99999999988611
Q ss_pred eecCCCccchhhhccceeeeccccccccc---ccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcC
Q 019509 221 RFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMR 296 (340)
Q Consensus 221 R~sl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g 296 (340)
+- ++. ++.....++|+|...+..+. ...+..+++ ...+.++++|.++.++||+. +++||++++. +|
T Consensus 241 ~~-~~~---~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg 310 (372)
T 3tqt_A 241 KA-SLP---GEIIPHHDYYSYDAKYLDPNGATTTTSVDLSE-----SVTKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN 310 (372)
T ss_dssp EE-CCC---EEEECC---------------CEEESCCCCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC
T ss_pred eE-eee---EEEecCCCccchhhcccCCCceEEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC
Confidence 00 111 11111234556654433221 011122211 01346899999999999997 7789999975 34
Q ss_pred CeEEEEeccCCCCCCCccc
Q 019509 297 DVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 297 ~~~~ViEVN~fPg~~g~~~ 315 (340)
++||+|||..|||+...-
T Consensus 311 -~~~vlEINt~PG~t~~S~ 328 (372)
T 3tqt_A 311 -KVLVNEINTIPGFTNISM 328 (372)
T ss_dssp -CEEEEEEESSCCCSTTCH
T ss_pred -cEEEEEEECCCCcCccCH
Confidence 699999999999986543
No 21
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.85 E-value=1.9e-20 Score=183.47 Aligned_cols=258 Identities=12% Similarity=0.167 Sum_probs=165.4
Q ss_pred CCCcEEEEEEec-CCCcccccc---hHHHHHHHhCCCEEEEecCCCCC--------------------------------
Q 019509 25 QPERLVVGYALT-SKKKKSFLQ---PKLEILARNKGISFVAIDQNRPL-------------------------------- 68 (340)
Q Consensus 25 ~~~~~~VG~~~~-~kK~~~~~~---~~l~~~a~~~gi~~~~id~~~~l-------------------------------- 68 (340)
.+.+.+|++.+= .|-.+..+. ....++.++.|+++++||.++.-
T Consensus 19 ~m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (386)
T 3e5n_A 19 HMRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALL 98 (386)
T ss_dssp --CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEEC
T ss_pred hcCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeec
Confidence 345677877653 233333222 23566667789999999965420
Q ss_pred --------------CCCCCccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCC
Q 019509 69 --------------SDQGPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNG 132 (340)
Q Consensus 69 --------------~~q~~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~ 132 (340)
.....+|+++.=+.+.... ..++.+.+. .|++++ .++.++..++||..+.++|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~------- 170 (386)
T 3e5n_A 99 PGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA------- 170 (386)
T ss_dssp TTCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT-------
T ss_pred cCccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------
Confidence 0123578888877654221 135666544 567765 6789999999999999999974
Q ss_pred ccccCcEEEEecCC---CChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------CCCeEEEecccC
Q 019509 133 KVRVPRQMVITKDS---LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNH 202 (340)
Q Consensus 133 ~I~~P~~~~~~~~~---~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~v~QEfI~h 202 (340)
|||+|++.++.... ....+ ....++||+|+||..++| |.++.++.+.++|... +.++++||||+
T Consensus 171 GIp~p~~~~~~~~~~~~~~~~~--~~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~- 244 (386)
T 3e5n_A 171 RLAVAPFVCFDRHTAAHADVDT--LIAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA- 244 (386)
T ss_dssp TCCBCCEEEEEHHHHTTCCHHH--HHHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC-
T ss_pred CCCCCCEEEEeCcccchhhHHH--HHHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC-
Confidence 99999999986321 12222 223579999999997443 5899999999887642 56799999996
Q ss_pred CCeEEEEEEECCEE-EE--EEeecCCCccchhhhccceeeeccccccccc---ccCCCCCCCCCCCCCChhHHHHHHHHH
Q 019509 203 GGILFKIYIIGETI-KV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAA---SADDADLDPGIAELPPRPLLERLAREL 276 (340)
Q Consensus 203 ~G~~~KV~ViG~~v-~~--~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~lA~~~ 276 (340)
|+++.|.|+|+.. .+ ..+.. + ..++|+|......+. ...+..+++ ...++++++|.++
T Consensus 245 -G~E~~v~vl~~~~~~~~~~gei~-~---------~~~~~d~~~ky~~~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~ 308 (386)
T 3e5n_A 245 -GREIECAVLGNAVPHASVCGEVV-V---------HDAFYSYATKYISEHGAEIVIPADIDA-----QTQQRIQQIAVQA 308 (386)
T ss_dssp -SEEEEEEEECSSSCEEEEEEEEC-C--------------------------CEESSCSSCH-----HHHHHHHHHHHHH
T ss_pred -CeEEEEEEEeCCCceEEEeEEEE-e---------CCcccchhcccCCCCCeEEEECCCCCH-----HHHHHHHHHHHHH
Confidence 8999999999862 11 11111 1 123455544332110 001122211 1134689999999
Q ss_pred HHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCcc
Q 019509 277 RHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 277 ~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 314 (340)
.++||+. ++++|++++. +| ++|++|||..||+....
T Consensus 309 ~~aLg~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 309 YQALGCAGMARVDVFLCA-DG-RIVINEVNTLPGFTRIS 345 (386)
T ss_dssp HHHHTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred HHHhCCccEEEEEEEEEC-CC-cEEEEEeECCCCCCccC
Confidence 9999997 7889999975 33 69999999999998653
No 22
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.85 E-value=7.6e-21 Score=200.03 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=164.9
Q ss_pred cccchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCC-eeecChHHHHHHhcCHHHHHH
Q 019509 42 SFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQ 120 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~-v~ViDp~~si~~~~dR~~~~~ 120 (340)
..+.+.++++|+++|++++.|+++.++...+.-|.+ .++. ++ ...-++..++..+.||..+.+
T Consensus 432 ~~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~ig---------------~~~~t~~~s~~aa~~~~DK~~tk~ 495 (757)
T 3ln7_A 432 ELSTQALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYVK---------------NGNMTSHDSYISPLIMENKVVTKK 495 (757)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEEE---------------TTTBCSSSBSHHHHHHHHSHHHHH
T ss_pred CCCHHHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eeec---------------cCccCCCCHHHHHHHhcCHHHHHH
Confidence 345668999999999999999998866543322222 1110 22 234477889999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEE----eChhhhhc-------
Q 019509 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA----YDRFSLSE------- 189 (340)
Q Consensus 121 ~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv----~~~~~L~~------- 189 (340)
+|.+. |||+|++.++. +.++..+. ....++||+|+||..++ .|.||.++ .+.+++.+
T Consensus 496 lL~~~-------GIPvP~~~~~~-~~~ea~~~-~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~ 563 (757)
T 3ln7_A 496 VLQKA-------GFNVPQSVEFT-SLEKAVAS-YALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFR 563 (757)
T ss_dssp HHHHH-------TCCCCCEEEES-CHHHHHHG-GGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHC-------CcCCCCEEEEC-CHHHHHHH-HHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHh
Confidence 99984 99999999885 32222221 11468999999998733 46899998 78877754
Q ss_pred cCCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhc--------cc----e---e----------------
Q 019509 190 LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAK--------VV----S---V---------------- 238 (340)
Q Consensus 190 l~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~--------~~----~---~---------------- 238 (340)
.+..+++||||+ |++++|+|+||+++.+.++..+++..++..+ +. | .
T Consensus 564 ~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L 641 (757)
T 3ln7_A 564 EDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQL 641 (757)
T ss_dssp HCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHH
T ss_pred cCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHH
Confidence 257899999995 8999999999999876555444332111000 00 0 0
Q ss_pred ----eecccccccc---------cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeEEEEEEecC------cCCeE
Q 019509 239 ----FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDVF 299 (340)
Q Consensus 239 ----~~~~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~GvDvi~~~~------~g~~~ 299 (340)
++.++|...| +.+.++.......+ ..+.++++|.++++++|+.++||||+.++- .++++
T Consensus 642 ~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~--i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~~~ 719 (757)
T 3ln7_A 642 KEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDE--MHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLTSW 719 (757)
T ss_dssp HHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTT--SCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTTTC
T ss_pred HHcCCCccccCCCCCEEEeecccccccCccceecccc--CCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCCCe
Confidence 0111111111 11122222111011 245689999999999999999999998731 11257
Q ss_pred EEEeccCCCCCCCc--------cccHHHHHHHH
Q 019509 300 YVIDINYFPGYGKM--------PDYEHIFTDFL 324 (340)
Q Consensus 300 ~ViEVN~fPg~~g~--------~~~~~~l~~~l 324 (340)
.|||||..||+.+. .+....+.++|
T Consensus 720 ~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 720 GVIEANFNPMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp EEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred EEEEEcCCcchhhhhccccCCCCchHHHHHHHh
Confidence 99999999997654 24456666655
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.84 E-value=9.6e-20 Score=177.31 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=150.8
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChh
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~ 150 (340)
.+|++|..+...... ..++.+.+. .|++++ .+++++..++||..+.++|.++ |||+|++.++.+ .+ ..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~-~~-~~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNE-KN-RA 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECT-TT-GG
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeC-Cc-hH
Confidence 478888876653211 135555544 578876 7799999999999999999985 999999999863 22 11
Q ss_pred hHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCC-eE---EEEEEECCEEEE-
Q 019509 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGG-IL---FKIYIIGETIKV- 218 (340)
Q Consensus 151 ~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G-~~---~KV~ViG~~v~~- 218 (340)
+......++||+|+||..++| |.++.++.+.++|.+ .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 177 ~~~~~~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~~ 250 (367)
T 2pvp_A 177 NALDLMNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCFS 250 (367)
T ss_dssp GHHHHCCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEEE
T ss_pred HHHHHhccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEEE
Confidence 111134689999999987443 688999999988764 256899999995 7 89 78888 887433
Q ss_pred EEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHhCCc-EeEEEEEEecCc
Q 019509 219 VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGM 295 (340)
Q Consensus 219 ~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~ 295 (340)
..+.. + ..++|+|......+.. ....|. .++ ..++++++|.++.++||+. ++++|++++ +
T Consensus 251 ~~ei~-~---------~~~~~d~~~ky~~g~~---~~~~Pa--~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~ 313 (367)
T 2pvp_A 251 YIEEP-N---------KQEFLDFKQKYLDFSR---NKAPKA--SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--E 313 (367)
T ss_dssp EEEET-T---------TTEEECCCCSSCCSCC---CSCCCC--CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--T
T ss_pred EEEEe-c---------CCceEcccccccCCCe---eEEecC--CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--C
Confidence 22322 1 1245666543322210 011121 122 1356899999999999985 889999997 2
Q ss_pred CCeEEEEeccCCCCCCCccccHHHHHHHHHHHHHh
Q 019509 296 RDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQS 330 (340)
Q Consensus 296 g~~~~ViEVN~fPg~~g~~~~~~~l~~~l~~~i~~ 330 (340)
| ++||+|||..||+.+..-++ -+.+.+.+++..
T Consensus 314 g-~~~vlEiN~rpg~t~~s~~p-~~~~l~~~li~~ 346 (367)
T 2pvp_A 314 N-EVYLNEINPIPGSLANYLFD-DFKTTLENLAQS 346 (367)
T ss_dssp T-EEEEEEEESSCGGGGGGGSS-SHHHHHHHHHHH
T ss_pred C-eEEEEEEeCCCCCCcccccC-CHHHHHHHHHhC
Confidence 3 79999999999987544333 344555555544
No 24
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.82 E-value=5.8e-20 Score=179.18 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=144.1
Q ss_pred CccEEEEccCchhhH-HHHHHHHHhCCCeeecCh-HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCC-h
Q 019509 73 PFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-I 149 (340)
Q Consensus 73 ~~DvilhK~t~~~~~-~~l~~~~~~~p~v~ViDp-~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-~ 149 (340)
.+|++|+=+.+.... ..++.+.+. .|++++.+ +.++..++||..+.++|.++ |||+|++.++...... .
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccchh
Confidence 589998887543110 235555543 46887776 89999999999999999974 9999999999643321 1
Q ss_pred hhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhc-------cCCCeEEEecccCCCeEEEEEEECCEE---EE-
Q 019509 150 PDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI---KV- 218 (340)
Q Consensus 150 ~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~v~QEfI~h~G~~~KV~ViG~~v---~~- 218 (340)
.+ ....++||+|+||..++| |.++.++.+.++|.. .+.++++||||+ |+++.|.|+|+.- .+
T Consensus 181 ~~--~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~ 253 (373)
T 3lwb_A 181 RQ--ECERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTLEAS 253 (373)
T ss_dssp HH--HHHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCEEEC
T ss_pred HH--HHHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCceEEe
Confidence 22 234689999999987443 689999999988764 257899999996 9999999998751 11
Q ss_pred -EEeecCCCccchhhhccceeeecccccccccc--cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecC
Q 019509 219 -VRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS--ADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHG 294 (340)
Q Consensus 219 -~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~ 294 (340)
..+....+. .+ ....+|+|...+..+.. ..++.+++ ...++++++|.++.++||+ +++++|++++.
T Consensus 254 ~~~ei~~~~~--~~--~~~~~~d~~~ky~~~~~~~~~Pa~l~~-----~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 323 (373)
T 3lwb_A 254 TLGEIRVAGV--RG--REDSFYDFATKYLDDAAELDVPAKVDD-----QVAEAIRQLAIRAFAAIDCRGLARVDFFLTD- 323 (373)
T ss_dssp CCEEEECCST--TC--SEESSSCHHHHHTCTTCEEESSCCCCH-----HHHHHHHHHHHHHHHHTTCCSEEEEEEEEET-
T ss_pred eeeEEEccCC--CC--ccccccchhhcccCCCceEEeCCCCCH-----HHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 111110000 00 00014554443221110 01111211 1135689999999999999 68899999985
Q ss_pred cCCeEEEEeccCCCCCCCcc
Q 019509 295 MRDVFYVIDINYFPGYGKMP 314 (340)
Q Consensus 295 ~g~~~~ViEVN~fPg~~g~~ 314 (340)
+| . ||+|||..||+....
T Consensus 324 dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp TE-E-EEEEEESSCCCSTTS
T ss_pred CC-C-EEEEecCCCCCCccc
Confidence 34 6 999999999988644
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.80 E-value=6.3e-19 Score=165.04 Aligned_cols=236 Identities=12% Similarity=0.122 Sum_probs=153.6
Q ss_pred ccchHHHHHHHhCCCEEEEecCCCCC-C-----------------------------CCCCccEEEEccCchh---h--H
Q 019509 43 FLQPKLEILARNKGISFVAIDQNRPL-S-----------------------------DQGPFDVVLHKLSGME---W--C 87 (340)
Q Consensus 43 ~~~~~l~~~a~~~gi~~~~id~~~~l-~-----------------------------~q~~~DvilhK~t~~~---~--~ 87 (340)
.....+.++++++|+++..+|++..- . ....+|+|+.+..... + .
T Consensus 19 ~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~ 98 (316)
T 1gsa_A 19 DSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYA 98 (316)
T ss_dssp CHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHH
T ss_pred ChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHH
Confidence 44457899999999999999875311 0 0124789998875431 1 1
Q ss_pred HHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecC
Q 019509 88 KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPL 167 (340)
Q Consensus 88 ~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~ 167 (340)
..+.+..+. .|++++|+++++..+.||..+.+.|. ++|+|.++. +.+++.+.+. .++ |+|+||.
T Consensus 99 ~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~--~~~-p~vvKP~ 162 (316)
T 1gsa_A 99 TYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWE--KHS-DIILKPL 162 (316)
T ss_dssp HHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHH--HHS-SEEEECS
T ss_pred HHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHH--HcC-CEEEEEC
Confidence 123333333 46888999999999999988766532 899999885 3322323222 245 9999999
Q ss_pred CCCCCCcceeeEEEe-Chhhhhc-------c-CCCeEEEecccCC-CeEEEEEEECCEEEE--EEeecCCCccchhhhcc
Q 019509 168 VVDGSAKSHELFLAY-DRFSLSE-------L-EPPMLLQEFVNHG-GILFKIYIIGETIKV--VRRFSLPNVSKRELAKV 235 (340)
Q Consensus 168 ~a~Gs~~sh~m~iv~-~~~~L~~-------l-~~p~v~QEfI~h~-G~~~KV~ViG~~v~~--~~R~sl~~~~~~~~~~~ 235 (340)
. |+ .|+++.++. +.++|.. . ..++++||||+.. +.+++++++|+++.. +.|.+.. ++|.++
T Consensus 163 ~--g~-~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~~ 235 (316)
T 1gsa_A 163 D--GM-GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRGN 235 (316)
T ss_dssp S--CC-TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCCC
T ss_pred C--CC-CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCceeE
Confidence 7 43 568999998 7766543 2 3689999999853 799999999999764 4554321 122211
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHH---hCCcEeEEEEEEecCcCCeEEEEeccC-C-CCC
Q 019509 236 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHR---LGLRLFNIDMIREHGMRDVFYVIDINY-F-PGY 310 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~---lGl~l~GvDvi~~~~~g~~~~ViEVN~-f-Pg~ 310 (340)
.+. ++...|. + ..+.++++|.+++++ +|+.++|+|++ | . ||+|||. + ||+
T Consensus 236 --------~~~------gg~~~~~--~--~~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~ 290 (316)
T 1gsa_A 236 --------LAA------GGRGEPR--P--LTESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCI 290 (316)
T ss_dssp --------GGG------TCEEEEE--E--CCHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCH
T ss_pred --------Ecc------CCccccC--C--CCHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcch
Confidence 111 1111110 1 124578999999977 59999999998 3 3 7999999 5 587
Q ss_pred CCcc-----ccHHHHHHHHHH
Q 019509 311 GKMP-----DYEHIFTDFLLS 326 (340)
Q Consensus 311 ~g~~-----~~~~~l~~~l~~ 326 (340)
..+. ++...+.+++..
T Consensus 291 ~~~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 291 REIEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp HHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHhhCcCHHHHHHHHHHH
Confidence 6443 234444444443
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.74 E-value=3.3e-16 Score=151.82 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=148.4
Q ss_pred chHHHHHHHhCCCEEEEecCCCCC--CCC-------------------CCccEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 45 QPKLEILARNKGISFVAIDQNRPL--SDQ-------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l--~~q-------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
.+.+.++++++|++++.+|++..- ... ..+|+|+.-.... . ..+.++.++ .|+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~-~~~~~~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHI-D-VQTLKKLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCS-C-HHHHHHHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCC-C-HHHHHHHHH-CCCeEC
Confidence 346888899999999999985321 110 1356666532221 1 222233333 467778
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
++++++..+.||..+.+.|.++ |||+|++..+. +.+ + ....++||+|+||..++ -.|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~---~--~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~ 154 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVK-DLE---S--DVREFGFPVVQKARKGG--YDGRGVFIIKN 154 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECS-SHH---H--HHHTTCSSEEEEESCCC-------EEEECS
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeC-CHH---H--HHHhcCCCEEEEecCCC--CCCCCeEEECC
Confidence 9999999999999999999974 99999999875 221 1 22468999999998643 13689999999
Q ss_pred hhhhhcc-CCCeEEEecccCCCeEEEEEEECC---EEEEEEe-ecCCCccchhhhccceeeecccccccccccCCCCCCC
Q 019509 184 RFSLSEL-EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRR-FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (340)
Q Consensus 184 ~~~L~~l-~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R-~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (340)
.+++... ..++++||||+. |+++.|.++++ ++.+... ... +. ...+.++.. . .+..+++
T Consensus 155 ~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~~-------~-~p~~l~~ 218 (380)
T 3ax6_A 155 EKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDTV-------I-APARIEE 218 (380)
T ss_dssp GGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE-------E-ESCSSCH
T ss_pred HHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEEE-------E-CCCCCCH
Confidence 9998764 478999999963 89999999964 4443211 111 00 001111100 0 0111111
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 259 GIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 259 ~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
...++++++|.++.++||+ +++++|++++. +| +++|+|||.-||..+
T Consensus 219 -----~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 219 -----KYSKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred -----HHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 0134689999999999999 58899999975 33 699999999999754
No 27
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.73 E-value=5e-16 Score=152.89 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=117.4
Q ss_pred CCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCccee
Q 019509 98 PEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (340)
Q Consensus 98 p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~ 177 (340)
-+++- .++++++.++||..+.+.|.++ |||+|++..+. +.+++ ....++||+|+||.. |+ .|.+
T Consensus 97 lglpg-~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~----~~~~~g~P~vvKp~~--g~-gs~G 160 (425)
T 3vot_A 97 LNLPG-LPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFH-TLADL----ENRKLSYPLVVKPVN--GF-SSQG 160 (425)
T ss_dssp TTCSS-CCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEES-SGGGG----TTCCCCSSEEEEESC--C------
T ss_pred cCCCC-CCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccC-cHHHH----HHhhcCCcEEEEECC--CC-CCCC
Confidence 34443 5689999999999999999974 99999999985 32222 235789999999986 33 5789
Q ss_pred eEEEeChhhhhcc------------------CCCeEEEecccCCCeEEEE--EEECCEEEE--EEeecCCCccchhhhcc
Q 019509 178 LFLAYDRFSLSEL------------------EPPMLLQEFVNHGGILFKI--YIIGETIKV--VRRFSLPNVSKRELAKV 235 (340)
Q Consensus 178 m~iv~~~~~L~~l------------------~~p~v~QEfI~h~G~~~KV--~ViG~~v~~--~~R~sl~~~~~~~~~~~ 235 (340)
|.++.+.++|.+. +.++++||||+ |..|-| ++.++++.+ +.++....- ... .
T Consensus 161 v~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~~---~~~-~ 234 (425)
T 3vot_A 161 VVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSKG---PFF-E 234 (425)
T ss_dssp CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCCC---SBC-C
T ss_pred ceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccCC---Ccc-c
Confidence 9999999887542 45799999995 777655 455666543 233221110 000 0
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC--cEeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 236 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
.+.+ ..+..+++ ...+.+.++|.++.++||+ +++.+|++++. +| ++|++|||.-||-.++
T Consensus 235 ~~~~-----------~~Pa~l~~-----~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~ 296 (425)
T 3vot_A 235 EGVY-----------IAPAQLKE-----ETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGV 296 (425)
T ss_dssp CCEE-----------EESCCCCH-----HHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGH
T ss_pred cceE-----------eecccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCc
Confidence 0000 00111211 0134578999999999997 48889999975 34 6999999999986655
Q ss_pred cc
Q 019509 314 PD 315 (340)
Q Consensus 314 ~~ 315 (340)
+.
T Consensus 297 ~~ 298 (425)
T 3vot_A 297 SH 298 (425)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 28
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.73 E-value=3.3e-16 Score=152.66 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=155.4
Q ss_pred CcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC---------------------CccEEEEccCchh
Q 019509 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG---------------------PFDVVLHKLSGME 85 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~---------------------~~DvilhK~t~~~ 85 (340)
+..+||....-. ....+.++++++|++++.+|++..-.... ..|+|..-. ...
T Consensus 13 ~~k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~-e~~ 86 (389)
T 3q2o_A 13 PGKTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF-ENI 86 (389)
T ss_dssp TTSEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC-CCC
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc-ccc
Confidence 344666655432 34578999999999999999764211111 234432111 111
Q ss_pred hHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEe
Q 019509 86 WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAK 165 (340)
Q Consensus 86 ~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvK 165 (340)
....++. .+++ ++ +-.+++++..+.||..+.+.|.++ |||+|++..+. +.+++.+. ...++||+|+|
T Consensus 87 ~~~~~~~-l~~~-g~-~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvK 153 (389)
T 3q2o_A 87 DYRCLQW-LEKH-AY-LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQ-NQEQLTEA--IAELSYPSVLK 153 (389)
T ss_dssp CHHHHHH-HHHH-SC-CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHHH--HHHHCSSEEEE
T ss_pred cHHHHHH-HHhh-Cc-cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHH--HHhcCCCEEEE
Confidence 1122333 3232 23 668899999999999999999974 99999999885 33233332 23578999999
Q ss_pred cCCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhccce
Q 019509 166 PLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVS 237 (340)
Q Consensus 166 P~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~ 237 (340)
|..+.| .+++|.++.++++|.+. ..++++||||+ +++++.|.++++ ++.++ +-. +.....+
T Consensus 154 p~~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~---e~~~~~g 222 (389)
T 3q2o_A 154 TTTGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVA---ENIHVNN 222 (389)
T ss_dssp ESSCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCE---EEEEETT
T ss_pred eCCCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCe---eeEEcCC
Confidence 987332 36899999999998754 47999999997 349999999965 33221 100 0000011
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
.+... ..+..+++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.+
T Consensus 223 ~~~~~--------~~p~~l~~~-----~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 223 ILHES--------IVPARITEE-----LSQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHNSG 283 (389)
T ss_dssp EEEEE--------EESCSSCHH-----HHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGG
T ss_pred ceEEE--------ECCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCCch
Confidence 11100 011112111 1356899999999999996 8889999974 33 699999999998653
No 29
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.72 E-value=1.6e-16 Score=153.44 Aligned_cols=225 Identities=12% Similarity=0.090 Sum_probs=148.2
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC--CCC------------------CCccEEEEccCchhhHHHHHHHHHhCCCeeecCh
Q 019509 46 PKLEILARNKGISFVAIDQNRPL--SDQ------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l--~~q------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp 105 (340)
+.+.++++++|++++.+|++..- ... ..+|+|+.-.... ....++.+ ++ .| ++-++
T Consensus 12 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l-~~-~g-~~g~~ 87 (369)
T 3aw8_A 12 RMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAARRL-EG-RL-PLYPP 87 (369)
T ss_dssp HHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHHHH-HH-HS-CBSSC
T ss_pred HHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHHHH-HH-cC-CcCCC
Confidence 45777888899999988875321 110 2468877654332 22333333 33 24 67789
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCC-CCCcceeeEEEeCh
Q 019509 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDR 184 (340)
Q Consensus 106 ~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~-Gs~~sh~m~iv~~~ 184 (340)
++++..+.||..+.+.|.++ |||+|++..+. +.+++.+ ....++||+|+||..++ | |.+|.++.+.
T Consensus 88 ~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~~~~~---g~Gv~~v~~~ 154 (369)
T 3aw8_A 88 AKALEVAQDRLREKTFFQGL-------GVPTPPFHPVD-GPEDLEE--GLKRVGLPALLKTRRGGYD---GKGQALVRTE 154 (369)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEES-SHHHHHH--HHTTTCSSEEEEECCC---------EEEECSH
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeC-CHHHHHH--HHHHcCCCEEEEEcCCCCC---cceEEEECCH
Confidence 99999999999999999985 99999999885 3322222 13468999999998744 4 5799999999
Q ss_pred hhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhccceeeecccccccccccCCCC-
Q 019509 185 FSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD- 255 (340)
Q Consensus 185 ~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 255 (340)
++|.+. ..++++||||+. |+++.|.++++ ++.+. +-.. .+. ..++++... .+..
T Consensus 155 ~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~~--~~~-~~~~~~~~~--------~p~~~ 217 (369)
T 3aw8_A 155 EEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFY-----PLVE--NRH-WGGILRLSL--------APAPG 217 (369)
T ss_dssp HHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEEC-----CCEE--EEE-ETTEEEEEE--------ESCTT
T ss_pred HHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEE-----CCee--eee-eCCEEEEEE--------CCCCC
Confidence 887653 468999999963 89999999974 44331 1000 000 011111100 0111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCC
Q 019509 256 LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGK 312 (340)
Q Consensus 256 ~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 312 (340)
+++ ...+.++++|.++.++||+. ++++|++.+. + +++++|||.-||..+
T Consensus 218 l~~-----~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~ 267 (369)
T 3aw8_A 218 ASE-----ALQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSG 267 (369)
T ss_dssp CCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGG
T ss_pred CCH-----HHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCcc
Confidence 111 01346799999999999996 7889999975 3 699999999998754
No 30
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.72 E-value=1.7e-16 Score=154.83 Aligned_cols=231 Identities=17% Similarity=0.185 Sum_probs=147.6
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC---------------C---------CCCCccEEEEccCchhhHHHHHHHHHhCCCee
Q 019509 46 PKLEILARNKGISFVAIDQNRPL---------------S---------DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l---------------~---------~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ 101 (340)
.+++++|+++|++++.+|...+. . ....+|+|+.-..+. ....+.+..++ -|+
T Consensus 20 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~-~~~~~a~~~~~-~gl- 96 (403)
T 4dim_A 20 LGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDT-GIVSLARICDK-ENL- 96 (403)
T ss_dssp HHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCST-THHHHHHHHHH-HTC-
T ss_pred HHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcch-hHHHHHHHHHH-cCc-
Confidence 46899999999999999853211 0 123578887642222 22333333332 345
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEE
Q 019509 102 ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (340)
Q Consensus 102 ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv 181 (340)
+-+++++++.+.||..+.++|.++ |||+|++..+. +.++..+ ....++||+|+||..+. +|.+|.++
T Consensus 97 ~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~--~~~~~g~P~vvKp~~g~---gg~Gv~~v 163 (403)
T 4dim_A 97 VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKN--ALENLKLPVIVKATDLQ---GSKGIYIA 163 (403)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHH--HHHTSCSSEEEECSCC--------CEEE
T ss_pred CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHH--HHhcCCCCEEEEECCCC---CCCCEEEE
Confidence 368899999999999999999985 99999998774 3222222 23468999999998743 56899999
Q ss_pred eChhhhhcc---------CCCeEEEecccCCCeEEE--EEEECCEEEEEEeecCCCccchhhhccceeeecccccccccc
Q 019509 182 YDRFSLSEL---------EPPMLLQEFVNHGGILFK--IYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS 250 (340)
Q Consensus 182 ~~~~~L~~l---------~~p~v~QEfI~h~G~~~K--V~ViG~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (340)
.+.++|.+. ..++++||||+ |..|- +++.++++.+..... +.. . .+.+. ... + .
T Consensus 164 ~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~-----~-~~~~~---~~~-~-~ 228 (403)
T 4dim_A 164 KKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DET-----Y-MSHTA---VPV-G-H 228 (403)
T ss_dssp SSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEE-----E-ESSSE---EEE-E-E
T ss_pred CCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--cee-----c-cCCCC---cce-e-E
Confidence 999987652 36799999996 66554 455678766532110 000 0 00000 000 0 0
Q ss_pred cCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCCCCCccc
Q 019509 251 ADDADLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPGYGKMPD 315 (340)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 315 (340)
..+..+++ ...+.+.++|.++.++||+. .+++|++.++ +++|++|||.-||-.+++.
T Consensus 229 ~~p~~l~~-----~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~---~~~~~iEiN~R~~~~~~~~ 287 (403)
T 4dim_A 229 YVPLDVKD-----DIIEKTKTEVKKAIKALGLNNCAVNVDMILKD---NEVYIIELTGRVGANCLPE 287 (403)
T ss_dssp EESCCSCH-----HHHHHHHHHHHHHHHHHTCCSEEEEEEEEEET---TEEEEEEEESSCCSTTHHH
T ss_pred EeCCCCCH-----HHHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC---CcEEEEEEcCCCCCCcHHH
Confidence 00111111 11356789999999999997 5789999973 3799999999999776553
No 31
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.71 E-value=1.2e-16 Score=156.95 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=155.2
Q ss_pred CCcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCC--CCCCCC-CccEEEEccCchh-----------------
Q 019509 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNR--PLSDQG-PFDVVLHKLSGME----------------- 85 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~--~l~~q~-~~DvilhK~t~~~----------------- 85 (340)
++..+||....- .....+.++|+++|++++.+| .. |..... .+..+.....+..
T Consensus 22 m~~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e 95 (403)
T 3k5i_A 22 WNSRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIE 95 (403)
T ss_dssp CSCCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSS
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCC
Confidence 345567766543 133468999999999999999 42 111111 1122222222211
Q ss_pred --hHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEec-CCCChhhHHHhhCCCCcE
Q 019509 86 --WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK-DSLSIPDQVFEAGLKLPL 162 (340)
Q Consensus 86 --~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~-~~~~~~~~l~~~~l~~Pv 162 (340)
....+ +..++ ++++..++++++.+.||..+.+.|.++ |||+|++..+.. +.+++.+ ....++||+
T Consensus 96 ~~~~~~l-~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~--~~~~~g~P~ 163 (403)
T 3k5i_A 96 HVDTYAL-EEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAK--VGEQLGYPL 163 (403)
T ss_dssp CSCHHHH-HHHTT--TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHH--HHHHHCSSE
T ss_pred CCCHHHH-HHHHc--CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHH--HHHHhCCCE
Confidence 11112 22333 778899999999999999999999874 999999998852 1222222 123578999
Q ss_pred EEecCCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEeecCCCccchhhhccce
Q 019509 163 VAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVS 237 (340)
Q Consensus 163 VvKP~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~~v~~~~R~sl~~~~~~~~~~~~~ 237 (340)
|+||..++ ..|+++.++.++++|.+. ..++++||||+ .|+++.|.++++.-.+. ..|.. +.....+
T Consensus 164 VvKp~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~---~~p~~---~~~~~~g 234 (403)
T 3k5i_A 164 MLKSKTMA--YDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVL---SYPTV---ETVQEDS 234 (403)
T ss_dssp EEEESSSC--CTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEE---ECCCE---EEEEETT
T ss_pred EEEeCCCC--cCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEE---EeCCe---eeEEeCC
Confidence 99998632 246899999999887653 46899999996 37999999997631110 01110 0000111
Q ss_pred eeecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 238 VFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
.+.... .+.. +++. ..+.++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.|.
T Consensus 235 ~~~~~~--------~Pa~~l~~~-----~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~ 297 (403)
T 3k5i_A 235 ICKLVY--------APARNVSDA-----INQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGH 297 (403)
T ss_dssp EEEEEE--------ESCSSCCHH-----HHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGT
T ss_pred EEEEEE--------eCCCCCCHH-----HHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCc
Confidence 111000 0111 1110 1346789999999999985 7789999974 33 6999999999997643
No 32
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.71 E-value=4.7e-16 Score=149.88 Aligned_cols=206 Identities=21% Similarity=0.336 Sum_probs=139.3
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCC-----C-----------------CCCccEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 46 PKLEILARNKGISFVAIDQNRPLS-----D-----------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~-----~-----------------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
..+..+|+++|++++.+|.+..-. + ...+|+|+.-...... ..+.....+..++++.
T Consensus 14 ~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~~~~~~g 92 (363)
T 4ffl_A 14 FEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEKFSCPVL 92 (363)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGGCSSCBC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHHCCCccC
Confidence 357889999999999999754211 1 0235666654433222 2233333455678888
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
.++++++.+.||..+.+.|.++ |||+|.+. .++||+|+||..+. .|.+|.++.+
T Consensus 93 ~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~~----------------~ig~P~vvKp~~g~---g~~gv~~v~~ 146 (363)
T 4ffl_A 93 FDFEAYRISRDKKKSKDYFKSI-------GVPTPQDR----------------PSKPPYFVKPPCES---SSVGARIIYD 146 (363)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHT-------TCCCCCBS----------------CSSSCEEEECSSCC---TTTTCEEEC-
T ss_pred CCHHHHHHhhCHHHHHHHHHhc-------CCCCCCce----------------ecCCCEEEEECCCC---CCcCeEEecc
Confidence 9999999999999999999984 89998542 36899999998633 4689999999
Q ss_pred hhhhhccCCCeEEEecccCCCeEEEEEEECCE--EEEE--EeecCCCccchhhhccceeeecccccccccccCCCCCCCC
Q 019509 184 RFSLSELEPPMLLQEFVNHGGILFKIYIIGET--IKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 259 (340)
Q Consensus 184 ~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~~--v~~~--~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (340)
.+++......+++||||. |..+-|.++++. ..+. .+....+ .... ...
T Consensus 147 ~~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~-------~~~--- 198 (363)
T 4ffl_A 147 DKDLEGLEPDTLVEEYVE--GEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC-------HMV--- 198 (363)
T ss_dssp -----CCCTTCEEEECCC--SEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-------EEE---
T ss_pred HHHhhhhccchhhhhhcc--CcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-------eee---
Confidence 999999999999999994 899988888553 2221 1111000 0000 000
Q ss_pred CCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019509 260 IAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINY-FPGY 310 (340)
Q Consensus 260 ~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~-fPg~ 310 (340)
.+.+..++++++|.+++++||+. ++++|++.+. +++||+|||. |||.
T Consensus 199 -~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~---~~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 199 -TPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP---KGLRVIEIDARFPSQ 247 (363)
T ss_dssp -EECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET---TEEEEEEEECSCCSS
T ss_pred -cchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC---CeEEEEEEeCCCCCC
Confidence 11123466899999999999986 6679999975 2699999999 7874
No 33
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.71 E-value=9.3e-16 Score=149.27 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=153.8
Q ss_pred cEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCCC-C--------------------CCccEEEEccCchhh
Q 019509 28 RLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSD-Q--------------------GPFDVVLHKLSGMEW 86 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~-q--------------------~~~DvilhK~t~~~~ 86 (340)
..+||..-.-. .-..+.++|+++|++++.+|++..-.. + ..+|+|..-.. ...
T Consensus 12 ~~~IlIlG~G~-----lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E-~~~ 85 (377)
T 3orq_A 12 GATIGIIGGGQ-----LGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFE-NIS 85 (377)
T ss_dssp TCEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESST-TSC
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceeccc-ccC
Confidence 34566554321 234689999999999999998532110 0 12455432221 111
Q ss_pred HHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEec
Q 019509 87 CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP 166 (340)
Q Consensus 87 ~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP 166 (340)
...+....+. . .+..++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+. ...++||+|+||
T Consensus 86 ~~~l~~l~~~-~--~v~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp 152 (377)
T 3orq_A 86 AQQLKLLCEK-Y--NIPQGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVK-ESTDIDKA--IETLGYPFIVKT 152 (377)
T ss_dssp HHHHHHHHHH-S--CCTTTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEEC-SSTHHHHH--HHHTCSSEEEEE
T ss_pred HHHHHHHhhh-c--CCCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHH--HHHcCCCEEEEe
Confidence 2333333333 2 4557889999999999999999874 99999999885 34333332 235899999999
Q ss_pred CCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCC-eEEEEEEE-C--CEEEEEEeecCCCccchhhhccce
Q 019509 167 LVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGG-ILFKIYII-G--ETIKVVRRFSLPNVSKRELAKVVS 237 (340)
Q Consensus 167 ~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G-~~~KV~Vi-G--~~v~~~~R~sl~~~~~~~~~~~~~ 237 (340)
..++ ..|+++.++.+.++|.+. ..++++||||+ | +++.|.++ + +++.++ |-. +.....+
T Consensus 153 ~~gg--~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g 220 (377)
T 3orq_A 153 RFGG--YDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQ 220 (377)
T ss_dssp SSSC--CTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETT
T ss_pred CCCC--CCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECC
Confidence 8632 257899999999887653 47899999996 6 89999999 3 233331 110 0000011
Q ss_pred eeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.+... ..+..+ +..+.++++|.++.++||+. +++||++++.+ | ++||+|||.-||-.
T Consensus 221 ~~~~~--------~~Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~-g-~~~v~EinpR~~~s 278 (377)
T 3orq_A 221 ILFKT--------IVPARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSN-N-QLYVNEIAPRPHNS 278 (377)
T ss_dssp EEEEE--------EESCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEETT-C-CEEEEEEESSCCGG
T ss_pred EEEEE--------ECCCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCC-C-cEEEEEeeCCcCCC
Confidence 11100 011111 12567899999999999996 88999999742 3 69999999999943
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.69 E-value=7.6e-17 Score=155.37 Aligned_cols=219 Identities=12% Similarity=0.133 Sum_probs=128.7
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCC--CC--------------CCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLS--DQ--------------GPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDA 108 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~--~q--------------~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~s 108 (340)
...+.++++++|+++..+|.+.... .. ..+|+|+....+.. ...+ +..+. ++.+++++
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~~~-~~l~~----~~g~~~~~ 86 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DEVL-EKCES----KLIPNPQA 86 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HHHH-HHHTT----TBSSCTHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HHHH-HHHhh----hcCCCHHH
Confidence 3468889999999999999864221 10 24688887654332 2323 33322 67789999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCC-CCCcceeeEEEeChhhh
Q 019509 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD-GSAKSHELFLAYDRFSL 187 (340)
Q Consensus 109 i~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~-Gs~~sh~m~iv~~~~~L 187 (340)
++.+.||..+.+.|.+ .|||+|++..+. .+++.+. ...++||+|+||..++ | |.++.++.+.+++
T Consensus 87 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~--~~~~~~~--~~~~~~P~vvKp~~~~~~---g~Gv~~v~~~~el 152 (365)
T 2z04_A 87 LYVKKSRIREKLFLKK-------HGFPVPEFLVIK--RDEIIDA--LKSFKLPVVIKAEKLGYD---GKGQYRIKKLEDA 152 (365)
T ss_dssp HHHHTCHHHHHHHHHT-------TTCCCCCEEEC------------------CEEEECC---------------------
T ss_pred HHHhhCHHHHHHHHHH-------cCCCCCCEEEEc--HHHHHHH--HHhcCCCEEEEEcCCCcC---CCCeEEECCHHHH
Confidence 9999999999999997 499999999875 3233322 2357899999998744 4 5789999999887
Q ss_pred hcc------CCCeEEEecccCCCeEEEEEEECC---EEEEE--EeecCCCccchhhhccceeeecccccccccccCCCCC
Q 019509 188 SEL------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 256 (340)
Q Consensus 188 ~~l------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~--~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (340)
.+. ..++++||||+. |+++.|.++++ ++.+. .+. +. ..++++.. .
T Consensus 153 ~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~---------~~-~~~~~~~~-------------~ 208 (365)
T 2z04_A 153 NQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFN---------KH-EEGILIYN-------------Y 208 (365)
T ss_dssp ------------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEE---------EE-ETTEEEEE-------------E
T ss_pred HHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEE---------EE-eCCEeEEE-------------E
Confidence 653 357999999974 89999999963 44331 111 00 01111110 0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 257 DPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 257 ~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
.|. +..+.+++++.++.++||+. ++++|++.+. +| +++++|||.-||..+.
T Consensus 209 ~p~----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 209 VPY----AKLKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGH 260 (365)
T ss_dssp EEE----ECCHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGT
T ss_pred CCH----hHHHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCce
Confidence 010 01356899999999999995 7889999974 33 6999999999987543
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.69 E-value=3.1e-16 Score=152.19 Aligned_cols=228 Identities=11% Similarity=0.157 Sum_probs=148.6
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCC--------------C---------CCCccEEEEccCchhhHHHHHHHHHhCCCee
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLS--------------D---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~--------------~---------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ 101 (340)
...+.++++++|+++..+|....-. + ...+|+|+.-.... ..+.+ +..++ .|++
T Consensus 23 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~-~~l~~-~gi~ 99 (391)
T 1kjq_A 23 GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDML-IQLEE-EGLN 99 (391)
T ss_dssp HHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHH-HHHHH-TTCE
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHH-HHHHh-CCCC
Confidence 3468899999999999999753111 0 12567777643221 12222 22333 4677
Q ss_pred ecChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 102 ILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 102 ViDp~~si~~~~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
+.+++++++.+.||..+.+.| .+ .|||+|++..+. +.+++.+. ...++||+|+||.. |+ .|.+|.+
T Consensus 100 ~~~~~~~~~~~~dK~~~~~~l~~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--g~-gg~Gv~~ 166 (391)
T 1kjq_A 100 VVPCARATKLTMNREGIRRLAAEE-------LQLPTSTYRFAD-SESLFREA--VADIGYPCIVKPVM--SS-SGKGQTF 166 (391)
T ss_dssp ESSCHHHHHHHHSHHHHHHHHHTT-------SCCCBCCEEEES-SHHHHHHH--HHHHCSSEEEEESC--C----CCCEE
T ss_pred cCCCHHHHHHhhCHHHHHHHHHHh-------CCCCCCCeeeeC-CHHHHHHH--HHhcCCCEEEEeCC--CC-CCCCeEE
Confidence 889999999999999999998 55 499999999885 33223222 23478999999986 33 5789999
Q ss_pred EeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCccchhhhccceeeeccccccc
Q 019509 181 AYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (340)
Q Consensus 181 v~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~ViG~--~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~ 247 (340)
+.+.++|... ..++++||||+. |.++.|.++++ .+.. .+.. +... ..+.+ ...
T Consensus 167 v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~-----~~~~--~~~~-~~~~~--~~~--- 232 (391)
T 1kjq_A 167 IRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHF-----CAPV--GHRQ-EDGDY--RES--- 232 (391)
T ss_dssp ECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEE-----CCCE--EEEE-ETTEE--EEE---
T ss_pred ECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEE-----ccCc--ceEE-ECCEE--EEE---
Confidence 9999887531 468999999974 89999988843 3221 1100 0000 00111 000
Q ss_pred ccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 248 AASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 248 ~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
. .+..+++ ...+.+.++|.++.++||+ +++++|++++.+ ++||+|||.-||-.+.
T Consensus 233 --~-~p~~l~~-----~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 233 --W-QPQQMSP-----LALERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp --E-ECCCCCH-----HHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred --E-eCCCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 0 0111111 0134689999999999999 788899999752 6999999999996544
No 36
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.68 E-value=2e-15 Score=149.25 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=155.5
Q ss_pred CcEEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCC-----C---C-------------CCccEEEEccCchh
Q 019509 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLS-----D---Q-------------GPFDVVLHKLSGME 85 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~-----~---q-------------~~~DvilhK~t~~~ 85 (340)
+..+||..-.- ...+.++.+|+++|++++.+|.+..-. + . ..+|+|+.-.. ..
T Consensus 34 ~~~~IlIlG~G-----~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e-~~ 107 (419)
T 4e4t_A 34 PGAWLGMVGGG-----QLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFE-NV 107 (419)
T ss_dssp TTCEEEEECCS-----HHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCT-TC
T ss_pred CCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccC-cC
Confidence 34566665532 123468999999999999999753110 0 0 13577763221 11
Q ss_pred hHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhC----CCCc
Q 019509 86 WCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG----LKLP 161 (340)
Q Consensus 86 ~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~----l~~P 161 (340)
....+.. .++. .++..++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+. ... + ||
T Consensus 108 ~~~~~~~-l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~-~~~e~~~~--~~~~~~~~-~P 173 (419)
T 4e4t_A 108 PAASLDF-LART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIE-SAAALAAL--DDAALDAV-LP 173 (419)
T ss_dssp CHHHHHH-HHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEEC-SHHHHHTS--CHHHHHTT-CS
T ss_pred CHHHHHH-HHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEEC-CHHHHHHH--HHhhcccc-CC
Confidence 2233333 3344 47889999999999999999999874 99999999885 32222221 123 7 99
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEeecCCCccchhhh
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELA 233 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~ 233 (340)
+|+||.. .|+ .++++.++.++++|... +.++++||||+. ++.+.|.++++ .+.++ |-. +..
T Consensus 174 ~VvKp~~-~g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~~-----~~~---e~~ 242 (419)
T 4e4t_A 174 GILKTAR-LGY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAAF-----PLA---QNV 242 (419)
T ss_dssp EEEEESS-SCC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEEC-----CCE---EEE
T ss_pred EEEEecC-CCC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEEE-----eCe---EEE
Confidence 9999982 243 57899999999987653 468999999973 78899999953 23221 100 000
Q ss_pred ccceeeecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 234 KVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
...+.+.... .+.. +++. ..+.++++|.++.++||+. +++||++++. +| ++||+|||.-|+-.
T Consensus 243 ~~~g~~~~~~--------~Pa~~l~~~-----~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 243 HHNGILALTI--------VPAPAADTA-----RVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNS 307 (419)
T ss_dssp EETTEEEEEE--------ESCTTCCHH-----HHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGG
T ss_pred eeCCeEEEEE--------cCCCCCCHH-----HHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCC
Confidence 0011111000 0111 1110 1356889999999999986 8889999975 33 69999999999965
Q ss_pred C
Q 019509 312 K 312 (340)
Q Consensus 312 g 312 (340)
+
T Consensus 308 g 308 (419)
T 4e4t_A 308 G 308 (419)
T ss_dssp G
T ss_pred C
Confidence 4
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.67 E-value=9.1e-16 Score=151.36 Aligned_cols=230 Identities=13% Similarity=0.181 Sum_probs=146.7
Q ss_pred chHHHHHHHhCCCEEEEecCCCCC--------------CC---------CCCccEEEEccCchhhHHHHHHHHHhCCCee
Q 019509 45 QPKLEILARNKGISFVAIDQNRPL--------------SD---------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l--------------~~---------q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ 101 (340)
...+.++++++|+++..+|.+..- .+ ...+|+|+.-.... ....+. ..++ .|++
T Consensus 31 g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~-~~~~~~-~l~~-~gi~ 107 (433)
T 2dwc_A 31 GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAI-NLDALF-EFEK-DGYF 107 (433)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHHH-HHHH-TTCC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccC-CHHHHH-HHHh-cCCe
Confidence 346888999999999999975311 00 13678888765432 122232 2333 4667
Q ss_pred ecChHHHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 102 ILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 102 ViDp~~si~~~~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
+.+++++++.+.||..+.+.| .+ .|||+|++..+. +.+++.+. ...++||+|+||.. |+ +|.+|.+
T Consensus 108 ~~~~~~~~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~--g~-gg~Gv~~ 174 (433)
T 2dwc_A 108 VVPNARATWIAMHRERLRETLVKE-------AKVPTSRYMYAT-TLDELYEA--CEKIGYPCHTKAIM--SS-SGKGSYF 174 (433)
T ss_dssp BSSCHHHHHHHHCHHHHHHHHHHT-------SCCCCCCEEEES-SHHHHHHH--HHHHCSSEEEEECC--C-------EE
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHh-------cCCCCCCeeEeC-CHHHHHHH--HHhcCCCEEEEECC--Cc-CCCCeEE
Confidence 789999999999999999998 65 499999999885 33222222 23478999999986 33 5789999
Q ss_pred EeChhhhhcc-----------CCCeEEEecccCCCeEEEEEEEC-----CEEEEEEeecCCCccchhhhccceeeecccc
Q 019509 181 AYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIG-----ETIKVVRRFSLPNVSKRELAKVVSVFRFPRV 244 (340)
Q Consensus 181 v~~~~~L~~l-----------~~p~v~QEfI~h~G~~~KV~ViG-----~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~ 244 (340)
+.++++|... ..++++||||+. |.++.|.++. +++....-....+. . ..+.+. ..
T Consensus 175 v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~-----~-~~~~~~--~~ 245 (433)
T 2dwc_A 175 VKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHY-----Q-IDGDYH--AS 245 (433)
T ss_dssp ECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEE-----E-SSSSEE--EE
T ss_pred ECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceE-----E-EcCEEE--EE
Confidence 9999887542 368999999974 8999998874 33211111110000 0 001110 00
Q ss_pred cccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 245 SSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
. .+..+++ ...+.++++|.++.++||+ +++++|++++.+ ++||+|||.-||-.+.
T Consensus 246 -----~-~p~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 246 -----W-QPAEISE-----KAEREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp -----E-ESCCCCH-----HHHHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred -----E-cCCCCCH-----HHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 0 0111111 0134689999999999999 778899999752 6999999999996644
No 38
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.67 E-value=3e-15 Score=145.04 Aligned_cols=224 Identities=8% Similarity=0.008 Sum_probs=150.5
Q ss_pred hHHHHHHHhCCCEEEEecCCCC--CCCCC-CccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRP--LSDQG-PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDV 122 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~--l~~q~-~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L 122 (340)
+.+..+|+++|+++ +|++.. -.-.+ .+|+|..-...- ....+....+ . + .|..+++++..++||..+-+.|
T Consensus 14 ~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v-~~~~l~~l~~-~-~-~v~p~~~a~~~~~DK~~~k~~l 87 (355)
T 3eth_A 14 RMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERW-PETALTRQLA-R-H-PAFVNRDVFPIIADRLTQKQLF 87 (355)
T ss_dssp HHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCC-CCCHHHHHHH-T-C-TTBTTTTHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCc-CHHHHHHHHh-c-C-CcCCCHHHHHHhcCHHHHHHHH
Confidence 35888999999999 666542 11111 578887655432 2233443333 3 3 7889999999999999999999
Q ss_pred HhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC--hhhhhc--cCCCeEEEe
Q 019509 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD--RFSLSE--LEPPMLLQE 198 (340)
Q Consensus 123 ~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~--~~~L~~--l~~p~v~QE 198 (340)
.++ |||+|++..+. +.+++.+. ...++||+|+||... |+ .++|+.++.+ +++|.+ ++ ++++||
T Consensus 88 ~~~-------GIptp~~~~v~-~~~e~~~~--~~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe 154 (355)
T 3eth_A 88 DKL-------HLPTAPWQLLA-ERSEWPAV--FDRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQ 154 (355)
T ss_dssp HHT-------TCCBCCEEEEC-CGGGHHHH--HHHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEE
T ss_pred HHC-------ccCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEE
Confidence 874 99999999885 33333332 235789999999852 34 5799999999 888765 23 799999
Q ss_pred cccCCCeEEEEEEECC---EEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHH
Q 019509 199 FVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARE 275 (340)
Q Consensus 199 fI~h~G~~~KV~ViG~---~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~ 275 (340)
||+ .++.+-|.++++ .+.+ .|-. +.....+.+.+.. .+..+++. ..++++++|.+
T Consensus 155 ~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~~--------~pa~l~~~-----~~~~~~~~a~~ 212 (355)
T 3eth_A 155 GIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTSV--------AFPQANAQ-----QQARAEEMLSA 212 (355)
T ss_dssp CCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEEE--------ECSSCCHH-----HHHHHHHHHHH
T ss_pred ccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEEE--------CCCCCCHH-----HHHHHHHHHHH
Confidence 997 478999999853 3332 1110 0000112221110 01112111 13568999999
Q ss_pred HHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 276 LRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 276 ~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
+.++||.. +++||++++. +++||+|||.-|+-.|.
T Consensus 213 i~~aLg~~G~~~vEf~~~~---~~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 213 IMQELGYVGVMAMECFVTP---QGLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHTCCEEEEEEEEEET---TEEEEEEEESSCCGGGT
T ss_pred HHHHCCCeeEEEEEEEEEC---CcEEEEEeeCCCCCCcc
Confidence 99999984 7889999974 26999999999986543
No 39
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.65 E-value=1.3e-15 Score=144.45 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=122.4
Q ss_pred CCccEEEEccCchhh-HHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChh
Q 019509 72 GPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (340)
Q Consensus 72 ~~~DvilhK~t~~~~-~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~ 150 (340)
.++|+++.-...... .+.+.+..+ .+|.++.+++++++.++||..+.+.|. . ||++|++.+
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~-~~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAE-KYCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHH-TTSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHH-hcCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 578988777443322 223333333 466889999999999999999999987 4 899999984
Q ss_pred hHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhccCCCeEEEecccCCCeEEEEEEECC-EEEEEEeecCCCccc
Q 019509 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSLPNVSK 229 (340)
Q Consensus 151 ~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~~p~v~QEfI~h~G~~~KV~ViG~-~v~~~~R~sl~~~~~ 229 (340)
..++||+|+||..++ +|.++.++.+ ...++++||||+ |+++.|.++++ .+....+.. .+
T Consensus 130 -----~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~--~~-- 189 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE--QI-- 189 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE--EE--
T ss_pred -----ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee--Ee--
Confidence 147899999999844 4688988888 567899999996 99999999954 333322110 00
Q ss_pred hhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHh-CC-cEeEEEEEEecCcCCeEEEEeccCC
Q 019509 230 RELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GL-RLFNIDMIREHGMRDVFYVIDINYF 307 (340)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~l-Gl-~l~GvDvi~~~~~g~~~~ViEVN~f 307 (340)
.+ .+.+.. + ..+..+++ +..++++++|.++.++| |+ +++|+|++.+ | ++|++|||.-
T Consensus 190 ---~~---~~~~~g----~--~~p~~l~~-----~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR 248 (305)
T 3df7_A 190 ---IN---NFRYAG----A--VVPARISD-----EVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINAR 248 (305)
T ss_dssp ---EE---TTEEEE----E--EESCCCCH-----HHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESS
T ss_pred ---cc---Cceecc----c--cccCCCCH-----HHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCC
Confidence 00 011100 0 01111111 11356899999999999 95 5788999984 2 5899999999
Q ss_pred CCCC
Q 019509 308 PGYG 311 (340)
Q Consensus 308 Pg~~ 311 (340)
||..
T Consensus 249 ~~~~ 252 (305)
T 3df7_A 249 LTTP 252 (305)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9974
No 40
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.63 E-value=1.5e-14 Score=136.78 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=135.3
Q ss_pred chHHHHHHHhCCCEEEEecCCCCC--------CC---CCC-c---------cEEEEccCchhhHHHHHHHHHhCCCeeec
Q 019509 45 QPKLEILARNKGISFVAIDQNRPL--------SD---QGP-F---------DVVLHKLSGMEWCKIIEDYRQKHPEVTIL 103 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l--------~~---q~~-~---------DvilhK~t~~~~~~~l~~~~~~~p~v~Vi 103 (340)
...+.++++++|+++..+|.+... .+ ..+ + |+|+.. ........+... +..+++++
T Consensus 13 ~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~-~e~~~~~~~~~l--e~~g~~~~ 89 (334)
T 2r85_A 13 ALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT-GSFVAHLGIELV--ENMKVPYF 89 (334)
T ss_dssp HHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC-TTHHHHHCHHHH--HTCCSCBB
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC-cchhhhhHHHHH--HHcCCCcc
Confidence 446899999999999999986411 01 111 2 555422 111111112222 35678888
Q ss_pred ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeC
Q 019509 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (340)
Q Consensus 104 Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~ 183 (340)
++++++..++||..+.+.|.++ |||+|++ +. +. ..++||+|+||..++ +|.++.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~Gv~~v~~ 147 (334)
T 2r85_A 90 GNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGKGYFLAKD 147 (334)
T ss_dssp SCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------TTCEEESS
T ss_pred CCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCCCEEEECC
Confidence 9999999999999999999874 8999998 32 21 126799999999744 4689999999
Q ss_pred hhhhhcc----------C--CCeEEEecccCCCeEEEEEE----ECCEEEEE---EeecCCCccchhhhc--cceeeec-
Q 019509 184 RFSLSEL----------E--PPMLLQEFVNHGGILFKIYI----IGETIKVV---RRFSLPNVSKRELAK--VVSVFRF- 241 (340)
Q Consensus 184 ~~~L~~l----------~--~p~v~QEfI~h~G~~~KV~V----iG~~v~~~---~R~sl~~~~~~~~~~--~~~~~~~- 241 (340)
.++|... . .++++||||+ |..+-+.+ +++++... .|.... .++... ....+..
T Consensus 148 ~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~ 222 (334)
T 2r85_A 148 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESN---VDAIGRIPAKDQLEFD 222 (334)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEE---GGGGGGSCHHHHTTSC
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEec---cCcccccccccccccc
Confidence 9887542 2 6899999996 77664221 23322111 111000 000000 0000000
Q ss_pred --ccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhC------CcEeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 242 --PRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLG------LRLFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 242 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lG------l~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
+.....+.. +..+++ ...+.++++|.++.++|| .+++++|++++. +| ++||+|||.-||-
T Consensus 223 ~~~~~~~~g~~--p~~l~~-----~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 223 MDITYTVIGNI--PIVLRE-----SLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp CCCCEEEEEEE--ECCCCG-----GGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEECSCCG
T ss_pred cCCceeeeCCC--CcccCH-----HHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEeCCcCC
Confidence 000000000 111111 124668999999999995 567789999974 33 6999999999986
No 41
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.62 E-value=1.2e-14 Score=144.07 Aligned_cols=226 Identities=12% Similarity=0.142 Sum_probs=144.2
Q ss_pred hHHHHHHHhCCCEEEEecCCCC-CC-------------------C------------CCCccEEEEccCc-hhhHHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRP-LS-------------------D------------QGPFDVVLHKLSG-MEWCKIIED 92 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~-l~-------------------~------------q~~~DvilhK~t~-~~~~~~l~~ 92 (340)
.+++++|+++|++++.++.+.. .. . ....|+|+.-... .+. ..+.+
T Consensus 19 ~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~-~~~~~ 97 (446)
T 3ouz_A 19 LRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSEN-QNFVE 97 (446)
T ss_dssp HHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTC-HHHHH
T ss_pred HHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCcccccC-HHHHH
Confidence 4789999999999999853210 00 0 0124555433211 011 12223
Q ss_pred HHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 93 YRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 93 ~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
..++ .|++++ .++++++.+.||..+.+.|.++ |||+|++. .+. +.+++.+. ...++||+|+||..+
T Consensus 98 ~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~--~~~~g~PvvvKp~~g 166 (446)
T 3ouz_A 98 ICAK-HNIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKL--AKEIGYPVILKAAAG 166 (446)
T ss_dssp HHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHH--HHHHCSSEEEEETTC
T ss_pred HHHH-CCCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHH--HHHhCCCEEEEECCC
Confidence 3333 467877 8899999999999999999974 99999986 443 22222222 235789999999974
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccchh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRE 231 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~-~~R~-sl~~~~~~~ 231 (340)
+ +|.+|.++.++++|.+. ..++++||||+ +++.+.|.++++. +.. ..|. +...
T Consensus 167 ~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~----- 237 (446)
T 3ouz_A 167 G---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQR----- 237 (446)
T ss_dssp C---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEE-----
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeee-----
Confidence 3 56899999999887642 56899999996 2388999888653 332 2221 1100
Q ss_pred hhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCC
Q 019509 232 LAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l-~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. ...... . .+. .+++ ...+.+.++|.++.++||+.- +++|++.+.+ | ++|++|||.-|+
T Consensus 238 -~-~~~~~~---------~-~p~~~l~~-----~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g-~~~~iEiNpR~~ 298 (446)
T 3ouz_A 238 -R-HQKLIE---------E-SPAILLDE-----KTRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L-DFYFIEMNTRLQ 298 (446)
T ss_dssp -T-TEEEEE---------E-ESCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCC
T ss_pred -c-CceEEE---------E-CCCCCCCH-----HHHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C-CEEEEEeECCCC
Confidence 0 000000 0 011 1111 113568899999999999964 5599999753 3 699999999997
Q ss_pred CC
Q 019509 310 YG 311 (340)
Q Consensus 310 ~~ 311 (340)
-.
T Consensus 299 g~ 300 (446)
T 3ouz_A 299 VE 300 (446)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 42
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.60 E-value=2e-14 Score=136.15 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=102.3
Q ss_pred CCee-ecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~-ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++ +.++++++..+.||..+.+.|.++ |||+|+++.. .++..+.+....++||+|+||..++ .|.
T Consensus 97 ~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~---~~~~~~~~~~~~~~~P~vvKp~~g~---g~~ 163 (331)
T 2pn1_A 97 IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYAT---MASFEEALAAGEVQLPVFVKPRNGS---ASI 163 (331)
T ss_dssp TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESS---HHHHHHHHHTTSSCSCEEEEESBC-------
T ss_pred CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEec---HHHhhhhhhcccCCCCEEEEeCCCC---CCC
Confidence 4664 568899999999999999999985 8999998752 1112222212468999999998744 468
Q ss_pred eeEEEeChhhhhcc---CCCeEEEecccCCCeEEEEEEEC----CEEE-EEEeecCCCccchhhhccceeeecccccccc
Q 019509 177 ELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIG----ETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (340)
Q Consensus 177 ~m~iv~~~~~L~~l---~~p~v~QEfI~h~G~~~KV~ViG----~~v~-~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~ 248 (340)
++.++.+.++|... ..++++||||+ |..+.|.+++ +++. +..+..+. . ..|....
T Consensus 164 gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~~~~------- 226 (331)
T 2pn1_A 164 EVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGETDK------- 226 (331)
T ss_dssp -------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTEEEE-------
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCceeE-------
Confidence 99999999888764 46899999996 7999988876 3443 33332211 0 0010000
Q ss_pred cccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccC-CCCC
Q 019509 249 ASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINY-FPGY 310 (340)
Q Consensus 249 ~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~-fPg~ 310 (340)
. . + +..+.+.++|.++.++||+ +++++|++.. +| +++++|||. +||.
T Consensus 227 -----~-~-~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 227 -----S-R-S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp -----E-E-E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTT
T ss_pred -----e-E-E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCc
Confidence 0 0 0 1235689999999999999 6788999953 23 799999999 5664
No 43
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.58 E-value=2.9e-14 Score=155.74 Aligned_cols=227 Identities=16% Similarity=0.222 Sum_probs=149.5
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCC-------C-----------------CCCccEEEEccCchhhHH---HHHH--HHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLS-------D-----------------QGPFDVVLHKLSGMEWCK---IIED--YRQ 95 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~-------~-----------------q~~~DvilhK~t~~~~~~---~l~~--~~~ 95 (340)
-..+.++++++|++++.+|.+.... + ...+|+|+.-........ .+.+ ..+
T Consensus 30 g~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le 109 (1073)
T 1a9x_A 30 GAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLE 109 (1073)
T ss_dssp HHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHH
Confidence 4468899999999999999754220 0 124677776554321111 1221 222
Q ss_pred hCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCc
Q 019509 96 KHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 96 ~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
+ .|+.++ .+++++..+.||..+.++|.++ |||+|++.++. +.++..+. ...++||+|+||..+.|
T Consensus 110 ~-~gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~-~~~ea~~~--~~~ig~PvVvKp~~~~G--- 175 (1073)
T 1a9x_A 110 E-FGVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAH-TMEEALAV--AADVGFPCIIRPSFTMG--- 175 (1073)
T ss_dssp H-HTCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEES-SHHHHHHH--HHHHCSSEEEEETTCCT---
T ss_pred H-cCCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEEC-CHHHHHHH--HHHcCCCEEEEECCCCC---
Confidence 2 467777 8999999999999999999984 99999999885 32222222 23578999999997554
Q ss_pred ceeeEEEeChhhhhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEE---EeecCCCccchhhhcccee
Q 019509 175 SHELFLAYDRFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVV---RRFSLPNVSKRELAKVVSV 238 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G-~~~KV~ViG~~---v~~~---~R~sl~~~~~~~~~~~~~~ 238 (340)
|.++.++.++++|.+. ..++++||||+ | +.+.|-|++|. +..+ .+.. |. .+.+..
T Consensus 176 g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~--G~~E~~v~v~~d~~g~~v~~~~~e~~d-p~----~v~~g~-- 246 (1073)
T 1a9x_A 176 GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI--GWKEYEMEVVRDKNDNCIIVCSIENFD-AM----GIHTGD-- 246 (1073)
T ss_dssp TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT--TSEEEEEEEEECTTCCEEEEEEEEESS-CT----TSCGGG--
T ss_pred CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCeEEEEEEEEeCCCCEEEEEEEeccc-CC----ccccCc--
Confidence 5789999999887653 34799999996 5 79999999753 3322 2211 10 000000
Q ss_pred eecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc--EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 239 FRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.+ ...+. .+++ ...+.++++|.++.++||+. .++||++++..+| ++||||||.-++
T Consensus 247 ----s~-----~~~Pa~~l~~-----~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 247 ----SI-----TVAPAQTLTD-----KEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp ----SC-----EEESCCSCCH-----HHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred ----EE-----EEecCCCCCH-----HHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 00 00011 1110 01246899999999999997 8899999975334 799999994443
No 44
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.57 E-value=3.4e-14 Score=155.25 Aligned_cols=226 Identities=18% Similarity=0.288 Sum_probs=139.4
Q ss_pred cchHHHHHHHhCCCEEEEecCCCCCC--CC----------------------CCccEEEEccCchhhHHHHHHHHHhCCC
Q 019509 44 LQPKLEILARNKGISFVAIDQNRPLS--DQ----------------------GPFDVVLHKLSGMEWCKIIEDYRQKHPE 99 (340)
Q Consensus 44 ~~~~l~~~a~~~gi~~~~id~~~~l~--~q----------------------~~~DvilhK~t~~~~~~~l~~~~~~~p~ 99 (340)
.+..+.++++++|++++.+|.+.... .. ...|.|+.-...... ..+.+..++ .|
T Consensus 581 ~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~-~G 658 (1073)
T 1a9x_A 581 CCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEA-AG 658 (1073)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHH-TT
T ss_pred hHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHH-CC
Confidence 34467889999999999999753221 11 123444432222211 122333333 57
Q ss_pred eeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceee
Q 019509 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (340)
Q Consensus 100 v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m 178 (340)
++++ .+++++..+.||..+.++|.++ |||+|++..+. +.+++.+. ...++||+|+||..+. +|.+|
T Consensus 659 i~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~-s~eea~~~--~~~ig~PvvVKP~~~~---gG~Gv 725 (1073)
T 1a9x_A 659 VPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVT-AIEMAVEK--AKEIGYPLVVRASYVL---GGRAM 725 (1073)
T ss_dssp CCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECC-SHHHHHHH--HHHHCSSEEEEC----------CE
T ss_pred CCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEEC-CHHHHHHH--HHHcCCCEEEEECCCC---CCCCe
Confidence 8777 8899999999999999999985 99999999875 33222222 2357999999998744 46899
Q ss_pred EEEeChhhhhcc---------CCCeEEEecccCCCe-EEEEEEECCE--EEE--EEeecCC-Cccchhhhccceeeeccc
Q 019509 179 FLAYDRFSLSEL---------EPPMLLQEFVNHGGI-LFKIYIIGET--IKV--VRRFSLP-NVSKRELAKVVSVFRFPR 243 (340)
Q Consensus 179 ~iv~~~~~L~~l---------~~p~v~QEfI~h~G~-~~KV~ViG~~--v~~--~~R~sl~-~~~~~~~~~~~~~~~~~~ 243 (340)
.+++++++|... ..++++||||+ |. .+-|-+++|. +.+ +...-.. ++..++ ....++
T Consensus 726 ~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-----~~~~~P- 797 (1073)
T 1a9x_A 726 EIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-----SACSLP- 797 (1073)
T ss_dssp EEECSHHHHHHHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG-----CCEEES-
T ss_pred EEECCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC-----ceEEec-
Confidence 999999887653 35899999996 54 7877777443 332 2222111 110000 000000
Q ss_pred ccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 244 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
...+++ ...+.++++|.+++++||+ +++++|+++++ +++||||||.-||
T Consensus 798 ---------~~~l~~-----~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~---~~~~viEvNpR~~ 847 (1073)
T 1a9x_A 798 ---------AYTLSQ-----EIQDVMRQQVQKLAFELQVRGLMNVQFAVKN---NEVYLIEVNPRAA 847 (1073)
T ss_dssp ---------CSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECS---SCEEEEEEECSCC
T ss_pred ---------CCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEEC---CeEEEEEEECCCc
Confidence 001111 0135689999999999999 78899999963 3699999999998
No 45
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.56 E-value=5.3e-14 Score=139.86 Aligned_cols=200 Identities=10% Similarity=0.076 Sum_probs=125.1
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .++++++.+.||..+.++|.++ |||+|++..+. +.++..+. ...++||+|+||..+. .|.
T Consensus 106 ~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~-~~~ea~~~--~~~~g~PvVvKp~~~~---gg~ 172 (442)
T 3lp8_A 106 EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFV-DTNSAYKF--IDKHKLPLVVKADGLA---QGK 172 (442)
T ss_dssp TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEES-SHHHHHHH--HHHSCSSEEEEESSCC---TTT
T ss_pred cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHHHH--HHHcCCcEEEeECCCC---CCC
Confidence 578887 8999999999999999999985 99999999885 33333332 2358999999998633 578
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEeecCCCccchhhhccceee
Q 019509 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKV--VRRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~--~~R~sl~~~~~~~~~~~~~~~ 239 (340)
++.++.+.+++.+. ..++++||||+ |.++.|.++ |+.+.. ..+.- .. .+
T Consensus 173 GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~-~~-----------~~ 238 (442)
T 3lp8_A 173 GTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSNPVILGVAQDY-KT-----------IG 238 (442)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSCEEEEEEEEEC-CE-----------EE
T ss_pred eEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCeEEEeEEeEee-ee-----------cc
Confidence 99999999887532 25899999996 899988888 434432 22211 10 01
Q ss_pred ecccccccccccCCCCCCCCCCCCC--ChhHHHHH----HHHHHHHhCCcE---eEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 240 RFPRVSSAAASADDADLDPGIAELP--PRPLLERL----ARELRHRLGLRL---FNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~l----A~~~~~~lGl~l---~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
++......+ ..+...|.. .++ ..+.+.+. +.++.+++|+.+ +.+|++.+.+ .++|||+|.-||-
T Consensus 239 ~~~~g~~~g---g~g~~~P~~-~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~---g~~viEiN~R~g~ 311 (442)
T 3lp8_A 239 DNNKGPNTG---GMGSYSKPN-IITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKN---EPKLLEYNVRFGD 311 (442)
T ss_dssp GGGEEEECS---CSEEEECTT-SSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETT---EEEEEEEESSCCT
T ss_pred cCCCCCCCC---CcEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCC---CeEEEEEecCCCC
Confidence 100000000 000111110 011 12234444 777778999854 4599999752 4999999999993
Q ss_pred CCcccc----HHHHHHHHHHHHHhh
Q 019509 311 GKMPDY----EHIFTDFLLSLEQSK 331 (340)
Q Consensus 311 ~g~~~~----~~~l~~~l~~~i~~~ 331 (340)
...+.. ..-|.+.+.+.+..+
T Consensus 312 ~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 312 PETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp THHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred CchhhhHHHhCCCHHHHHHHHHcCC
Confidence 221111 123455555555543
No 46
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.56 E-value=6.5e-14 Score=139.25 Aligned_cols=226 Identities=12% Similarity=0.128 Sum_probs=143.8
Q ss_pred hHHHHHHHhCCCEEEEecCCCCC-C--------------------C------------CCCccEEEEccCc-hhhHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPL-S--------------------D------------QGPFDVVLHKLSG-MEWCKIIE 91 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l-~--------------------~------------q~~~DvilhK~t~-~~~~~~l~ 91 (340)
.+++++|+++|++++.+|.+..- . . ...+|+|+.-... .+.. .+.
T Consensus 19 ~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~-~~~ 97 (461)
T 2dzd_A 19 IRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENI-QFA 97 (461)
T ss_dssp HHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCH-HHH
T ss_pred HHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCH-HHH
Confidence 36788899999999988764210 0 0 0235666543210 0111 233
Q ss_pred HHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCC
Q 019509 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (340)
Q Consensus 92 ~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~ 168 (340)
+..++ .|++++ .++++++.+.||..+.+.|.++ |||+|++. .+. +.+++.+. ...++||+|+||..
T Consensus 98 ~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~ 166 (461)
T 2dzd_A 98 KRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAF--AEAHGYPIIIKAAL 166 (461)
T ss_dssp HHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHH--HHHHCSCEEEEEST
T ss_pred HHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHH--HHhcCCcEEEEeCC
Confidence 33333 467654 7799999999999999999974 99999986 443 22222222 23478999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEeecCCCccchh
Q 019509 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRFSLPNVSKRE 231 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~-~~~R~sl~~~~~~~ 231 (340)
+. +|.+|.++.+.++|... +.++++||||+ +++.+.|.++++ ++. ...|.. +.
T Consensus 167 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~~----- 236 (461)
T 2dzd_A 167 GG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-SV----- 236 (461)
T ss_dssp TC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-EE-----
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-cc-----
Confidence 43 46899999999887542 46899999996 347888888864 243 333311 00
Q ss_pred hhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCCC
Q 019509 232 LAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
.......+.+ .+. .+++ ...+++.++|.++.+++|+.-++ +|++++. + ++||+|||.-|+
T Consensus 237 ~~~~~~~~~~----------~P~~~l~~-----~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~~ 298 (461)
T 2dzd_A 237 QRRHQKVVEV----------APSVSLSD-----ELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRIQ 298 (461)
T ss_dssp EETTEEEEEE----------ESCTTSCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSCC
T ss_pred cccccceEEE----------CCcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCCC
Confidence 0000000000 010 1111 01356889999999999998766 9999975 3 699999999987
Q ss_pred CC
Q 019509 310 YG 311 (340)
Q Consensus 310 ~~ 311 (340)
..
T Consensus 299 ~~ 300 (461)
T 2dzd_A 299 VE 300 (461)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 47
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.56 E-value=7.7e-14 Score=138.22 Aligned_cols=227 Identities=14% Similarity=0.152 Sum_probs=142.1
Q ss_pred HHHHHHHhCCCEEEEecCCCC-CC-------------------C------------CCCccEEEEccCc-hhhHHHHHHH
Q 019509 47 KLEILARNKGISFVAIDQNRP-LS-------------------D------------QGPFDVVLHKLSG-MEWCKIIEDY 93 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~-l~-------------------~------------q~~~DvilhK~t~-~~~~~~l~~~ 93 (340)
+++++|+++|++++.++.+.. .. . ...+|+|+.-... .+. ..+.+.
T Consensus 15 ~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~~~ 93 (451)
T 2vpq_A 15 RIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAEN-ADFAEL 93 (451)
T ss_dssp HHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC-HHHHHH
T ss_pred HHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccC-HHHHHH
Confidence 678889999999988864210 00 0 1345666554211 011 123333
Q ss_pred HHhCCCeeecC-hHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCC
Q 019509 94 RQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVD 170 (340)
Q Consensus 94 ~~~~p~v~ViD-p~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~ 170 (340)
.+ ..|++++. ++++++.+.||..+.+.|.++ |||+|++. .+. +.+++.+. ...++||+|+||..++
T Consensus 94 ~~-~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~--~~~~g~PvvvKp~~g~ 162 (451)
T 2vpq_A 94 CE-ACQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKI--AKKIGYPVIIKATAGG 162 (451)
T ss_dssp HH-TTTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHH--HHHHCSSEEEEETTCC
T ss_pred HH-HcCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHH--HHhcCCcEEEEECCCC
Confidence 33 46787665 699999999999999999974 99998865 443 32222222 2347899999998743
Q ss_pred CCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EeecCCCccchhhh
Q 019509 171 GSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKVV-RRFSLPNVSKRELA 233 (340)
Q Consensus 171 Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~~-~R~sl~~~~~~~~~ 233 (340)
.|.+|.++.+.++|... +.++++||||+ +++++.|.++++ ++... .|.. . +. .
T Consensus 163 ---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~----~ 232 (451)
T 2vpq_A 163 ---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDC-T-IQ----R 232 (451)
T ss_dssp ---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEE-E-EE----E
T ss_pred ---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEecccc-c-hh----c
Confidence 46899999999876542 46899999996 237888888754 34332 2211 0 00 0
Q ss_pred ccceeeecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCCcE-eEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 234 KVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl~l-~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.....+. . .+.. +++ ...+.+.++|.++.++||+.- +++|++++..+| ++||+|||.-|+-.
T Consensus 233 ~~~~~~~---------~-~P~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 233 RMQKLVE---------E-APSPILDD-----ETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTRIQVE 296 (451)
T ss_dssp TTEEEEE---------E-ESCTTCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECSCCTT
T ss_pred cccceEE---------E-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCCCCCc
Confidence 0000000 0 0111 110 013468899999999999975 459999972233 79999999998754
No 48
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=8.5e-14 Score=139.69 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=134.0
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhc
Q 019509 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADL 125 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~ 125 (340)
+.++++|++.|++ +|+. .++. ....+.+..++ -|++ -.+++++..+.||..+.++|.++
T Consensus 92 ~~I~~~a~~~~id-----------------~Vip-~sE~-~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~~ 150 (474)
T 3vmm_A 92 EQIVKVAEMFGAD-----------------AITT-NNEL-FIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNKA 150 (474)
T ss_dssp HHHHHHHHHTTCS-----------------EEEE-SCGG-GHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-----------------EEEE-CCcc-cHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHHc
Confidence 4677777777754 4444 2222 22333343333 4666 78899999999999999999974
Q ss_pred cccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc---------------
Q 019509 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL--------------- 190 (340)
Q Consensus 126 ~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l--------------- 190 (340)
|||+|++..+. +.++..+ ....++||+|+||..+. +|.+|.++.++++|.+.
T Consensus 151 -------GIpvp~~~~v~-s~ee~~~--~~~~lg~PvVVKP~~g~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 151 -------GVKSIKNKRVT-TLEDFRA--ALEEIGTPLILKPTYLA---SSIGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp -------TSCCCCEEEEC-SHHHHHH--HHHHSCSSEEEEESSCC---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred -------CCCCCCeEEEC-CHHHHHH--HHHHcCCCEEEEECCCC---cCceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 99999999885 3322222 22468999999998744 46899999999886532
Q ss_pred ----CCCeEEEecccCCC------------eEEEEEEECCEEEEE--EeecCCCccchhhhccceeeecccccccccccC
Q 019509 191 ----EPPMLLQEFVNHGG------------ILFKIYIIGETIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252 (340)
Q Consensus 191 ----~~p~v~QEfI~h~G------------~~~KV~ViG~~v~~~--~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (340)
..++++||||+..- ..+.+++.++++.++ .++. +.. .+... + ...
T Consensus 218 a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~-~~~---~~~~~-~------------~~~ 280 (474)
T 3vmm_A 218 AVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKT-PQI---GFTET-S------------HIT 280 (474)
T ss_dssp TCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEEC-CCB---TTBCC-E------------EEE
T ss_pred cccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeec-cCC---Cccce-E------------EEE
Confidence 36899999997321 234456777775432 2222 111 00000 0 000
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE--EEEEEecCcCCeEEEEeccCCCC
Q 019509 253 DADLDPGIAELPPRPLLERLARELRHRLGLRLFN--IDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G--vDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+..+++ ...+.+.++|.++.+++|+.-++ ||++.+. +| ++|+||||.-+|
T Consensus 281 Pa~l~~-----~~~~~l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 281 PSILDE-----EAKKKIVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp SCCCCH-----HHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred CCCCCH-----HHHHHHHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 111111 11346899999999999998776 9999975 34 799999997775
No 49
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.56 E-value=5.4e-14 Score=139.35 Aligned_cols=226 Identities=12% Similarity=0.132 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCEEEEecCCCC-CC------------------------------CCCCccEEEEccCc-hhhHHHHHHHH
Q 019509 47 KLEILARNKGISFVAIDQNRP-LS------------------------------DQGPFDVVLHKLSG-MEWCKIIEDYR 94 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~-l~------------------------------~q~~~DvilhK~t~-~~~~~~l~~~~ 94 (340)
+++++|+++|++++.++.+.. .. ....+|+|+.-... .+. ..+.+..
T Consensus 16 ~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~~~~ 94 (451)
T 1ulz_A 16 RIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAEN-AEFAKMC 94 (451)
T ss_dssp HHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTC-HHHHHHH
T ss_pred HHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHHHcCCCEEEECCCccccC-HHHHHHH
Confidence 578888889998888864211 00 01235666543210 111 1223333
Q ss_pred HhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCCC
Q 019509 95 QKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (340)
Q Consensus 95 ~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~G 171 (340)
++ .|++++ .++++++.+.||..+.+.|.++ |||+|++. .+. +.+++.+.+ ..++||+|+||..++
T Consensus 95 ~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~g~PvvvKp~~g~- 162 (451)
T 1ulz_A 95 EE-AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALA--REIGYPVLLKATAGG- 162 (451)
T ss_dssp HH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHH--HHHCSSEEEEECSSS-
T ss_pred HH-CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC-
Confidence 33 577765 7799999999999999999974 99999986 443 222222222 347899999998744
Q ss_pred CCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEeecCCCccchhhhc
Q 019509 172 SAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKRELAK 234 (340)
Q Consensus 172 s~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~-~~R~sl~~~~~~~~~~ 234 (340)
.|.+|.++.+.++|... +.++++||||+ +++++.|.++++ ++.. ..|.. + +. ..
T Consensus 163 --gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~----~~ 233 (451)
T 1ulz_A 163 --GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQ----RR 233 (451)
T ss_dssp --SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----ET
T ss_pred --CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-cc----cc
Confidence 46899999999887542 46899999996 248899988864 3432 22211 0 00 00
Q ss_pred cceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 235 VVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
....+. . .+. .+++ ...+.+.++|.++.++||+. ++++|++++. +| ++||+|||.-|+-.
T Consensus 234 ~~~~~~---------~-~P~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 234 NQKLVE---------I-APSLILTP-----EKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQVE 295 (451)
T ss_dssp TEEEEE---------E-ESCSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCCTT
T ss_pred ccccee---------E-CCcccCCH-----HHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCCcc
Confidence 000000 0 011 0111 01346889999999999987 4569999974 33 69999999988744
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.54 E-value=9.5e-14 Score=137.48 Aligned_cols=225 Identities=11% Similarity=0.131 Sum_probs=141.8
Q ss_pred HHHHHHHhCCCEEEEecCCC-CCC-------------------C------------CCCccEEEEccCc-hhhHHHHHHH
Q 019509 47 KLEILARNKGISFVAIDQNR-PLS-------------------D------------QGPFDVVLHKLSG-MEWCKIIEDY 93 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~-~l~-------------------~------------q~~~DvilhK~t~-~~~~~~l~~~ 93 (340)
+++++++++|++++.++.+. +.. . ...+|+|+.-... .+. ..+.+.
T Consensus 16 ~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~~~ 94 (449)
T 2w70_A 16 RILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSEN-ANFAEQ 94 (449)
T ss_dssp HHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTC-HHHHHH
T ss_pred HHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCCcccC-HHHHHH
Confidence 57888888999988885421 000 0 0235666543210 111 122333
Q ss_pred HHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCCh-hhHHHhhCCCCcEEEecCCC
Q 019509 94 RQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSI-PDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 94 ~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~-~~~l~~~~l~~PvVvKP~~a 169 (340)
.++ .|++++ .++++++.+.||..+.+.|.++ |||+|++. .+. +.+++ .+.+ ..++||+|+||..+
T Consensus 95 ~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~~g~PvvvKp~~g 163 (449)
T 2w70_A 95 VER-SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIA--KRIGYPVIIKASGG 163 (449)
T ss_dssp HHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHH--HHHCSSEEEEETTC
T ss_pred HHH-cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHH--HHhCCcEEEEECCC
Confidence 333 467755 5799999999999999999985 89999986 553 33333 2222 34789999999874
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEeecCCCccchhh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRFSLPNVSKREL 232 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~-~~R~sl~~~~~~~~ 232 (340)
+ .|.+|.++.+.++|.+. +.++++||||+ +++.+.|.++++ ++.. ..|.. . ..
T Consensus 164 ~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~~---- 233 (449)
T 2w70_A 164 G---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-MQ---- 233 (449)
T ss_dssp C---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE----
T ss_pred C---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-cc----
Confidence 4 46899999999877542 46899999996 348899888853 3433 22210 0 00
Q ss_pred hccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 233 AKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
......+. . .+. .+++ ...+.+.++|.++.++||+. ++++|++++. + ++||+|||.-|+-
T Consensus 234 ~~~~~~~~---------~-~p~~~l~~-----~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R~~~ 295 (449)
T 2w70_A 234 RRHQKVVE---------E-APAPGITP-----ELRRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTRIQV 295 (449)
T ss_dssp ETTEEEEE---------E-ESCTTCCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECSCCT
T ss_pred cCCcceee---------e-CCcccCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECCCCc
Confidence 00000000 0 011 0111 01346889999999999986 5679999975 3 6999999998874
Q ss_pred C
Q 019509 311 G 311 (340)
Q Consensus 311 ~ 311 (340)
.
T Consensus 296 ~ 296 (449)
T 2w70_A 296 E 296 (449)
T ss_dssp T
T ss_pred c
Confidence 3
No 51
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.54 E-value=4.1e-14 Score=138.84 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=114.8
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ +++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+.+ ..++||+|+||..+. .|.
T Consensus 84 ~gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~---gg~ 150 (417)
T 2ip4_A 84 RGLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFR-EPLEALAYL--EEVGVPVVVKDSGLA---AGK 150 (417)
T ss_dssp HTCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEES-SHHHHHHHH--HHHCSSEEEECTTSC---SST
T ss_pred CCCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCC
Confidence 467776 8899999999999999999974 99999999885 332232222 347899999998733 468
Q ss_pred eeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCccchhhhccceeeeccc
Q 019509 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSVFRFPR 243 (340)
Q Consensus 177 ~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG--~~v~~~--~R~sl~~~~~~~~~~~~~~~~~~~ 243 (340)
+|.++.+.++|.+. ..++++||||+ |.++.|.++. +.++.. .|...+.. +.. .+ .++
T Consensus 151 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~~~--~~-~~~-- 220 (417)
T 2ip4_A 151 GVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLL---DGD--QG-PMT-- 220 (417)
T ss_dssp TCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEE---TTT--EE-EEC--
T ss_pred CEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhc---cCC--CC-CcC--
Confidence 99999999887632 26899999996 8999998883 333332 12111000 000 00 000
Q ss_pred ccccccccCCCCCCCCCCCCCC--hhHH-HHHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 244 VSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~~~~~l---Gl---~l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
.. .+...|. .+++ .+.+ ++++.++.++| |+ +++++|++++. +| +||+|||.-||-.
T Consensus 221 g~-------~~~~~p~--~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 221 GG-------MGAVAPY--PMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp SC-------SEEEESC--CCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred CC-------CeeeeCC--CCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 00 0001111 1111 1223 55577777776 44 45679999874 33 8999999999844
No 52
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.53 E-value=1.2e-13 Score=136.91 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=139.5
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~ 123 (340)
.+.+.+.|++.+++++.+-++. .....+.+..++ .|++++ .++++++.+.||..+.++|.
T Consensus 56 ~~~l~~~a~~~~id~vv~g~e~------------------~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~ 116 (431)
T 3mjf_A 56 IAGLLAFAQSHDIGLTIVGPEA------------------PLVIGVVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLA 116 (431)
T ss_dssp HHHHHHHHHHTTEEEEEECSHH------------------HHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCEEEECCch------------------HHHHHHHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHH
Confidence 4567777877776665542111 111223333333 468777 89999999999999999999
Q ss_pred hccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc-------------
Q 019509 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------- 190 (340)
Q Consensus 124 ~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------- 190 (340)
++ |||+|++..+. +.++..+.+ ..++||+|+||..+. .|.++.++.+.+++.+.
T Consensus 117 ~~-------GIptp~~~~~~-~~~ea~~~~--~~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~ 183 (431)
T 3mjf_A 117 RH-------NIPSAEYQNFT-DVEAALAYV--RQKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDA 183 (431)
T ss_dssp HT-------TCSBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCC
T ss_pred Hc-------CCCCCCeEeeC-CHHHHHHHH--HHcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCC
Confidence 74 99999999885 333333322 347899999998533 57899999999886532
Q ss_pred CCCeEEEecccCCCeEEEEEEECC--EEEEEEeecCCCccchhhhccceeeecccccccccccCCCCCCCCCCCCCC--h
Q 019509 191 EPPMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--R 266 (340)
Q Consensus 191 ~~p~v~QEfI~h~G~~~KV~ViG~--~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~ 266 (340)
..++++||||+ |.++.|.++.| ++.... ... .. ...+++....+.+ ..+...|.. .++. .
T Consensus 184 ~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~-----~~~--~~---~~~~~~~~g~~~g---g~g~~~P~~-~l~~~~~ 247 (431)
T 3mjf_A 184 GHRIVVEEFLD--GEEASFIVMVDGENVLPMA-----TSQ--DH---KRVGDGDTGPNTG---GMGAYSPAP-VVTDDVH 247 (431)
T ss_dssp CCCEEEEECCC--SEEEEEEEEEESSCEEECC-----CBE--EC---CEEETTTEEEECS---CSEEEESCT-TSCHHHH
T ss_pred CCeEEEEEeeC--CcEEEEEEEEcCCEEEEEE-----eeE--ec---eecccCCCCCCCC---CceEEeeCC-CCCHHHH
Confidence 35899999996 89999988843 443311 000 00 0011111000000 000011110 0111 1
Q ss_pred hHHHHH----HHHHHHHhCCcEe---EEEEEEecCcCCeEEEEeccCCCCCCCcccc----HHHHHHHHHHHHHhh
Q 019509 267 PLLERL----ARELRHRLGLRLF---NIDMIREHGMRDVFYVIDINYFPGYGKMPDY----EHIFTDFLLSLEQSK 331 (340)
Q Consensus 267 ~~~~~l----A~~~~~~lGl~l~---GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~----~~~l~~~l~~~i~~~ 331 (340)
+.+.+. +.++.+++|+.+. .+|++++. +| +++|||+|.-||....+.. -.-|.+.+.+.+..+
T Consensus 248 ~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~ 321 (431)
T 3mjf_A 248 QRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGK 321 (431)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCC
Confidence 223332 4566688898654 49999975 33 5999999999994433311 123445555555443
No 53
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.52 E-value=1.2e-13 Score=135.74 Aligned_cols=180 Identities=12% Similarity=0.145 Sum_probs=118.0
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEE
Q 019509 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (340)
Q Consensus 101 ~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~i 180 (340)
++-.++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+. ...++||+|+||..+. .|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~e~~~~--~~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAE-TPEELREK--IKKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHHH--HTTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEEC-CHHHHHHH--HHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5668999999999999999999974 99999998885 33222222 2468999999998743 4689999
Q ss_pred EeChhhhhcc-----------C--CCeEEEecccCCCeEEEEEEE--CCEEEEEEeecCCCccchhhhccceeeeccccc
Q 019509 181 AYDRFSLSEL-----------E--PPMLLQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVS 245 (340)
Q Consensus 181 v~~~~~L~~l-----------~--~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~~R~sl~~~~~~~~~~~~~~~~~~~~~ 245 (340)
+.+.++|.+. . .++++||||+ |+.+.|.++ |+.+..... ..+. ...+.+....
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~--~~~~--------~~~~~~~~~~ 227 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF--VRDY--------KRLMDGDRGP 227 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC--CEEC--------CEEETTTEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee--eEee--------eeccCCCCCC
Confidence 9999877541 1 3899999996 899999888 333332210 0000 0000000000
Q ss_pred ccccccCCCCCCCCCCCCC--ChhHHHHHHHHHHHHh-----CC-cEeEEEEEEecCcCCeEEEEeccCCCCCCCc
Q 019509 246 SAAASADDADLDPGIAELP--PRPLLERLARELRHRL-----GL-RLFNIDMIREHGMRDVFYVIDINYFPGYGKM 313 (340)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~p--~~~~~~~lA~~~~~~l-----Gl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 313 (340)
..+ ..+...|. .++ ..+.++++|.++.++| +. +++++|++++. + .+||+|||.-||-.+.
T Consensus 228 ~~g---~~~~~~P~--~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 228 NTG---GMGSWGPV--EIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-G--DPYILEYNVRLGDPET 295 (412)
T ss_dssp ECS---CSEEEECC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-T--EEEEEEEESSCCTTHH
T ss_pred CCC---CceEEECC--CCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-C--CcEEEEEecCCCCCcc
Confidence 000 00011111 111 1245789999999999 44 56679999975 2 3899999999986643
No 54
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.52 E-value=6.8e-14 Score=137.42 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=115.6
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+.+ ..++||+|+||..+. .|+
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvvvKp~~g~---gg~ 151 (424)
T 2yw2_A 85 RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFT-DFEKAKEYV--EKVGAPIVVKADGLA---AGK 151 (424)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESSCC---TTC
T ss_pred CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HHcCCcEEEEeCCCC---CCC
Confidence 477777 8899999999999999999974 99999999885 332233322 347899999998743 568
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCccchhhhccceee
Q 019509 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~--~R~sl~~~~~~~~~~~~~~~ 239 (340)
+|.++.+.++|.+. ..++++||||+ |.++.|.++ |+.++.. .|.... .+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~------------~~ 217 (424)
T 2yw2_A 152 GAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYVPLPTSQDHKR------------LL 217 (424)
T ss_dssp SEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEECCE------------EE
T ss_pred CEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEEeecceeeccc------------cc
Confidence 99999999887532 25899999996 889988777 4544431 121100 01
Q ss_pred ecccccccccccCCCCCCCCCCCCCC--hhHH-HHHHHHHHHHh---CCc---EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 240 RFPRVSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---LFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~~~~~l---Gl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
++......+. .+...|.. .+++ .+.+ ++++.++.++| |++ ++++|++++. + ++||+|||.-||-
T Consensus 218 ~~~~~~~~g~---~~~~~p~~-~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~g~ 290 (424)
T 2yw2_A 218 DEDKGPNTGG---MGAYSPTP-VINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-E--GPKVLEFNVRLGD 290 (424)
T ss_dssp TTTEEEECSC---SEEEESCT-TSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-T--EEEEEEEESSCCT
T ss_pred cCCCCCCCCC---CeeECCCc-cCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CcEEEEEecCCCC
Confidence 0000000000 00011100 0111 1223 36777777776 554 4569999975 2 3899999999984
Q ss_pred CC
Q 019509 311 GK 312 (340)
Q Consensus 311 ~g 312 (340)
.+
T Consensus 291 ~~ 292 (424)
T 2yw2_A 291 PE 292 (424)
T ss_dssp TT
T ss_pred cH
Confidence 43
No 55
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.51 E-value=1.2e-13 Score=135.59 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=115.3
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+.+ ..++||+|+||.. |+ .|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~--~~-~g~ 151 (422)
T 2xcl_A 85 AGLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFT-SFDEAKAYV--QEKGAPIVIKADG--LA-AGK 151 (422)
T ss_dssp TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEESS--CG-GGT
T ss_pred CCCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCCEEEEeCC--CC-CCC
Confidence 467777 8899999999999999999974 99999999885 332333322 3478999999987 33 578
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCccchhhhccceee
Q 019509 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~--~R~sl~~~~~~~~~~~~~~~ 239 (340)
++.++.+.+++... ..++++||||+ |.++.|.++ |+.++.. .|.. ...+
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~~~~~~~~~------------~~~~ 217 (422)
T 2xcl_A 152 GVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVYPMVIAQDH------------KRAF 217 (422)
T ss_dssp CEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEEE------------EEEE
T ss_pred cEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEEecceeeee------------ehhc
Confidence 99999999877542 26899999997 899998887 4443321 1110 0000
Q ss_pred ecccccccccccCCCCCCCCCCCCCC--hhHH-HHHHHHHHHHh---CCc---EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 240 RFPRVSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---LFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~~~~~l---Gl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
++......+.. +...|. ..+++ .+.+ ++++.++.++| |++ ++++|++++. + +++|+|||.-||-
T Consensus 218 ~~~~~~~~g~~---~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~--g~~viEiN~R~g~ 290 (422)
T 2xcl_A 218 DGDKGPNTGGM---GAYSPV-PQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-N--GSKVIEFNARFGD 290 (422)
T ss_dssp GGGEEEEEEEE---EEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-T--EEEEEEEESSCCT
T ss_pred CCCCCCCCCCC---eeEccC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-C--CcEEEEEecCCCC
Confidence 00000000000 000010 00111 1223 34777777776 554 4668999975 2 3899999999995
Q ss_pred CC
Q 019509 311 GK 312 (340)
Q Consensus 311 ~g 312 (340)
.+
T Consensus 291 ~~ 292 (422)
T 2xcl_A 291 PE 292 (422)
T ss_dssp TT
T ss_pred cH
Confidence 54
No 56
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.51 E-value=1.9e-13 Score=135.73 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=112.8
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcce
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh 176 (340)
.|++++ .++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+.+ ..++||+|+||..+. .|.
T Consensus 106 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~PvVvKp~~~~---gg~ 172 (451)
T 2yrx_A 106 EGLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFT-SYEEAKAYI--EQKGAPIVIKADGLA---AGK 172 (451)
T ss_dssp TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHH--HHHCSSEEEEECC-------C
T ss_pred CCCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHH--HhcCCcEEEEeCCCC---CCC
Confidence 577777 7889999999999999999974 99999999885 332333322 347899999998743 568
Q ss_pred eeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EeecCCCccchhhhccceee
Q 019509 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYII--GETIKVV--RRFSLPNVSKRELAKVVSVF 239 (340)
Q Consensus 177 ~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~Vi--G~~v~~~--~R~sl~~~~~~~~~~~~~~~ 239 (340)
++.++.+.+++... ..++++||||+ |.++.|.++ |+.+... .|.. . ..+
T Consensus 173 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~-~-----------~~~ 238 (451)
T 2yrx_A 173 GVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDH-K-----------RAY 238 (451)
T ss_dssp CEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEEC-C-----------EEE
T ss_pred cEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEec-c-----------ccc
Confidence 99999999876531 26899999997 899998877 4433321 1110 0 001
Q ss_pred ecccccccccccCCCCCCCCCCCCCC--hhHH-HHHHHHHHHHh---CCc---EeEEEEEEecCcCCeEEEEeccCCCCC
Q 019509 240 RFPRVSSAAASADDADLDPGIAELPP--RPLL-ERLARELRHRL---GLR---LFNIDMIREHGMRDVFYVIDINYFPGY 310 (340)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~-~~lA~~~~~~l---Gl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~ 310 (340)
++......+. .+...|. ..+++ .+.+ ++++.++.++| |++ ++++|++++. + .++|+|||.-||-
T Consensus 239 ~~~~~~~~g~---~~~~~p~-~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~g~ 311 (451)
T 2yrx_A 239 DGDEGPNTGG---MGAYSPV-PQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-N--GPKVIEFNARFGD 311 (451)
T ss_dssp TTTEEEECSC---SEEEESC-TTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-T--EEEEEEEESSCCT
T ss_pred cCCCCCCCCC---CeEEccC-CCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CcEEEEEecCCCC
Confidence 0000000000 0001110 00111 1223 55677777766 554 5668999975 2 3899999999985
Q ss_pred CC
Q 019509 311 GK 312 (340)
Q Consensus 311 ~g 312 (340)
.+
T Consensus 312 ~~ 313 (451)
T 2yrx_A 312 PE 313 (451)
T ss_dssp TH
T ss_pred cH
Confidence 43
No 57
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.50 E-value=2.3e-13 Score=138.66 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=136.5
Q ss_pred EEecCCC-cccc-cchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHH
Q 019509 33 YALTSKK-KKSF-LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAI 109 (340)
Q Consensus 33 ~~~~~kK-~~~~-~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si 109 (340)
|++++.. ..+| +.+.++++|++.|++.+..-... ++. . ..+.+..++ .|++++ .+++++
T Consensus 98 ~~i~~~~~~~sy~d~~~ii~~a~~~~~daI~pg~gf--------------lsE--~-~~~a~~le~-~Gi~~iGp~~~ai 159 (540)
T 3glk_A 98 VPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGH--------------ASE--N-PKLPELLCK-NGVAFLGPPSEAM 159 (540)
T ss_dssp EECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSG--------------GGG--C-THHHHHHHH-TTCEESSCCHHHH
T ss_pred EEeCCCCcccccccHHHHHHHHHHhCCCEEEeCCCc--------------ccc--C-HHHHHHHHH-cCCceeCCCHHHH
Confidence 3444432 2344 45678999999988765421110 111 1 112233333 578888 899999
Q ss_pred HHhcCHHHHHHHHHhccccCCCCccccCcEEE--E--ec---------------------CCCChhhHH-HhhCCCCcEE
Q 019509 110 KHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--I--TK---------------------DSLSIPDQV-FEAGLKLPLV 163 (340)
Q Consensus 110 ~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~--~~---------------------~~~~~~~~l-~~~~l~~PvV 163 (340)
+.+.||..+.++|.++ |||+|++.. + .. ...+..+.. ....++||+|
T Consensus 160 ~~~~DK~~~k~ll~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvV 232 (540)
T 3glk_A 160 WALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLM 232 (540)
T ss_dssp C---CHHHHHHHHHHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEE
T ss_pred HHhCCHHHHHHHHHHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEE
Confidence 9999999999999974 999999865 0 00 011111111 1245899999
Q ss_pred EecCCCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccc
Q 019509 164 AKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSK 229 (340)
Q Consensus 164 vKP~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~-~~R~-sl~~~~~ 229 (340)
+||..++ +|.+|.++.+.++|.+. +.++++||||+ +++.+-|-|++|. +.. ..|. +...
T Consensus 233 VKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d~~G~vv~l~~rd~s~qr--- 305 (540)
T 3glk_A 233 IKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRDCSIQR--- 305 (540)
T ss_dssp EEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEECTTSCEEEEEEEEEEEC----
T ss_pred EEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeceeeeeee---
Confidence 9998744 46899999999887642 46899999995 2389999999763 332 2331 1110
Q ss_pred hhhhccceeeecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCC
Q 019509 230 RELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 307 (340)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~f 307 (340)
.+..... . .+.. +++ ...+.+.++|.++++++|.. .++||++.+. +| ++|++|||.-
T Consensus 306 -----------~~~k~ie--~-~Pa~~l~~-----~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~-dg-~~~~lEiNpR 364 (540)
T 3glk_A 306 -----------RHQKIVE--E-APATIAPL-----AIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SFHFLELNPR 364 (540)
T ss_dssp -------------CCSEE--E-ESCTTSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEECS
T ss_pred -----------cccceEE--e-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEEEECC
Confidence 0110000 0 0111 111 11356889999999999995 5569999975 34 6999999999
Q ss_pred CCCC
Q 019509 308 PGYG 311 (340)
Q Consensus 308 Pg~~ 311 (340)
|+-.
T Consensus 365 ~~~~ 368 (540)
T 3glk_A 365 LQVE 368 (540)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 9854
No 58
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.48 E-value=2.3e-13 Score=139.68 Aligned_cols=218 Identities=13% Similarity=0.094 Sum_probs=139.6
Q ss_pred ccc-cchHHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHH
Q 019509 41 KSF-LQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSM 118 (340)
Q Consensus 41 ~~~-~~~~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~ 118 (340)
.+| +.+.++++|++.|++.+..--.. +.+ . ..+.+..+ ..|++++ .++++++.+.||..+
T Consensus 123 ~syld~~~Il~~a~~~~vdaV~pG~Gf-lsE---------------n-~~~a~~le-~~Gi~~iGp~~~ai~~~~DK~~a 184 (587)
T 3jrx_A 123 NNYANVELIVDIAKRIPVQAVWAGWGH-ASE---------------N-PKLPELLC-KNGVAFLGPPSEAMWALGDKIAS 184 (587)
T ss_dssp GTTTCHHHHHHHHHHTTCSEEECCSST-TTT---------------C-THHHHHHH-TTTCEESSCCHHHHHHHCSHHHH
T ss_pred ccccCHHHHHHHHHHhCCCEEEeCCCc-ccc---------------C-HHHHHHHH-HCCCCeeCCCHHHHHHhCCHHHH
Confidence 344 45678999999888765421110 111 1 11223333 3678888 899999999999999
Q ss_pred HHHHHhccccCCCCccccCcEEE--E--ec---------------------CCCChhhHH-HhhCCCCcEEEecCCCCCC
Q 019509 119 LQDVADLNLSDCNGKVRVPRQMV--I--TK---------------------DSLSIPDQV-FEAGLKLPLVAKPLVVDGS 172 (340)
Q Consensus 119 ~~~L~~~~~~~~~~~I~~P~~~~--~--~~---------------------~~~~~~~~l-~~~~l~~PvVvKP~~a~Gs 172 (340)
.+++.++ |||+|++.. + .. ...+..+.. ....++||+|+||..++
T Consensus 185 k~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~Gg-- 255 (587)
T 3jrx_A 185 TVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGG-- 255 (587)
T ss_dssp HHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCC--
T ss_pred HHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCC--
Confidence 9999874 999999764 0 00 011111111 12458999999998744
Q ss_pred CcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEee-cCCCccchhhhcccee
Q 019509 173 AKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVSV 238 (340)
Q Consensus 173 ~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~~---v~-~~~R~-sl~~~~~~~~~~~~~~ 238 (340)
+|.+|.++.++++|.+. +.++++||||+ +++.+-|-|++|. ++ ...|. +..
T Consensus 256 -GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~D~~G~vv~l~~rd~siq------------- 320 (587)
T 3jrx_A 256 -GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILADQYGNAVSLFGRDCSIQ------------- 320 (587)
T ss_dssp -SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECSSSCEEEEEEEEEEEE-------------
T ss_pred -CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeeecccc-------------
Confidence 46899999999887642 46899999996 2499999999864 33 22331 110
Q ss_pred eecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 239 FRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
+.+.... .. .+.. +++ ...+.+.++|.++++++|.. .++||++.+. +| ++|++|||.-|+..
T Consensus 321 -rr~qk~i--e~-aPa~~l~~-----~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~-dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 321 -RRHQKIV--EE-APATIAPL-----AIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ-DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp -SSSCEEE--EE-ESCCSSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEECS-SS-CEEEEEEESSCCTT
T ss_pred -cccccee--Ee-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceeEEEEEEeC-CC-CEEEEEEeCCCCCc
Confidence 0010000 00 0111 111 11356889999999999995 5569999974 33 69999999999854
No 59
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.47 E-value=4.3e-13 Score=133.10 Aligned_cols=181 Identities=9% Similarity=0.072 Sum_probs=114.4
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCc-EEEecCCCCCCCcc
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKS 175 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-vVvKP~~a~Gs~~s 175 (340)
.|++++ .++++++.+.||..+.+.|.++ |||+|++..+. +.+++.+. ...++|| +|+||..+. .|
T Consensus 111 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvvKp~~~~---gg 177 (452)
T 2qk4_A 111 AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFT-KPEEACSF--ILSADFPALVVKASGLA---AG 177 (452)
T ss_dssp TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEES-SHHHHHHH--HHHCSSCEEEEEESBC------
T ss_pred cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHH--HHhCCCCeEEEEeCCCC---CC
Confidence 478777 8899999999999999999974 99999999885 33223222 2358999 999998743 46
Q ss_pred eeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EeecCCCccchhhhcccee
Q 019509 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRFSLPNVSKRELAKVVSV 238 (340)
Q Consensus 176 h~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG--~~v~~~--~R~sl~~~~~~~~~~~~~~ 238 (340)
.+|.++.+.++|.+. ..++++||||+ |.++.|.+++ +.+..+ .|..- ..
T Consensus 178 ~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~------------~~ 243 (452)
T 2qk4_A 178 KGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHK------------RL 243 (452)
T ss_dssp CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEE------------EE
T ss_pred CCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeecc------------cc
Confidence 899999999887541 25899999996 8999998884 323321 11100 00
Q ss_pred eecccccccccccCCCCCCCCCCCCCC--hhHHH-HHHHHHHHHh---CC---cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 239 FRFPRVSSAAASADDADLDPGIAELPP--RPLLE-RLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~-~lA~~~~~~l---Gl---~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+++......+.. +...|. ..+++ .+.+. +++.++.++| |+ +++++|++++. + ++||+|||.-||
T Consensus 244 ~~~~~~~~~g~~---~~~~P~-~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~--g~~viEiN~R~~ 316 (452)
T 2qk4_A 244 LEGDGGPNTGGM---GAYCPA-PQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-N--GPKVLEFNCRFG 316 (452)
T ss_dssp ETTTEEEEEEEE---EEEESC-TTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-T--EEEEEEEESSCC
T ss_pred cCCCCCCCCCCc---eeeccC-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-C--CcEEEEEeccCC
Confidence 000000000000 000110 00111 22343 6788888776 43 46789999975 2 389999999999
Q ss_pred CCC
Q 019509 310 YGK 312 (340)
Q Consensus 310 ~~g 312 (340)
-.+
T Consensus 317 ~~~ 319 (452)
T 2qk4_A 317 DPE 319 (452)
T ss_dssp TTT
T ss_pred CcH
Confidence 543
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.47 E-value=1.2e-13 Score=144.10 Aligned_cols=227 Identities=13% Similarity=0.131 Sum_probs=141.0
Q ss_pred chHHHHHHHhCCCEEEEecCCCCCC--------------------C------------CCCccEEEEccCc-hhhHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRPLS--------------------D------------QGPFDVVLHKLSG-MEWCKIIE 91 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~l~--------------------~------------q~~~DvilhK~t~-~~~~~~l~ 91 (340)
-.+++++|+++|++++.++.+..-. . ....|+|+.-... .+.. .+.
T Consensus 40 a~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~-~~a 118 (675)
T 3u9t_A 40 ACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENA-DFA 118 (675)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCH-HHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCH-HHH
Confidence 3478999999999999996431000 0 0134555543211 1121 222
Q ss_pred HHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 92 ~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
+..+ ..|++++ .++++++.+.||..+.++|.++ |||+|++... -.+.+++.+. ...++||+|+||..+
T Consensus 119 ~~le-~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~--a~~igyPvvvKp~~G 188 (675)
T 3u9t_A 119 RACE-EAGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRRE--AGRIGYPVLLKAAAG 188 (675)
T ss_dssp HHHH-TTTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHH--HHHSCSSBCCBCCC-
T ss_pred HHHH-HcCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHH--HHhCCCcEEEEECCC
Confidence 3333 3567776 7899999999999999999974 9999998752 1133333332 245899999999874
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEE-EEEee-cCCCccchh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGE---TIK-VVRRF-SLPNVSKRE 231 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~---~v~-~~~R~-sl~~~~~~~ 231 (340)
+ +|.+|.++.++++|.+. +.++++||||+. .+.+-|-|++| ++. ...|. |...
T Consensus 189 ~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr----- 259 (675)
T 3u9t_A 189 G---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQR----- 259 (675)
T ss_dssp --------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBS-----
T ss_pred C---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceee-----
Confidence 4 46899999999887642 357999999972 37788877765 333 33442 2110
Q ss_pred hhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 232 LAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
. +... ...+ +. .+++ ...+.+.++|.++++++|+ +.++||++.+. +| ++|++|||.-|+
T Consensus 260 -~--------~qk~--ie~~-Pa~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~~ 320 (675)
T 3u9t_A 260 -R--------HQKV--VEEA-PAPGLGA-----ELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRLQ 320 (675)
T ss_dssp -S--------SSBC--EEEE-SCSSCCH-----HHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSCC
T ss_pred -c--------cceE--EEEC-CCCCCCH-----HHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEecccccc
Confidence 0 0000 0000 00 0111 1135688999999999999 56779999875 33 699999999997
Q ss_pred C
Q 019509 310 Y 310 (340)
Q Consensus 310 ~ 310 (340)
-
T Consensus 321 ~ 321 (675)
T 3u9t_A 321 V 321 (675)
T ss_dssp T
T ss_pred C
Confidence 4
No 61
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.46 E-value=1.2e-13 Score=144.28 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCCCCCc
Q 019509 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (340)
Q Consensus 98 p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~ 174 (340)
.|++++ .++++++.+.||..+.++|.+ .|||+|++. .+. +.+++.+. ...++||+|+||..++ +
T Consensus 98 ~Gi~~iGp~~~ai~~~~dK~~~k~~l~~-------~GVPvpp~~~~~~~-s~~e~~~~--a~~igyPvVvKp~~gg---g 164 (681)
T 3n6r_A 98 EGVIFVGPPKGAIEAMGDKITSKKIAQE-------ANVSTVPGYMGLIE-DADEAVKI--SNQIGYPVMIKASAGG---G 164 (681)
T ss_dssp TTCCCSSSCHHHHHHTTSHHHHHHHHHT-------TTCCCCCC-------------------------------------
T ss_pred cCCceECCCHHHHHHhCCHHHHHHHHHH-------cCcCcCCccccCcC-CHHHHHHH--HHhcCCcEEEEECCCC---C
Confidence 478887 889999999999999999987 499999975 343 33333332 2468999999998743 4
Q ss_pred ceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCccchhhhccc
Q 019509 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKRELAKVV 236 (340)
Q Consensus 175 sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v-~~~~R~-sl~~~~~~~~~~~~ 236 (340)
|.+|.++.++++|... +.++++||||+. ++.+.|.|++|. + ....|. |... . ..
T Consensus 165 gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr------~-~~ 236 (681)
T 3n6r_A 165 GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR------R-NQ 236 (681)
T ss_dssp --------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE------T-TE
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec------c-Cc
Confidence 6899999999887653 247999999962 389999999764 2 233332 2110 0 00
Q ss_pred eeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCCCC
Q 019509 237 SVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGYG 311 (340)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 311 (340)
..+. . .+. .+++ ...+.+.++|.++++++|+. .+.||++.+. +| ++|++|+|.-|+-.
T Consensus 237 k~~e---------~-~Pa~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 237 KVVE---------E-APSPFLDE-----ATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTRLQVE 296 (681)
T ss_dssp ECEE---------E-ESCSSCCH-----HHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECSCCTT
T ss_pred cEEE---------e-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccccCCC
Confidence 0000 0 011 0111 01346889999999999996 4459999975 33 68999999999744
No 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.46 E-value=1.1e-12 Score=143.80 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=140.5
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCC---------------------C------------CCCccEEEEccCc-hhhHHHHH
Q 019509 46 PKLEILARNKGISFVAIDQNRPLS---------------------D------------QGPFDVVLHKLSG-MEWCKIIE 91 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~---------------------~------------q~~~DvilhK~t~-~~~~~~l~ 91 (340)
.+++++|+++|+.++.++.+..-. . ....|+|+.-... .+. ..+.
T Consensus 17 ~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~-~~~a 95 (1150)
T 3hbl_A 17 IRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN-EQFA 95 (1150)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTC-HHHH
T ss_pred HHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccc-HHHH
Confidence 368999999999999987532110 0 0124555543221 111 1233
Q ss_pred HHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCC
Q 019509 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLV 168 (340)
Q Consensus 92 ~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~ 168 (340)
+..++ .|++++ .++++++.+.||..+.+++.++ |||+|++. .+. +.++..+. ...++||+|+||..
T Consensus 96 ~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~--a~~iGyPvVVKP~~ 164 (1150)
T 3hbl_A 96 RRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEF--AEEAGFPLMIKATS 164 (1150)
T ss_dssp HHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTT--GGGTCSSEEEECCC
T ss_pred HHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHH--HHHcCCCEEEEeCC
Confidence 33333 477777 8899999999999999999974 99999998 453 33333332 24689999999987
Q ss_pred CCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---E-EEEEee-cCCCccch
Q 019509 169 VDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---I-KVVRRF-SLPNVSKR 230 (340)
Q Consensus 169 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v-~~~~R~-sl~~~~~~ 230 (340)
++ +|++|.++.++++|... +.++++||||+ +.+.+-|-++++. + ....|. +...
T Consensus 165 Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr---- 236 (1150)
T 3hbl_A 165 GG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR---- 236 (1150)
T ss_dssp ----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES----
T ss_pred CC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec----
Confidence 44 46899999999886532 35799999996 2388888888763 2 233332 1100
Q ss_pred hhhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEeE-EEEEEecCcCCeEEEEeccCCC
Q 019509 231 ELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~G-vDvi~~~~~g~~~~ViEVN~fP 308 (340)
. ...... . .+. .+++ ...+.+.++|.++++++|+.-+| +|++.+.+ ++|+||||.-|
T Consensus 237 --~-~~k~~e---------~-~Pa~~l~~-----~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR~ 295 (1150)
T 3hbl_A 237 --R-HQKVVE---------V-APSVGLSP-----TLRQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPRV 295 (1150)
T ss_dssp --S-SCEEEE---------E-SSCSSCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECSC
T ss_pred --c-CceeEE---------e-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCCC
Confidence 0 000000 0 011 1111 11346899999999999987655 99999753 69999999999
Q ss_pred CCC
Q 019509 309 GYG 311 (340)
Q Consensus 309 g~~ 311 (340)
+-.
T Consensus 296 ~g~ 298 (1150)
T 3hbl_A 296 QVE 298 (1150)
T ss_dssp CTT
T ss_pred CCC
Confidence 743
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.42 E-value=1.6e-12 Score=142.76 Aligned_cols=228 Identities=16% Similarity=0.140 Sum_probs=108.2
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCC-------C--------------------------------CCCccEEEEccCc-hh
Q 019509 46 PKLEILARNKGISFVAIDQNRPLS-------D--------------------------------QGPFDVVLHKLSG-ME 85 (340)
Q Consensus 46 ~~l~~~a~~~gi~~~~id~~~~l~-------~--------------------------------q~~~DvilhK~t~-~~ 85 (340)
.+++++|+++|+.++.+|.+..-. + ...+|+|+.-..- .+
T Consensus 27 ~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE 106 (1165)
T 2qf7_A 27 IRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSE 106 (1165)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTT
T ss_pred HHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhc
Confidence 368889999999999998743210 0 0124555442210 01
Q ss_pred hHHHHHHHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcE
Q 019509 86 WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPL 162 (340)
Q Consensus 86 ~~~~l~~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~Pv 162 (340)
. ..+.+..++ .|++++ .++++++.+.||..+.+++.++ |||+|++. .+. +.+++.+. ...++||+
T Consensus 107 ~-~~~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~--a~~igyPv 174 (1165)
T 2qf7_A 107 S-PEFVDACNK-AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKM--AAAIGYPV 174 (1165)
T ss_dssp C-HHHHHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC---------------------------
T ss_pred C-HHHHHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHH--HHhcCCCE
Confidence 1 122333333 567765 6799999999999999999974 99999998 453 33333332 24589999
Q ss_pred EEecCCCCCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEeecCC
Q 019509 163 VAKPLVVDGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRFSLP 225 (340)
Q Consensus 163 VvKP~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~-~~R~sl~ 225 (340)
|+||..++ +|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. +.. ..|..
T Consensus 175 VVKp~~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~-- 248 (1165)
T 2qf7_A 175 MLKASWGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDC-- 248 (1165)
T ss_dssp ------------------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEE--
T ss_pred EEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecc--
Confidence 99998744 46899999999887642 25799999997 4789999998763 332 23310
Q ss_pred CccchhhhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCcEe-EEEEEEecCcCCeEEEEe
Q 019509 226 NVSKRELAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVID 303 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~l~-GvDvi~~~~~g~~~~ViE 303 (340)
.+. +....... . .+. .+++ ...+.+.++|.++.+++|+.-+ ++|++++..+| ++|+||
T Consensus 249 s~~----r~~~~~~e---------~-~Pa~~l~~-----~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iE 308 (1165)
T 2qf7_A 249 SVQ----RRNQKVVE---------R-APAPYLSE-----AQRQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIE 308 (1165)
T ss_dssp EEE----ETTEEEEE---------E-ESCTTCCH-----HHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEE
T ss_pred cce----ecccceEE---------e-cccccCCH-----HHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEE
Confidence 000 00000000 0 011 1111 0134688999999999999754 59999982234 799999
Q ss_pred ccCCCCCC
Q 019509 304 INYFPGYG 311 (340)
Q Consensus 304 VN~fPg~~ 311 (340)
||.-+|..
T Consensus 309 iNpR~~~~ 316 (1165)
T 2qf7_A 309 VNPRIQVE 316 (1165)
T ss_dssp EECSCCTT
T ss_pred EEcCCCCC
Confidence 99999854
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.41 E-value=1.6e-12 Score=143.07 Aligned_cols=227 Identities=17% Similarity=0.188 Sum_probs=106.4
Q ss_pred chHHHHHHHhCCCEEEEecCCCC--------------C---------C---------CCCCccEEEEccCch-hhHHHHH
Q 019509 45 QPKLEILARNKGISFVAIDQNRP--------------L---------S---------DQGPFDVVLHKLSGM-EWCKIIE 91 (340)
Q Consensus 45 ~~~l~~~a~~~gi~~~~id~~~~--------------l---------~---------~q~~~DvilhK~t~~-~~~~~l~ 91 (340)
..+++++|+++|++++.++.+.. + . .....|+|+.-.... +. ..+.
T Consensus 43 a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn-~~~a 121 (1236)
T 3va7_A 43 AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSEN-ADFS 121 (1236)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGC-HHHH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCcccccc-HHHH
Confidence 34789999999999999854321 0 0 012356666543211 11 1233
Q ss_pred HHHHhCCCeeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcE-EEEecCCCChhhHHHhhCCCCcEEEecCCC
Q 019509 92 DYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQ-MVITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (340)
Q Consensus 92 ~~~~~~p~v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~-~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a 169 (340)
+..+ ..|++++ .++++++.+.||..+.++|.++ |||+|++ .++. +.++..+. ...++||+|+||..+
T Consensus 122 ~~le-~~Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~~--a~~iGyPvVVKP~~G 190 (1236)
T 3va7_A 122 DRCS-QENIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKEV--AKKLEYPVMVKSTAG 190 (1236)
T ss_dssp HHHH-TTTCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC--------------------------------
T ss_pred HHHH-HCCCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHHH--HHHcCCCEEEEeCCC
Confidence 3333 3578776 8899999999999999999974 9999884 4443 33333332 346899999999863
Q ss_pred CCCCcceeeEEEeChhhhhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEee-cCCCccchh
Q 019509 170 DGSAKSHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRE 231 (340)
Q Consensus 170 ~Gs~~sh~m~iv~~~~~L~~l-------------~~p~v~QEfI~h~G~~~KV~ViG~~---v~~-~~R~-sl~~~~~~~ 231 (340)
+ +|.+|.++.++++|.+. +.++++||||+ +++.+.|.+++|. +.. ..|. +..
T Consensus 191 g---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q------ 260 (1236)
T 3va7_A 191 G---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ------ 260 (1236)
T ss_dssp ----------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEE------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee------
Confidence 3 46899999999887642 24699999996 2489999888763 332 2221 110
Q ss_pred hhccceeeecccccccccccCCC-CCCCCCCCCCChhHHHHHHHHHHHHhCCc-EeEEEEEEecCcCCeEEEEeccCCCC
Q 019509 232 LAKVVSVFRFPRVSSAAASADDA-DLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~lA~~~~~~lGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 309 (340)
+.+... ... .+. .+++ ...+.+.++|.++++++|.. .++||++.+..++ ++|+||||.-++
T Consensus 261 --------r~~~k~--~e~-~Pa~~l~~-----~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~ 323 (1236)
T 3va7_A 261 --------RRNQKV--IEE-TPAPNLPE-----ATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQ 323 (1236)
T ss_dssp --------ETTEEE--EEE-ESCSSCCH-----HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred --------ecCcce--EEE-cCCCCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCC
Confidence 000000 000 011 1111 01346889999999999995 6679999985333 799999999886
Q ss_pred C
Q 019509 310 Y 310 (340)
Q Consensus 310 ~ 310 (340)
-
T Consensus 324 g 324 (1236)
T 3va7_A 324 V 324 (1236)
T ss_dssp T
T ss_pred C
Confidence 3
No 65
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.37 E-value=7.4e-12 Score=127.71 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=116.1
Q ss_pred eeec-ChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-----ecC-----------------CCChhhHH-Hh
Q 019509 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-----TKD-----------------SLSIPDQV-FE 155 (340)
Q Consensus 100 v~Vi-Dp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-----~~~-----------------~~~~~~~l-~~ 155 (340)
+.++ .++++++.+.||..+.+++.++ |||+|++..+ ..+ ..+..+.. ..
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 5444 5678999999999999999974 9999997643 000 01212211 12
Q ss_pred hCCCCcEEEecCCCCCCCcceeeEEEeChhhhhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEee
Q 019509 156 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGE---TIKV-VRRF 222 (340)
Q Consensus 156 ~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~v~QEfI~h~G~~~KV~ViG~---~v~~-~~R~ 222 (340)
..++||+|+||..+. +|.+|.++.++++|... ..++++||||+ +|+.+.|.++++ ++.. ..|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 357899999998744 46899999999887642 46899999997 468899988865 3332 2221
Q ss_pred -cCCCccchhhhccceeeecccccccccccCCCC-CCCCCCCCCChhHHHHHHHHHHHHhCC-cEeEEEEEEecCcCCeE
Q 019509 223 -SLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPGIAELPPRPLLERLARELRHRLGL-RLFNIDMIREHGMRDVF 299 (340)
Q Consensus 223 -sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~lA~~~~~~lGl-~l~GvDvi~~~~~g~~~ 299 (340)
+..+. ....... .+.. +++ ...+.+.++|.++.++||+ +++++|++++..+| ++
T Consensus 307 ~~~~~~-------~~k~~~~----------~P~~~l~~-----~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~ 363 (554)
T 1w96_A 307 CSVQRR-------HQKIIEE----------APVTIAKA-----ETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KF 363 (554)
T ss_dssp EEEEET-------TEEEEEE----------ESCCSSCH-----HHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CE
T ss_pred eeeEee-------ccceeee----------CCCcCCCH-----HHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CE
Confidence 11000 0000000 0010 110 1135688999999999999 66679999962233 69
Q ss_pred EEEeccCCCCCC
Q 019509 300 YVIDINYFPGYG 311 (340)
Q Consensus 300 ~ViEVN~fPg~~ 311 (340)
||+|||.-+|-.
T Consensus 364 ~~iEiN~R~~g~ 375 (554)
T 1w96_A 364 YFLELNPRLQVE 375 (554)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEeeCCCCcc
Confidence 999999988644
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.11 E-value=8.6e-10 Score=105.28 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=117.5
Q ss_pred HHHHHHHhCCCEEEEecCCCCCC--------C---CCC-c-cEEEEccCc-----hhhHHH--HHHHHHhCCCeeecChH
Q 019509 47 KLEILARNKGISFVAIDQNRPLS--------D---QGP-F-DVVLHKLSG-----MEWCKI--IEDYRQKHPEVTILDPP 106 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~--------~---q~~-~-DvilhK~t~-----~~~~~~--l~~~~~~~p~v~ViDp~ 106 (340)
-+..+|+++|+.+..+|.+..-. + ... + | +-+..+ ..+... +.. + +..++++.-+.
T Consensus 15 ~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d--l~~~~dvitpe~e~v~~~~l~~-l-e~~~~p~~p~~ 90 (320)
T 2pbz_A 15 QILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS--ILNDDGIVVPHGSFVAYLGIEA-I-EKAKARFFGNR 90 (320)
T ss_dssp HHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC--TTCCSSBCCCBTTHHHHSCHHH-H-HTCCSCCBSCS
T ss_pred HHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH--HHhcCCEEEecccchhHHHHHH-H-HHcCCCcCCCH
Confidence 47889999999999999874211 1 111 2 2 111111 111111 111 1 35678898999
Q ss_pred HHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhh
Q 019509 107 DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (340)
Q Consensus 107 ~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~ 186 (340)
+++....||...-+.|.++ |||+|++.. .+++ .++||+|+||.. |+ +|+|+.++.+ ++
T Consensus 91 ~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~--g~-ggkG~~~v~~-ee 148 (320)
T 2pbz_A 91 RFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEG--PR-GGSGHFIVEG-SE 148 (320)
T ss_dssp SGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EE
T ss_pred HHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECC--CC-CCCCEEEECh-HH
Confidence 9999999998777888875 999999872 2221 479999999987 44 6899999999 98
Q ss_pred hhcc----CCCeEEEecccCCCeEEEE--E--EECCEEEE-EEeecCCCccchhhhccceeeecccc----cccccccCC
Q 019509 187 LSEL----EPPMLLQEFVNHGGILFKI--Y--IIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRV----SSAAASADD 253 (340)
Q Consensus 187 L~~l----~~p~v~QEfI~h~G~~~KV--~--ViG~~v~~-~~R~sl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 253 (340)
|... ..++++||||+ |..+.+ | ++-+++.+ ..+.-+.+. ++.+..+.+ +-.+.. +
T Consensus 149 l~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~~--------~g~~~~p~~~~~~~~~G~~--P 216 (320)
T 2pbz_A 149 LEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLIA--------DGNARWPVKPLPYTIVGNR--A 216 (320)
T ss_dssp CSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEETT--------CSSSSSCCSCCCCCEEEEE--E
T ss_pred HHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEEE--------CCeeecccCCCceeeecCC--C
Confidence 8754 25799999997 554431 1 12223221 111111110 111111000 000000 1
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHh------C-CcEeEEEEEEecCcCCeEEEEeccCC-CC
Q 019509 254 ADLDPGIAELPPRPLLERLARELRHRL------G-LRLFNIDMIREHGMRDVFYVIDINYF-PG 309 (340)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~lA~~~~~~l------G-l~l~GvDvi~~~~~g~~~~ViEVN~f-Pg 309 (340)
..+++ ...+++.++|.++.++| | .+.+++| + .. ++ +++|+|||.= +|
T Consensus 217 ~~~~~-----~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 217 IALRE-----SLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp CEECG-----GGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred CccCH-----HHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 11111 12356889999999998 3 5677899 5 32 23 6899999995 44
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.01 E-value=8.1e-09 Score=100.08 Aligned_cols=238 Identities=12% Similarity=0.134 Sum_probs=132.2
Q ss_pred EEEEEEecCCCcccccchHHHHHHHhCCCEEEEecCCCCCC---CCCCccEEE-Ec-cCc---hh---------------
Q 019509 29 LVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLS---DQGPFDVVL-HK-LSG---ME--------------- 85 (340)
Q Consensus 29 ~~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~---~q~~~Dvil-hK-~t~---~~--------------- 85 (340)
.+||...+-. ..-+..+|+++|+++..+|.+..-. .....|-++ .- ..+ ..
T Consensus 19 ~~I~ilGs~l------~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe 92 (361)
T 2r7k_A 19 ITIATLGSHT------SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPH 92 (361)
T ss_dssp CEEEEESSTT------HHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCB
T ss_pred CEEEEECcHH------HHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeC
Confidence 4577666542 2248889999999999999874321 111223222 11 112 10
Q ss_pred --hHH--HHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCc
Q 019509 86 --WCK--IIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP 161 (340)
Q Consensus 86 --~~~--~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P 161 (340)
+.. .+... .+..++++.-+..+++...||...-+.|.+ +|||||++ +. +. ..++||
T Consensus 93 ~~~v~~~gl~~l-~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~-------~GIptp~~--~~-~~---------~e~~~P 152 (361)
T 2r7k_A 93 GSFIAYCGLDNV-ENSFLVPMFGNRRILRWESERSLEGKLLRE-------AGLRVPKK--YE-SP---------EDIDGT 152 (361)
T ss_dssp HHHHHHHCHHHH-HHTCCSCBBSCGGGGGTTTCHHHHHHHHHH-------TTCCCCCE--ES-SG---------GGCCSC
T ss_pred chhhhHHHHHHH-HHHcCCCcCCCHHHHHHhhhHHHHHHHHHH-------cCcCCCCE--eC-CH---------HHcCCC
Confidence 111 11121 224567777777778888898877788877 49999986 32 21 123689
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhcc------------C--CCeEEEecccCCCeEEEE---E-EECCEEE--EEEe
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSEL------------E--PPMLLQEFVNHGGILFKI---Y-IIGETIK--VVRR 221 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l------------~--~p~v~QEfI~h~G~~~KV---~-ViG~~v~--~~~R 221 (340)
+|+||.. |+ .++|+.++.+.+++.+. . .++++||||+ |..+-+ | ++++++. .+.+
T Consensus 153 vVVK~~~--~a-~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~ 227 (361)
T 2r7k_A 153 VIVKFPG--AR-GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDK 227 (361)
T ss_dssp EEEECSC--CC-C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEeeCC--CC-CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecc
Confidence 9999875 33 68999999999886542 1 4699999996 766541 1 1345422 2222
Q ss_pred ecCCC------ccchhhhccceeeecccccccccccCCCCCCCCCCCCCChhHHHHHHHHHHHHh-------CCcEeEEE
Q 019509 222 FSLPN------VSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-------GLRLFNID 288 (340)
Q Consensus 222 ~sl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~lA~~~~~~l-------Gl~l~GvD 288 (340)
+-.-+ +...+-... +.. +...-.+.. +..+++ ...+++.++|.++.++| ..+.++++
T Consensus 228 r~~~~~dgi~~~~~~~~~~~-~~~--p~~v~~G~~--Pa~l~~-----~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE 297 (361)
T 2r7k_A 228 RYESNIDGLVRIPAKDQLEM-NIN--PSYVITGNI--PVVIRE-----SLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQ 297 (361)
T ss_dssp EEEEEHHHHTTSCHHHHHTC-CCC--CCEEEEEEE--ECCCCG-----GGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred eEEeecccceecchhhhhcc-cCC--CceEEecCc--CCcCCH-----HHHHHHHHHHHHHHHHHHhhccCCccceEEEE
Confidence 20000 000000000 000 000000000 111211 12466899999999998 36777899
Q ss_pred EEEecCcCCeEEEEeccCCCC
Q 019509 289 MIREHGMRDVFYVIDINYFPG 309 (340)
Q Consensus 289 vi~~~~~g~~~~ViEVN~fPg 309 (340)
++++. +| +++|+|||.=||
T Consensus 298 ~fvt~-dg-~i~V~EIapR~g 316 (361)
T 2r7k_A 298 SLCNE-NL-ELVVFEMSARVD 316 (361)
T ss_dssp EEECT-TS-CEEEEEEESSBC
T ss_pred EEEcC-CC-CEEEEEEcCCCC
Confidence 99864 23 689999999665
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.6e-12 Score=99.25 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=63.4
Q ss_pred HHhcCHHHHHHHHHhccccCCCCccccCcEE--EEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEeChhhh
Q 019509 110 KHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL 187 (340)
Q Consensus 110 ~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~L 187 (340)
..++||..+.++|.+ .|||+|++. .+. +.++..+. ...++||+|+||..++ .|.++.++.+.++|
T Consensus 4 ~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~-~~~~~~~~--~~~~~~P~vvKp~~~~---~~~gv~~v~~~~el 70 (108)
T 2cqy_A 4 GSSGDKIESKLLAKK-------AEVNTIPGFDGVVK-DAEEAVRI--AREIGYPVMIKASAGG---GGKGMRIAWDDEET 70 (108)
T ss_dssp CCCCCCCCSTTCCCS-------SCCCCCSCCCSCBS-SHHHHHHH--HHHHCSSEEEEETTSC---CTTTCEEESSHHHH
T ss_pred hhhcCHHHHHHHHHH-------cCCCCCCCcccccC-CHHHHHHH--HHhcCCCEEEEECCCC---CCccEEEeCCHHHH
Confidence 457788777776664 599999987 553 22222221 2347899999999744 46799999999876
Q ss_pred hcc-------------CCCeEEEecccCCCeEEEEEEEC
Q 019509 188 SEL-------------EPPMLLQEFVNHGGILFKIYIIG 213 (340)
Q Consensus 188 ~~l-------------~~p~v~QEfI~h~G~~~KV~ViG 213 (340)
... ..++++||||+. .+++.|.|+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 71 RDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 532 367999999972 3577777766
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.48 E-value=1.5e-06 Score=84.53 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=92.0
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCC-eeecChHHHHHHhcCHHHHHHHHHhc
Q 019509 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPE-VTILDPPDAIKHLHNRQSMLQDVADL 125 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~-v~ViDp~~si~~~~dR~~~~~~L~~~ 125 (340)
...+..+++|. +..++.+ -..+|++..-....-+ +.+ ..+|+ .-.||-......+..|..+...|.+.
T Consensus 19 ~V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~-~~l----~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~ 87 (380)
T 3tig_A 19 EVAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPF-GRL----GHEPGLVQLVNYYRGADKLCRKASLVKLIKTS 87 (380)
T ss_dssp HHHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCG-GGS----SCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC
T ss_pred HHHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCH-HHh----ccCCCcceEEeecCCcccccccHHHHHHHHHh
Confidence 57788889996 3233332 3468988764322111 111 11244 35778888888999999888888762
Q ss_pred cccCCCCccccCcEEEEe-cCC--------------------CChhhHH------HhhCCCCcEEEecCCCCCCCcceee
Q 019509 126 NLSDCNGKVRVPRQMVIT-KDS--------------------LSIPDQV------FEAGLKLPLVAKPLVVDGSAKSHEL 178 (340)
Q Consensus 126 ~~~~~~~~I~~P~~~~~~-~~~--------------------~~~~~~l------~~~~l~~PvVvKP~~a~Gs~~sh~m 178 (340)
.. .....=..|+|.++. .+. ++..+.+ ...+-+.++|+||.. |+ .++|+
T Consensus 88 ~~-~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~--~s-rG~GI 163 (380)
T 3tig_A 88 PE-LTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSS--GA-KGEGI 163 (380)
T ss_dssp HH-HHTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESC--C-----CC
T ss_pred hh-cccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCc--cC-CCCCE
Confidence 10 001122578887762 110 1111111 123567899999986 54 78999
Q ss_pred EEEeChhhhhcc----CCCeEEEecccC------CCe--EEEEEEE
Q 019509 179 FLAYDRFSLSEL----EPPMLLQEFVNH------GGI--LFKIYII 212 (340)
Q Consensus 179 ~iv~~~~~L~~l----~~p~v~QEfI~h------~G~--~~KV~Vi 212 (340)
.++.+.+++.++ ..++|+|+||.. +|+ |+|+||+
T Consensus 164 ~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 164 LISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp BCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 999999887643 578999999986 464 9999998
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.36 E-value=2.2e-07 Score=84.40 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=68.2
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCC--CCCcceeeEE-EeChhhhh
Q 019509 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD--GSAKSHELFL-AYDRFSLS 188 (340)
Q Consensus 112 ~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~--Gs~~sh~m~i-v~~~~~L~ 188 (340)
.+||..+.++|.+ .|||+|++.++. +.++..+ ....++||+|+||..++ +-..+.++.+ +.+.+++.
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~-~~~ea~~--~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAK-TLDEALE--YAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEES-SHHHHHH--HHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeC-CHHHHHH--HHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 4799999999997 499999999885 3322222 22458999999998641 0014567888 79988875
Q ss_pred cc----------------CCCeEEEecccCCCeEEEEEEECCE
Q 019509 189 EL----------------EPPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 189 ~l----------------~~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
+. ...+++||||+ .|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999998 5899999988775
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.54 E-value=9.3e-05 Score=72.38 Aligned_cols=89 Identities=19% Similarity=0.073 Sum_probs=63.6
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCC-CCCCcceeeEEEeChhhhhcc----
Q 019509 116 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL---- 190 (340)
Q Consensus 116 ~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a-~Gs~~sh~m~iv~~~~~L~~l---- 190 (340)
+...++|.+ .|||+|++.++. +.++..+ ....++||+|+||... .|...+.+|.++.+.+++++.
T Consensus 6 ~~aK~lL~~-------~GIpvp~~~~~~-s~eea~~--aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~ 75 (397)
T 3ufx_B 6 YQAKEILAR-------YGVPVPPGKVAY-TPEEAKR--IAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAI 75 (397)
T ss_dssp HHHHHHHHH-------TTCCCCCEEEES-SHHHHHH--HHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCCCCCeEEEC-CHHHHHH--HHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHh
Confidence 345566776 599999999985 3333322 2235789999999762 232356799999998876542
Q ss_pred ---------CCCeEEEecccCCCeEEEEEEECCE
Q 019509 191 ---------EPPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 191 ---------~~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
...+++|||+++ |+.+-+.++.|+
T Consensus 76 ~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~ 108 (397)
T 3ufx_B 76 LGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDR 108 (397)
T ss_dssp TTCEETTEECCCEEEEECCCE-EEEEEEEEEEET
T ss_pred hhhhccCCccceEEEEEeecC-CeeEEEEEEecC
Confidence 147999999974 899999998876
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.49 E-value=0.00011 Score=71.74 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=65.5
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCCc-EEEecCCCC-CCCcceeeEEEeChhhhhcc-
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVD-GSAKSHELFLAYDRFSLSEL- 190 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-vVvKP~~a~-Gs~~sh~m~iv~~~~~L~~l- 190 (340)
+++.+-++|.+ +|||+|++.++. +.++..+ ....++|| +|+||.... |-..+.+|.++.+.+++++.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~-s~eea~~--aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~ 73 (388)
T 2nu8_B 4 HEYQAKQLFAR-------YGLPAPVGYACT-TPREAEE--AASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFA 73 (388)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEES-SHHHHHH--HHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCcCCCCeeEEC-CHHHHHH--HHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHH
Confidence 45667777876 499999999885 3322222 22358999 999997632 22256799999998776531
Q ss_pred -------------------CCCeEEEecccCCCeEEEEEEECCEE
Q 019509 191 -------------------EPPMLLQEFVNHGGILFKIYIIGETI 216 (340)
Q Consensus 191 -------------------~~p~v~QEfI~h~G~~~KV~ViG~~v 216 (340)
..++++|+|+++ |+.+-|.++.|+.
T Consensus 74 ~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 74 ENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 136999999974 7889898887763
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.28 E-value=0.00029 Score=68.80 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHhhCCCC-cEEEecCCCCCC-Ccc-------eeeEEEeCh
Q 019509 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGS-AKS-------HELFLAYDR 184 (340)
Q Consensus 114 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-PvVvKP~~a~Gs-~~s-------h~m~iv~~~ 184 (340)
+.+.+-++|.+ +|||+|++.++. +.++..+. ...++| |+|+||...+|. -.+ .+|.++.+.
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~-s~~ea~~~--a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSD-------NGVKVQRFFVAD-TANEALEA--AKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEES-SHHHHHHH--HHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHH-------CCcCCCCeEEEC-CHHHHHHH--HHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 34556677776 499999999885 33333332 235899 899999754443 111 458999998
Q ss_pred hhhhcc-----C---------------CCeEEEecccCCCeEEEEEEECCE
Q 019509 185 FSLSEL-----E---------------PPMLLQEFVNHGGILFKIYIIGET 215 (340)
Q Consensus 185 ~~L~~l-----~---------------~p~v~QEfI~h~G~~~KV~ViG~~ 215 (340)
+++++. . ..+++|||++ .|+.+-+.++.|+
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~ 123 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDR 123 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEET
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEcc
Confidence 776531 1 2489999997 4899988888776
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.20 E-value=0.0025 Score=65.61 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=105.7
Q ss_pred EEEEEecCCCcccccchHHHHHHHhCCCEEEEec-CCCCCC-C-C--------CCccEEEEccCchhhH-HHHH------
Q 019509 30 VVGYALTSKKKKSFLQPKLEILARNKGISFVAID-QNRPLS-D-Q--------GPFDVVLHKLSGMEWC-KIIE------ 91 (340)
Q Consensus 30 ~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id-~~~~l~-~-q--------~~~DvilhK~t~~~~~-~~l~------ 91 (340)
+|-.+....-.......-|.++|++.|++...++ +++ +. + . .+.|+|+ |+..-+|. ..+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~d-l~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~ 458 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDE-LGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDRE 458 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTT-CEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---C
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHh-EEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccc
Confidence 4544433332333455568999999999999998 764 32 1 1 2455654 45543332 1110
Q ss_pred ---------------HHHH--hCCCeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHH
Q 019509 92 ---------------DYRQ--KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVF 154 (340)
Q Consensus 92 ---------------~~~~--~~p~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~ 154 (340)
+|.. +..++.+|+|+.++. +.||. ++.+|.++... +. -.++|.+ +.+. . +.
T Consensus 459 ~~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKa-ilalLw~l~p~---hp-~LLpT~f---~~~~--~-l~ 526 (619)
T 2io8_A 459 FAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKA-ILPILWSLFPH---HR-YLLDTDF---TVND--E-LV 526 (619)
T ss_dssp CSSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTT-HHHHHHHHSTT---CT-TCCCEES---SCCH--H-HH
T ss_pred cccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHH-HHHHHHHhCCC---CC-CCCCeee---cCCc--c-cc
Confidence 2321 356799999999987 89994 45566654210 11 1334542 2211 1 12
Q ss_pred hhCCCCcEEEecCCCCCCCcceeeEEEeC-hhhhhcc-----CCCeEEEecccCCCeE-----EEEEEECCEEE-EEEee
Q 019509 155 EAGLKLPLVAKPLVVDGSAKSHELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGIL-----FKIYIIGETIK-VVRRF 222 (340)
Q Consensus 155 ~~~l~~PvVvKP~~a~Gs~~sh~m~iv~~-~~~L~~l-----~~p~v~QEfI~h~G~~-----~KV~ViG~~v~-~~~R~ 222 (340)
.. ..|+||+. |. ++.+|.++.. .+.+.+. +.++|+|||++-+.++ +-+|++|++.. +..|.
T Consensus 527 ~~----~yV~KPi~--gR-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~ 599 (619)
T 2io8_A 527 KT----GYAVKPIA--GR-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_dssp HH----CEEEEETT--CC-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred cC----CEEEccCC--CC-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEec
Confidence 22 49999998 54 6788999876 2222222 4679999999987665 89999999976 46776
Q ss_pred c
Q 019509 223 S 223 (340)
Q Consensus 223 s 223 (340)
+
T Consensus 600 ~ 600 (619)
T 2io8_A 600 D 600 (619)
T ss_dssp E
T ss_pred C
Confidence 5
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=92.49 E-value=1.5 Score=45.15 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=89.7
Q ss_pred EEEEEecCCCcccccchHHHHHHHhCCCEEEEec-CCCCCC--C-------C-CCccEEEEccCchhhHHHH--------
Q 019509 30 VVGYALTSKKKKSFLQPKLEILARNKGISFVAID-QNRPLS--D-------Q-GPFDVVLHKLSGMEWCKII-------- 90 (340)
Q Consensus 30 ~VG~~~~~kK~~~~~~~~l~~~a~~~gi~~~~id-~~~~l~--~-------q-~~~DvilhK~t~~~~~~~l-------- 90 (340)
+|..+....-.......-|.+.|++.|++...++ +++ |. + + .+.|+|+ |+..-+|...-
T Consensus 397 ~v~~~~~~~~ED~~t~~yL~~~a~eaG~~t~~~~~i~d-L~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~ 474 (652)
T 2vob_A 397 RVHFCVDEEREEQYTALYCMQAAEAVGLEGKLCILFDE-FRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREER 474 (652)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEETTTT-CEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHCCCcEEEecchhh-eEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhccccc
Confidence 4555533322222344458999999999999987 654 32 1 1 3667764 56654442111
Q ss_pred -----------HHHHH--hCC--CeeecChHHHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEecCCCChhhHHHh
Q 019509 91 -----------EDYRQ--KHP--EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFE 155 (340)
Q Consensus 91 -----------~~~~~--~~p--~v~ViDp~~si~~~~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~ 155 (340)
..|.. +.. .+.+|+|+-++. +.|| .++.+|.++... +.- .+++. + +.+. .+..
T Consensus 475 ~~~~~g~p~~g~~~~~~l~~~~~~v~~ieP~wk~L-lsNK-aiLalLW~l~p~---hp~-LLpt~-f--~~~~---~~~~ 542 (652)
T 2vob_A 475 GENWKPSPKDKVRLCDLLLGDDWEILYFEPMWKVI-PSNK-AILPMIYHNHPE---HPA-ILKAE-Y--ELTD---ELRK 542 (652)
T ss_dssp CSSCCCCTTSBCCHHHHHSSSCTTSEEESCGGGGT-TTST-THHHHHHHHCTT---CTT-BCCEE-S--SCCH---HHHH
T ss_pred ccccccCccchhHHHHHHhcCCCceEEeChhHHHh-hcCH-HHHHHHHhcccC---CCC-CCchh-h--cCCC---cccc
Confidence 02321 245 799999987764 5899 566777764221 121 23333 1 2211 1111
Q ss_pred hCCCCcEEEecCCCCCCCcceeeEEEeChhh-hhcc-----CCCeEEEecccCC-----CeEEEEEEECCEEEE-EEeec
Q 019509 156 AGLKLPLVAKPLVVDGSAKSHELFLAYDRFS-LSEL-----EPPMLLQEFVNHG-----GILFKIYIIGETIKV-VRRFS 223 (340)
Q Consensus 156 ~~l~~PvVvKP~~a~Gs~~sh~m~iv~~~~~-L~~l-----~~p~v~QEfI~h~-----G~~~KV~ViG~~v~~-~~R~s 223 (340)
. ..|.||+. |- ++.+|.++....+ ..+. +.++|+|||++-. -..+=+|++|++... ..|-+
T Consensus 543 ~----~yV~KPi~--gR-eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 543 H----GYAKKPIV--GR-VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp H----CEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred C----CeEeccCC--CC-CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 2 49999998 43 6788988764322 1221 4689999999854 236789999999764 57765
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=92.08 E-value=0.066 Score=53.25 Aligned_cols=134 Identities=14% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCccEEEEccCchhh-------------HHHHHHHHHhCCCeeecChHHHHHHhcCHHHHHHHHH---hccccCCCCcc-
Q 019509 72 GPFDVVLHKLSGMEW-------------CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA---DLNLSDCNGKV- 134 (340)
Q Consensus 72 ~~~DvilhK~t~~~~-------------~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~~~L~---~~~~~~~~~~I- 134 (340)
.+.|+|+-|+.+... ...++.|.+ -.|.++|++-+- .+.||. ++..|- +.-+... .-+
T Consensus 268 ~~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~--G~V~i~Na~gsg-v~~dKa-l~a~Lp~l~~~~lgEe-~il~ 342 (474)
T 3n6x_A 268 KRVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRN--GGVTLANAVGTG-VADDKD-TYIYVPEMIRFYLGEE-PILS 342 (474)
T ss_dssp EEECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHT--TSCEEESCTTTH-HHHSTT-TGGGHHHHHHHHHCSC-CSSE
T ss_pred eEEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHc--CCEEEeCCCchh-hhcCcH-HHHHhHHHHHHhCCHh-hhcc
Confidence 479999999965311 135676764 569999999986 788884 121111 1111111 112
Q ss_pred ccCcEEEEecCCCChhhHHHhhCCCCcEEEecCCCCCCCcceeeEEEe--Chhhhhcc-----CCC--eEEEecccCC--
Q 019509 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY--DRFSLSEL-----EPP--MLLQEFVNHG-- 203 (340)
Q Consensus 135 ~~P~~~~~~~~~~~~~~~l~~~~l~~PvVvKP~~a~Gs~~sh~m~iv~--~~~~L~~l-----~~p--~v~QEfI~h~-- 203 (340)
.+| |+.+. +.+.....+. ++. -+|+||..+. ++.+|.+-. +.++..++ ..| +|+||+|+-+
T Consensus 343 ~Vp-T~~c~-~~~~~~~vl~--~l~-~lViKp~~g~---gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~ 414 (474)
T 3n6x_A 343 NVP-TYQLS-KADDLKYVLD--NLA-ELVVKEVQGS---GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTC 414 (474)
T ss_dssp ECC-CEETT-SHHHHHHHHH--SGG-GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEE
T ss_pred CCC-ceecC-CHHHHHHHHh--chh-heEEEecCCC---CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCccc
Confidence 345 33332 2212222222 222 6999998844 356776532 33444432 457 9999999743
Q ss_pred -----C------eEEEEEEE-CCEEEE
Q 019509 204 -----G------ILFKIYII-GETIKV 218 (340)
Q Consensus 204 -----G------~~~KV~Vi-G~~v~~ 218 (340)
| .++|+|++ |+.+.+
T Consensus 415 P~~~~~~~~~r~~dlR~F~~~g~~~~v 441 (474)
T 3n6x_A 415 PTLVETGIAPRHVDLRPFVLSGKTVSL 441 (474)
T ss_dssp EEEETTEEEEEEEEEECEEEESSSEEE
T ss_pred ceeeCCceeeeeEEEEEEEEcCCceEE
Confidence 2 47899988 554443
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=85.66 E-value=1.8 Score=42.35 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=53.5
Q ss_pred cccCcEEEEecCCCChhhHH-HhhCCC-CcEEEecCCC-CCCCcceeeEEEeChhhhhcc-----------C------CC
Q 019509 134 VRVPRQMVITKDSLSIPDQV-FEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----------E------PP 193 (340)
Q Consensus 134 I~~P~~~~~~~~~~~~~~~l-~~~~l~-~PvVvKP~~a-~Gs~~sh~m~iv~~~~~L~~l-----------~------~p 193 (340)
+..|++.++. ...+..+.. ....++ ||+|+|+.+. .|-....+|.+..+.++.++. . .-
T Consensus 26 ~~~~~~~~~~-~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVT-PDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEEC-TTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeC-CCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 4566677775 333333322 234677 9999999763 233466789999888776532 0 23
Q ss_pred eEEEecccCC-CeEEEEEEECCE
Q 019509 194 MLLQEFVNHG-GILFKIYIIGET 215 (340)
Q Consensus 194 ~v~QEfI~h~-G~~~KV~ViG~~ 215 (340)
+++|++++++ ++.+-+.+.-|+
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr 127 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATR 127 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEET
T ss_pred EEEEecccCCCCceEEEEEEecC
Confidence 8999999986 788877776555
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=68.55 E-value=11 Score=39.97 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=52.3
Q ss_pred cccCcEEEEecCCCChhhHHH-hhCCC-CcEEEecCCCC-CCCcceeeEEEeChhhhhcc---------C--------CC
Q 019509 134 VRVPRQMVITKDSLSIPDQVF-EAGLK-LPLVAKPLVVD-GSAKSHELFLAYDRFSLSEL---------E--------PP 193 (340)
Q Consensus 134 I~~P~~~~~~~~~~~~~~~l~-~~~l~-~PvVvKP~~a~-Gs~~sh~m~iv~~~~~L~~l---------~--------~p 193 (340)
+..|++.++. ...+..+... ...|+ +|+|+|+.+.. |-.++.+|.+..+.++.++. . .-
T Consensus 26 ~~~~~~~~v~-~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~g 104 (829)
T 3pff_A 26 QNRFKYARVT-PDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (829)
T ss_dssp CSTTCCEEEC-TTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred ccCCceEEeC-CCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 3356777775 3334333222 22455 89999996543 33455688888898776532 1 23
Q ss_pred eEEEecccCC-CeEEEEEEECCE
Q 019509 194 MLLQEFVNHG-GILFKIYIIGET 215 (340)
Q Consensus 194 ~v~QEfI~h~-G~~~KV~ViG~~ 215 (340)
+++|++++++ ++.|-+-+.-|+
T Consensus 105 vLVE~m~~~~~~~ElYvgI~~Dr 127 (829)
T 3pff_A 105 FLIEPFVPHSQAEEFYVCIYATR 127 (829)
T ss_dssp EEEEECCCCCGGGEEEEEEEEET
T ss_pred EEEEecccCCCccEEEEEEEecC
Confidence 8999999986 788877777555
No 79
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=60.03 E-value=42 Score=26.03 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=51.1
Q ss_pred cccchHHHHHHHhCCCEEEEe--cCCCCCCCCCCccEEEEccCchhhHHHHHHHHHh-CCCeeecChHHHHHHhcCHHHH
Q 019509 42 SFLQPKLEILARNKGISFVAI--DQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQSM 118 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~~i--d~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~~si~~~~dR~~~ 118 (340)
++.-.+..++|+++|+++... ....--.....+|+||.=-.-.+....+++.... +-++.|||+-+-....+|=-..
T Consensus 20 sllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~~v 99 (108)
T 3nbm_A 20 AQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKA 99 (108)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCHHHH
Confidence 455568899999999998774 3443222235699998633322333555555533 3458899997777656776555
Q ss_pred HHHHH
Q 019509 119 LQDVA 123 (340)
Q Consensus 119 ~~~L~ 123 (340)
+....
T Consensus 100 l~~~~ 104 (108)
T 3nbm_A 100 LQFVL 104 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 80
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=54.37 E-value=17 Score=34.15 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=44.2
Q ss_pred CccchhhhhhhccCCCCCCcEEEEEEecCCC-cccccc---hHHHHHHHhCC--CEEEEecCCCCCCC---------CCC
Q 019509 9 HKEDEEDEEEKQSGVLQPERLVVGYALTSKK-KKSFLQ---PKLEILARNKG--ISFVAIDQNRPLSD---------QGP 73 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~VG~~~~~kK-~~~~~~---~~l~~~a~~~g--i~~~~id~~~~l~~---------q~~ 73 (340)
|.|+.-++..+-++......++||+..+-.. -++|.. +-+.+++++.| +++..++....-.+ +..
T Consensus 7 ~~~~~~~~~~~g~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g 86 (356)
T 3s99_A 7 HHMGTLEAQTQGPGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAG 86 (356)
T ss_dssp -------------------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTT
T ss_pred ccccceecccCCcccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCC
Confidence 5566554444444445566899999996322 235543 45778888999 88877765432111 134
Q ss_pred ccEEEEccCchhhHHHHHHHHHhCCCeee
Q 019509 74 FDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (340)
Q Consensus 74 ~DvilhK~t~~~~~~~l~~~~~~~p~v~V 102 (340)
+|+||. ++......+.+.++++|++++
T Consensus 87 ~d~Ii~--~g~~~~~~~~~vA~~~Pdv~f 113 (356)
T 3s99_A 87 NKLIFT--TSFGYMDPTVKVAKKFPDVKF 113 (356)
T ss_dssp CSEEEE--CSGGGHHHHHHHHTTCTTSEE
T ss_pred CCEEEE--CCHHHHHHHHHHHHHCCCCEE
Confidence 787764 232233456666667776443
No 81
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=46.95 E-value=46 Score=31.22 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=48.5
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-.+..+++...-... .=+|+|..|...+.....+.+|
T Consensus 43 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 119 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 119 (333)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHh
Confidence 46778776654 554433 4888999999999999876421111 2279999998876444444444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
.+++|||=
T Consensus 120 ----~~vPVINa 127 (333)
T 1duv_G 120 ----ASVPVWNG 127 (333)
T ss_dssp ----HSSCEEES
T ss_pred ----CCCCeEcC
Confidence 46899983
No 82
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=44.64 E-value=59 Score=31.38 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=41.8
Q ss_pred EEEecCCCCCCCcceeeEEEeChhhhhccC----------------CCeEEEecccCCCe------EEEEEEECCEEEE-
Q 019509 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHGGI------LFKIYIIGETIKV- 218 (340)
Q Consensus 162 vVvKP~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~v~QEfI~h~G~------~~KV~ViG~~v~~- 218 (340)
||||-.. |+ .+-|+..|.+.+++..++ ..+|+||=|.+--+ .==||+||.+|++
T Consensus 280 V~VKADa--GT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 280 VIVKADA--GT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp EEEEEEC--GG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 6899554 66 778888899999887762 24899998876521 3358999999876
Q ss_pred EEe
Q 019509 219 VRR 221 (340)
Q Consensus 219 ~~R 221 (340)
..|
T Consensus 357 FyR 359 (432)
T 3k1t_A 357 FYR 359 (432)
T ss_dssp EEE
T ss_pred EEE
Confidence 344
No 83
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=44.15 E-value=58 Score=30.61 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=47.5
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++++..-...| =+|+|..|...... ++++
T Consensus 62 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~---~~~l 135 (339)
T 4a8t_A 62 KNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHS---IVDL 135 (339)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHH---HHHH
T ss_pred CCceEEEEecCCCchHHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHH---HHHH
Confidence 46677776654 554444 48889999999999998754221111 17999999887633 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 136 A-~~~~vPVINa 146 (339)
T 4a8t_A 136 A-NCATIPVING 146 (339)
T ss_dssp H-HHCSSCEEEC
T ss_pred H-HhCCCCEEEC
Confidence 3 3467999984
No 84
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=43.69 E-value=40 Score=31.93 Aligned_cols=72 Identities=8% Similarity=0.123 Sum_probs=47.9
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++++..-... .=+|+|..|...... ++++
T Consensus 40 ~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~---~~~l 113 (355)
T 4a8p_A 40 KNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHS---IVDL 113 (355)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHH---HHHH
T ss_pred CCCEEEEEecCCChhhHh---hHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHH---HHHH
Confidence 46677776654 555443 4888999999999999875411111 228999999887633 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 114 A-~~~~vPVINa 124 (355)
T 4a8p_A 114 A-NCATIPVING 124 (355)
T ss_dssp H-HHCSSCEEEC
T ss_pred H-HhCCCCEEeC
Confidence 3 3467999984
No 85
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=43.40 E-value=44 Score=28.95 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=28.4
Q ss_pred CCCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 25 QPERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 25 ~~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
.....+||+.++.-.-.-+ ....+.++|+++|+++...+...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3456899999987532111 22357788899999998877553
No 86
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.07 E-value=45 Score=28.98 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 26 PERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
....+||+.++.-.-.-+ ....+.++|+++|+++...+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN 48 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 356899999987542222 23357888999999998887653
No 87
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=41.75 E-value=51 Score=28.55 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
...+||+.++...-.-+ ....+.++|+++|+++...+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 45 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGR 45 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 46789999986542222 23457888999999998886543
No 88
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.34 E-value=73 Score=27.53 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred cEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 28 RLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
+.+||+.++.-.-.-+ ....+.++|+++|+++...+...
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 55 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNN 55 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3899999987542222 23357788999999998887653
No 89
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=41.00 E-value=51 Score=30.75 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=48.1
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++....-...| =+|+|..|...+.. ++++
T Consensus 45 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~---~~~l 118 (321)
T 1oth_A 45 QGKSLGMIFEKRSTRTRL---STETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSD---LDTL 118 (321)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHH---HHHH
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhH---HHHH
Confidence 56777776654 554443 48889999999999998865211111 17999999887643 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 119 A-~~~~vPVINa 129 (321)
T 1oth_A 119 A-KEASIPIING 129 (321)
T ss_dssp H-HHCSSCEEES
T ss_pred H-HhCCCCEEcC
Confidence 3 4467999983
No 90
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=40.91 E-value=1.4e+02 Score=25.49 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=45.4
Q ss_pred CCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCCCC--CccEEEEccCchhhHHHHHHHHHhCCCee
Q 019509 26 PERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSDQG--PFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~q~--~~DvilhK~t~~~~~~~l~~~~~~~p~v~ 101 (340)
....+||+.++.-.-.-+ ....+.++|+++|+++...+.+.....+. .+|.||.-..+.. ...+....+..-+++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV 84 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP-TKEIEKFAERGHSIV 84 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTSC-HHHHHHHHHTTCEEE
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhhccccEEEEecCCCC-HHHHHHHHhcCCCEE
Confidence 346789999986432111 22356788899999998887654333222 6898876544321 133333333333466
Q ss_pred ecCh
Q 019509 102 ILDP 105 (340)
Q Consensus 102 ViDp 105 (340)
++|.
T Consensus 85 ~~~~ 88 (277)
T 3cs3_A 85 VLDR 88 (277)
T ss_dssp ESSS
T ss_pred EEec
Confidence 6664
No 91
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=40.62 E-value=63 Score=27.83 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.6
Q ss_pred CcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEE
Q 019509 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVL 78 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~Dvil 78 (340)
...+||+.++.-.-.-+ ....+.++|+++|+++...+.+ .... ...+|.||
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 46789999987542222 2334678889999999998877 3332 25789888
No 92
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.05 E-value=22 Score=27.36 Aligned_cols=76 Identities=17% Similarity=0.074 Sum_probs=42.5
Q ss_pred cccchHHHHHHHhCCCEEE--EecCCCCCCCCCCccEEEEccCchhhHHHHHHHHHhCCCeeecChHHHHHHhcCHHHHH
Q 019509 42 SFLQPKLEILARNKGISFV--AIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSML 119 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~~--~id~~~~l~~q~~~DvilhK~t~~~~~~~l~~~~~~~p~v~ViDp~~si~~~~dR~~~~ 119 (340)
|+...++.++++++|+++. ..+...--.....+|+||.=-.-......+++.... -+++|||+..-. .+|--..+
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~-~~v~vI~~~~yg--~~~g~~vl 93 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN-KPVEVIDSLLYG--KVDGLGVL 93 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSS-SCCCBCCHHHHT--TTCTTHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcC-CCceEECHHHcc--CCCHHHHH
Confidence 4555689999999998754 334443222234689998433222223344443323 369999976653 24544433
Q ss_pred H
Q 019509 120 Q 120 (340)
Q Consensus 120 ~ 120 (340)
+
T Consensus 94 ~ 94 (106)
T 1e2b_A 94 K 94 (106)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=39.14 E-value=84 Score=29.30 Aligned_cols=72 Identities=10% Similarity=0.157 Sum_probs=48.3
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++....-... .=+|+|..|.........+.+|
T Consensus 57 ~gk~la~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTRL---AFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 46778877754 444333 4888999999999999875421111 2279999998876444444444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
.+++|||=
T Consensus 134 ----~~vPVINa 141 (325)
T 1vlv_A 134 ----SGVPVYNG 141 (325)
T ss_dssp ----HCSCEEES
T ss_pred ----CCCCEEeC
Confidence 36899984
No 94
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=38.97 E-value=74 Score=29.38 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=48.7
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC-----------C--CccEEEEccCchhhHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ-----------G--PFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q-----------~--~~DvilhK~t~~~~~~~l~~ 92 (340)
...+|+..+.+ |.+... +|..++.++|-....++++..-... . .+|+|..|...+.....+.
T Consensus 35 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la- 110 (304)
T 3r7f_A 35 TGKFAANLFFEPSTRTRF---SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELV- 110 (304)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHH-
T ss_pred CCCEEEEEecCCChhHHH---hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHH-
Confidence 45677776654 444333 4888999999999999885422211 1 2699999988765444443
Q ss_pred HHHhCCCeeecChH
Q 019509 93 YRQKHPEVTILDPP 106 (340)
Q Consensus 93 ~~~~~p~v~ViDp~ 106 (340)
++.++||||=.
T Consensus 111 ---~~~~vPVINag 121 (304)
T 3r7f_A 111 ---SQVNIPILNAG 121 (304)
T ss_dssp ---HHCSSCEEESC
T ss_pred ---HhCCCCEEeCC
Confidence 34679999853
No 95
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=38.54 E-value=64 Score=28.42 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=43.9
Q ss_pred cEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEEEccCchhh-HHHHHHHHH
Q 019509 28 RLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEW-CKIIEDYRQ 95 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~DvilhK~t~~~~-~~~l~~~~~ 95 (340)
+.+||+.++...-.-+ ....+.++|+++|+++...+....... ...+|.||.-..+... ...+.+..+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 81 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ 81 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH
Confidence 4689999987432222 233578889999999998876542221 2457777765544321 233444443
Q ss_pred hCCCeeecC
Q 019509 96 KHPEVTILD 104 (340)
Q Consensus 96 ~~p~v~ViD 104 (340)
..-+++++|
T Consensus 82 ~~iPvV~~~ 90 (313)
T 3m9w_A 82 EGIKVLAYD 90 (313)
T ss_dssp TTCEEEEES
T ss_pred CCCeEEEEC
Confidence 333355554
No 96
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=38.36 E-value=51 Score=30.62 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=47.7
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++....-... .=+|+|..|...+.. ++.+
T Consensus 45 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~---~~~l 118 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTRV---SFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKD---VEDL 118 (315)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHH---HHHH
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHH---HHHH
Confidence 46778876654 554433 4888999999999999875311111 227999999887643 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 119 A-~~~~vPVINa 129 (315)
T 1pvv_A 119 A-KYATVPVING 129 (315)
T ss_dssp H-HHCSSCEEEE
T ss_pred H-HhCCCCEEcC
Confidence 3 3457999984
No 97
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=36.75 E-value=45 Score=28.54 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=27.1
Q ss_pred cEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 28 RLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
..+||+.++.-.-.-+ ....+.++|+++|+++...+.+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 42 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD 42 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999987542222 23357788999999998876553
No 98
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=36.14 E-value=78 Score=29.98 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=47.9
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-.+..++....-...| =+|+|..|-........+.
T Consensus 66 ~Gk~la~lF~e~STRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA-- 140 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTRS---AFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILA-- 140 (359)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHH--
Confidence 46778877754 444333 48889999999999998764222111 1799999987664433333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
++.+++|||=
T Consensus 141 --~~s~vPVINa 150 (359)
T 2w37_A 141 --RDSGVPVWNG 150 (359)
T ss_dssp --HHSSSCEEEE
T ss_pred --HhCCCCEEcC
Confidence 3457999983
No 99
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=35.28 E-value=70 Score=29.81 Aligned_cols=72 Identities=7% Similarity=0.134 Sum_probs=44.3
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC-CCC-----------CCCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP-LSD-----------QGPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~~-----------q~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++++.. +.. ..=+|+|..|.........+.+|
T Consensus 47 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 123 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTRV---SFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHY 123 (323)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchHh---hHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHh
Confidence 45677777654 444333 488899999999999987531 111 12289999998876443444433
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
.+++|||=
T Consensus 124 ----~~vPVINa 131 (323)
T 3gd5_A 124 ----AGIPVINA 131 (323)
T ss_dssp ----HCSCEEEE
T ss_pred ----CCCCEEeC
Confidence 46899984
No 100
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=35.18 E-value=77 Score=29.69 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=47.8
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-.+..++++..-...| =+|+|..|...+.....+.
T Consensus 44 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA-- 118 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTRC---AFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELA-- 118 (335)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHH--
Confidence 46778877754 444333 48889999999999998764221111 1799999987664333333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
++.++||||=
T Consensus 119 --~~s~vPVINa 128 (335)
T 1dxh_A 119 --KFAGVPVFNG 128 (335)
T ss_dssp --HHSSSCEEEE
T ss_pred --HhCCCCEEcC
Confidence 3457999994
No 101
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=34.88 E-value=1.1e+02 Score=28.23 Aligned_cols=73 Identities=10% Similarity=0.224 Sum_probs=47.6
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCCC------------ccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~~------------~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..+++...-...|+ +|+|..|...+.. ++++
T Consensus 35 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~---~~~l 108 (307)
T 3tpf_A 35 QDKTLAMIFEKNSTRTRM---AFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHET---LLEF 108 (307)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHH---HHHH
T ss_pred CCCEEEEEecCCCcchHH---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHH---HHHH
Confidence 45667776654 444333 488899999999999987542111111 7999999887633 3333
Q ss_pred HHhCCCeeecChH
Q 019509 94 RQKHPEVTILDPP 106 (340)
Q Consensus 94 ~~~~p~v~ViDp~ 106 (340)
+ ++.+++|||=.
T Consensus 109 A-~~~~vPVINag 120 (307)
T 3tpf_A 109 A-RYSKAPVINAL 120 (307)
T ss_dssp H-HHCSSCEEEEE
T ss_pred H-HhCCCCEEeCC
Confidence 3 34679999843
No 102
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=34.76 E-value=50 Score=30.86 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=47.6
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCC------------CCC------------ccEEEEcc
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSD------------QGP------------FDVVLHKL 81 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~------------q~~------------~DvilhK~ 81 (340)
...+|+..+.+ |.+... +|..++.++|-++..++....-.. .|+ +|+|..|.
T Consensus 35 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~IviR~ 111 (324)
T 1js1_X 35 RNKTLLMIFFNSSLRTRL---STQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRS 111 (324)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEEec
Confidence 56778776654 544443 488899999999999987542111 222 79999998
Q ss_pred Cch----h---hHHHHHHHHHhCCCeeecCh
Q 019509 82 SGM----E---WCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 82 t~~----~---~~~~l~~~~~~~p~v~ViDp 105 (340)
... . ....++.++ ++.+++|||=
T Consensus 112 ~~~~~~~~~~~~~~~~~~lA-~~~~vPVINa 141 (324)
T 1js1_X 112 FARFENREYDYNEVIINQFI-QHSGRPVFSM 141 (324)
T ss_dssp CCCSSCHHHHHHTHHHHHHH-HHSSSCEEES
T ss_pred ccccccccccccchHHHHHH-hhCCCCEEEC
Confidence 721 0 112333333 4567999993
No 103
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=34.26 E-value=47 Score=30.72 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=47.5
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++....-...| =+|+|..|...+.. ++++
T Consensus 38 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~---~~~l 111 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTRF---SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQER---LDAM 111 (307)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHH---HHHH
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhH---HHHH
Confidence 46778876654 554433 48889999999999998753111111 17999999886643 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 112 A-~~~~vPVINa 122 (307)
T 2i6u_A 112 A-SVATVPVINA 122 (307)
T ss_dssp H-HHCSSCEEES
T ss_pred H-hhCCCCEEcC
Confidence 3 3457999983
No 104
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=33.97 E-value=92 Score=29.37 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=47.7
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+-.+.+ |.+...+ |..++.++|-++..+++...-...| =+|+|..|...... ++++
T Consensus 69 ~GK~la~lF~epSTRTR~S---FE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~---~~~l 142 (358)
T 4h31_A 69 LGKNIALIFEKASTRTRCA---FEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAI---VEEL 142 (358)
T ss_dssp TTCEEEEEESSCCSHHHHH---HHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHH---HHHH
T ss_pred CCCEEEEEeCCCChhhHHH---HHHHHHHcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhH---HHHh
Confidence 45677776664 6654444 8889999999999998764222111 17999999876633 3333
Q ss_pred HHhCCCeeecC
Q 019509 94 RQKHPEVTILD 104 (340)
Q Consensus 94 ~~~~p~v~ViD 104 (340)
. ++.+++|||
T Consensus 143 a-~~s~vPVIN 152 (358)
T 4h31_A 143 G-AFAGVPVWN 152 (358)
T ss_dssp H-HHSSSCEEE
T ss_pred h-hhccCceEC
Confidence 3 346789998
No 105
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.79 E-value=74 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.2
Q ss_pred CcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
+..+||+.++...-.-| ....+.++|+++|+++...+.+
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 42 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD 42 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 35789999987542222 2335788899999998887643
No 106
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=33.76 E-value=73 Score=29.37 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCC------------CCccEEEEccCchhhHHHHHH
Q 019509 26 PERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 26 ~~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q------------~~~DvilhK~t~~~~~~~l~~ 92 (340)
-...+|+..+.+ |.+... +|..++.++|-++..++....-... .=+|+|..|...+.....+.
T Consensus 43 L~gk~~~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la- 118 (301)
T 2ef0_A 43 LKGKVLALLFEKPSLRTRT---TLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALA- 118 (301)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHH-
T ss_pred CCCCEEEEEeccCCcchHH---HHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHH-
Confidence 356778877654 444333 4888999999999999875311111 22799999988764433333
Q ss_pred HHHhCCCeeecCh
Q 019509 93 YRQKHPEVTILDP 105 (340)
Q Consensus 93 ~~~~~p~v~ViDp 105 (340)
++.+++|||=
T Consensus 119 ---~~~~vPVINa 128 (301)
T 2ef0_A 119 ---RHAKVPVVNA 128 (301)
T ss_dssp ---HHCSSCEEEE
T ss_pred ---HHCCCCEEeC
Confidence 3457999983
No 107
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.42 E-value=1.6e+02 Score=25.35 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=25.6
Q ss_pred CcEEEEEEecC-C---Ccccc---cchHHHHHHHhCCCEEEEecCC
Q 019509 27 ERLVVGYALTS-K---KKKSF---LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 27 ~~~~VG~~~~~-k---K~~~~---~~~~l~~~a~~~gi~~~~id~~ 65 (340)
...+||+.++. - . ..| ....+.++|+++|+++...+.+
T Consensus 3 ~s~~Ig~i~~~~~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQV-NHILDQFLSSMVREAGAVNYFVLPFPFS 47 (287)
T ss_dssp CCCEEEECCCCCCTTCS-CCTHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ceeEEEEEecccccccC-ChhHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45689999876 3 2 122 2234677889999999877654
No 108
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=32.36 E-value=80 Score=29.65 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=46.3
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..+++...-...| =+|+|..|...... ++++
T Consensus 69 ~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~---~~~l 142 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTRV---SFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHAD---VEEL 142 (340)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHH---HHHH
T ss_pred CCceEEEEecCCCccHHH---HHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhH---HHHH
Confidence 45677776654 444333 48889999999999998753111111 17999999887633 3333
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
+ ++.+++|||=
T Consensus 143 A-~~~~vPVINa 153 (340)
T 4ep1_A 143 A-KESSIPVING 153 (340)
T ss_dssp H-HHCSSCEEEE
T ss_pred H-HhCCCCEEeC
Confidence 3 3457999983
No 109
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=31.02 E-value=77 Score=29.31 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=48.2
Q ss_pred CCcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCCCCCCC------------CccEEEEccCchhhHHHHHH
Q 019509 26 PERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 26 ~~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~l~~q~------------~~DvilhK~t~~~~~~~l~~ 92 (340)
-...+|+..+.+ |.+... +|..++.++|-++..++++..-...| =+|+|..|...+. .+++
T Consensus 43 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~---~~~~ 116 (309)
T 4f2g_A 43 LHDRTLAMIFEKSSTRTRL---SFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQD---IIQR 116 (309)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHH---HHHH
T ss_pred cCCceEEEEecCCChhhHh---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHH---HHHH
Confidence 345677777654 444333 48889999999999998753111111 1799999988763 3444
Q ss_pred HHHhCCCeeecCh
Q 019509 93 YRQKHPEVTILDP 105 (340)
Q Consensus 93 ~~~~~p~v~ViDp 105 (340)
++ ++.+++|||=
T Consensus 117 lA-~~~~vPVINa 128 (309)
T 4f2g_A 117 FA-ENSRVPVING 128 (309)
T ss_dssp HH-HTCSSCEEEE
T ss_pred HH-HhCCCCEEEC
Confidence 43 4678999984
No 110
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.84 E-value=75 Score=27.75 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 27 ERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
.+++||+.++...-.-+ ....+.++|+++|+++...+.+
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 42 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPP 42 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCC
Confidence 46899999987632222 2235778899999999988765
No 111
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=28.14 E-value=97 Score=26.92 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=44.1
Q ss_pred cEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEEEccCchhhH-HHHHHHHH
Q 019509 28 RLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEWC-KIIEDYRQ 95 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~DvilhK~t~~~~~-~~l~~~~~ 95 (340)
.++||+.++.-.-.-+ ....+.++|+++|+++..++... ... ...+|.||.-..+.... ..+++..+
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD-GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCS-HHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 5899999986532222 22357788999999998887642 211 13478777655443222 22444444
Q ss_pred hCCCeeecC
Q 019509 96 KHPEVTILD 104 (340)
Q Consensus 96 ~~p~v~ViD 104 (340)
..-+++++|
T Consensus 81 ~~iPvV~~~ 89 (306)
T 8abp_A 81 YDMKVIAVD 89 (306)
T ss_dssp TTCEEEEES
T ss_pred CCCcEEEeC
Confidence 444456666
No 112
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=28.13 E-value=2.3e+02 Score=22.72 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=25.9
Q ss_pred CcEEEEEEecCCCcc----cccch--HHHHHHHhCCCEEEE
Q 019509 27 ERLVVGYALTSKKKK----SFLQP--KLEILARNKGISFVA 61 (340)
Q Consensus 27 ~~~~VG~~~~~kK~~----~~~~~--~l~~~a~~~gi~~~~ 61 (340)
...+++|+=-.++.+ ++..+ .+.++|+++|++++.
T Consensus 4 ~~r~~~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~~ 44 (167)
T 3guv_A 4 KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVG 44 (167)
T ss_dssp CCEEEEEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 356899998887655 56444 478899999998753
No 113
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=28.05 E-value=1.7e+02 Score=26.82 Aligned_cols=74 Identities=9% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecC-CCCCCCCC------------CccEEEEccCchhhHHHHH
Q 019509 26 PERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQ-NRPLSDQG------------PFDVVLHKLSGMEWCKIIE 91 (340)
Q Consensus 26 ~~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~-~~~l~~q~------------~~DvilhK~t~~~~~~~l~ 91 (340)
-...+|+..+.+ |.+... +|..++.++|-++..++. +..-...| =+|+|..|...+.....+.
T Consensus 38 L~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA 114 (306)
T 4ekn_B 38 LEGKILATVFYEPSTRTRL---SFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLAS 114 (306)
T ss_dssp TTTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSSTTHHHHHH
T ss_pred cCCceEEEEEcCCChhHHh---hHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCChHHHHHHH
Confidence 356778877765 433333 488899999999999986 33111111 1599999988764433333
Q ss_pred HHHHhCCCeeecChH
Q 019509 92 DYRQKHPEVTILDPP 106 (340)
Q Consensus 92 ~~~~~~p~v~ViDp~ 106 (340)
++.+++|||=.
T Consensus 115 ----~~~~vPVINag 125 (306)
T 4ekn_B 115 ----EYSQVPIINAG 125 (306)
T ss_dssp ----HHCSSCEEESC
T ss_pred ----HhCCCCEEeCC
Confidence 34679999853
No 114
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=27.70 E-value=1.1e+02 Score=26.74 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=41.7
Q ss_pred CCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEEEccCchhhHHHHHHHH
Q 019509 26 PERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEWCKIIEDYR 94 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~DvilhK~t~~~~~~~l~~~~ 94 (340)
....+||+.++.-.-.-+ ....+.++|+++|+++...+....... ...+|.||.--.+......+..+.
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~ 92 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVL 92 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHH
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHh
Confidence 346789999987542222 223577889999999988876542221 246777766443322111334443
Q ss_pred HhCCCeeecC
Q 019509 95 QKHPEVTILD 104 (340)
Q Consensus 95 ~~~p~v~ViD 104 (340)
+ .-+++++|
T Consensus 93 ~-~iPvV~i~ 101 (303)
T 3kke_A 93 E-GVPAVTIN 101 (303)
T ss_dssp T-TSCEEEES
T ss_pred C-CCCEEEEC
Confidence 3 33355555
No 115
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=27.45 E-value=16 Score=27.59 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=16.3
Q ss_pred EecccCC--CeEEEEEEECCE
Q 019509 197 QEFVNHG--GILFKIYIIGET 215 (340)
Q Consensus 197 QEfI~h~--G~~~KV~ViG~~ 215 (340)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699999 999999999887
No 116
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.96 E-value=1.8e+02 Score=25.16 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=42.4
Q ss_pred CcEEEEEEecCCC---cccc---cchHHHHHHHhCCCEEEEecCCCCCCC---------CCCccEEEEccCchhhHHHHH
Q 019509 27 ERLVVGYALTSKK---KKSF---LQPKLEILARNKGISFVAIDQNRPLSD---------QGPFDVVLHKLSGMEWCKIIE 91 (340)
Q Consensus 27 ~~~~VG~~~~~kK---~~~~---~~~~l~~~a~~~gi~~~~id~~~~l~~---------q~~~DvilhK~t~~~~~~~l~ 91 (340)
...+||+.++... ...| ....+.++|+++|+++...+.+. ... ...+|.||.-...... ..+.
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~ 82 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRRVDALIVAHTQPED-FRLQ 82 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTCCSEEEECSCCSSC-HHHH
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHHH
Confidence 4678999998421 1112 22346788899999999887654 211 1457777654433211 3334
Q ss_pred HHHHhCCCeeecC
Q 019509 92 DYRQKHPEVTILD 104 (340)
Q Consensus 92 ~~~~~~p~v~ViD 104 (340)
.+.+..-+++++|
T Consensus 83 ~l~~~~iPvV~~~ 95 (294)
T 3qk7_A 83 YLQKQNFPFLALG 95 (294)
T ss_dssp HHHHTTCCEEEES
T ss_pred HHHhCCCCEEEEC
Confidence 3433333455555
No 117
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=25.81 E-value=70 Score=28.82 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=27.6
Q ss_pred cEEEEEEecCCCcccc---cchHHHHHHHhCCCEEEEecCCC
Q 019509 28 RLVVGYALTSKKKKSF---LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~---~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
..+||+.++......| ....+.++|+++|+++...+.+.
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~ 44 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAER 44 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 5689999987543223 22357888899999998886543
No 118
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.39 E-value=1.1e+02 Score=26.42 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCcEEEEEEecC-----CCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 26 PERLVVGYALTS-----KKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 26 ~~~~~VG~~~~~-----kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
....+||+.++. -.-.-+ ....+.++|+++|+++...+.+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 52 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGE 52 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999987 321111 2235678899999999886654
No 119
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=25.33 E-value=69 Score=30.43 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=47.0
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC-CCCC-----------CCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP-LSDQ-----------GPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~~q-----------~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-.+..++++.. +... .=+|+|..|-........+.+|
T Consensus 70 ~GK~va~lF~e~STRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 146 (365)
T 4amu_A 70 VGKNIAILFQKDSTRTRC---AFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALVKY 146 (365)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHH
T ss_pred CCceEEEEecCCCchHHH---HHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCChhHHHHHHHh
Confidence 46777776654 444333 488899999999999876421 1110 1179999998776444444444
Q ss_pred HHhCCCeeecCh
Q 019509 94 RQKHPEVTILDP 105 (340)
Q Consensus 94 ~~~~p~v~ViDp 105 (340)
.++||||=
T Consensus 147 ----s~vPVINa 154 (365)
T 4amu_A 147 ----SGVPVWNG 154 (365)
T ss_dssp ----HCSCEEEE
T ss_pred ----CCCCEEeC
Confidence 46899984
No 120
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.96 E-value=1.8e+02 Score=25.04 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=27.1
Q ss_pred CCcEEEEEEecCCCc-ccc---cchHHHHHHHhCCCEEEEecCCC
Q 019509 26 PERLVVGYALTSKKK-KSF---LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~-~~~---~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
....+||+.++.... ..| ....+.++|+++|+++...+...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 50 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH 50 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc
Confidence 356799999986542 122 22246778888999998876543
No 121
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.21 E-value=65 Score=27.96 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=27.7
Q ss_pred CCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 26 PERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
....+||+.++.-.-.-+ ....+.++|+++|+++...+...
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE 48 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 346799999987432111 23357788999999998876543
No 122
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=23.80 E-value=2e+02 Score=27.04 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=47.4
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC-CCC-----------CCCccEEEEccCchhhHHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP-LSD-----------QGPFDVVLHKLSGMEWCKIIEDY 93 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~-l~~-----------q~~~DvilhK~t~~~~~~~l~~~ 93 (340)
...+|+..+.+ |.+... +|..++.++|-++..++.+.. +.. ..=+|+|+.|...+.. ++++
T Consensus 65 ~gk~va~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~~---~~~l 138 (353)
T 3sds_A 65 SGKTVAMMFSKRSTRTRV---STEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSD---IANL 138 (353)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHHH---HHHH
T ss_pred CCCEEEEEecCCchhHHH---HHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChHH---HHHH
Confidence 45677776665 444333 488899999999998876532 111 0227999999876533 3333
Q ss_pred HHhCCCeeecChH
Q 019509 94 RQKHPEVTILDPP 106 (340)
Q Consensus 94 ~~~~p~v~ViDp~ 106 (340)
+ ++.+++|||=.
T Consensus 139 A-~~s~vPVINag 150 (353)
T 3sds_A 139 A-KHSSVPVINAL 150 (353)
T ss_dssp H-HHCSSCEEEEE
T ss_pred H-hhCCCCEEECC
Confidence 3 45679999853
No 123
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.79 E-value=63 Score=28.10 Aligned_cols=41 Identities=7% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCcEEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCCC
Q 019509 26 PERLVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQNR 66 (340)
Q Consensus 26 ~~~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~~ 66 (340)
....+||+.++.-.-.-+ ....+.++|+++|+++...+.+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~ 45 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG 45 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 356899999987542222 22357788899999999988764
No 124
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.52 E-value=2.5e+02 Score=21.10 Aligned_cols=80 Identities=29% Similarity=0.271 Sum_probs=47.0
Q ss_pred cccchHHHHHHHhCCCEE--EEecCCCCCC-CCCCccEEEEccCchhhHHHHHHHHHh-CCCeeecChHHHHHHhcCHHH
Q 019509 42 SFLQPKLEILARNKGISF--VAIDQNRPLS-DQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQS 117 (340)
Q Consensus 42 ~~~~~~l~~~a~~~gi~~--~~id~~~~l~-~q~~~DvilhK~t~~~~~~~l~~~~~~-~p~v~ViDp~~si~~~~dR~~ 117 (340)
++...++.++++++|+++ ...+... +. ....+|+||.=..-......+++.... .-++.+||+..-. ..|.-.
T Consensus 18 Sll~~kl~~~~~~~gi~~~i~~~~~~~-~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~ 94 (109)
T 2l2q_A 18 SMLVQRIEKYAKSKNINATIEAIAETR-LSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEK 94 (109)
T ss_dssp CHHHHHHHHHHHHHTCSEEEEEECSTT-HHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHH
Confidence 466668999999999864 4444443 22 235789987643322222334433322 3457779998774 467766
Q ss_pred HHHHHHh
Q 019509 118 MLQDVAD 124 (340)
Q Consensus 118 ~~~~L~~ 124 (340)
.++.+.+
T Consensus 95 vl~~i~~ 101 (109)
T 2l2q_A 95 VLQLAIN 101 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 125
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=22.41 E-value=1e+02 Score=28.43 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=47.9
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC---CCC-----------CCCccEEEEccCchhhHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP---LSD-----------QGPFDVVLHKLSGMEWCKIIE 91 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~---l~~-----------q~~~DvilhK~t~~~~~~~l~ 91 (340)
...+|+-.+.+ |.+... +|..++.++|-++..++.... +.. ..=+|+|..|...+.....+.
T Consensus 40 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la 116 (310)
T 3csu_A 40 KHKVIASCFFEASTRTRL---SFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLAT 116 (310)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHH
Confidence 45677776654 433333 488899999999999987653 221 122799999988764433343
Q ss_pred HHHHhCCCeeecChHH
Q 019509 92 DYRQKHPEVTILDPPD 107 (340)
Q Consensus 92 ~~~~~~p~v~ViDp~~ 107 (340)
+|. ++++|||=.+
T Consensus 117 ~~~---~~vPVINag~ 129 (310)
T 3csu_A 117 EFS---GNVPVLNAGD 129 (310)
T ss_dssp HHC---TTCCEEEEEE
T ss_pred Hhc---CCCCEEcCcc
Confidence 332 3799999543
No 126
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.24 E-value=1.8e+02 Score=24.79 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCcEEEEEEecC--CCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 26 PERLVVGYALTS--KKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 26 ~~~~~VG~~~~~--kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
....+||+.++. -.-.-+ ....+.++|+++|+++...+.+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 60 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK 60 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346799999986 322111 2235678889999998887654
No 127
>2fv4_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; NMR {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=22.00 E-value=2.4e+02 Score=20.62 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCcEeE-EE-EEEecC-cCCeEEEEeccCCCCCCCccccHHHHHHHHHHHHH
Q 019509 270 ERLARELRHRLGLRLFN-ID-MIREHG-MRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQ 329 (340)
Q Consensus 270 ~~lA~~~~~~lGl~l~G-vD-vi~~~~-~g~~~~ViEVN~fPg~~g~~~~~~~l~~~l~~~i~ 329 (340)
..|=.++.+.||+.+-| .+ +++.++ +| ...|+++.. +| .+| ..+++||+.+.
T Consensus 22 ~~LKLkLYrsLGv~ld~~~~k~lI~n~~~~-dv~vv~id~--k~---S~f--FytnyiWd~L~ 76 (77)
T 2fv4_B 22 NILKLKLYRSLGVILDLENDQVLINRKNDG-NIDILPLDN--NL---SDF--YKTKYIWERLG 76 (77)
T ss_dssp HHHHHHHHHHTTEEEETTTTEEEEECSSSS-CEEEEECCC--TT---THH--HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCEEEecCccEEEEEeCCCC-ceeEEEcCC--Cc---chH--HHHHHHHHHhc
Confidence 34456799999988432 11 344333 34 455666652 33 444 57889999874
No 128
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=21.97 E-value=24 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=18.3
Q ss_pred CCeEEEecccCC--CeEEEEEEECCE
Q 019509 192 PPMLLQEFVNHG--GILFKIYIIGET 215 (340)
Q Consensus 192 ~p~v~QEfI~h~--G~~~KV~ViG~~ 215 (340)
.|+--+.|+||+ |-+|+|..+|+.
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~ 47 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDES 47 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETT
T ss_pred CCcchhhhccCCccchheeeeecCCc
Confidence 356667799999 999999999887
No 129
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=21.82 E-value=1.6e+02 Score=26.37 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCC---CCCCccEEEEc-cCc----hhhHHHHHHHHHhCCCeeecChHH
Q 019509 47 KLEILARNKGISFVAIDQNRPLS---DQGPFDVVLHK-LSG----MEWCKIIEDYRQKHPEVTILDPPD 107 (340)
Q Consensus 47 ~l~~~a~~~gi~~~~id~~~~l~---~q~~~DvilhK-~t~----~~~~~~l~~~~~~~p~v~ViDp~~ 107 (340)
.|.++-++.|+++..++...... ....||+||.= ... ...++.|.+|+++.-+++++--..
T Consensus 21 ~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG~~ 89 (259)
T 3rht_A 21 YLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGGWE 89 (259)
T ss_dssp HHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred HHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecCcc
Confidence 57888899999999999876432 24589998764 221 234578999998877788885443
No 130
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=21.22 E-value=2.1e+02 Score=26.20 Aligned_cols=72 Identities=6% Similarity=0.100 Sum_probs=45.9
Q ss_pred CcEEEEEEecC-CCcccccchHHHHHHHhCCCEEEEecCCCC--CCCC-----------CCccEEEEccCchhhHHHHHH
Q 019509 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRP--LSDQ-----------GPFDVVLHKLSGMEWCKIIED 92 (340)
Q Consensus 27 ~~~~VG~~~~~-kK~~~~~~~~l~~~a~~~gi~~~~id~~~~--l~~q-----------~~~DvilhK~t~~~~~~~l~~ 92 (340)
...+|+-.+.+ |.+... +|..++.++|-++..++.... +... .=+|+|..|...+.....+.
T Consensus 37 ~gk~~~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la- 112 (299)
T 1pg5_A 37 SGKTISIAFFEPSTRTYL---SFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFAS- 112 (299)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHH-
T ss_pred CCCEEEEEecCCCcchHH---hHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHH-
Confidence 45677776654 443333 488899999999999986542 2211 11799999988764433333
Q ss_pred HHHhCCCeeecCh
Q 019509 93 YRQKHPEVTILDP 105 (340)
Q Consensus 93 ~~~~~p~v~ViDp 105 (340)
++.+++|||=
T Consensus 113 ---~~~~vPVINa 122 (299)
T 1pg5_A 113 ---EISDIPVINA 122 (299)
T ss_dssp ---HHCSSCEEEE
T ss_pred ---HhCCCCEEeC
Confidence 3467999994
No 131
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=21.08 E-value=1.5e+02 Score=25.53 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=24.2
Q ss_pred EEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 29 LVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 29 ~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
.+||+.++.-.-.-| ....+.++|+++|+++...+.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~ 40 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ 40 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC
Confidence 579999876432111 2234677888999998877654
No 132
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.25 E-value=1.9e+02 Score=24.70 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=24.7
Q ss_pred EEEEEEecCCCcccc--cchHHHHHHHhCCCEEEEecCC
Q 019509 29 LVVGYALTSKKKKSF--LQPKLEILARNKGISFVAIDQN 65 (340)
Q Consensus 29 ~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi~~~~id~~ 65 (340)
.+||+.++.-.-.-+ ....+.++++++|+++...+..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 41 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ 41 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 579999886432111 2234677889999998877654
No 133
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=20.15 E-value=2.3e+02 Score=24.37 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=25.2
Q ss_pred cEEEEEEecCCCcccc--cchHHHHHHHhCCC-EEEEecCC
Q 019509 28 RLVVGYALTSKKKKSF--LQPKLEILARNKGI-SFVAIDQN 65 (340)
Q Consensus 28 ~~~VG~~~~~kK~~~~--~~~~l~~~a~~~gi-~~~~id~~ 65 (340)
..+||+.++.-.-.-+ ....+.++|+++|. ++...+..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 42 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 42 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECT
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3689999886432111 22356788899997 88877654
No 134
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.13 E-value=2.6e+02 Score=25.05 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=40.6
Q ss_pred hHHHHHHHhCC-CEEEEecCC------CCC-CCCCCccEEEEccCch----hhHHHHHHHHHhCCCeeecCh
Q 019509 46 PKLEILARNKG-ISFVAIDQN------RPL-SDQGPFDVVLHKLSGM----EWCKIIEDYRQKHPEVTILDP 105 (340)
Q Consensus 46 ~~l~~~a~~~g-i~~~~id~~------~~l-~~q~~~DvilhK~t~~----~~~~~l~~~~~~~p~v~ViDp 105 (340)
..|.++.++.| +++...+.. ..+ +....||+||+-.+.. ...+.+++|+++.-+++++=.
T Consensus 23 ~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~~~~~l~~~~~~~l~~yV~~Ggglv~~H~ 94 (281)
T 4e5v_A 23 VVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDYNGDSWPEETNRRFLEYVQNGGGVVIYHA 94 (281)
T ss_dssp HHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECCCSSCCCHHHHHHHHHHHHTTCEEEEEGG
T ss_pred HHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeCCCCcCCHHHHHHHHHHHHcCCCEEEEec
Confidence 35777888888 999887531 112 2345799999755422 335678999988888888765
Done!