Query 019510
Match_columns 340
No_of_seqs 169 out of 1464
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 17:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 53.0 7.8 0.00057 31.3 4.8 38 183-220 34-82 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 29.7 7.2 0.00052 31.2 0.8 30 161-190 28-58 (144)
3 d1ryka_ a.60.11.1 (A:) Hypothe 21.9 37 0.0027 23.2 3.5 28 166-193 39-66 (69)
4 d1lvaa3 a.4.5.35 (A:511-574) C 16.5 38 0.0028 22.5 2.4 21 177-197 4-24 (64)
5 d1qopb_ c.79.1.1 (B:) Tryptoph 15.5 57 0.0042 29.0 4.1 33 163-196 20-55 (390)
6 d2f05a1 a.59.1.1 (A:1-85) Sin3 14.3 70 0.0051 22.3 3.5 31 166-196 13-45 (85)
7 d2cvba1 c.47.1.10 (A:2-188) Pr 13.6 48 0.0035 26.1 2.7 35 162-196 49-97 (187)
8 d2e50a1 d.305.1.1 (A:1-222) Pr 13.3 1.1E+02 0.0078 25.1 5.0 25 152-176 27-51 (222)
9 d2hepa1 a.2.21.1 (A:1-42) Hypo 13.1 1E+02 0.0074 19.2 3.5 11 182-192 27-37 (42)
10 d1u5ta1 a.4.5.54 (A:20-164) Va 13.0 1.1E+02 0.0077 23.9 4.5 41 157-198 14-58 (145)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=52.97 E-value=7.8 Score=31.31 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=30.2
Q ss_pred HHHHHHHHH-cCCCCCCCchHH----------HHHHHHHHHHHHHHHhh
Q 019510 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (340)
Q Consensus 183 ~E~~~LyKk-~gvnPl~gcLp~----------LiQiPIfi~ly~~Lr~m 220 (340)
+++.+|||| +|.+|-+|.+|. -++--+|+.+|+-+.+.
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~~ 82 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKT 82 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHhc
Confidence 457899998 889999998873 45777888888887753
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.73 E-value=7.2 Score=31.19 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.4
Q ss_pred HhccHHHHHHHHHhhhCHHHH-HHHHHHHHH
Q 019510 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYR 190 (340)
Q Consensus 161 ~~lqPel~~Iq~kyk~d~ek~-q~E~~~LyK 190 (340)
+++-|++.+++||.|+|-.++ .+|.++||+
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYr 58 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYR 58 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHH
Confidence 567899999999999986655 367788886
No 3
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=21.94 E-value=37 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHHcC
Q 019510 166 KIKAIQQRYAGNQERIQLETSRLYRQAG 193 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q~E~~~LyKk~g 193 (340)
-.-++|++|...+++.+++..++.++|.
T Consensus 39 l~Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 39 LVGKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 3456889999888999999999988875
No 4
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=16.53 E-value=38 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCC
Q 019510 177 NQERIQLETSRLYRQAGVNPL 197 (340)
Q Consensus 177 d~ek~q~E~~~LyKk~gvnPl 197 (340)
|++++.+.+.++|++.|..|-
T Consensus 4 ~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 4 TQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 567788899999999999984
No 5
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=15.54 E-value=57 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHhh---hCHHHHHHHHHHHHHHcCCCC
Q 019510 163 LQPKIKAIQQRYA---GNQERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 163 lqPel~~Iq~kyk---~d~ek~q~E~~~LyKk~gvnP 196 (340)
|.|-++++.+.|. +|+ +.++|..++||.|--+|
T Consensus 20 l~~~~~~l~~~~~~~~~~~-~f~~e~~~~~~~~~grp 55 (390)
T d1qopb_ 20 LMPALNQLEEAFVSAQKDP-EFQAQFADLLKNYAGRP 55 (390)
T ss_dssp GHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHhcCCCC
Confidence 4556666665554 454 56788888998886555
No 6
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.25 E-value=70 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhCHHHHH--HHHHHHHHHcCCCC
Q 019510 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (340)
Q Consensus 166 el~~Iq~kyk~d~ek~q--~E~~~LyKk~gvnP 196 (340)
-++++++++.+++++.+ .+.++-|+++.++.
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 46889999998887654 46788888876653
No 7
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=13.60 E-value=48 Score=26.14 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.3
Q ss_pred hccHHHHHHHHHhhhC--------------HHHHHHHHHHHHHHcCCCC
Q 019510 162 NLQPKIKAIQQRYAGN--------------QERIQLETSRLYRQAGVNP 196 (340)
Q Consensus 162 ~lqPel~~Iq~kyk~d--------------~ek~q~E~~~LyKk~gvnP 196 (340)
.-.|++++++++|+++ .+.-.+++++..+++|++.
T Consensus 49 ~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~ 97 (187)
T d2cvba1 49 GSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFF 97 (187)
T ss_dssp TTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred hhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcc
Confidence 3568999999999852 2233466788888998873
No 8
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.33 E-value=1.1e+02 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhhh
Q 019510 152 KQVESTLAMQNLQPKIKAIQQRYAG 176 (340)
Q Consensus 152 kq~kss~km~~lqPel~~Iq~kyk~ 176 (340)
.+++...+++.+|-++.++++++..
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~~ 51 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQASE 51 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777776654
No 9
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=13.12 E-value=1e+02 Score=19.17 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=7.0
Q ss_pred HHHHHHHHHHc
Q 019510 182 QLETSRLYRQA 192 (340)
Q Consensus 182 q~E~~~LyKk~ 192 (340)
.+|+++|.++|
T Consensus 27 ~~EQ~~LR~eY 37 (42)
T d2hepa1 27 KAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35667776665
No 10
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.00 E-value=1.1e+02 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHHHHhccHHHHHHHHHhhh----CHHHHHHHHHHHHHHcCCCCCC
Q 019510 157 TLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLA 198 (340)
Q Consensus 157 s~km~~lqPel~~Iq~kyk~----d~ek~q~E~~~LyKk~gvnPl~ 198 (340)
+..++.+|-.+++.-+|+++ || +.+.+-+++-..-||.|++
T Consensus 14 ~~QL~vF~~~L~~FA~kH~~eI~~np-~FR~~F~~MC~~iGVDPLa 58 (145)
T d1u5ta1 14 RDQLMVFQERLVEFAKKHNSELQASP-EFRSKFMHMCSSIGIDPLS 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTTCH-HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCH-HHHHHHHHHHHHhCCChhh
Confidence 45666788888888888886 44 5667788888999999965
Done!