BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019512
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 281 bits (720), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 223/337 (66%), Gaps = 8/337 (2%)
Query: 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNS 59
M LF + P +IV+ +D N + ++ K+ DK +E + K+++ +K IL G +
Sbjct: 6 MLPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTN 60
Query: 60 ESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD 119
E EP +EA AQL E + L LI L ++ E +KD TQ+ N+ R+Q+ ++ +
Sbjct: 61 EKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVE 120
Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
Y+ A+ +L +L+ GYE +AL G MLRECIRH+ +A+ +L S + FF Y++L F
Sbjct: 121 YISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTF 180
Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
DIA+DA ATFK+LLTRHK VA+FL +NYD F +Y KLL+S NY+T+RQ++KLLG+++
Sbjct: 181 DIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLKLLGELI 239
Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVA 299
LDR N +MT+Y+S ENL+++MNLLR+ S +IQ EAFHVFK+F A+ +K IV IL+
Sbjct: 240 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK 299
Query: 300 NRSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLE 335
N+ KL+ + F+ ++ +DEQF +K ++K+I L+
Sbjct: 300 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLK 336
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/337 (44%), Positives = 225/337 (66%), Gaps = 6/337 (1%)
Query: 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPV 64
F ++P DIV+ ++ + + D+ + K E E+ KN+ +K ILYG +E EP
Sbjct: 5 FGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQ 63
Query: 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN 124
+EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y+
Sbjct: 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ 123
Query: 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD 184
++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+ FF Y+++ FDIA+D
Sbjct: 124 QNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASD 183
Query: 185 AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244
A ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ++KLLG++LLDR N
Sbjct: 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLKLLGELLLDRHN 242
Query: 245 SVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKL 304
+MT+Y+S ENL+++MNLLR+ S++IQ EAFHVFK+F AN NK I+ IL+ N++KL
Sbjct: 243 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKL 302
Query: 305 LRLFADFKTDK-EDEQFEADKAQVVKEIAGLEPRDRP 340
+ + F+ D+ EDEQF +K +VK+I L+ RP
Sbjct: 303 IEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK---RP 336
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 215/332 (64%), Gaps = 3/332 (0%)
Query: 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPV 64
F ++P DIV+ ++ + D+ + K E E+ KN+ K ILYG +E EP
Sbjct: 5 FGKSHKSPADIVKNLKESXAVLEKQ-DISDKKAEKATEEVSKNLVAXKEILYGTNEKEPQ 63
Query: 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN 124
+EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y+
Sbjct: 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ 123
Query: 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD 184
++L L+ GYE+ ++AL+ G LRECIRH+ +A+ +L S+ FF Y++ FDIA+D
Sbjct: 124 QNILFXLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASD 183
Query: 185 AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244
A ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ++KLLG++LLDR N
Sbjct: 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLKLLGELLLDRHN 242
Query: 245 SVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKL 304
+ T+Y+S ENL++ NLLR+ S++IQ EAFHVFK+F AN NK I+ IL+ N++KL
Sbjct: 243 FTIXTKYISKPENLKLXXNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKL 302
Query: 305 LRLFADFKTDK-EDEQFEADKAQVVKEIAGLE 335
+ + F+ D+ EDEQF +K +VK+I L+
Sbjct: 303 IEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 136 ENTDMALH-----YGAMLRECIR-HQSVARY------VLESQHMKKFFDYIQLPNFDIAA 183
E+TD H Y LR+C H S+ + KF +++ FD
Sbjct: 18 ESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHV-FRTFDANG 76
Query: 184 DAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLL 235
D F+E + T L + W F+ Y+ L+ + YI++ + ++++
Sbjct: 77 DGTIDFREFIIALSVTSRGKLEQKLKWAFSMYD---LDGNGYISKAEMLEIV 125
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 1878
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 243 SNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSI----LV 298
S VV+ S++++ L+N + ++ + + +V FAA +I SI +
Sbjct: 707 SQLVVVPFNQGSKQDVEALVNYIYDTKNGLGWDLDYVVP-FAAIPENGREIDSIDSKSEL 765
Query: 299 ANR---SKLLRLFADFKTDKEDEQFEADKAQVV 328
A+R + LLRL KT K++ +E AQV+
Sbjct: 766 AHRIMLTNLLRLLGAIKTQKKERGYETRPAQVI 798
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With
Daminozide
Length = 374
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 15 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 60
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 12 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 57
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 4 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,370,357
Number of Sequences: 62578
Number of extensions: 296272
Number of successful extensions: 845
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 11
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)