Query 019511
Match_columns 340
No_of_seqs 228 out of 1074
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 6.4E-36 2.2E-40 269.6 14.3 135 187-323 47-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 7E-33 2.4E-37 254.0 13.7 132 194-333 16-148 (212)
3 3phx_A RNA-directed RNA polyme 100.0 3.9E-30 1.3E-34 231.7 13.7 124 198-325 31-163 (185)
4 3phu_A RNA-directed RNA polyme 100.0 1.5E-29 5.2E-34 233.4 14.1 124 198-325 31-163 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 4.3E-21 1.5E-25 178.2 13.4 96 226-324 133-233 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 3.3E-19 1.1E-23 165.4 14.2 93 226-321 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.7 1.3E-17 4.3E-22 159.1 14.3 97 226-324 171-276 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 1.6E-17 5.5E-22 164.4 10.8 94 225-321 300-399 (399)
9 3dkb_A Tumor necrosis factor, 98.7 7E-08 2.4E-12 94.5 12.2 127 197-325 111-286 (390)
10 3zrh_A Ubiquitin thioesterase 98.5 4.1E-07 1.4E-11 90.5 10.5 128 197-325 188-352 (454)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=6.4e-36 Score=269.62 Aligned_cols=135 Identities=25% Similarity=0.490 Sum_probs=102.7
Q ss_pred HHHHHHh-hhCCcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCC
Q 019511 187 QRLLERL-QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265 (340)
Q Consensus 187 ~rL~~rL-~~~GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWG 265 (340)
..+.+.| +.+||++++|+|||||||||||+||++++..|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus 47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG 126 (185)
T 3pfy_A 47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 126 (185)
T ss_dssp HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence 3455555 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCcEEEEEcCCCceEEEecCC-CCCCCCeEEEEeCCCCeeeeeecCC
Q 019511 266 DHVTLQAAADLYGVKIFVITSFKDTCYIEILPN-VERSIRVIYLSFWAEVHYNSIYPAG 323 (340)
Q Consensus 266 g~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P~-~~~~~~~I~Lsy~~~~HYdSV~~~~ 323 (340)
|++||+|||++|+++|+|++..... +.+++. .....++|+|+|++++|||||+...
T Consensus 127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 9999999999999999999875432 333332 3456789999999999999998754
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=7e-33 Score=254.03 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=115.6
Q ss_pred hhCCcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCccccc-ccCCCcHHHHHHhhccCCCCCchHHHHH
Q 019511 194 QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYE-GYVPMAYGDYLEKMSESGEWGDHVTLQA 272 (340)
Q Consensus 194 ~~~GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~-~fv~~~~~eYl~kMsk~gtWGg~iELqA 272 (340)
...||.+++|+|||||||||||+|| +++..|..||+.+++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 3458999999999999999999999 9999999999999999999999997 5678999999999999999999999999
Q ss_pred HHHHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCCCCeeeecc
Q 019511 273 AADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMD 333 (340)
Q Consensus 273 ~A~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~~P~~~~~~ 333 (340)
||++|+++|.|++.... ..+.|.+. . ..++|+|+|+ ++|||||++ ..+.++|+.
T Consensus 95 ls~~~~~~I~V~~~~~~-~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~---~~d~~~f~~ 148 (212)
T 3by4_A 95 ISDALAVAIYVVDIDAV-KIEKFNED-K-FDNYILILFN-GIHYDSLTM---NEFKTVFNK 148 (212)
T ss_dssp HHHHHTCEEEEEETTTT-EEEEESTT-T-CSEEEEEEEC-SSCEEEEEE---TTTBCCEET
T ss_pred HHHHHCCCEEEEECCCC-CeEEeCCC-C-CCCeEEEEEc-CCcceEEec---CCCcccCCc
Confidence 99999999999997532 34555543 2 5789999997 899999999 446677764
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=3.9e-30 Score=231.65 Aligned_cols=124 Identities=18% Similarity=0.346 Sum_probs=107.3
Q ss_pred cEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHH
Q 019511 198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ 271 (340)
Q Consensus 198 L~i~~V~GDGNCLFRAlS~qL~g~-q~~-----H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELq 271 (340)
+.+.+|+|||||||||||+||+++ +.. |..||+.+++||++|++. .+++++|++||++|+++|+|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 778889999999999999999998 666 999999999999999999 356899999999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCCCc---eEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCC
Q 019511 272 AAADLYGVKIFVITSFKDT---CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGK 325 (340)
Q Consensus 272 A~A~lf~v~I~V~ts~~~t---~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~ 325 (340)
|+|++|+++|.|++..... ..+.+.+ ....++|+|+|++++|||+|++..+.
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~--~~~~~~I~L~Y~g~~HYdsl~~~~~~ 163 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGD--GDVFTAVNLLHSGQTHFDALRILPQF 163 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESS--CCTTTSEEEEEETTTEEEEEEECGGG
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCC--CCCCCEEEEEECCCcCchhceECCCC
Confidence 9999999999999866543 2345543 23478999999888999999998763
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.96 E-value=1.5e-29 Score=233.39 Aligned_cols=124 Identities=18% Similarity=0.349 Sum_probs=108.8
Q ss_pred cEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHH
Q 019511 198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ 271 (340)
Q Consensus 198 L~i~~V~GDGNCLFRAlS~qL~g~-q~~-----H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELq 271 (340)
+.+.+|+|||||||||||+||+++ +.. |..||+.|++||++|++. .+++++|++||++|+++|+|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 778899999999999999999998 566 999999999999999999 356889999999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCCC--c-eEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCC
Q 019511 272 AAADLYGVKIFVITSFKD--T-CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGK 325 (340)
Q Consensus 272 A~A~lf~v~I~V~ts~~~--t-~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~ 325 (340)
|+|++|+++|.|++.... . ..+.|.+. ...++|+|+|++++|||+|++..+.
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~ 163 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF 163 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTT
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCC
Confidence 999999999999986654 2 24455443 3478999999988999999998874
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.85 E-value=4.3e-21 Score=178.19 Aligned_cols=96 Identities=19% Similarity=0.362 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCceEEE--ecCCCC
Q 019511 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIE--ILPNVE 300 (340)
Q Consensus 226 ~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~~I~--i~P~~~ 300 (340)
..+|..+..||++|++.|.+|+++ ++++||+ .+...++|||+++|+|||+.++++|.|+..+++...+. ..| +
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~--~ 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP--E 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC--C
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCC--C
Confidence 468999999999999999999965 8999999 79999999999999999999999999998766542121 122 2
Q ss_pred CCCCeEEEEeCCCCeeeeeecCCC
Q 019511 301 RSIRVIYLSFWAEVHYNSIYPAGG 324 (340)
Q Consensus 301 ~~~~~I~Lsy~~~~HYdSV~~~~d 324 (340)
...+.|+|+|. +.|||+|++.+.
T Consensus 211 ~~~~~I~LlY~-pgHYdily~~~~ 233 (234)
T 1tff_A 211 AATPSVYLLYK-TSHYNILYAADK 233 (234)
T ss_dssp CSSCSEEEEEE-TTEEEEEEECCC
T ss_pred CCCCeEEEEEC-CCCceecccCCC
Confidence 34677999997 569999999753
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.80 E-value=3.3e-19 Score=165.38 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc---eEEEecCCC
Q 019511 226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT---CYIEILPNV 299 (340)
Q Consensus 226 ~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t---~~I~i~P~~ 299 (340)
..+|..++.||++|++.|.+|+++ ++++||+ .+..+++|||+++|+|||++|+++|.|+..++.. ......|.
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~- 214 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE- 214 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence 478999999999999999999975 8999998 5999999999999999999999999999876543 12222333
Q ss_pred CCCCCeEEEEeCCCCeeeeeec
Q 019511 300 ERSIRVIYLSFWAEVHYNSIYP 321 (340)
Q Consensus 300 ~~~~~~I~Lsy~~~~HYdSV~~ 321 (340)
...++|+|+|. +.|||+|+|
T Consensus 215 -~~~p~I~LlY~-pgHYdiLy~ 234 (234)
T 2zfy_A 215 -GSEPKVYLLYR-PGHYDILYK 234 (234)
T ss_dssp -TCCCSEEEEEE-TTEEEEEEC
T ss_pred -CCCCeEEEEEC-CCCcccCCC
Confidence 34678999997 469999986
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.74 E-value=1.3e-17 Score=159.06 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCcccccccCC--CcHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc----eEEE-ecC
Q 019511 226 EFVRQQIVAQLKSNPDIYEGYVP--MAYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT----CYIE-ILP 297 (340)
Q Consensus 226 ~~LR~~vV~yL~~n~d~y~~fv~--~~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t----~~I~-i~P 297 (340)
..||..+..||++|++.|.+|+. +++++||+ .+...++||||++|+|||++|+++|.|+..+++. .... | |
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p 249 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P 249 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence 57899999999999999999996 48999999 8999999999999999999999999999876531 1223 4 6
Q ss_pred CCCC-CCCeEEEEeCCCCeeeeeecCCC
Q 019511 298 NVER-SIRVIYLSFWAEVHYNSIYPAGG 324 (340)
Q Consensus 298 ~~~~-~~~~I~Lsy~~~~HYdSV~~~~d 324 (340)
.... ..+.|+|.| .+.|||.||+..-
T Consensus 250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p 276 (284)
T 4dhi_B 250 SDDQQIAPEITLLY-RPGHYDVIYKKDS 276 (284)
T ss_dssp CCCSCCCCSEEEEE-ETTEEEEEEECC-
T ss_pred CCCCCCCCEEEEee-cCCCccccccCCC
Confidence 5432 346799999 5789999999863
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.71 E-value=1.6e-17 Score=164.37 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc-eEE--EecCC
Q 019511 225 HEFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT-CYI--EILPN 298 (340)
Q Consensus 225 H~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t-~~I--~i~P~ 298 (340)
...||..+..||++|++.|.+|+++ ++++||+ .+...++||||++|+|||+.|+++|.|+..++.. ..+ ...|.
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~ 379 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 379 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence 3468999999999999999999965 7999999 8999999999999999999999999999765521 111 12333
Q ss_pred CCCCCCeEEEEeCCCCeeeeeec
Q 019511 299 VERSIRVIYLSFWAEVHYNSIYP 321 (340)
Q Consensus 299 ~~~~~~~I~Lsy~~~~HYdSV~~ 321 (340)
...+.|+|.| ...|||.||+
T Consensus 380 --~~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 --GSEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp --TCCCCCEEEE-ETBEEEEEEC
T ss_pred --CCCCEEEEEE-cCCccccCCC
Confidence 3467899999 5789999986
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.72 E-value=7e-08 Score=94.52 Aligned_cols=127 Identities=20% Similarity=0.372 Sum_probs=88.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcc-cc-----------cccC-------C----CcHHH
Q 019511 197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD-IY-----------EGYV-------P----MAYGD 253 (340)
Q Consensus 197 GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d-~y-----------~~fv-------~----~~~~e 253 (340)
.|....+.||||||.+|+|.+++|-.+....+|+.+.+-|++... .| ..|. . .+|+.
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~ 190 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDN 190 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHH
T ss_pred ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHH
Confidence 366778999999999999999999999999999999999998642 11 1222 1 24444
Q ss_pred HHHhhccCCC--------C--CchHHHHHHHHHhCCcEEEEEcC--C----CceE--E----EecC----CCCCCCCeEE
Q 019511 254 YLEKMSESGE--------W--GDHVTLQAAADLYGVKIFVITSF--K----DTCY--I----EILP----NVERSIRVIY 307 (340)
Q Consensus 254 Yl~kMsk~gt--------W--Gg~iELqA~A~lf~v~I~V~ts~--~----~t~~--I----~i~P----~~~~~~~~I~ 307 (340)
-+ +|+.+.. + =-++-+.++|++++|||+|+... + +..+ + .+.| ...+.+.||.
T Consensus 191 Iv-~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~ 269 (390)
T 3dkb_A 191 LI-KMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV 269 (390)
T ss_dssp HH-HHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred HH-HHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence 34 3443321 1 13677899999999999999532 1 1111 1 1233 3456678999
Q ss_pred EEeCCCCeeeeeecCCCC
Q 019511 308 LSFWAEVHYNSIYPAGGK 325 (340)
Q Consensus 308 Lsy~~~~HYdSV~~~~d~ 325 (340)
|+|. ..||.+|++.++.
T Consensus 270 LgY~-s~HFsaLV~me~~ 286 (390)
T 3dkb_A 270 LGYD-SHHFVPLVTLKDS 286 (390)
T ss_dssp EEEC-SSCEEEEEEBCSS
T ss_pred EEec-cCceeeeeecccC
Confidence 9996 5899999998753
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.50 E-value=4.1e-07 Score=90.49 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=92.4
Q ss_pred CcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCccccc----------------ccC--C----CcHHHH
Q 019511 197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYE----------------GYV--P----MAYGDY 254 (340)
Q Consensus 197 GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~----------------~fv--~----~~~~eY 254 (340)
.|......||||||.+|+|..++|.++....||+.+.+-|++....|. .|. + .+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 466678999999999999999999999999999999999987533221 122 2 234444
Q ss_pred HHhhccCCCCCchHHHHHHHHHhCCcEEEEEcCC-----CceE--E----EecCC----CCCCCCeEEEEeCCCCeeeee
Q 019511 255 LEKMSESGEWGDHVTLQAAADLYGVKIFVITSFK-----DTCY--I----EILPN----VERSIRVIYLSFWAEVHYNSI 319 (340)
Q Consensus 255 l~kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~-----~t~~--I----~i~P~----~~~~~~~I~Lsy~~~~HYdSV 319 (340)
++.-+.+|+==-++-+.++|+++++||+|+...- +..+ + .+.|- ....+.||.|+|. ..||.+|
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaL 346 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSAL 346 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEE
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeee
Confidence 5545566654556888999999999999997532 1100 1 13342 3456789999997 5799999
Q ss_pred ecCCCC
Q 019511 320 YPAGGK 325 (340)
Q Consensus 320 ~~~~d~ 325 (340)
++.+..
T Consensus 347 V~~~~~ 352 (454)
T 3zrh_A 347 VAMEND 352 (454)
T ss_dssp EEBCCC
T ss_pred eecccc
Confidence 998763
Done!