Query 019511
Match_columns 340
No_of_seqs 228 out of 1074
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 10:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2605 OTU (ovarian tumor)-li 100.0 1.6E-34 3.6E-39 284.9 10.9 314 2-322 1-344 (371)
2 PF02338 OTU: OTU-like cystein 99.9 2.1E-25 4.5E-30 184.8 8.4 107 204-316 1-121 (121)
3 KOG2606 OTU (ovarian tumor)-li 99.9 2E-23 4.3E-28 199.1 10.0 142 180-324 141-300 (302)
4 KOG3288 OTU-like cysteine prot 99.7 9.1E-18 2E-22 158.0 6.9 134 197-333 109-247 (307)
5 PF10275 Peptidase_C65: Peptid 99.5 4.8E-13 1E-17 125.0 12.3 94 227-321 141-244 (244)
6 KOG3991 Uncharacterized conser 99.3 6.6E-12 1.4E-16 117.1 8.1 94 226-322 157-256 (256)
7 COG5539 Predicted cysteine pro 98.5 1.8E-08 3.8E-13 97.1 -0.3 100 196-297 169-280 (306)
8 COG5539 Predicted cysteine pro 98.5 4.7E-08 1E-12 94.2 1.9 110 205-320 119-230 (306)
9 PF05415 Peptidase_C36: Beet n 77.0 7.1 0.00015 32.5 5.6 64 203-284 3-68 (104)
10 PF05412 Peptidase_C33: Equine 60.6 6.1 0.00013 33.7 2.0 84 203-323 4-87 (108)
11 PRK09784 hypothetical protein; 60.6 4.8 0.0001 39.3 1.5 24 193-216 195-218 (417)
12 PF05381 Peptidase_C21: Tymovi 39.9 1.3E+02 0.0029 25.5 6.8 98 206-327 2-102 (104)
13 TIGR01078 arcA arginine deimin 29.2 76 0.0017 32.6 4.5 72 175-258 35-106 (405)
14 KOG4634 Mitochondrial F1F0-ATP 27.4 54 0.0012 27.7 2.5 23 55-77 53-75 (105)
15 smart00718 DM4_12 DM4/DM12 fam 25.4 1.1E+02 0.0023 25.1 3.9 73 185-269 9-82 (95)
16 PRK10963 hypothetical protein; 24.2 53 0.0011 30.7 2.1 16 230-245 6-21 (223)
17 PRK01388 arginine deiminase; P 23.6 97 0.0021 31.9 4.1 30 175-204 42-71 (406)
18 COG5007 Predicted transcriptio 23.4 55 0.0012 26.6 1.7 46 195-240 13-61 (80)
19 PRK13381 peptidase T; Provisio 21.0 89 0.0019 31.0 3.1 53 157-209 4-57 (404)
No 1
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=284.91 Aligned_cols=314 Identities=31% Similarity=0.374 Sum_probs=241.4
Q ss_pred cccccCCCeeeeeccccCCCCCCC----CCCCCcccc-CCCCCCccccccccccccc-cccccchHHHHHHHHHHHhHHh
Q 019511 2 ITFEQDSDVLQWGLQLFESDPYLN----CGYTNTVTP-DDESYYYGQHFKEDHYETE-SCDVESDELIAHALQEELSQLA 75 (340)
Q Consensus 2 ~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~-~d~~~~~~~~~~~~~~~~~-~~~~~~d~~ia~~~q~e~~~~~ 75 (340)
+.++++|.+++|.|+-+..+.... .|-+..+.+ .+.++....+.+ ++|+.. .-.|.+|++||+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~-~~~~~~r~~~v~~~~~~~~~~~d~~~~~e 79 (371)
T KOG2605|consen 1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGT-DGYNNKRYGEVDRDFMIARGHQDEVLTVE 79 (371)
T ss_pred CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCcccee-ccccCccccchhhhhhhhccccccccccc
Confidence 357889999999999655343333 355566655 455666667777 555554 4589999999999999999999
Q ss_pred hhhhcCCCCCccccccccccccC-CCCCCCCCcC------------CCCCCCccccC--------CCCCCCCCCCCCCCc
Q 019511 76 VSEASESPHETEENLQGPVFQHG-WVNHSVGGYY------------SGQETGQEEAD--------DTQPSSLCSSHEEVS 134 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 134 (340)
.+|.+...+.-.. +++.++ |..++...-+ .|+...+-.+. ...-++.|+-.+..
T Consensus 80 ~~e~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~s- 154 (371)
T KOG2605|consen 80 DAEMAAICQSVLF----KVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPS- 154 (371)
T ss_pred HHHHhhHHhhhhh----hhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhcccccc-
Confidence 9999999876555 455555 3332222111 11222111111 11101111111111
Q ss_pred CCCCCccccccccc-ccccchhhhhhccCCCCCCCCCCCCCCCCCCcHHhHHHHHHHHHhhhCCcEEEEecCCCChHHHH
Q 019511 135 YCGEEWSYPQELTD-EYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRA 213 (340)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~d~~~gkrl~~~~p~p~~p~~ng~iPs~dea~~d~~rL~~rL~~~GL~i~~V~GDGNCLFRA 213 (340)
+......+.+... ....+.++|.+++++.|++.+|.+++.+|+..+...+++++.+++..+|+.+++|.+||||+|||
T Consensus 155 -d~~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra 233 (371)
T KOG2605|consen 155 -DPLRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRA 233 (371)
T ss_pred -ccccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhc
Confidence 1112223333222 12567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHH--HhCCcEEEEEcCCCce
Q 019511 214 LSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAAD--LYGVKIFVITSFKDTC 291 (340)
Q Consensus 214 lS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~--lf~v~I~V~ts~~~t~ 291 (340)
+|+|||++.+.|.++|++++++++++++.|+.|+++++.+|+++|++++.||+|+|+||+|. -+..++.++++.+.++
T Consensus 234 ~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~ 313 (371)
T KOG2605|consen 234 LADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTC 313 (371)
T ss_pred cHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998 6778888888899999
Q ss_pred EEEecCCCCCCCCeEEEEeCCCCeeeeeecC
Q 019511 292 YIEILPNVERSIRVIYLSFWAEVHYNSIYPA 322 (340)
Q Consensus 292 ~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~ 322 (340)
++.+.|....+...+++.||...||+.++..
T Consensus 314 ~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~ 344 (371)
T KOG2605|consen 314 YIQTPPAIEESVKMEKYNFWVEVHYNTARHS 344 (371)
T ss_pred eeccCcccccchhhhhhcccchhhhhhcccc
Confidence 9988887777777899999999999999985
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.92 E-value=2.1e-25 Score=184.83 Aligned_cols=107 Identities=36% Similarity=0.621 Sum_probs=91.8
Q ss_pred cCCCChHHHHHHHHHh----cCchhHHHHHHHHHHHHh-cCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHHHhC
Q 019511 204 QGDGNCQFRALSDQIY----RTAEHHEFVRQQIVAQLK-SNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG 278 (340)
Q Consensus 204 ~GDGNCLFRAlS~qL~----g~q~~H~~LR~~vV~yL~-~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~lf~ 278 (340)
||||||||||||+||+ +++..|..||++|+++|+ +|++.|..|+..+ +|+++|+||+++||+|+|++|+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~ 74 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN 74 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence 7999999999999999 999999999999999999 9999988887544 8999999999999999999999
Q ss_pred CcEEEEEcCCCc--eEEEecCC--CCCCCCeEEEEeCC-----CCee
Q 019511 279 VKIFVITSFKDT--CYIEILPN--VERSIRVIYLSFWA-----EVHY 316 (340)
Q Consensus 279 v~I~V~ts~~~t--~~I~i~P~--~~~~~~~I~Lsy~~-----~~HY 316 (340)
++|+|++..... .++.+.+. .....++|+|+|.. ++||
T Consensus 75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 999999875543 33444331 24567889999998 9998
No 3
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-23 Score=199.14 Aligned_cols=142 Identities=18% Similarity=0.353 Sum_probs=122.0
Q ss_pred cHHhHHHHHHHHHhhhCCcEEEEecCCCChHHHHHHHHHhcC---chhHHHHHHHHHHHHhcCcccccccCC--------
Q 019511 180 DEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRT---AEHHEFVRQQIVAQLKSNPDIYEGYVP-------- 248 (340)
Q Consensus 180 dea~~d~~rL~~rL~~~GL~i~~V~GDGNCLFRAlS~qL~g~---q~~H~~LR~~vV~yL~~n~d~y~~fv~-------- 248 (340)
+...++.+.|.+.|...||...+||.||+|||+||++||.-. .-..+.||..+++||++|.+.|.+|+.
T Consensus 141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~ 220 (302)
T KOG2606|consen 141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL 220 (302)
T ss_pred chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence 344677788999999999999999999999999999999653 256899999999999999999999862
Q ss_pred --CcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCC-----CCeeeeeec
Q 019511 249 --MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWA-----EVHYNSIYP 321 (340)
Q Consensus 249 --~~~~eYl~kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~-----~~HYdSV~~ 321 (340)
.+|+.||+.|+.++.|||++||.|+|.+|++||.||...++. +.+.+...+ .+||.|+|+. |.||||+.+
T Consensus 221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~ 297 (302)
T KOG2606|consen 221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--LEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTP 297 (302)
T ss_pred CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--eeechhhCC-CCCeeeehHHhHHHHHhhhccccc
Confidence 259999999999999999999999999999999999987653 445543333 6899999987 799999988
Q ss_pred CCC
Q 019511 322 AGG 324 (340)
Q Consensus 322 ~~d 324 (340)
...
T Consensus 298 ~~n 300 (302)
T KOG2606|consen 298 LKN 300 (302)
T ss_pred ccc
Confidence 654
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.1e-18 Score=158.02 Aligned_cols=134 Identities=22% Similarity=0.359 Sum_probs=110.7
Q ss_pred CcEEEEecCCCChHHHHHHHHHhcCch-hHHHHHHHHHHHHhcCccccccc-CCCcHHHHHHhhccCCCCCchHHHHHHH
Q 019511 197 DLVEHKVQGDGNCQFRALSDQIYRTAE-HHEFVRQQIVAQLKSNPDIYEGY-VPMAYGDYLEKMSESGEWGDHVTLQAAA 274 (340)
Q Consensus 197 GL~i~~V~GDGNCLFRAlS~qL~g~q~-~H~~LR~~vV~yL~~n~d~y~~f-v~~~~~eYl~kMsk~gtWGg~iELqA~A 274 (340)
-|.++.||.|+.|||+||++.+.+.-. ...+||+.|.+.+.+||+.|+.. ++..-.+||.++.|+..|||.|||.++|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS 188 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILS 188 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeeh
Confidence 355677999999999999999988643 23699999999999999999865 5778899999999999999999999999
Q ss_pred HHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeeecCC---CCCCeeeecc
Q 019511 275 DLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG---GKYPIFVFMD 333 (340)
Q Consensus 275 ~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~---d~~P~~~~~~ 333 (340)
+.|++.|+|++... ..|+-+.........++|.| +|.|||++.... +..|.++||.
T Consensus 189 ~~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~~~~~tifp~ 247 (307)
T KOG3288|consen 189 DYYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPTDVDNTIFPV 247 (307)
T ss_pred hhhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhccCCccCCccccccc
Confidence 99999999998653 33443333444566788989 699999998755 3578888874
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.46 E-value=4.8e-13 Score=125.03 Aligned_cols=94 Identities=31% Similarity=0.420 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCcccccccCC----CcHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCC-----ceEEEec
Q 019511 227 FVRQQIVAQLKSNPDIYEGYVP----MAYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKD-----TCYIEIL 296 (340)
Q Consensus 227 ~LR~~vV~yL~~n~d~y~~fv~----~~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~-----t~~I~i~ 296 (340)
.+|-.+..||+.|++.|.+|+. .++++||+ .+...+.-.||+.|.|||++++++|.|+..+++ .....+.
T Consensus 141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~ 220 (244)
T PF10275_consen 141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP 220 (244)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence 7899999999999999999996 68999997 578888889999999999999999999987754 1222333
Q ss_pred CCCCCCCCeEEEEeCCCCeeeeeec
Q 019511 297 PNVERSIRVIYLSFWAEVHYNSIYP 321 (340)
Q Consensus 297 P~~~~~~~~I~Lsy~~~~HYdSV~~ 321 (340)
|......+.|.|.|. +.|||.++|
T Consensus 221 ~~~~~~~~~i~LLyr-pgHYdIly~ 244 (244)
T PF10275_consen 221 PDNESQEPQITLLYR-PGHYDILYP 244 (244)
T ss_dssp -SSTTSS-SEEEEEE-TBEEEEEEE
T ss_pred CccCCCCCEEEEEEc-CCccccccC
Confidence 333456788999995 679999986
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=6.6e-12 Score=117.15 Aligned_cols=94 Identities=23% Similarity=0.395 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCcccccccCC--CcHHHHHHh-hccCCCCCchHHHHHHHHHhCCcEEEEEcCCCce-EE--EecCCC
Q 019511 226 EFVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEK-MSESGEWGDHVTLQAAADLYGVKIFVITSFKDTC-YI--EILPNV 299 (340)
Q Consensus 226 ~~LR~~vV~yL~~n~d~y~~fv~--~~~~eYl~k-Msk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~-~I--~i~P~~ 299 (340)
+.+|..+..+|++|++.|.+|++ ++.++||.. +....+-.|||+|-||++.+++.|.|...+++.+ .. ..+|
T Consensus 157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp-- 234 (256)
T KOG3991|consen 157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP-- 234 (256)
T ss_pred HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence 57899999999999999999996 589999985 5566777999999999999999999998776533 11 1222
Q ss_pred CCCCCeEEEEeCCCCeeeeeecC
Q 019511 300 ERSIRVIYLSFWAEVHYNSIYPA 322 (340)
Q Consensus 300 ~~~~~~I~Lsy~~~~HYdSV~~~ 322 (340)
....+.|+|.| ...|||.||+.
T Consensus 235 e~s~P~I~LLY-rpGHYdilY~~ 256 (256)
T KOG3991|consen 235 EASAPEIYLLY-RPGHYDILYKK 256 (256)
T ss_pred cccCceEEEEe-cCCccccccCC
Confidence 45677899999 68999999874
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.8e-08 Score=97.12 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=78.2
Q ss_pred CCcEEEEecCCCChHHHHHHHHHhcC-----chhHHHHHHHHHHHHhcCcccccccCC-------CcHHHHHHhhccCCC
Q 019511 196 YDLVEHKVQGDGNCQFRALSDQIYRT-----AEHHEFVRQQIVAQLKSNPDIYEGYVP-------MAYGDYLEKMSESGE 263 (340)
Q Consensus 196 ~GL~i~~V~GDGNCLFRAlS~qL~g~-----q~~H~~LR~~vV~yL~~n~d~y~~fv~-------~~~~eYl~kMsk~gt 263 (340)
.+++-..+.|||+|+|-+||+||.-. -+..+..|-.=..|..++...|.++.- ..|++|++.|..+..
T Consensus 169 ~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~ 248 (306)
T COG5539 169 TWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDAS 248 (306)
T ss_pred HhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccc
Confidence 35555679999999999999998432 123466676667777777777877641 379999999999999
Q ss_pred CCchHHHHHHHHHhCCcEEEEEcCCCceEEEecC
Q 019511 264 WGDHVTLQAAADLYGVKIFVITSFKDTCYIEILP 297 (340)
Q Consensus 264 WGg~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P 297 (340)
||..+|+++||..|++|+.++...+. .|.+.+
T Consensus 249 ~g~~~ei~qLas~lk~~~~~~nT~~~--~ik~n~ 280 (306)
T COG5539 249 DGITIEIQQLASLLKNPHYYTNTASP--SIKCNI 280 (306)
T ss_pred ccchHHHHHHHHHhcCceEEeecCCc--eEEeec
Confidence 99999999999999999999987654 344443
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.7e-08 Score=94.22 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=91.5
Q ss_pred CCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCC-cHHHHHHhhccCCCCC-chHHHHHHHHHhCCcEE
Q 019511 205 GDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPM-AYGDYLEKMSESGEWG-DHVTLQAAADLYGVKIF 282 (340)
Q Consensus 205 GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~-~~~eYl~kMsk~gtWG-g~iELqA~A~lf~v~I~ 282 (340)
.|..|+|+|++..++.. .-.+||..+...+.+||+.|...+.+ +--.|+.++.+...|| |+||+.++++.+++.|+
T Consensus 119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~ 196 (306)
T COG5539 119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH 196 (306)
T ss_pred CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence 57999999999998753 67899999999999999999998754 7889999999999999 99999999999999999
Q ss_pred EEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeee
Q 019511 283 VITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIY 320 (340)
Q Consensus 283 V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~ 320 (340)
++....+.. -++.+ .+....|.+.| .+.|||...
T Consensus 197 ~Vdv~~~~~-dr~~~--~~~~q~~~i~f-~g~hfD~~t 230 (306)
T COG5539 197 VVDVDKDSE-DRYNS--HPYVQRISILF-TGIHFDEET 230 (306)
T ss_pred eeecchhHH-hhccC--Chhhhhhhhhh-cccccchhh
Confidence 998876532 12332 22334577778 589999887
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=76.97 E-value=7.1 Score=32.54 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=43.7
Q ss_pred ecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhc--cCCCCCchHHHHHHHHHhCCc
Q 019511 203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMS--ESGEWGDHVTLQAAADLYGVK 280 (340)
Q Consensus 203 V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMs--k~gtWGg~iELqA~A~lf~v~ 280 (340)
+..|+|||.-|||.+|.-+-+.-..+ |..+.. ..+.|+.+++ ++.+|-|- .++|+.+++.
T Consensus 3 ~sR~NNCLVVAis~~L~~T~e~l~~~-------M~An~~--------~i~~y~~W~r~~~~STW~DC---~mFA~~LkVs 64 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVTLEKLDNL-------MQANVS--------TIKKYHTWLRKKRPSTWDDC---RMFADALKVS 64 (104)
T ss_pred ccCCCCeEeehHHHHhcchHHHHHHH-------HHhhHH--------HHHHHHHHHhcCCCCcHHHH---HHHHHhheeE
Confidence 56799999999999997654332222 222221 2667888664 56789654 4689999999
Q ss_pred EEEE
Q 019511 281 IFVI 284 (340)
Q Consensus 281 I~V~ 284 (340)
|.|=
T Consensus 65 m~vk 68 (104)
T PF05415_consen 65 MQVK 68 (104)
T ss_pred EEEE
Confidence 9874
No 10
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=60.58 E-value=6.1 Score=33.67 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=46.8
Q ss_pred ecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEE
Q 019511 203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIF 282 (340)
Q Consensus 203 V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~lf~v~I~ 282 (340)
-|+||+|.+|+||..+++ |..- .|.. .|-+.-+....|.++-.|.-+=..++.|+-
T Consensus 4 PP~DG~CG~H~i~aI~n~---------------m~~~--~~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat 59 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNH---------------MMGG--EFTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPAT 59 (108)
T ss_pred CCCCCchHHHHHHHHHHH---------------hhcc--CCCc-------cccccCCChHHccChHHHHHHHHHccCcee
Confidence 489999999999987653 1110 0100 112222445678888777655555576665
Q ss_pred EEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeeecCC
Q 019511 283 VITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG 323 (340)
Q Consensus 283 V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~ 323 (340)
+.-. .......|+.-..+.|+..-+..+
T Consensus 60 ~~~~-------------~~Cp~ArYv~~l~~qHW~V~~~~g 87 (108)
T PF05412_consen 60 LDRN-------------GACPHARYVLKLDGQHWEVSVRKG 87 (108)
T ss_pred ccCC-------------CCCCCCEEEEEecCceEEEEEcCC
Confidence 5311 112223344444677887666555
No 11
>PRK09784 hypothetical protein; Provisional
Probab=60.56 E-value=4.8 Score=39.35 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.0
Q ss_pred hhhCCcEEEEecCCCChHHHHHHH
Q 019511 193 LQVYDLVEHKVQGDGNCQFRALSD 216 (340)
Q Consensus 193 L~~~GL~i~~V~GDGNCLFRAlS~ 216 (340)
-+.+||+--+|.|||-||.|||--
T Consensus 195 n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHH
Confidence 357899999999999999999854
No 12
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=39.89 E-value=1.3e+02 Score=25.55 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHhcCch-hHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEEEE
Q 019511 206 DGNCQFRALSDQIYRTAE-HHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVI 284 (340)
Q Consensus 206 DGNCLFRAlS~qL~g~q~-~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~lf~v~I~V~ 284 (340)
.-+||.-|||.|..-.++ -|..|...+=+=+..|++. ++-|- .--.+.|+|-.|+....+.
T Consensus 2 ~~~CLL~A~s~at~~~~~~LW~~L~~~lPDSlL~n~ei----------------~~~GL--STDhltaLa~~~~~~~~~h 63 (104)
T PF05381_consen 2 ALDCLLVAISQATSISPETLWATLCEILPDSLLDNPEI----------------RTLGL--STDHLTALAYRYHFQCTFH 63 (104)
T ss_pred CcceeHHhhhhhhCCCHHHHHHHHHHhCchhhcCchhh----------------hhcCC--cHHHHHHHHHHHheEEEEE
Confidence 358999999999865543 3555555444444444433 22221 1223569999999999999
Q ss_pred EcCCCceEEEecCCCCCCCCeEEEEeCCC--CeeeeeecCCCCCC
Q 019511 285 TSFKDTCYIEILPNVERSIRVIYLSFWAE--VHYNSIYPAGGKYP 327 (340)
Q Consensus 285 ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~--~HYdSV~~~~d~~P 327 (340)
+..+. +.+.. ......+.|.|..+ .||.. +..+..+|
T Consensus 64 s~~~~---~~~Gi--~~as~~~~I~ht~G~p~HFs~-~~~~~~a~ 102 (104)
T PF05381_consen 64 SDHGV---LHYGI--KDASTVFTITHTPGPPGHFSL-RRLGGSAP 102 (104)
T ss_pred cCCce---EEeec--CCCceEEEEEeCCCCCCcccc-cccCCCcC
Confidence 86542 44543 34556677888764 79998 44444444
No 13
>TIGR01078 arcA arginine deiminase. Arginine deiminase is the first enzyme of the arginine deiminase pathway of arginine degradation.
Probab=29.16 E-value=76 Score=32.56 Aligned_cols=72 Identities=15% Similarity=0.328 Sum_probs=47.9
Q ss_pred CCCCCcHHhHHHHHHHHHhhhCCcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHH
Q 019511 175 EIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDY 254 (340)
Q Consensus 175 ~iPs~dea~~d~~rL~~rL~~~GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eY 254 (340)
.+|..+.|+.+|+.+.+.|+..|.++..+.. -++..| .+..+|+.+++........+..-......+|
T Consensus 35 ~i~~~~~a~~EHd~f~~~Lr~~GveV~~l~d-------ll~e~l-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (405)
T TIGR01078 35 DIPWVEDAQKEHDQFANTLRDNGIEVLYLED-------LLAETL-----DLPEAKEKFIDEFLSESEILGLGLKVELRDY 102 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEhHH-------HHHHHh-----CCHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 6899999999999999999999999887542 233333 1337888887777665443322222344555
Q ss_pred HHhh
Q 019511 255 LEKM 258 (340)
Q Consensus 255 l~kM 258 (340)
+..|
T Consensus 103 l~~~ 106 (405)
T TIGR01078 103 LKSL 106 (405)
T ss_pred HHhC
Confidence 5544
No 14
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=27.37 E-value=54 Score=27.74 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=20.6
Q ss_pred ccccchHHHHHHHHHHHhHHhhh
Q 019511 55 CDVESDELIAHALQEELSQLAVS 77 (340)
Q Consensus 55 ~~~~~d~~ia~~~q~e~~~~~~~ 77 (340)
.-||.|.-+-++|+|||-+||..
T Consensus 53 klvds~pe~e~eLk~el~rla~q 75 (105)
T KOG4634|consen 53 KLVDSDPEYEQELKEELFRLAQQ 75 (105)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999754
No 15
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=25.36 E-value=1.1e+02 Score=25.12 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhCCcEEEEecCCC-ChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCC
Q 019511 185 DHQRLLERLQVYDLVEHKVQGDG-NCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGE 263 (340)
Q Consensus 185 d~~rL~~rL~~~GL~i~~V~GDG-NCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gt 263 (340)
=++.|.+.|..+|+ || .|+.|||-..--. ...|.-|=..++..|-+-++.-+. .--.+|.+.++ .|.
T Consensus 9 lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~~-~~~~~Gll~ell~ilftps~~~~~---~~~~~Y~~A~~-~G~ 76 (95)
T smart00718 9 LYEALENLLDQLGF-------NGRACLLRAICESAQK-LDDHRGLLGELLRIVLTPPDELEE---VLDPDYREAYR-AGR 76 (95)
T ss_pred HHHHHHHHHHHcCC-------CchhhHHHHHHHcccc-cccccchHHHHHHHhhcCCcchhh---hchHHHHHHHH-cCC
Confidence 36778888998885 77 9999999887653 333444666677777665521111 12346666553 354
Q ss_pred CCchHH
Q 019511 264 WGDHVT 269 (340)
Q Consensus 264 WGg~iE 269 (340)
-|++++
T Consensus 77 ~g~dC~ 82 (95)
T smart00718 77 AGGDCD 82 (95)
T ss_pred CCCCHH
Confidence 466643
No 16
>PRK10963 hypothetical protein; Provisional
Probab=24.16 E-value=53 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=14.1
Q ss_pred HHHHHHHhcCcccccc
Q 019511 230 QQIVAQLKSNPDIYEG 245 (340)
Q Consensus 230 ~~vV~yL~~n~d~y~~ 245 (340)
+.|++||++||++|..
T Consensus 6 ~~V~~yL~~~PdFf~~ 21 (223)
T PRK10963 6 RAVVDYLLQNPDFFIR 21 (223)
T ss_pred HHHHHHHHHCchHHhh
Confidence 5789999999999865
No 17
>PRK01388 arginine deiminase; Provisional
Probab=23.64 E-value=97 Score=31.88 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCCCcHHhHHHHHHHHHhhhCCcEEEEec
Q 019511 175 EIPSIDEATLDHQRLLERLQVYDLVEHKVQ 204 (340)
Q Consensus 175 ~iPs~dea~~d~~rL~~rL~~~GL~i~~V~ 204 (340)
.+|..+.|+.+|+.+.+.|+..|..+..+.
T Consensus 42 di~~l~~aq~EHd~f~~~Lr~~GveV~~l~ 71 (406)
T PRK01388 42 DVPWVERAQKEHDAFAQTLRDRGVEVLYLE 71 (406)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCCEEEEhH
Confidence 689999999999999999999999988764
No 18
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=23.38 E-value=55 Score=26.63 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=33.3
Q ss_pred hCCcEEEEecCCCChHHH-HHHHHHhcCc--hhHHHHHHHHHHHHhcCc
Q 019511 195 VYDLVEHKVQGDGNCQFR-ALSDQIYRTA--EHHEFVRQQIVAQLKSNP 240 (340)
Q Consensus 195 ~~GL~i~~V~GDGNCLFR-AlS~qL~g~q--~~H~~LR~~vV~yL~~n~ 240 (340)
.+.+...+|.|||+=+|- +|++.+-|-. ..|+.|-.-+.+||.+|.
T Consensus 13 ~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~ 61 (80)
T COG5007 13 ALPLEEVEVEGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNE 61 (80)
T ss_pred cCCccEEEEecCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCc
Confidence 457788999999987664 4677765532 357777777888888764
No 19
>PRK13381 peptidase T; Provisional
Probab=21.03 E-value=89 Score=31.03 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=35.9
Q ss_pred hhhccCCCCCCCCCCC-CCCCCCCcHHhHHHHHHHHHhhhCCcEEEEecCCCCh
Q 019511 157 GKRLNQMVPVPHVPRI-NGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNC 209 (340)
Q Consensus 157 gkrl~~~~p~p~~p~~-ng~iPs~dea~~d~~rL~~rL~~~GL~i~~V~GDGNC 209 (340)
-+|+.+++.+|++... -++||+......-.+.|.++|+.+|+....+.+.||-
T Consensus 4 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nv 57 (404)
T PRK13381 4 TDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIV 57 (404)
T ss_pred HHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEE
Confidence 3577788888877642 3577876544445677889999999954455555543
Done!