Query 019510
Match_columns 340
No_of_seqs 169 out of 1464
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blc_A Inner membrane protein 34.3 1.1 3.7E-05 42.6 -6.3 22 100-121 305-326 (330)
2 1v54_D Cytochrome C oxidase su 32.2 16 0.00053 31.2 1.3 30 161-190 31-61 (147)
3 1e91_A Paired amphipathic heli 28.8 63 0.0022 24.6 4.2 30 166-195 13-44 (85)
4 2y69_D Cytochrome C oxidase su 27.2 21 0.00072 31.1 1.3 29 162-190 54-83 (169)
5 3vou_A ION transport 2 domain 24.3 90 0.0031 25.5 4.7 15 182-196 129-143 (148)
6 1g1e_B SIN3A; four-helix bundl 24.1 74 0.0025 24.4 3.8 27 166-192 16-44 (89)
7 2d9d_A BAG family molecular ch 23.9 52 0.0018 25.5 2.8 33 155-187 14-49 (89)
8 2cr7_A Paired amphipathic heli 21.9 81 0.0028 23.7 3.6 30 166-195 16-47 (80)
9 4fz4_A 0197-18KD, uncharacteri 20.7 1.2E+02 0.0042 25.8 4.8 34 154-192 76-109 (154)
10 2czy_A Paired amphipathic heli 19.3 1.1E+02 0.0037 22.7 3.8 30 166-195 10-41 (77)
No 1
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=34.35 E-value=1.1 Score=42.64 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHh
Q 019510 100 NGGWFGFISEAMEFVLKILKDG 121 (340)
Q Consensus 100 ~ggw~~~i~~p~~~vL~~l~~~ 121 (340)
++||+.+|+.||-|+|+++|+.
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC----
T ss_pred cccCHHHHHHHHHHHHHHhhhh
Confidence 4899999999999999999875
No 2
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=32.18 E-value=16 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=23.7
Q ss_pred HhccHHHHHHHHHhhhCHHHH-HHHHHHHHH
Q 019510 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYR 190 (340)
Q Consensus 161 ~~lqPel~~Iq~kyk~d~ek~-q~E~~~LyK 190 (340)
+++.|++.++++|.|+|-.++ .+|.++||+
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYr 61 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYR 61 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHH
Confidence 356899999999999986654 366777886
No 3
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=28.84 E-value=63 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCC
Q 019510 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q--~E~~~LyKk~gvn 195 (340)
-++++++++.+++++.+ .|+++-||+..++
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 57889999999988654 6788999998876
No 4
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.23 E-value=21 Score=31.10 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=23.1
Q ss_pred hccHHHHHHHHHhhhCHHHH-HHHHHHHHH
Q 019510 162 NLQPKIKAIQQRYAGNQERI-QLETSRLYR 190 (340)
Q Consensus 162 ~lqPel~~Iq~kyk~d~ek~-q~E~~~LyK 190 (340)
++.|++++++||.|+|-.++ .+|.++||+
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYr 83 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYR 83 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHH
Confidence 46899999999999986655 366777876
No 5
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=24.31 E-value=90 Score=25.50 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=8.5
Q ss_pred HHHHHHHHHHcCCCC
Q 019510 182 QLETSRLYRQAGVNP 196 (340)
Q Consensus 182 q~E~~~LyKk~gvnP 196 (340)
.++.++..++++..+
T Consensus 129 l~~i~~~~~~~~~~~ 143 (148)
T 3vou_A 129 LEAIEKKLAEHSRQG 143 (148)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCc
Confidence 345566666776553
No 6
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.13 E-value=74 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHc
Q 019510 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q--~E~~~LyKk~ 192 (340)
-++++++|+.+++++.+ .|+++-||++
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~ 44 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhc
Confidence 56889999999888654 5677777665
No 7
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.94 E-value=52 Score=25.49 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHHHHhccHHHHHHH---HHhhhCHHHHHHHHHH
Q 019510 155 ESTLAMQNLQPKIKAIQ---QRYAGNQERIQLETSR 187 (340)
Q Consensus 155 kss~km~~lqPel~~Iq---~kyk~d~ek~q~E~~~ 187 (340)
.-..|++.+||++.+.+ ++|++.++++|+.+..
T Consensus 14 ~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~ 49 (89)
T 2d9d_A 14 KVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQ 49 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHH
Confidence 34567888888887766 4666544444444433
No 8
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.93 E-value=81 Score=23.68 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCC
Q 019510 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q--~E~~~LyKk~gvn 195 (340)
-++++++++.+++++.. .|+++-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 46788888888877543 5677777776654
No 9
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=20.72 E-value=1.2e+02 Score=25.81 Aligned_cols=34 Identities=12% Similarity=0.399 Sum_probs=27.6
Q ss_pred HHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHc
Q 019510 154 VESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQA 192 (340)
Q Consensus 154 ~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~ 192 (340)
.....||..+--+....++||.+|. |+.+.||+|
T Consensus 76 Fg~h~k~E~~tRqVa~YrkKYp~n~-----eIe~eyk~~ 109 (154)
T 4fz4_A 76 FKYQIKVENYIRQVAELRKKYPGDN-----TIEEEYNAH 109 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCch-----HHHHHHHHH
Confidence 3455788888889999999999984 788888877
No 10
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=19.33 E-value=1.1e+02 Score=22.75 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCC
Q 019510 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q--~E~~~LyKk~gvn 195 (340)
-++++++++.+++++.. .++++-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 56788899988887643 5677777776655
Done!