RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 019509
         (340 letters)



>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 327

 Score = 30.6 bits (68), Expect = 0.25
 Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 17/122 (13%)

Query: 146 SLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGI 205
              IP Q        P V  P        +  L L        + +   L       G +
Sbjct: 5   ETPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQ---TIKTQKHYLDSLLHESGAV 61

Query: 206 LFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265
           LF            R F + +    +   VV  F F  +     +A    +   +     
Sbjct: 62  LF------------RGFPVNSAD--DFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANE 107

Query: 266 RP 267
            P
Sbjct: 108 SP 109


>d2aiba1 a.134.1.1 (A:1-98) beta-cinnamomin {Fungus (Phytophthora
           cinnamomi) [TaxId: 4785]}
          Length = 98

 Score = 27.9 bits (62), Expect = 0.59
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 116 QSMLQDVADLNLSDC 130
            +M++ +  LN  DC
Sbjct: 57  NTMIKKIVALNPPDC 71


>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
           [TaxId: 354]}
          Length = 179

 Score = 28.1 bits (62), Expect = 0.98
 Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 270 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPD-----YEHIFTDFL 324
           + + +           N++ +         ++I      G G++P          + +FL
Sbjct: 19  KSIKKRFDDETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFL 78

Query: 325 LSLEQSKCRKRPATA 339
             +E      +    
Sbjct: 79  PKIEGLDFSGKTVAL 93


>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 27.1 bits (59), Expect = 2.9
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 211 IIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLE 270
           + G +  V    SLP + K+    ++ +       +      D  L     E+     ++
Sbjct: 183 VAGTSAVVQPAASLPLIVKQRGGAIIEINPDE---TPLTPIADYSLRGKAGEV-----MD 234

Query: 271 RLARELRHRLGLRL 284
            L R +R  L L+L
Sbjct: 235 ELVRHVRKALSLKL 248


>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
          Length = 173

 Score = 26.6 bits (58), Expect = 3.6
 Identities = 6/62 (9%), Positives = 18/62 (29%)

Query: 270 ERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGYGKMPDYEHIFTDFLLSLEQ 329
           + + + L  +    +   D+     ++D   +         G   +      D  L  + 
Sbjct: 18  DFIGKTLGAKADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKL 77

Query: 330 SK 331
            +
Sbjct: 78  PE 79


>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast
           (Hansenula polymorpha) [TaxId: 4905]}
          Length = 436

 Score = 26.0 bits (57), Expect = 6.7
 Identities = 5/25 (20%), Positives = 12/25 (48%)

Query: 276 LRHRLGLRLFNIDMIREHGMRDVFY 300
             +R G+ L ++       +R +F+
Sbjct: 34  FNYREGIVLSDVSYNDHGNVRPIFH 58


>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493
           orthologue) {Anabaena variabilis [TaxId: 1172]}
          Length = 102

 Score = 24.8 bits (54), Expect = 6.9
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 94  RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRV 136
           + +  EV    P + +    N   MLQ+   +    C G+ R+
Sbjct: 4   KTQLLEVIAALPEELVDQALNYVQMLQNPIQITPGVCGGQARI 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,313,208
Number of extensions: 64208
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 13
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)