Query 019510
Match_columns 340
No_of_seqs 169 out of 1464
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 3.8E-53 8.3E-58 399.6 23.0 205 96-340 29-237 (255)
2 PRK00145 putative inner membra 100.0 5.6E-52 1.2E-56 384.8 22.0 202 105-340 3-206 (223)
3 PRK01622 OxaA-like protein pre 100.0 2.3E-50 4.9E-55 380.9 23.3 203 98-340 32-244 (256)
4 PRK01001 putative inner membra 100.0 2.8E-50 6E-55 418.4 22.5 221 100-340 547-771 (795)
5 PRK01318 membrane protein inse 100.0 3.4E-50 7.4E-55 411.6 22.6 199 99-340 297-501 (521)
6 TIGR03592 yidC_oxa1_cterm memb 100.0 1.1E-49 2.4E-54 358.2 18.6 176 130-340 1-176 (181)
7 PRK02463 OxaA-like protein pre 100.0 8.3E-49 1.8E-53 378.4 23.2 200 100-340 33-244 (307)
8 PRK01315 putative inner membra 100.0 1.6E-47 3.5E-52 371.9 23.0 235 101-340 5-251 (329)
9 PF02096 60KD_IMP: 60Kd inner 100.0 7.1E-48 1.5E-52 349.0 17.8 186 130-340 2-190 (198)
10 PRK02201 putative inner membra 100.0 1.8E-47 3.9E-52 374.7 20.9 216 100-340 100-335 (357)
11 COG0706 YidC Preprotein transl 100.0 1.2E-46 2.6E-51 364.9 20.6 203 100-340 84-290 (314)
12 PRK03449 putative inner membra 100.0 7.9E-46 1.7E-50 357.0 22.2 226 104-340 2-263 (304)
13 PRK00247 putative inner membra 100.0 2E-42 4.2E-47 345.3 23.0 236 104-340 2-266 (429)
14 PRK02654 putative inner membra 100.0 2.9E-37 6.3E-42 297.3 20.0 113 100-219 2-118 (375)
15 KOG1239 Inner membrane protein 99.9 2.2E-23 4.7E-28 206.6 13.1 194 99-330 77-279 (372)
16 KOG1239 Inner membrane protein 98.9 1.2E-09 2.5E-14 109.0 4.2 232 100-337 4-238 (372)
17 COG1422 Predicted membrane pro 96.9 0.0056 1.2E-07 56.3 8.7 91 130-221 45-143 (201)
18 PF01956 DUF106: Integral memb 88.2 1.8 4E-05 38.2 7.1 66 154-219 43-109 (168)
19 PF09973 DUF2208: Predicted me 79.9 6.2 0.00013 37.5 7.0 79 127-220 21-111 (233)
20 TIGR03593 yidC_nterm membrane 79.2 1.5 3.2E-05 43.5 2.7 23 100-122 343-365 (366)
21 PF05280 FlhC: Flagellar trans 75.5 4.9 0.00011 36.5 4.7 38 183-220 38-86 (175)
22 COG1422 Predicted membrane pro 70.7 19 0.00041 33.5 7.4 67 153-222 74-148 (201)
23 COG1377 FlhB Flagellar biosynt 53.1 67 0.0014 32.6 8.2 41 134-179 196-239 (363)
24 COG3105 Uncharacterized protei 51.5 56 0.0012 28.5 6.4 35 133-175 17-51 (138)
25 PF09958 DUF2192: Uncharacteri 51.1 27 0.00058 33.2 4.8 45 159-203 9-53 (231)
26 PF05752 Calici_MSP: Calicivir 50.7 32 0.0007 31.1 5.0 46 150-195 20-65 (167)
27 PRK09108 type III secretion sy 50.1 28 0.0006 35.0 5.0 33 142-179 199-234 (353)
28 KOG1532 GTPase XAB1, interacts 48.4 72 0.0016 31.7 7.3 89 100-200 217-308 (366)
29 PF06570 DUF1129: Protein of u 45.8 2.4E+02 0.0051 25.7 12.3 68 153-220 24-99 (206)
30 KOG4075 Cytochrome c oxidase, 45.6 47 0.001 30.1 5.2 60 159-218 50-123 (167)
31 PHA00327 minor capsid protein 45.5 32 0.0007 31.1 4.1 43 152-197 36-78 (187)
32 cd02434 Nodulin-21_like_3 Nodu 44.8 26 0.00056 32.8 3.7 31 166-196 67-97 (225)
33 PF05190 MutS_IV: MutS family 43.8 35 0.00077 26.2 3.8 36 163-198 2-37 (92)
34 KOG3817 Uncharacterized conser 42.8 91 0.002 31.8 7.2 69 131-199 277-351 (452)
35 COG1333 ResB ResB protein requ 41.9 2.2E+02 0.0047 30.0 10.0 106 130-237 56-182 (478)
36 TIGR00828 EIID-AGA PTS system, 41.2 75 0.0016 30.9 6.3 42 170-219 40-81 (271)
37 PRK09855 PTS system N-acetylga 38.7 76 0.0017 30.7 5.9 29 170-198 42-70 (263)
38 PF00558 Vpu: Vpu protein; In 38.3 13 0.00028 29.8 0.5 54 144-197 20-78 (81)
39 PRK12722 transcriptional activ 38.1 1.7E+02 0.0038 26.9 7.9 38 183-220 38-86 (187)
40 PRK12495 hypothetical protein; 36.0 47 0.001 31.4 3.9 35 166-200 9-45 (226)
41 PRK12860 transcriptional activ 35.9 1.7E+02 0.0036 27.1 7.4 38 183-220 38-86 (189)
42 PF01988 VIT1: VIT family; In 34.7 48 0.001 30.5 3.8 31 166-196 66-96 (213)
43 PF14335 DUF4391: Domain of un 32.7 67 0.0015 29.8 4.4 39 153-191 177-220 (221)
44 PRK11103 PTS system mannose-sp 32.4 1.2E+02 0.0027 29.6 6.3 42 170-219 50-91 (282)
45 cd02433 Nodulin-21_like_2 Nodu 31.6 61 0.0013 30.7 4.0 24 173-196 91-114 (234)
46 PF08412 Ion_trans_N: Ion tran 30.9 32 0.0007 27.2 1.7 37 162-199 5-44 (77)
47 cd02432 Nodulin-21_like_1 Nodu 30.4 61 0.0013 30.3 3.7 22 175-196 81-102 (218)
48 PF05529 Bap31: B-cell recepto 29.8 2.4E+02 0.0052 25.3 7.4 16 132-147 108-123 (192)
49 PF06936 Selenoprotein_S: Sele 29.5 1E+02 0.0022 28.4 5.0 13 131-143 36-48 (190)
50 TIGR02829 spore_III_AE stage I 29.1 6.4E+02 0.014 25.8 13.0 53 271-328 133-187 (381)
51 COG4879 Uncharacterized protei 28.5 1.6E+02 0.0034 27.7 5.9 26 177-202 30-55 (243)
52 PF00153 Mito_carr: Mitochondr 27.9 32 0.00069 26.4 1.2 74 136-220 12-90 (95)
53 PF01956 DUF106: Integral memb 27.1 2.7E+02 0.0059 24.4 7.1 21 200-220 94-114 (168)
54 PF08479 POTRA_2: POTRA domain 25.3 77 0.0017 24.0 2.9 31 165-195 17-53 (76)
55 cd00922 Cyt_c_Oxidase_IV Cytoc 24.8 1.4E+02 0.0031 25.9 4.8 29 162-190 28-57 (136)
56 COG3707 AmiR Response regulato 24.1 2E+02 0.0043 26.7 5.8 48 147-195 114-161 (194)
57 PF14208 DUF4320: Domain of un 23.9 4.4E+02 0.0096 22.3 7.5 59 133-197 4-62 (116)
58 PF10225 DUF2215: Uncharacteri 23.7 1.7E+02 0.0037 27.9 5.5 98 99-197 117-224 (249)
59 PF03613 EIID-AGA: PTS system 22.8 2E+02 0.0044 27.8 5.8 44 163-218 36-79 (264)
60 PF14002 YniB: YniB-like prote 22.6 5.8E+02 0.013 23.1 8.5 75 101-178 30-121 (166)
61 PF05377 FlaC_arch: Flagella a 22.4 2.5E+02 0.0055 20.9 4.9 37 160-197 16-54 (55)
62 KOG4503 Uncharacterized conser 21.4 6.1E+02 0.013 24.0 8.3 25 114-145 82-106 (230)
63 COG5085 Predicted membrane pro 21.4 6.1E+02 0.013 24.0 8.3 25 114-145 82-106 (230)
64 PRK09609 hypothetical protein; 21.2 8.3E+02 0.018 24.4 10.2 22 154-175 108-129 (312)
65 PF09435 DUF2015: Fungal prote 21.2 1.6E+02 0.0034 25.7 4.2 12 185-196 109-120 (128)
66 PRK09174 F0F1 ATP synthase sub 20.6 6.7E+02 0.015 23.1 9.2 20 133-152 61-80 (204)
67 PF00816 Histone_HNS: H-NS his 20.4 1.1E+02 0.0023 24.3 3.0 20 177-196 21-40 (93)
68 PRK12772 bifunctional flagella 20.4 4.1E+02 0.0089 28.7 8.1 13 167-179 480-495 (609)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=3.8e-53 Score=399.61 Aligned_cols=205 Identities=28% Similarity=0.645 Sum_probs=183.6
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh
Q 019510 96 ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA 175 (340)
Q Consensus 96 ~~~~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk 175 (340)
+.+.+|.|+++|++|++++++++|+.+ | .|||+||+++|+++|++++|++++|+|+++||+++|||+++|||||+
T Consensus 29 ~~~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk 103 (255)
T PRK02944 29 TPKSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYS 103 (255)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHc
Confidence 346678888999999999999999875 2 47999999999999999999999999999999999999999999999
Q ss_pred hC----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCc
Q 019510 176 GN----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGI 251 (340)
Q Consensus 176 ~d----~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~ 251 (340)
+| ++|+|+|+++||||||+||++||+|+|+|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 104 ~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-dLs~~D----------- 169 (255)
T PRK02944 104 SKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-DLGQAD----------- 169 (255)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-ccCcch-----------
Confidence 74 56789999999999999999999999999999999999999885 4778999999 999886
Q ss_pred cccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 019510 252 SWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLV 331 (340)
Q Consensus 252 ~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~t 331 (340)
||++||++++++++++++....... ..+.+++.|++++|+++++|+.++|+|+.+||++
T Consensus 170 -------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~ 228 (255)
T PRK02944 170 -------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVV 228 (255)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887543211 1233567789999999999999999999999999
Q ss_pred hhhhhhccC
Q 019510 332 SHINFTKSS 340 (340)
Q Consensus 332 sni~sl~qs 340 (340)
||+++++|+
T Consensus 229 s~~~~i~Q~ 237 (255)
T PRK02944 229 GNIFMIAQT 237 (255)
T ss_pred HHHHHHHHH
Confidence 999999984
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.6e-52 Score=384.76 Aligned_cols=202 Identities=31% Similarity=0.604 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHH
Q 019510 105 GFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQ 182 (340)
Q Consensus 105 ~~i~~p~~~vL~~l~~~l~~~g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q 182 (340)
.+|.++++.+++++|+.+..++ .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|++|+|
T Consensus 3 ~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~ 82 (223)
T PRK00145 3 RYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQ 82 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHH
Confidence 4667777888888887764321 24679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccccCCCC
Q 019510 183 LETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHP 262 (340)
Q Consensus 183 ~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~ 262 (340)
+|+++||||||+||++||+|+++|+|||+++|+++|+++ ++.++||+|++||+.+|
T Consensus 83 ~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~D---------------------- 138 (223)
T PRK00145 83 QEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKPD---------------------- 138 (223)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCcc----------------------
Confidence 999999999999999999999999999999999999985 47889999999999887
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510 263 PLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 263 ~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs 340 (340)
||++||+++++++|++++.+.+.. .+..+.+|.|++++|+++++++.++|+|+++||++||+|+++|+
T Consensus 139 --------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~ 206 (223)
T PRK00145 139 --------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQT 206 (223)
T ss_pred --------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998865432 23334678889999999999999999999999999999999985
No 3
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2.3e-50 Score=380.95 Aligned_cols=203 Identities=26% Similarity=0.520 Sum_probs=180.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHH
Q 019510 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (340)
Q Consensus 98 ~~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~ks----s~km~~lqPel~~Iq~k 173 (340)
+.+|+|.+++++|+.++++++|+++ | .+||+||+++|+++|++++|++++|+|+ ++||+++|||+++||||
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 4678888999999999999999976 3 4699999999999999999999999999 89999999999999999
Q ss_pred hhh--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhc
Q 019510 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (340)
Q Consensus 174 yk~--d~e---k~q~E~~~LyKk~gvnPl~-gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~ 247 (340)
||+ |++ ++|+|++++|||||+||++ ||+|+++|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 987 543 5789999999999999999 99999999999999999999974 5889999999 898764
Q ss_pred CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019510 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (340)
Q Consensus 248 g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~L 327 (340)
++||++++++++++++++.+...+.+.++.+|.|++++|+++++++.++|+|+++
T Consensus 177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL 231 (256)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999866433222334567888899999999999999999999
Q ss_pred HHhhhhhhhhccC
Q 019510 328 YWLVSHINFTKSS 340 (340)
Q Consensus 328 YW~tsni~sl~qs 340 (340)
||++||+++++|+
T Consensus 232 YW~~snl~si~Q~ 244 (256)
T PRK01622 232 YWITGGLFLMGQT 244 (256)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 4
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.8e-50 Score=418.44 Aligned_cols=221 Identities=32% Similarity=0.584 Sum_probs=184.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHH
Q 019510 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~e 179 (340)
.+||+++|+.|+.+++.++.+.++. +..|||+|||++|++||++++|++++|+|+++||+++||||++||||||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~--l~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKF--LTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 4699999999987777555444432 22379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCchhHhhhhcCCCccccccc
Q 019510 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF 257 (340)
Q Consensus 180 k~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl--W~~dLt~pd~i~~~~~g~~~~wl~p~ 257 (340)
|+|+|+|+|||||||||++||+|+|+|+||||++|++++++. .+...+|+ |++||+.+|++ ++|..|.
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLSapDpl--------f~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLTAPDVL--------FSWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhccCCCcc--------ccccccc
Confidence 999999999999999999999999999999999999999875 35677887 99999999853 2232221
Q ss_pred cCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhh
Q 019510 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHIN 335 (340)
Q Consensus 258 ~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~--~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~ 335 (340)
|-..+++.+||++++++++++++++.... ..++.+++++.|+++||+|+++++.++|+||++||++||++
T Consensus 695 --------~FiGd~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~ 766 (795)
T PRK01001 695 --------WFIGNEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLL 766 (795)
T ss_pred --------cccccchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00113678999999999999999864321 11223445667778999999999999999999999999999
Q ss_pred hhccC
Q 019510 336 FTKSS 340 (340)
Q Consensus 336 sl~qs 340 (340)
+++|.
T Consensus 767 SI~QQ 771 (795)
T PRK01001 767 GVIQQ 771 (795)
T ss_pred HHHHH
Confidence 99983
No 5
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=3.4e-50 Score=411.59 Aligned_cols=199 Identities=38% Similarity=0.760 Sum_probs=181.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCH
Q 019510 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178 (340)
Q Consensus 99 ~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ 178 (340)
-++||+.+++.|+.++|+++|..+ | |||+|||++|+++|++++|++++|+|+++||+++||||++||||||+|+
T Consensus 297 ~~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~ 370 (521)
T PRK01318 297 VDYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDP 370 (521)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhH
Confidence 469999999999999999999864 2 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhHhhhhcCCCccccccc
Q 019510 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (340)
Q Consensus 179 ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl-W~~dLt~pd~i~~~~~g~~~~wl~p~ 257 (340)
+|+|+|+++|||||||||++||+|+|+|+||||++|++++++.+ +..++|+ |++||+.+|
T Consensus 371 ~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D----------------- 431 (521)
T PRK01318 371 QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD----------------- 431 (521)
T ss_pred HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc-----------------
Confidence 99999999999999999999999999999999999999998753 7788998 999999987
Q ss_pred cCCCCCCCcchhhHHHHH-----HHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 019510 258 VDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVS 332 (340)
Q Consensus 258 ~~~~~~~g~~~~~py~IL-----PIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~ts 332 (340)
||++| |+++++++|++++++.++ .+++| +.+|++||+++++++.++|+||++||++|
T Consensus 432 -------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~s 493 (521)
T PRK01318 432 -------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVN 493 (521)
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677 999999999999987543 25543 34566799999999999999999999999
Q ss_pred hhhhhccC
Q 019510 333 HINFTKSS 340 (340)
Q Consensus 333 ni~sl~qs 340 (340)
|+++++|.
T Consensus 494 n~~si~Q~ 501 (521)
T PRK01318 494 NLLTIIQQ 501 (521)
T ss_pred HHHHHHHH
Confidence 99999983
No 6
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=1.1e-49 Score=358.21 Aligned_cols=176 Identities=41% Similarity=0.779 Sum_probs=164.0
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 019510 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (340)
Q Consensus 130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPI 209 (340)
|||+||+++|+++|++++|++++|+|+++||+++|||++++|||||+|++|+++|++++|||||+||++||+|+++|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHh
Q 019510 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 289 (340)
Q Consensus 210 fi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i 289 (340)
|+++|+++|++. ++.++||+|++||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999974 58899999999999887 8999999999999999998
Q ss_pred cCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510 290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 290 ~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs 340 (340)
+.+..+ ++ +++|.|++++|+++++++.++|+|+++||++||+|+++|+
T Consensus 129 ~~~~~~-~~--~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~ 176 (181)
T TIGR03592 129 SPSGPP-DP--AQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQ 176 (181)
T ss_pred cCCCCC-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655332 22 3567888999999999999999999999999999999984
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=8.3e-49 Score=378.37 Aligned_cols=200 Identities=28% Similarity=0.494 Sum_probs=174.6
Q ss_pred CCcc-hHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHHh
Q 019510 100 NGGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY 174 (340)
Q Consensus 100 ~ggw-~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~ks----s~km~~lqPel~~Iq~ky 174 (340)
.+|| ++++++|+.++++++|+.+ | .+||+|||++|++||++++|++++|+++ ++||+++|||+++|||||
T Consensus 33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky 107 (307)
T PRK02463 33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL 107 (307)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 3566 4799999999999999865 3 4699999999999999999999988865 689999999999999999
Q ss_pred hhC--H---HHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhc
Q 019510 175 AGN--Q---ERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (340)
Q Consensus 175 k~d--~---ek~q~E~~~LyKk~gvnPl~--gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~ 247 (340)
|++ + +++|+|++++|||||+||++ ||+|+|+|+|||+++|+++++. +++.+++|+|+ ||+.|
T Consensus 108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p-------- 176 (307)
T PRK02463 108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSP-------- 176 (307)
T ss_pred hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCch--------
Confidence 862 2 35689999999999999998 8999999999999999999975 57889999999 88754
Q ss_pred CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019510 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (340)
Q Consensus 248 g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~L 327 (340)
+++||++++++++++++++.... +++..++||.|+++||+|+++|+.++|+||++
T Consensus 177 ------------------------~~iLpii~~v~~~~q~~~~~~~~-~~~q~~~mk~m~~~~Pim~~~~~~~~PagL~l 231 (307)
T PRK02463 177 ------------------------SLVLTAIIGVLYFFQSWLSMMGV-PEEQREQMKAMMYMMPIMMVVFSFSSPAGVGL 231 (307)
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988754332 23334567889999999999999999999999
Q ss_pred HHhhhhhhhhccC
Q 019510 328 YWLVSHINFTKSS 340 (340)
Q Consensus 328 YW~tsni~sl~qs 340 (340)
||++||+|+++|+
T Consensus 232 YW~~snlfsi~Q~ 244 (307)
T PRK02463 232 YWLVGGFFSIIQQ 244 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999984
No 8
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.6e-47 Score=371.92 Aligned_cols=235 Identities=25% Similarity=0.429 Sum_probs=174.6
Q ss_pred CcchHHHHHHHHHHHHH----HHHhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHH
Q 019510 101 GGWFGFISEAMEFVLKI----LKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (340)
Q Consensus 101 ggw~~~i~~p~~~vL~~----l~~~l~~~-g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~k 173 (340)
++||++|++|++|+++. +|+.++.+ | .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||||
T Consensus 5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k 84 (329)
T PRK01315 5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 67999999998888844 46655422 2 23579999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccc
Q 019510 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (340)
Q Consensus 174 yk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~w 253 (340)
||+|++++++|+++||||||+||++||+|+|+|+|||+++|+++|++++.+ ..-.+|.+++...- ..+...|.+++.
T Consensus 85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~s~-~~~~~fg~~L~~ 161 (329)
T PRK01315 85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLESF-RHAHIFGAPLAA 161 (329)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHHhh-hccccccccccc
Confidence 999999999999999999999999999999999999999999999875321 11112222222100 000000111110
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019510 254 LLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY 328 (340)
Q Consensus 254 l~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i-~~----~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LY 328 (340)
.+ .....+..+.....+++||+++++++|++++. +. +.+.++++.+++|.|+++||+|+++++.++|+||++|
T Consensus 162 ~f--~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LY 239 (329)
T PRK01315 162 TF--LQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFY 239 (329)
T ss_pred cc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000111112235789999999999998753 22 2223356667788899999999999999999999999
Q ss_pred HhhhhhhhhccC
Q 019510 329 WLVSHINFTKSS 340 (340)
Q Consensus 329 W~tsni~sl~qs 340 (340)
|++||+|+++|+
T Consensus 240 W~~snl~si~Qq 251 (329)
T PRK01315 240 WLTSNVWTMGQQ 251 (329)
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 9
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=7.1e-48 Score=349.03 Aligned_cols=186 Identities=38% Similarity=0.727 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 019510 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (340)
Q Consensus 130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPI 209 (340)
|||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++|||||+||+++|+|+++|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-hccccCccccccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhH
Q 019510 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME 288 (340)
Q Consensus 210 fi~ly~~Lr~m~~-~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~ 288 (340)
|+++|+++|++++ +++.++||+|++||+.+|+. ...||++||++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 67889999999999999831 113899999999999999999
Q ss_pred hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510 289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 289 i~~~--~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs 340 (340)
++.+ ...+++.++.+|.|++++|+++++++.++|+|+.+||++||+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~ 190 (198)
T PF02096_consen 137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQT 190 (198)
T ss_pred HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8643 222345566788899999999999999999999999999999999984
No 10
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.8e-47 Score=374.73 Aligned_cols=216 Identities=19% Similarity=0.372 Sum_probs=177.4
Q ss_pred CCc-chHHHHHHHHHHHHHHH--HhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh
Q 019510 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (340)
Q Consensus 100 ~gg-w~~~i~~p~~~vL~~l~--~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~ 176 (340)
++| |++++++|+.++++++| ..+. ...+++||+||+++|+++|++++|++++|+++++||+++|||++|||||||+
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 455 67899999999999996 2221 1234679999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCC
Q 019510 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (340)
Q Consensus 177 d------~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~ 250 (340)
| ++++|+|+++||||||+||++||+|+|+|+|||+++|+++|.+. ++....|+|+ ||+.+|...
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi-dLs~~~~~~------- 248 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI-DLSATSWQE------- 248 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc-ccCCCChhh-------
Confidence 6 67899999999999999999999999999999999999999874 4778899999 999876210
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcC----C----CC-C--CCHHhHHHHHHHHHHHHHHHHHHh
Q 019510 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----PQ-T--DDPAQKNTLLVFKFLPLMIGYFSL 319 (340)
Q Consensus 251 ~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~----~----~~-~--~~~~q~~~k~m~~~mPlm~~~f~~ 319 (340)
.+ .+..+|+++++++++++++++.+++ + .. . +.++.+.++.|+++||+++++++.
T Consensus 249 ---~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~ 314 (357)
T PRK02201 249 ---IF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV 314 (357)
T ss_pred ---hc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 1112577777888887777765532 1 01 1 122334577899999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhccC
Q 019510 320 SVPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 320 ~~PagL~LYW~tsni~sl~qs 340 (340)
++|+||.+||++||+|+++|+
T Consensus 315 ~~PaGL~LYW~~snl~tI~Qq 335 (357)
T PRK02201 315 IFAAGVQIYWIIGGIWTILQT 335 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999984
No 11
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-46 Score=364.87 Aligned_cols=203 Identities=34% Similarity=0.646 Sum_probs=181.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh-hCH
Q 019510 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ 178 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk-~d~ 178 (340)
+.||+.++..++...++++|.+. |+ |||++|+++|++||++++|++.+|.++++||+++|||++||||||| +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 68999989988999999986653 33 7999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhHhhhhcCCCccccccc
Q 019510 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (340)
Q Consensus 179 ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl-W~~dLt~pd~i~~~~~g~~~~wl~p~ 257 (340)
+++|+|+++|||||||||++||+|+++|+|||+++|+++++.. .+..++|+ |+.|++.+|
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~~~d----------------- 219 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLSLPD----------------- 219 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhcccCCC-----------------
Confidence 9999999999999999999999999999999999999999875 46677777 999999876
Q ss_pred cCCCCCCCcchhhHHH--HHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhh
Q 019510 258 VDGHPPLGWHDTAAYL--VLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHIN 335 (340)
Q Consensus 258 ~~~~~~~g~~~~~py~--ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~ 335 (340)
|++ ++|+++++++|.+++++..... ++..++++.|+++||+++.++++++|+||.+||++||+|
T Consensus 220 -------------p~~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~f 285 (314)
T COG0706 220 -------------PDYILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLF 285 (314)
T ss_pred -------------CchhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Confidence 344 5699999999999998765322 233346678899999999999999999999999999999
Q ss_pred hhccC
Q 019510 336 FTKSS 340 (340)
Q Consensus 336 sl~qs 340 (340)
+++|.
T Consensus 286 si~Qq 290 (314)
T COG0706 286 SILQQ 290 (314)
T ss_pred HHHHH
Confidence 99984
No 12
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=7.9e-46 Score=356.96 Aligned_cols=226 Identities=22% Similarity=0.401 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHH
Q 019510 104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180 (340)
Q Consensus 104 ~~~i~~p~~~vL~~l~~~l~~-~g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek 180 (340)
++++.+|+.++++++|+.++. +| .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|+++
T Consensus 2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~ 81 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK 81 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence 567889999999999987642 22 234799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CccccccCCC
Q 019510 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS 237 (340)
Q Consensus 181 ~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~--~l~t---------------------~gflW~~dLt 237 (340)
+++|+++|||||||||++||+|+|+|+|||+++|+++|++... +..+ ++|+|..
T Consensus 82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~--- 158 (304)
T PRK03449 82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR--- 158 (304)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence 9999999999999999999999999999999999999998541 2111 1233221
Q ss_pred CchhHhhhhcCCCcc-ccc-cc--cCCCCCCC-cchhhHHHHHHHHHHHHHHHHhHhcCC-C---CCCCHHhH-HHHHHH
Q 019510 238 GPTTIAARQSGSGIS-WLL-PF--VDGHPPLG-WHDTAAYLVLPVLLVVSQYASMELMKP-P---QTDDPAQK-NTLLVF 307 (340)
Q Consensus 238 ~pd~i~~~~~g~~~~-wl~-p~--~~~~~~~g-~~~~~py~ILPIL~~~s~~ls~~i~~~-~---~~~~~~q~-~~k~m~ 307 (340)
..|.+++ |.- +. .+..-..+ ++....++++|+++++++|++++++.. . +.+++.+. ++|.|+
T Consensus 159 --------~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~ 230 (304)
T PRK03449 159 --------LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLAL 230 (304)
T ss_pred --------hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHH
Confidence 0111111 110 00 00000000 111123567899999999999887431 1 11233333 457889
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510 308 KFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 308 ~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs 340 (340)
++||+|+++++.++|+|+.+||++||+|+++|.
T Consensus 231 ~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq 263 (304)
T PRK03449 231 WVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQ 263 (304)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999983
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=2e-42 Score=345.32 Aligned_cols=236 Identities=23% Similarity=0.360 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHHHHHHhcc-ccCC--CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhC---
Q 019510 104 FGFISEAMEFVLKILKDGID-AVHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (340)
Q Consensus 104 ~~~i~~p~~~vL~~l~~~l~-~~gl--p~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d--- 177 (340)
+++|++|+.++++++|..++ .+|. +++||++|+++|++||++++|++++|+|+++||+++||++++||+|||++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 46789999999999999876 4564 34599999999999999999999999999999999999999999999974
Q ss_pred --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhHh---hhhcCCC
Q 019510 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIA---ARQSGSG 250 (340)
Q Consensus 178 --~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~--~~l~t~gflW~~dLt~pd~i~---~~~~g~~ 250 (340)
++++++|+++|||||||||++||+|+|+|+|||+++|++|++|+. +|+.+..+.|+--|+..|.-. +.-+|.+
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 356889999999999999999999999999999999999999975 455544444555555444211 1122322
Q ss_pred ccccccccCCCC--CCCcc-hhhHHHHHHHHH--HHHHHHHhHhcCC-----CCCCCH----HhHHHHHHHHHHHHHHHH
Q 019510 251 ISWLLPFVDGHP--PLGWH-DTAAYLVLPVLL--VVSQYASMELMKP-----PQTDDP----AQKNTLLVFKFLPLMIGY 316 (340)
Q Consensus 251 ~~wl~p~~~~~~--~~g~~-~~~py~ILPIL~--~~s~~ls~~i~~~-----~~~~~~----~q~~~k~m~~~mPlm~~~ 316 (340)
++-.+ .+..+. ..|.. ....+++||+++ ++.+++++.++.. ...+++ +++.|+.|++++|+|+++
T Consensus 162 L~~~~-sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPAYV-SMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred ccccc-ccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 22110 000000 01111 112467888544 4445566655321 111223 344566777899999998
Q ss_pred HHhh--hhhHHHHHHhhhhhhhhccC
Q 019510 317 FSLS--VPSGLSIYWLVSHINFTKSS 340 (340)
Q Consensus 317 f~~~--~PagL~LYW~tsni~sl~qs 340 (340)
++++ +|+||.|||++||+|+++|+
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq 266 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQN 266 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHH
Confidence 8876 79999999999999999984
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.9e-37 Score=297.26 Aligned_cols=113 Identities=33% Similarity=0.604 Sum_probs=106.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHH----HHHHHhh
Q 019510 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~----~Iq~kyk 175 (340)
|.||..+..+++..+++++|..+ + |||+||+++|++||++++|++++|+|+++||+.+||||+ +||||||
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 57887777789999999999754 2 799999999999999999999999999999999999985 7999999
Q ss_pred hCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (340)
Q Consensus 176 ~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~ 219 (340)
+|++++|+|+++|||||| ||++||+|+|+|+|||+++|+++|.
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~ 118 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG 118 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999999999997
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-23 Score=206.56 Aligned_cols=194 Identities=20% Similarity=0.352 Sum_probs=165.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh--
Q 019510 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-- 176 (340)
Q Consensus 99 ~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~-- 176 (340)
...+|.. +..+.+.++.+|+.. |+ +||++|+..|+.+|..++|+.++++|+..|++++.||+.++.++.+.
T Consensus 77 ~~~~~~p--~~~lq~~l~~~h~~~---g~--pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~ 149 (372)
T KOG1239|consen 77 ALSSWRP--VATLQNELERLHVYS---GL--PWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAA 149 (372)
T ss_pred HhcccCc--hhHHHHHHHHHHHHh---CC--cchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhh
Confidence 3344443 556888999999875 44 58999999999999999999999999999999999999999998875
Q ss_pred -C---HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhHhhhhcCCC
Q 019510 177 -N---QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (340)
Q Consensus 177 -d---~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~--~~l~t~gflW~~dLt~pd~i~~~~~g~~ 250 (340)
| ....|+|+++++|+||++| +....+++|.|+|++.|.+||.|+. +++.++|++||+||+.+|
T Consensus 150 ~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d---------- 218 (372)
T KOG1239|consen 150 QDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD---------- 218 (372)
T ss_pred ccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC----------
Confidence 1 2356778999999999999 9888888999999999999999985 577788999999999886
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019510 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329 (340)
Q Consensus 251 ~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~-~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW 329 (340)
|++++|+++.+++...+++..+.+. .+.....++.+++++|+.+..++.++|+++++||
T Consensus 219 --------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~yw 278 (372)
T KOG1239|consen 219 --------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYW 278 (372)
T ss_pred --------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhh
Confidence 7899999999999999988654322 1233446778899999999999999999999999
Q ss_pred h
Q 019510 330 L 330 (340)
Q Consensus 330 ~ 330 (340)
+
T Consensus 279 l 279 (372)
T KOG1239|consen 279 L 279 (372)
T ss_pred h
Confidence 8
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-09 Score=108.98 Aligned_cols=232 Identities=24% Similarity=0.265 Sum_probs=197.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHH
Q 019510 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~e 179 (340)
.+.|+..+....+..+..++.....++.+..++.++...|+++++...|+...+..+..-++..+|-...+...+.....
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 67899888888888888888887778888889999999999999999999998999999999999999999999888665
Q ss_pred --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccc
Q 019510 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (340)
Q Consensus 180 --k~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~ 257 (340)
.+|.|+.++|+-.|++.+++|....+-++..+..|++.++ .++...+.++.|++.+..+...++.+.+..+.|..+.
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999997 5566678899999998887777777777788898888
Q ss_pred cCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q 019510 258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINF 336 (340)
Q Consensus 258 ~~~~~~~g~~-~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~s 336 (340)
.+.+.+.||. +...+.+++..+.++.|+.++.|..+..+.+.+ ....+|-+..+.....+.++..||+++++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888888988 888889999999999999999987433222221 4455677777788888999999999887754
Q ss_pred h
Q 019510 337 T 337 (340)
Q Consensus 337 l 337 (340)
-
T Consensus 238 ~ 238 (372)
T KOG1239|consen 238 G 238 (372)
T ss_pred H
Confidence 3
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.87 E-value=0.0056 Score=56.35 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh-----CH---HHHHHHHHHHHHHcCCCCCCCch
Q 019510 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGCL 201 (340)
Q Consensus 130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~-----d~---ek~q~E~~~LyKk~gvnPl~gcL 201 (340)
+.-++|.+..+++=+.+ -+.-+-.....||+++|.+++|.||++++ |. ||+|+|+++...+..-=.--.+-
T Consensus 45 ~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 45 PPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566666666655432 12223334578999999999999998864 43 35555544443322110101234
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 019510 202 PTLATIPVWIGLYQALSNVA 221 (340)
Q Consensus 202 p~LiQiPIfi~ly~~Lr~m~ 221 (340)
|++.++++.|-.|.=++...
T Consensus 124 PM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 124 PMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 78777777777776666543
No 18
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=88.24 E-value=1.8 Score=38.25 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHhccHHHHHHHHHhhh-CHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510 154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (340)
Q Consensus 154 ~kss~km~~lqPel~~Iq~kyk~-d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~ 219 (340)
-+...++++++-+.++++++... ..++.+++.+++.++..--....+-|+++.+-+++.++..++.
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~ 109 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINY 109 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455556666666666664332 2344444444443332111111223444444444444444443
No 19
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=79.95 E-value=6.2 Score=37.50 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHH---Hhh---------hCHHHHHHHHHHHHHHcCC
Q 019510 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ---RYA---------GNQERIQLETSRLYRQAGV 194 (340)
Q Consensus 127 lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~---kyk---------~d~ek~q~E~~~LyKk~gv 194 (340)
.|..|+..+++-.++.=++++-.+.++.+ +-.++.+|+.+ -|+ .| ++.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD-~el~~E~~~~~k~~-- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKD-KELQKEYKKQMKAS-- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhC-HHHHHHHHHHHHHH--
Confidence 45567777777666666666666666655 12223333311 111 13 45667888888776
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhh
Q 019510 195 NPLAGCLPTLATIPVWIGLYQALSNV 220 (340)
Q Consensus 195 nPl~gcLp~LiQiPIfi~ly~~Lr~m 220 (340)
+++ +.-+||++.++..+++.
T Consensus 92 -----~~~-ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 -----MMN-LLILPIYIILFFLLYPY 111 (233)
T ss_pred -----HHH-HHHHHHHHHHHHHHHHh
Confidence 233 44577777777776654
No 20
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=79.18 E-value=1.5 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHhc
Q 019510 100 NGGWFGFISEAMEFVLKILKDGI 122 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l 122 (340)
++||+.+|+.|+.|+|+++|.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999864
No 21
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=75.54 E-value=4.9 Score=36.50 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=24.1
Q ss_pred HHHHHHHHH-cCCCCCCCchHH----------HHHHHHHHHHHHHHHhh
Q 019510 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (340)
Q Consensus 183 ~E~~~LyKk-~gvnPl~gcLp~----------LiQiPIfi~ly~~Lr~m 220 (340)
.++.+|||| +|++|-+|++|. -++.-+|+.+|+.+++.
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~ 86 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKN 86 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhc
Confidence 557899999 899999999884 45777888888888853
No 22
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.72 E-value=19 Score=33.49 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccHHHHHHHH-----Hhh---hCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 019510 153 QVESTLAMQNLQPKIKAIQQ-----RYA---GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (340)
Q Consensus 153 q~kss~km~~lqPel~~Iq~-----kyk---~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~ 222 (340)
-.|-+..|+++|.|.+|.|| +.| +.++++++.+.++.|.. .+|+ ..-..+.+|+|.=+++-++....
T Consensus 74 m~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM--~~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPM--LYISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH--HHHHHHHHHHHHHHHHHHccCcc
Confidence 34556677789999988876 233 34556666666676654 2343 23467799999999999988754
No 23
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.08 E-value=67 Score=32.57 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh---CHH
Q 019510 134 AIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (340)
Q Consensus 134 aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~---d~e 179 (340)
+++++.+++=++=++...++.....||. -+|++++||+ ||+
T Consensus 196 ~~~~~~liia~~D~~~qr~~~~k~lkMt-----KqEVKdE~K~sEGdPe 239 (363)
T COG1377 196 AVLLLLLIVAAFDYFYQRFQYIKKLKMT-----KQEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHhhccCChh
Confidence 4444444444444555556666555553 3677778874 775
No 24
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.49 E-value=56 Score=28.55 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh
Q 019510 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA 175 (340)
Q Consensus 133 ~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk 175 (340)
+.|++-.+++|+ +-.+.|.+ +++|-|+++.|.+..
T Consensus 17 vGi~IG~li~Rl-----t~~~~k~q---~~~q~ELe~~K~~ld 51 (138)
T COG3105 17 VGIIIGALIARL-----TNRKLKQQ---QKLQYELEKVKAQLD 51 (138)
T ss_pred HHHHHHHHHHHH-----cchhhhhH---HHHHHHHHHHHHHHH
Confidence 345555555554 33333333 346667777766543
No 25
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=51.07 E-value=27 Score=33.22 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHH
Q 019510 159 AMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPT 203 (340)
Q Consensus 159 km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~ 203 (340)
|++.+---+.++-++-.-|++++-.++++.|+++|+.|+.|.-|.
T Consensus 9 RI~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 9 RIEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 333333344444444223788888999999999999999997664
No 26
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=50.68 E-value=32 Score=31.09 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCC
Q 019510 150 TKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (340)
Q Consensus 150 ~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvn 195 (340)
+|..+....|+-+.+-|-.+||+++-+.+|+++++.+++-++--+|
T Consensus 20 tIsnIV~qqrqv~~~~~Qn~lqq~w~~kqe~Lq~~~~dls~~La~n 65 (167)
T PF05752_consen 20 TISNIVAQQRQVDQLEKQNQLQQQWMNKQEQLQRRQQDLSRDLAVN 65 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556667777778888999998888889999998888887666
No 27
>PRK09108 type III secretion system protein HrcU; Validated
Probab=50.09 E-value=28 Score=35.01 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh---CHH
Q 019510 142 VKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (340)
Q Consensus 142 VRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~---d~e 179 (340)
+=++=++...++.....||. -+|++++||+ |||
T Consensus 199 ia~~D~~~qr~~~~k~lkMS-----kqEvK~E~K~~EGdP~ 234 (353)
T PRK09108 199 VGAADWKIQRWLFIRDNRMS-----KDEVKREHKESEGDPH 234 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 33444555566666555554 3667777774 765
No 28
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=48.37 E-value=72 Score=31.71 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHhccccCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh-
Q 019510 100 NGGWFGFISEAMEFVLKILKDGIDAVHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp--~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~- 176 (340)
..++++.++.-|.-.|+-+|..+..+|+. -+.|..=.+..+- ..--....+.+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~------------~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD------------ESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57788889999999999999888877643 1245444333221 23345677888888877654333
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCc
Q 019510 177 NQERIQLETSRLYRQAGVNPLAGC 200 (340)
Q Consensus 177 d~ek~q~E~~~LyKk~gvnPl~gc 200 (340)
+.++.++++.+|.|.-+++++++-
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d 308 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKND 308 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCC
Confidence 333445668889999999998543
No 29
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.83 E-value=2.4e+02 Score=25.74 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHhh------hCHHHHHHHHHHHHHHcCCCCC-CC-chHHHHHHHHHHHHHHHHHhh
Q 019510 153 QVESTLAMQNLQPKIKAIQQRYA------GNQERIQLETSRLYRQAGVNPL-AG-CLPTLATIPVWIGLYQALSNV 220 (340)
Q Consensus 153 q~kss~km~~lqPel~~Iq~kyk------~d~ek~q~E~~~LyKk~gvnPl-~g-cLp~LiQiPIfi~ly~~Lr~m 220 (340)
.++......++-|++-|=|++=+ |||++..+|.-+=.++.+-.+. .. +...+-..=+++++|..+...
T Consensus 24 e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi 99 (206)
T PF06570_consen 24 EEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGI 99 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777666421 2777655554332222222221 12 223333334566666666643
No 30
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=45.61 E-value=47 Score=30.06 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=43.1
Q ss_pred HHHhccHHHHHHHHHhhhCHHHHH-HHHHHHHH----------HcCCCCCC---CchHHHHHHHHHHHHHHHHH
Q 019510 159 AMQNLQPKIKAIQQRYAGNQERIQ-LETSRLYR----------QAGVNPLA---GCLPTLATIPVWIGLYQALS 218 (340)
Q Consensus 159 km~~lqPel~~Iq~kyk~d~ek~q-~E~~~LyK----------k~gvnPl~---gcLp~LiQiPIfi~ly~~Lr 218 (340)
+..+..+++++++||-|.|-.++. +|.++||+ +++.|=++ ||...++-+-|+++++.-++
T Consensus 50 ~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 50 RFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 445688999999999998765543 66777885 23334344 45567778888888888887
No 31
>PHA00327 minor capsid protein
Probab=45.48 E-value=32 Score=31.13 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCC
Q 019510 152 KQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPL 197 (340)
Q Consensus 152 kq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl 197 (340)
-++|..+-++++.-+-.+.|||+.+. ..|+++.. +|+.|+||+
T Consensus 36 gaqkqNa~~~~ia~rqmafQErMSnT--A~qR~~eD-mkkAGLNpL 78 (187)
T PHA00327 36 GAQKQNATAKQIARRQMAFQERMSNT--AYQRAMED-MKKAGLNPL 78 (187)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhH--HHHHHHHH-HHHcCccHH
Confidence 45666677777777777788877653 33344433 578999974
No 32
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=44.84 E-value=26 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHcCCCC
Q 019510 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q~E~~~LyKk~gvnP 196 (340)
|+++-+++.++++|+-++|+.++|+++|.++
T Consensus 67 e~~re~~~i~~~pe~E~~el~~iy~~kG~~~ 97 (225)
T cd02434 67 EKKREEWEIENYPEGEKSEMVEIYSLKGLSE 97 (225)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCH
Confidence 3344444455677777788888888777664
No 33
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=43.77 E-value=35 Score=26.18 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCC
Q 019510 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (340)
Q Consensus 163 lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~ 198 (340)
+-|++++++++|++-.+.++++..++-+++|++.++
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 347899999999998888888888898999885543
No 34
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.82 E-value=91 Score=31.81 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHH--HHHhhh--CHH--HHHHHHHHHHHHcCCCCCCC
Q 019510 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQE--RIQLETSRLYRQAGVNPLAG 199 (340)
Q Consensus 131 wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~I--q~kyk~--d~e--k~q~E~~~LyKk~gvnPl~g 199 (340)
...|+|+..++-..+-+|+....+..-+--+..+|.-.++ +|+|+. +.| +.-+|+++.-+|-++++|+-
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkv 351 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKV 351 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence 3456677888888888999876543222222244433333 456654 322 34467888889999998863
No 35
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=41.86 E-value=2.2e+02 Score=30.03 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHH--HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh-----CHHHHHHHHHHHHHHcCCC-------
Q 019510 130 SYGFAIILLTVIVK--VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQERIQLETSRLYRQAGVN------- 195 (340)
Q Consensus 130 ~wg~aIil~TliVR--lil~PL~ikq~kss~km~~lqPel~~Iq~kyk~-----d~ek~q~E~~~LyKk~gvn------- 195 (340)
+||+..++..+.|- ++++|=++.-.|+.+-+...+|+--+-+++.+. ++++......++-|+.|+.
T Consensus 56 SwWfl~iivlL~VSLv~C~lpr~~~~~ra~r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~ 135 (478)
T COG1333 56 SWWFLAIIVLLGVSLVGCSLPRFPALYRALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSV 135 (478)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHhhcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccce
Confidence 57776666666666 577888887777766655566655443333332 3333333333333332221
Q ss_pred -C------CCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCC
Q 019510 196 -P------LAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237 (340)
Q Consensus 196 -P------l~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt 237 (340)
- +.-.-|.+..+-+.+.+--++-++..+|+..+. |++|-.
T Consensus 136 ~i~AeKG~~~r~G~ii~HiaLliil~Gal~~~~~~Gm~~~~--~V~~Ge 182 (478)
T COG1333 136 SIAAEKGRFSRWGPIIFHIALLIILVGALLDFFYEGMVVGE--IVPDGE 182 (478)
T ss_pred eEEeccccccchhhHHHHHHHHHHHHHHHHhhcccceeEeE--EecCCC
Confidence 1 122458888999988888888875445554433 777643
No 36
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=41.20 E-value=75 Score=30.86 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=25.9
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510 170 IQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (340)
Q Consensus 170 Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~ 219 (340)
++|-|++|+|++++.+++=.+=+|++|.- .|+..|+--++.+
T Consensus 40 L~KlY~~d~e~~~~Alkrhl~fFNT~p~~--------~~~I~Gi~~amEE 81 (271)
T TIGR00828 40 IKKLYPDDKAGRSAALKRHLEFFNTHPNL--------VGPIMGVTAAMEE 81 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHHH
Confidence 34467778777766666655568888743 3344555555543
No 37
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=38.66 E-value=76 Score=30.68 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHcCCCCCC
Q 019510 170 IQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (340)
Q Consensus 170 Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~ 198 (340)
++|-|++|+|++++.+++=.+=+|++|.-
T Consensus 42 L~KlY~~~~e~~~~Al~rHl~ffNT~p~~ 70 (263)
T PRK09855 42 LKKIYKDDKPGLSAAMKDNLEFINTHPNL 70 (263)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchh
Confidence 34467788888877777777778999854
No 38
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=38.30 E-value=13 Score=29.83 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=21.8
Q ss_pred HHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhC----HHHHHHHHHHHHHHcCC-CCC
Q 019510 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLETSRLYRQAGV-NPL 197 (340)
Q Consensus 144 lil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d----~ek~q~E~~~LyKk~gv-nPl 197 (340)
++..-+.+..+|..+|++++.-.++.|+++-.+. .....+|.++|-.++|. ||+
T Consensus 20 IvvW~iv~ieYrk~~rqrkId~li~RIreraEDSGnES~Gd~EeeL~~Lv~~~G~~~p~ 78 (81)
T PF00558_consen 20 IVVWTIVYIEYRKIKRQRKIDRLIERIRERAEDSGNESDGDEEEELSALVESMGFDNPM 78 (81)
T ss_dssp HHHHHHH------------CHHHHHHHHCTTTCCHCTTTTCCHH-CHCCHH-GCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcccccCCCCCCCcHHHHHHHHHHHcCCCCcc
Confidence 3334444556777777788888888888876531 01112246667766663 443
No 39
>PRK12722 transcriptional activator FlhC; Provisional
Probab=38.14 E-value=1.7e+02 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=30.2
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHhh
Q 019510 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (340)
Q Consensus 183 ~E~~~LyKk~-gvnPl~gcLp~----------LiQiPIfi~ly~~Lr~m 220 (340)
.++.+||||- |.+|=+|.+|. =++--+|+.+|+.+...
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~~ 86 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLKT 86 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHHc
Confidence 4577899987 99998999882 45777888888888854
No 40
>PRK12495 hypothetical protein; Provisional
Probab=35.98 E-value=47 Score=31.44 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhCHHHH--HHHHHHHHHHcCCCCCCCc
Q 019510 166 KIKAIQQRYAGNQERI--QLETSRLYRQAGVNPLAGC 200 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~--q~E~~~LyKk~gvnPl~gc 200 (340)
|-+||+|||..|++|- -+.|.+|..|...--..-|
T Consensus 9 EREkLREKye~d~~~R~~~~~ma~lL~~gatmsa~hC 45 (226)
T PRK12495 9 EREKLREKYEQDEQKREATERMSELLLQGATMTNAHC 45 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchhhc
Confidence 5578999999876643 2556666666543333345
No 41
>PRK12860 transcriptional activator FlhC; Provisional
Probab=35.87 E-value=1.7e+02 Score=27.09 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=30.6
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHhh
Q 019510 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (340)
Q Consensus 183 ~E~~~LyKk~-gvnPl~gcLp~----------LiQiPIfi~ly~~Lr~m 220 (340)
.++.+||||. |.+|=+|.+|. =++--+|+.+|+.+.+.
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~~ 86 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKNE 86 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHhc
Confidence 5578999987 99998999884 35777889999888753
No 42
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=34.70 E-value=48 Score=30.51 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHcCCCC
Q 019510 166 KIKAIQQRYAGNQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q~E~~~LyKk~gvnP 196 (340)
|+++-+.+..+++|+.++|+.++|++.|+.+
T Consensus 66 e~~re~~e~~~~pe~e~~el~~iy~~~Gl~~ 96 (213)
T PF01988_consen 66 EREREEWELENNPEEEKEELVEIYRAKGLSE 96 (213)
T ss_pred HhHHHHHHHHhChHhHHHHHHHHHHHCCCCH
Confidence 3333444455678877788889998888774
No 43
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=32.66 E-value=67 Score=29.77 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHhhhC-----HHHHHHHHHHHHHH
Q 019510 153 QVESTLAMQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQ 191 (340)
Q Consensus 153 q~kss~km~~lqPel~~Iq~kyk~d-----~ek~q~E~~~LyKk 191 (340)
+.....++.+++-++++++++.+.. +.+++.|.+++.+|
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 4456778888999999999998763 23678888888775
No 44
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=32.36 E-value=1.2e+02 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=26.3
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510 170 IQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (340)
Q Consensus 170 Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~ 219 (340)
++|-|++|+|++++.+++=.+=+|++|.- .|+..|.--++.+
T Consensus 50 LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~--------~~~I~Gi~~amEE 91 (282)
T PRK11103 50 IRRLYPENNEARKQAIKRHLEFFNTHPYV--------AAPILGVTLAMEE 91 (282)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCCchh--------hhHHHHHHHHHHH
Confidence 34467788877766677666668888742 3344555555543
No 45
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.62 E-value=61 Score=30.66 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.2
Q ss_pred HhhhCHHHHHHHHHHHHHHcCCCC
Q 019510 173 RYAGNQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 173 kyk~d~ek~q~E~~~LyKk~gvnP 196 (340)
+.++++++.++|+.++|++.|.++
T Consensus 91 ~i~~~p~~e~~el~~iy~~~G~~~ 114 (234)
T cd02433 91 ELRKHPLEEAAELALIYRAKGLDE 114 (234)
T ss_pred HhhhCcHHHHHHHHHHHHHcCCCH
Confidence 334567777788888888887775
No 46
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=30.88 E-value=32 Score=27.17 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=27.3
Q ss_pred hccHHHHHHHHHhhhCHHHHHHHHHHHHHHcC---CCCCCC
Q 019510 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAG---VNPLAG 199 (340)
Q Consensus 162 ~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~g---vnPl~g 199 (340)
-++|+.++.--++=+.+.+++.|..+. ++.+ |+|.+.
T Consensus 5 ~~~p~~nk~sl~~f~S~~ai~~E~~R~-~~~~~~IIHP~S~ 44 (77)
T PF08412_consen 5 LLQPGDNKFSLRVFGSKKAIEKEKERQ-RSSGPWIIHPFSK 44 (77)
T ss_pred hhccccCHHHHHHHccHHHHHHHHHHH-hcCCCeEEcCCcc
Confidence 478899888777767778888888886 4444 678664
No 47
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=30.39 E-value=61 Score=30.28 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.7
Q ss_pred hhCHHHHHHHHHHHHHHcCCCC
Q 019510 175 AGNQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 175 k~d~ek~q~E~~~LyKk~gvnP 196 (340)
++++++.++|+.++|++.|++|
T Consensus 81 ~~~p~~e~~el~~~~~~~G~~~ 102 (218)
T cd02432 81 AEDPEAELEELADIYEERGLSP 102 (218)
T ss_pred HhCcHHHHHHHHHHHHHcCCCH
Confidence 4467777788888888888775
No 48
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.78 E-value=2.4e+02 Score=25.29 Aligned_cols=16 Identities=44% Similarity=0.721 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 019510 132 GFAIILLTVIVKVATF 147 (340)
Q Consensus 132 g~aIil~TliVRlil~ 147 (340)
|+++.+.-++-|+..+
T Consensus 108 Gf~LfL~l~I~r~~~l 123 (192)
T PF05529_consen 108 GFALFLSLVIRRVHSL 123 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665543
No 49
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=29.49 E-value=1e+02 Score=28.39 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 019510 131 YGFAIILLTVIVK 143 (340)
Q Consensus 131 wg~aIil~TliVR 143 (340)
|||-|++.+|++-
T Consensus 36 yGWyil~~~I~ly 48 (190)
T PF06936_consen 36 YGWYILFGCILLY 48 (190)
T ss_dssp -------------
T ss_pred hCHHHHHHHHHHH
Confidence 4555555444443
No 50
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=29.05 E-value=6.4e+02 Score=25.77 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHh--hhhhHHHHH
Q 019510 271 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL--SVPSGLSIY 328 (340)
Q Consensus 271 py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~--~~PagL~LY 328 (340)
.|.++-.++.-+.+...+... +-.+.....|.-++|+.+...+. ..-+|...|
T Consensus 133 ~Ylvli~i~l~sF~~~~~~a~-----~~I~~m~~FM~al~P~~~~lva~sGg~~SAa~f~ 187 (381)
T TIGR02829 133 CYMVLIIIALKSFHVAMSYAK-----EAIESMVDFMLALLPLLLALLASSGGVTSAAFFD 187 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 566666666666555555432 22233334555578877765543 234444443
No 51
>COG4879 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.47 E-value=1.6e+02 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCchH
Q 019510 177 NQERIQLETSRLYRQAGVNPLAGCLP 202 (340)
Q Consensus 177 d~ek~q~E~~~LyKk~gvnPl~gcLp 202 (340)
.++..-++++..|++.||+|+.|+=+
T Consensus 30 sRe~~ieilk~vY~~~~IkPfrG~n~ 55 (243)
T COG4879 30 SRESLIEILKTVYKERGIKPFRGLNK 55 (243)
T ss_pred hHHHHHHHHHHHHHHcCCCcccCCCc
Confidence 45566677999999999999998533
No 52
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=27.87 E-value=32 Score=26.42 Aligned_cols=74 Identities=22% Similarity=0.357 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCC-CCCchHHHHHHHH----H
Q 019510 136 ILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNP-LAGCLPTLATIPV----W 210 (340)
Q Consensus 136 il~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnP-l~gcLp~LiQiPI----f 210 (340)
.+...+..+++.|+-.--.+ |+ ..+.+.+...+-..+-..++||++|+.- ..|+.+.++.... .
T Consensus 12 ~~ag~~~~~~~~Pld~ik~~----~q-------~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 80 (95)
T PF00153_consen 12 ALAGAISTLVTYPLDTIKTR----MQ-------SESPSGKQPYQGVWQCLRKIYKEEGIRGLYRGFGPSLLRSIPYTAIY 80 (95)
T ss_dssp HHHHHHHHHHCHHHHHHHHH----HH-------CCSCCCCSS-SSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHh----hc-------ccccccccccccccccccccchhhhhccccCChHHHHHHHHHHHHHH
Confidence 34455567788888653222 11 0000000112234566888999998775 4688776664443 4
Q ss_pred HHHHHHHHhh
Q 019510 211 IGLYQALSNV 220 (340)
Q Consensus 211 i~ly~~Lr~m 220 (340)
+++|..+++.
T Consensus 81 ~~~~~~~~~~ 90 (95)
T PF00153_consen 81 FGLYEYLKRL 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 53
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=27.10 E-value=2.7e+02 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHHHhh
Q 019510 200 CLPTLATIPVWIGLYQALSNV 220 (340)
Q Consensus 200 cLp~LiQiPIfi~ly~~Lr~m 220 (340)
..-+++|+|+|.-+++.+...
T Consensus 94 ~~~~v~~i~i~~wi~~~f~g~ 114 (168)
T PF01956_consen 94 FVTMVPQIPIFYWINYFFSGF 114 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 345778999999999888864
No 54
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=25.34 E-value=77 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhh------CHHHHHHHHHHHHHHcCCC
Q 019510 165 PKIKAIQQRYAG------NQERIQLETSRLYRQAGVN 195 (340)
Q Consensus 165 Pel~~Iq~kyk~------d~ek~q~E~~~LyKk~gvn 195 (340)
.+++++-+.|.+ |-+++.+++.+.|+++|.-
T Consensus 17 ~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 17 EELQAILAPYIGRCLTLADLQQLADALTNYYREKGYI 53 (76)
T ss_dssp CHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCce
Confidence 367777777765 3356778999999999964
No 55
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=24.84 E-value=1.4e+02 Score=25.86 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=23.3
Q ss_pred hccHHHHHHHHHhhhCHHHHH-HHHHHHHH
Q 019510 162 NLQPKIKAIQQRYAGNQERIQ-LETSRLYR 190 (340)
Q Consensus 162 ~lqPel~~Iq~kyk~d~ek~q-~E~~~LyK 190 (340)
+..++++++++|.|+|-+++. +|.+++|+
T Consensus 28 e~~~~~~~Lrekek~dW~~LT~~EKkAlY~ 57 (136)
T cd00922 28 ELSAEIKALREKEKGDWKQLTLEEKKALYR 57 (136)
T ss_pred cchHHHHHHHHHhhCCHhhCCHHHHhhHhh
Confidence 677899999999999977764 66777775
No 56
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.05 E-value=2e+02 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=32.4
Q ss_pred hhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCC
Q 019510 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (340)
Q Consensus 147 ~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvn 195 (340)
+|.--..+.....++.++-|++++++|..+. +.+.+..--|+|+||++
T Consensus 114 ~p~L~vA~srf~~~~~L~~el~~~k~~L~~r-K~ierAKglLM~~~g~s 161 (194)
T COG3707 114 LPILDVAVSRFEERRALRRELAKLKDRLEER-KVIERAKGLLMKRRGLS 161 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 3333344566667777888999888887763 34555556688888776
No 57
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=23.86 E-value=4.4e+02 Score=22.26 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCC
Q 019510 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPL 197 (340)
Q Consensus 133 ~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl 197 (340)
.++.++.++++++.+=....| ....+-|+.+.-|+..+=.++..+...+|-+|.|.+|.
T Consensus 4 ~~~~~ial~v~v~~~~i~~~q------l~~~a~e~v~~aE~~Gg~~~e~~~~~~~l~~k~g~~~~ 62 (116)
T PF14208_consen 4 IAMFLIALIVSVFPVFIQKQQ------LNTFAQELVRQAEREGGVTSETVDRIEDLSEKTGLDPM 62 (116)
T ss_pred HHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCCCC
Confidence 456667777776544433333 34455577777777766333444556777888898885
No 58
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=23.74 E-value=1.7e+02 Score=27.85 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=47.7
Q ss_pred cCCcchH-HHHHHHHHHHHHHHHhccccCC-CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHH-hc--cHHHHHH-HH
Q 019510 99 KNGGWFG-FISEAMEFVLKILKDGIDAVHV-PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ-NL--QPKIKAI-QQ 172 (340)
Q Consensus 99 ~~ggw~~-~i~~p~~~vL~~l~~~l~~~gl-p~~wg~aIil~TliVRlil~PL~ikq~kss~km~-~l--qPel~~I-q~ 172 (340)
+-||+-+ ...+.+.|.|..+.-.+-..+. ....+++++++.++.+.+..|........ .|++ .. .|+.+.+ +|
T Consensus 117 ~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l~~~~l~~~~~~~~~~~-~~~~~~~~~p~~rr~Ltee 195 (249)
T PF10225_consen 117 RYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAIILLLLWKSLYYPISWLKRVR-RKYRRRFTSPPKRRLLTEE 195 (249)
T ss_pred ccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhheecCCCcccccccc
Confidence 3455532 2334556666654332211111 11356788888888888888887543322 2222 22 4444444 45
Q ss_pred Hhhh-CHHHHH---HHHHHHHHHcCCCCC
Q 019510 173 RYAG-NQERIQ---LETSRLYRQAGVNPL 197 (340)
Q Consensus 173 kyk~-d~ek~q---~E~~~LyKk~gvnPl 197 (340)
+|++ ..++.+ +|+++.-+.-++|++
T Consensus 196 Ey~~q~~~eT~kaL~eLr~~c~sp~~~~W 224 (249)
T PF10225_consen 196 EYEEQGERETRKALEELREYCNSPDCNSW 224 (249)
T ss_pred chhhcchHhHHHHHHHHHHHhCCCCCCcc
Confidence 5654 222333 444444445555555
No 59
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=22.84 E-value=2e+02 Score=27.77 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 019510 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALS 218 (340)
Q Consensus 163 lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr 218 (340)
+-|-++| -|++ +|++++.+++=.+=+|.+|.- .|+..|+--++.
T Consensus 36 m~P~lkk---lY~~-~e~~~~al~rh~~fFNT~p~~--------~~~I~Gi~~amE 79 (264)
T PF03613_consen 36 MLPALKK---LYKD-KEELKEALKRHMEFFNTEPFL--------GPFILGIVLAME 79 (264)
T ss_pred HHHHHHH---HcCC-HHHHHHHHHHHHHHHCCCChh--------hhHHHHHHHHHH
Confidence 4455554 5666 777777777777778888742 344455555554
No 60
>PF14002 YniB: YniB-like protein
Probab=22.61 E-value=5.8e+02 Score=23.13 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=41.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhccccC-------C--------CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccH
Q 019510 101 GGWFGFISEAMEFVLKILKDGIDAVH-------V--------PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQP 165 (340)
Q Consensus 101 ggw~~~i~~p~~~vL~~l~~~l~~~g-------l--------p~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqP 165 (340)
.|.-..+.+++..+.+.++..+..++ . +.|+.+-+|-..+.+=++ +.....|.+++.+.+++
T Consensus 30 ~ginav~~dfi~~mv~mvrfnTpFLn~FW~nSPvP~~~~~f~~~ni~F~vIy~liFvGlA---L~aSG~rm~rqvk~ire 106 (166)
T PF14002_consen 30 DGINAVMNDFIHVMVEMVRFNTPFLNFFWNNSPVPDFDNGFSGSNIMFWVIYLLIFVGLA---LQASGARMSRQVKFIRE 106 (166)
T ss_pred cchhHHHHHHHHHHHHHHHhCCchhhhhccCCCCCCcccccccccHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Confidence 34444556677777776665544332 1 123444444444444332 33445666677777777
Q ss_pred HHHH--HHHHhhhCH
Q 019510 166 KIKA--IQQRYAGNQ 178 (340)
Q Consensus 166 el~~--Iq~kyk~d~ 178 (340)
.+++ |-|+-||+.
T Consensus 107 ~IEdqlIlE~akG~~ 121 (166)
T PF14002_consen 107 GIEDQLILEQAKGSE 121 (166)
T ss_pred hHHHHHHHHHhcCCc
Confidence 7754 567777753
No 61
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.36 E-value=2.5e+02 Score=20.89 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred HHhccHHHHHHHHHhhhCHHHHHHHHHHHHH--HcCCCCC
Q 019510 160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYR--QAGVNPL 197 (340)
Q Consensus 160 m~~lqPel~~Iq~kyk~d~ek~q~E~~~LyK--k~gvnPl 197 (340)
+..+|-+.++|++...+=. +--++++.||. -.|+||+
T Consensus 16 i~tvk~en~~i~~~ve~i~-envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIE-ENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCC
Confidence 4445555555554322211 11156777886 5689986
No 62
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=21.45 E-value=6.1e+02 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=12.1
Q ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHHH
Q 019510 114 VLKILKDGIDAVHVPYSYGFAIILLTVIVKVA 145 (340)
Q Consensus 114 vL~~l~~~l~~~glp~~wg~aIil~TliVRli 145 (340)
+..+|+.+++ .-.+-+++.++++.+
T Consensus 82 l~gYLQLflN-------aiv~~iilyf~~kfi 106 (230)
T KOG4503|consen 82 LIGYLQLFLN-------AIVIGIILYFVVKFI 106 (230)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4555555442 333444555555543
No 63
>COG5085 Predicted membrane protein [Function unknown]
Probab=21.45 E-value=6.1e+02 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=12.1
Q ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHHH
Q 019510 114 VLKILKDGIDAVHVPYSYGFAIILLTVIVKVA 145 (340)
Q Consensus 114 vL~~l~~~l~~~glp~~wg~aIil~TliVRli 145 (340)
+..+|+.+++ .-.+-+++.++++.+
T Consensus 82 l~gYLQLflN-------aiv~~iilyf~~kfi 106 (230)
T COG5085 82 LIGYLQLFLN-------AIVIGIILYFVVKFI 106 (230)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4555555442 333444555555543
No 64
>PRK09609 hypothetical protein; Provisional
Probab=21.25 E-value=8.3e+02 Score=24.38 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=15.4
Q ss_pred HHHHHHHHhccHHHHHHHHHhh
Q 019510 154 VESTLAMQNLQPKIKAIQQRYA 175 (340)
Q Consensus 154 ~kss~km~~lqPel~~Iq~kyk 175 (340)
.....|.+++.-++++.|++|+
T Consensus 108 f~~~~~~~~~~~~i~~~~~~~~ 129 (312)
T PRK09609 108 FGKESRIKRYDNKIFKQKEQYD 129 (312)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777788888888874
No 65
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=21.24 E-value=1.6e+02 Score=25.68 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=7.3
Q ss_pred HHHHHHHcCCCC
Q 019510 185 TSRLYRQAGVNP 196 (340)
Q Consensus 185 ~~~LyKk~gvnP 196 (340)
+++-++|+||.|
T Consensus 109 ~~~~f~~NgI~p 120 (128)
T PF09435_consen 109 TERRFKKNGIGP 120 (128)
T ss_pred HHHHHHHcCCCC
Confidence 455566666665
No 66
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.59 E-value=6.7e+02 Score=23.07 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhccHH
Q 019510 133 FAIILLTVIVKVATFPLTKK 152 (340)
Q Consensus 133 ~aIil~TliVRlil~PL~ik 152 (340)
++.+++.++++-+++|...+
T Consensus 61 I~FliL~~lL~k~~~~pI~~ 80 (204)
T PRK09174 61 ITFGLFYLFMSRVILPRIGG 80 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666665443
No 67
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=20.38 E-value=1.1e+02 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHcCCCC
Q 019510 177 NQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 177 d~ek~q~E~~~LyKk~gvnP 196 (340)
..++...++.++.++||+++
T Consensus 21 e~~~~~~~i~~~~~~~Gis~ 40 (93)
T PF00816_consen 21 EREEAIAEIRELMAEYGISP 40 (93)
T ss_dssp CCHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHhCCCH
Confidence 34456688999999999885
No 68
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=20.36 E-value=4.1e+02 Score=28.73 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=8.8
Q ss_pred HHHHHHHhhh---CHH
Q 019510 167 IKAIQQRYAG---NQE 179 (340)
Q Consensus 167 l~~Iq~kyk~---d~e 179 (340)
-+|+|++||+ |||
T Consensus 480 kqEvK~E~Ke~EGdP~ 495 (609)
T PRK12772 480 KQEVKEEYKQDEGDPQ 495 (609)
T ss_pred HHHHHHHHHhccCCHH
Confidence 4677777775 775
Done!