Query 019512
Match_columns 340
No_of_seqs 122 out of 226
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 2E-127 5E-132 934.9 32.2 332 1-336 1-335 (335)
2 KOG1566 Conserved protein Mo25 100.0 5E-122 1E-126 879.1 33.0 339 1-339 1-341 (342)
3 KOG1566 Conserved protein Mo25 92.0 0.52 1.1E-05 47.0 7.3 185 125-322 38-254 (342)
4 cd00020 ARM Armadillo/beta-cat 88.7 2.4 5.1E-05 33.4 7.3 110 165-281 7-116 (120)
5 PF08064 UME: UME (NUC010) dom 86.7 2.4 5.1E-05 35.3 6.4 80 201-288 2-86 (107)
6 PF08767 CRM1_C: CRM1 C termin 84.1 46 0.00099 32.8 15.1 159 80-239 72-243 (319)
7 PF12717 Cnd1: non-SMC mitotic 83.8 11 0.00024 33.6 9.8 86 181-283 4-90 (178)
8 KOG1525 Sister chromatid cohes 83.7 89 0.0019 36.9 19.0 254 9-286 16-330 (1266)
9 PLN03200 cellulose synthase-in 83.0 1.2E+02 0.0027 37.5 20.3 193 71-281 438-634 (2102)
10 PF10508 Proteasom_PSMB: Prote 82.9 48 0.001 34.7 15.4 158 124-289 75-235 (503)
11 cd00020 ARM Armadillo/beta-cat 81.7 16 0.00036 28.5 9.1 97 138-238 21-118 (120)
12 KOG0946 ER-Golgi vesicle-tethe 81.5 47 0.001 37.3 14.9 128 65-199 107-246 (970)
13 PLN03200 cellulose synthase-in 79.8 49 0.0011 40.8 15.5 200 75-291 526-729 (2102)
14 PF01602 Adaptin_N: Adaptin N 79.0 29 0.00063 35.1 12.0 101 169-281 156-256 (526)
15 PF12348 CLASP_N: CLASP N term 77.5 17 0.00038 32.8 9.0 204 89-305 17-227 (228)
16 KOG0946 ER-Golgi vesicle-tethe 75.1 24 0.00052 39.5 10.5 165 65-278 21-188 (970)
17 PTZ00446 vacuolar sorting prot 68.8 8.4 0.00018 35.8 4.7 28 1-28 1-41 (191)
18 PF10508 Proteasom_PSMB: Prote 67.5 1.6E+02 0.0036 30.7 20.4 246 73-336 196-465 (503)
19 PF12783 Sec7_N: Guanine nucle 65.9 83 0.0018 27.5 10.3 78 162-243 70-149 (168)
20 smart00802 UME Domain in UVSB 65.8 20 0.00044 30.1 6.1 80 201-288 2-86 (107)
21 PF03224 V-ATPase_H_N: V-ATPas 65.1 30 0.00065 33.5 8.0 109 167-280 107-222 (312)
22 PF08569 Mo25: Mo25-like; Int 62.2 67 0.0014 32.2 10.0 143 161-313 72-219 (335)
23 PF12717 Cnd1: non-SMC mitotic 61.2 78 0.0017 28.1 9.4 81 166-251 64-151 (178)
24 KOG1992 Nuclear export recepto 60.2 53 0.0012 37.0 9.4 72 202-277 226-309 (960)
25 KOG1655 Protein involved in va 54.9 45 0.00097 31.5 6.8 68 1-77 1-70 (218)
26 PF13646 HEAT_2: HEAT repeats; 52.1 5 0.00011 30.5 0.1 52 218-283 7-58 (88)
27 PF05952 ComX: Bacillus compet 51.6 11 0.00023 28.7 1.8 19 117-135 5-23 (57)
28 KOG1058 Vesicle coat complex C 48.0 3.4E+02 0.0073 30.8 12.9 227 48-307 38-301 (948)
29 PF01602 Adaptin_N: Adaptin N 47.2 3.2E+02 0.0069 27.6 14.6 118 166-292 340-468 (526)
30 PF05804 KAP: Kinesin-associat 43.6 1.8E+02 0.0039 32.3 10.3 126 146-279 171-313 (708)
31 PF01417 ENTH: ENTH domain; I 42.2 92 0.002 26.1 6.4 91 58-152 14-112 (125)
32 PF01365 RYDR_ITPR: RIH domain 42.0 62 0.0013 29.4 5.7 53 181-240 115-169 (207)
33 PF13646 HEAT_2: HEAT repeats; 40.5 57 0.0012 24.5 4.5 51 211-276 32-83 (88)
34 KOG0166 Karyopherin (importin) 40.3 2.2E+02 0.0047 30.5 10.0 114 72-190 357-482 (514)
35 KOG1991 Nuclear transport rece 38.9 6.8E+02 0.015 29.1 15.0 158 89-267 48-233 (1010)
36 PF06371 Drf_GBD: Diaphanous G 38.7 2.6E+02 0.0057 24.2 9.6 60 176-239 127-186 (187)
37 cd00256 VATPase_H VATPase_H, r 36.8 4.4E+02 0.0095 27.5 11.4 47 229-279 162-210 (429)
38 PF15087 DUF4551: Protein of u 36.7 3.2E+02 0.007 29.9 10.6 205 15-239 374-613 (617)
39 cd03572 ENTH_epsin_related ENT 36.0 2.9E+02 0.0062 23.9 8.5 85 65-152 19-110 (122)
40 COG5231 VMA13 Vacuolar H+-ATPa 34.3 1.3E+02 0.0028 30.8 6.9 124 161-294 99-231 (432)
41 KOG1059 Vesicle coat complex A 33.6 7.6E+02 0.016 28.0 15.6 147 43-198 33-214 (877)
42 PF00514 Arm: Armadillo/beta-c 32.9 1.4E+02 0.003 19.8 5.0 37 71-107 4-40 (41)
43 PF12348 CLASP_N: CLASP N term 32.4 3.7E+02 0.008 24.1 9.2 153 175-333 17-184 (228)
44 PF07304 SRA1: Steroid recepto 30.4 1.4E+02 0.0031 26.6 5.9 41 41-81 67-107 (157)
45 PF06757 Ins_allergen_rp: Inse 29.9 1.4E+02 0.003 26.8 5.8 64 156-225 23-89 (179)
46 PF14680 FANCI_HD2: FANCI heli 29.3 55 0.0012 31.1 3.3 47 144-213 35-84 (234)
47 KOG3666 Uncharacterized conser 28.9 9.1E+02 0.02 27.5 14.8 151 42-201 666-842 (1141)
48 PF03224 V-ATPase_H_N: V-ATPas 27.9 1.9E+02 0.0041 28.0 6.8 124 180-310 25-157 (312)
49 KOG1104 Nuclear cap-binding co 26.3 93 0.002 34.6 4.6 87 90-181 325-428 (759)
50 PF12231 Rif1_N: Rap1-interact 26.2 6.7E+02 0.015 25.1 12.4 113 211-334 233-350 (372)
51 COG5657 CSE1 CAS/CSE protein i 25.6 3.2E+02 0.007 31.3 8.6 64 157-224 175-241 (947)
52 PF04388 Hamartin: Hamartin pr 25.3 4E+02 0.0086 29.3 9.3 72 166-240 5-97 (668)
53 PF10350 DUF2428: Putative dea 25.2 4.2E+02 0.009 25.1 8.4 110 175-298 110-239 (255)
54 PTZ00464 SNF-7-like protein; P 24.0 2E+02 0.0043 27.1 5.9 27 1-27 1-31 (211)
55 KOG0166 Karyopherin (importin) 23.7 9.3E+02 0.02 25.9 11.3 200 87-299 122-363 (514)
56 PF12552 DUF3741: Protein of u 21.7 89 0.0019 22.7 2.4 19 292-310 25-43 (46)
57 KOG2149 Uncharacterized conser 21.0 9.5E+02 0.021 25.0 10.5 191 80-302 59-268 (393)
58 PF13513 HEAT_EZ: HEAT-like re 20.3 1E+02 0.0022 21.6 2.5 48 227-278 3-50 (55)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=2.3e-127 Score=934.94 Aligned_cols=332 Identities=58% Similarity=0.924 Sum_probs=293.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 019512 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (340)
Q Consensus 1 M~~lF~~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (340)
|+||||++||||+|+||+++|+|.+|+ + ..++++++..|||+|+|++||+||+|++|++|+||+|+|||+|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~--~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD-S--KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH-S--S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc-c--ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999998 2 2456666667999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCcc-chhHHhhhc-HhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHH
Q 019512 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (340)
Q Consensus 81 l~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLRecik~e~la 158 (340)
+..||.+|+.||||+|||+++||++++|+++|+++ |+|+||++| |||+++|++||++||+|++||+|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 019512 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (340)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~el 238 (340)
++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||+.|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-cc
Q 019512 239 LLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-ED 317 (340)
Q Consensus 239 Lldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D 317 (340)
|+||+|++||+|||+||+|||+||+||+|+|||||+|||||||||||||+||+||++||.+||+|||+||.+|++|+ +|
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D 316 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDD 316 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHhcCCC
Q 019512 318 EQFEADKAQVVKEIAGLEP 336 (340)
Q Consensus 318 ~qF~dEK~~li~~I~~L~~ 336 (340)
+||.|||++||++|++|||
T Consensus 317 ~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 317 EQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp CHHHHHHHHHHHHHHT---
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999986
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=5.3e-122 Score=879.12 Aligned_cols=339 Identities=58% Similarity=0.897 Sum_probs=332.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 019512 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (340)
Q Consensus 1 M~~lF~~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (340)
|++||+++||||+|+||.+||+|.+++..++..++|+++.+|||+|++..+|+|+||++|.+|.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999998766788898888999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccC-chhhhhHHHHHHHHHhHHHHHH
Q 019512 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-TDMALHYGAMLRECIRHQSVAR 159 (340)
Q Consensus 81 l~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~-~dial~~G~mLRecik~e~la~ 159 (340)
+.+||.++|+++||+|||+++||++++||++|+|+|||+|+++|||+++.|++||++ ||+|++||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 019512 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (340)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elL 239 (340)
++|+|++||+||.||+.|+||||||||+|||++||+||.+|||||.+||||||..|+++|++|+||||||||+||||++|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996679999999999999999999999
Q ss_pred ccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-ccc
Q 019512 240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDE 318 (340)
Q Consensus 240 ldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D~ 318 (340)
+||+|+.+|++||++|+|||+||+||+|+|||||+||||||||||||||||+||.+||.+||+||++|+.+|++|+ +|+
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~De 320 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDE 320 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHhcCCCCCC
Q 019512 319 QFEADKAQVVKEIAGLEPRDR 339 (340)
Q Consensus 319 qF~dEK~~li~~I~~L~~~~~ 339 (340)
||.|||+|+|+||++|++.+.
T Consensus 321 qF~dEk~~~i~eI~~l~~~~~ 341 (342)
T KOG1566|consen 321 QFLDEKAYLIKEIRQLKRLDS 341 (342)
T ss_pred hhhhhHHHHHHHHHhcccccC
Confidence 999999999999999988753
No 3
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.99 E-value=0.52 Score=46.95 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=114.0
Q ss_pred HhHHHHHHHhccCchhhhhHHHHHHHHHhHH-HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhCh---HHH
Q 019512 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---STV 200 (340)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk---~lv 200 (340)
-++++.+-+||..+...+..++..+.-...- +|+.-+-.+..+.....++..-.||--=|+...|.-++.++. ..+
T Consensus 38 ~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~t 117 (342)
T KOG1566|consen 38 EKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPT 117 (342)
T ss_pred HHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchH
Confidence 4555555566655555554444444433222 234444444556666666666677766777777777776554 456
Q ss_pred HHHHHhcHHHHH---HHH---HHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccch
Q 019512 201 AEFLSKNYDWFF---AEY---NSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQI 274 (340)
Q Consensus 201 aefl~~nyd~Ff---~~y---n~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~ 274 (340)
++||..|.+-.+ ..| ...+|++||....--+-+.|++++|.-.|+.-.-.||..|.. ++ ..
T Consensus 118 v~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-di------------as 184 (342)
T KOG1566|consen 118 VEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-DI------------AS 184 (342)
T ss_pred HHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-HH------------HH
Confidence 677776654422 222 135778888887777778899999999999999999988876 43 57
Q ss_pred hhhhhhhh------------hhcCCCCC-hhHHHHHHHhHH---------HHHHHHhcCCCCCcccchHH
Q 019512 275 EAFHVFKL------------FAANQNKP-PDIVSILVANRS---------KLLRLFADFKTDKEDEQFEA 322 (340)
Q Consensus 275 EAFhvFKv------------FVANP~K~-~~I~~IL~~Nr~---------kLi~fl~~f~~d~~D~qF~d 322 (340)
+||..||- |..||+.. +++..-|.+|+. -|..++-+=+|...+.++..
T Consensus 185 dA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYis 254 (342)
T KOG1566|consen 185 DAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYIS 254 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhc
Confidence 88888884 44466665 555555555553 23344444444445555555
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.67 E-value=2.4 Score=33.36 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=80.2
Q ss_pred hhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccc
Q 019512 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244 (340)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N 244 (340)
+.+..+.+.+..++-++-..|..++..+-...+.....++..+ ++... ..++.++|+-.++.++..|+.|..+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~l-~~~l~~~~~~v~~~a~~~L~~l~~~~~- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG---GLPAL-VQLLKSEDEEVVKAALWALRNLAAGPE- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---ChHHH-HHHHhCCCHHHHHHHHHHHHHHccCcH-
Confidence 3444555666667778889999999987766677888887744 34444 378888999999999999999986543
Q ss_pred hHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhh
Q 019512 245 SVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFK 281 (340)
Q Consensus 245 ~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFK 281 (340)
... ..+-+..-+..+..+|.+.+..++-.|..++.
T Consensus 82 -~~~-~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 82 -DNK-LIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred -HHH-HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222 23334557899999999988777777766554
No 5
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.66 E-value=2.4 Score=35.34 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=57.6
Q ss_pred HHHHHhcHHHHHHHHHHhhcc---CCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhcc--Cccccchh
Q 019512 201 AEFLSKNYDWFFAEYNSKLLE---SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRE--SSKSIQIE 275 (340)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~---s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d--~sk~Iq~E 275 (340)
++||..|+=..+..+|..|.. +..|..|+++++=+++++- .+..||+... =| ||..|+. ..+.++.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~~-pQ-I~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSAR-PQ-IMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHHH-HH-HHHHHHHHhCChhhHHH
Confidence 678999987777777755555 7999999999999999993 3334444321 22 4444443 44578999
Q ss_pred hhhhhhhhhcCCC
Q 019512 276 AFHVFKLFAANQN 288 (340)
Q Consensus 276 AFhvFKvFVANP~ 288 (340)
|+.++..||-+=.
T Consensus 74 al~~W~~fi~~L~ 86 (107)
T PF08064_consen 74 ALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHHCC
Confidence 9999999998543
No 6
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=84.05 E-value=46 Score=32.80 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCCChhhhh-cHHHHHHHHhhhhccCccchhHHhhhc--HhHHHHHHHhcc-CchhhhhHHHHHHHHHhHH
Q 019512 80 TLRLLITCLPKLNLEARK-DATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYE-NTDMALHYGAMLRECIRHQ 155 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rK-dv~~If~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gY~-~~dial~~G~mLRecik~e 155 (340)
++..++..-..-..++|- .|-.+++.+.++-.+.-.|.+.-+..+ --++.++-+.++ .||....+=.+||-++++-
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 344344444444555565 455566666664333222223222221 122333344444 6999999999999999884
Q ss_pred HHHHHHhcchhhHhhhhhc----cCCChhhhhhHHHHHHHHHhhC----hHHHHHHHHhcHHHHHHHHHHhhccCCC-cc
Q 019512 156 SVARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRH----KSTVAEFLSKNYDWFFAEYNSKLLESSN-YI 226 (340)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv----~~~~FdiasDAf~tfkellt~h----k~lvaefl~~nyd~Ff~~yn~~Ll~s~N-YV 226 (340)
.-+=.-|..+.|..+++.+ +.++-||+..++.++.++++.- +..+.+|..+.|-.+..+.-.-|..+.. ..
T Consensus 152 f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~g 231 (319)
T PF08767_consen 152 FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSG 231 (319)
T ss_dssp THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHH
Confidence 3222336667777777766 5789999999999999999953 4566688887776666654333433332 23
Q ss_pred hhhhhHHHHHHHh
Q 019512 227 TRRQAVKLLGDIL 239 (340)
Q Consensus 227 tkRQSLKLL~elL 239 (340)
-+.|+ .+|..++
T Consensus 232 f~~q~-~iL~~Lf 243 (319)
T PF08767_consen 232 FKLQS-QILSNLF 243 (319)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 33333 5555555
No 7
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.78 E-value=11 Score=33.55 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=67.2
Q ss_pred hhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhH-H
Q 019512 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENL-R 259 (340)
Q Consensus 181 iasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NL-k 259 (340)
|-+-|..++-++..+|+.++-.|+.. . ...|.+++=..|++++..|..|++. -|+--...+ -
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~--------l-~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~ 66 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPN--------L-YKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHH--------H-HHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhH
Confidence 45678889999999999988665542 2 1678888999999999999999864 356556666 7
Q ss_pred HHHHHhccCccccchhhhhhhhhh
Q 019512 260 ILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 260 liM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
.++.+|.|++..|+--|=..|.=+
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSEL 90 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 778888999999988887766543
No 8
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.73 E-value=89 Score=36.88 Aligned_cols=254 Identities=15% Similarity=0.175 Sum_probs=150.2
Q ss_pred CCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHH-HHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhh
Q 019512 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIR-ELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (340)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~-~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (340)
+=|-.|+++.|++...-|.+... +. .. .+.+.+... -++..+....+.+- +|--..|-+|+++. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~q--d~--~~-~~~~~pl~~~l~~~~~L~h~d~dv------rllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQ--DN--LD-LASLLPLADHLIKDFLLKHKDKDV------RLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhccc--Cc--hh-HHHHHHHHHHHhhHHHhcCCCcCh------hHHHHHHHHHHHHH---h
Confidence 45567888888887666654321 11 11 123333333 24555555555443 35555555555554 4
Q ss_pred CCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHh--------c-------------------cCchh
Q 019512 88 LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--------Y-------------------ENTDM 140 (340)
Q Consensus 88 l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--------Y-------------------~~~di 140 (340)
-|.+||+.- +...||..++++.-|-.-+.--|.-+++.++..|... + ..|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 577888766 8889999999877554444445555555555555221 1 12333
Q ss_pred hhhHHHHHHHHHhHH-----HHHHHHhcc----------------------------hhhHhhhhhccCCChhhhhhHHH
Q 019512 141 ALHYGAMLRECIRHQ-----SVARYVLES----------------------------QHMKKFFDYIQLPNFDIAADAAA 187 (340)
Q Consensus 141 al~~G~mLRecik~e-----~la~~iL~~----------------------------~~f~~fF~yv~~~~FdiasDAf~ 187 (340)
..+-+.|++..|--. .+...+|++ +...+|+.-.-...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 344555555544322 222223322 02333433211122224455556
Q ss_pred HHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhcc
Q 019512 188 TFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRE 267 (340)
Q Consensus 188 tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d 267 (340)
-+.+++-.+..++.+-|..=.. +. +.=|.|+|=-+|-++++|+|.++.++...-. =..++-.+....-+.|
T Consensus 241 ~~he~i~~L~~~~p~ll~~vip----~l-~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLAVIP----QL-EFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFND 311 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----HH-HHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhcc
Confidence 6666666666666665553322 22 1346788889999999999999998875443 3367888899999999
Q ss_pred CccccchhhhhhhhhhhcC
Q 019512 268 SSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 268 ~sk~Iq~EAFhvFKvFVAN 286 (340)
++-.+++|..-.=|.+.+|
T Consensus 312 ~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred CChhhhhhHHHHhHHHHhc
Confidence 9999999999999988775
No 9
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.98 E-value=1.2e+02 Score=37.52 Aligned_cols=193 Identities=19% Similarity=0.177 Sum_probs=129.4
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhc--HhHHHHHHHhccCchhhhhHHHHH
Q 019512 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAML 148 (340)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gY~~~dial~~G~mL 148 (340)
..+.+...+.+..|+..|..=+-+.|+.++....++-.....++ .--+... |-++..|-.| ++++--.+-..|
T Consensus 438 ~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr---~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL 512 (2102)
T PLN03200 438 LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK---WAITAAGGIPPLVQLLETG--SQKAKEDSATVL 512 (2102)
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 34566677788999999988777788888777777654221111 1111111 4444444333 333333333333
Q ss_pred HHHHhHH-HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhC-hHHHHHHHHhcHHHHHHHHHHhhccCCCcc
Q 019512 149 RECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (340)
Q Consensus 149 Recik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~h-k~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (340)
-.+..|+ .....+...+.+-.+.+.++.+++++-..|..++..+.... +..+ ..+ ..|+.+++--
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~L-v~LLlsdd~~ 579 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQL-TALLLGDLPE 579 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHH-HHHhcCCChh
Confidence 3323344 44444556678888888899999999888888888775432 2211 334 2678888888
Q ss_pred hhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhh
Q 019512 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFK 281 (340)
Q Consensus 227 tkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFK 281 (340)
++-.+++.||-++.--....+.+.-+.+..=+..+..||++.++.+|-+|..+.-
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888999999998766666666666777789999999999999999999996653
No 10
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.88 E-value=48 Score=34.66 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=113.3
Q ss_pred cHhHHHHHHHhccCchhhh--hHHHHHHHHHhHHHH-HHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHH
Q 019512 124 NIDLLDILIAGYENTDMAL--HYGAMLRECIRHQSV-ARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTV 200 (340)
Q Consensus 124 ~peil~~L~~gY~~~dial--~~G~mLRecik~e~l-a~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lv 200 (340)
-|++...|..|..+|+-.. .+=..|+-|+++... +..+...+.+-.+...+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 5677777777776654332 222336777777665 4555556666677788999999999999999999986 45444
Q ss_pred HHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhh
Q 019512 201 AEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVF 280 (340)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvF 280 (340)
+..+..|. ..... .++..+|=+.|.+.+.++.++. ......+ .++.+..-+..+...|.++---+|.-|.-++
T Consensus 154 ~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 154 EQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIA--SHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred HHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHH--hcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 55666664 45664 7888877788999999999996 4444444 5666667899999999997767788888888
Q ss_pred hhhhcCCCC
Q 019512 281 KLFAANQNK 289 (340)
Q Consensus 281 KvFVANP~K 289 (340)
.-....|+-
T Consensus 227 ~~La~~~~g 235 (503)
T PF10508_consen 227 SELAETPHG 235 (503)
T ss_pred HHHHcChhH
Confidence 877764443
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=81.73 E-value=16 Score=28.46 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred chhhhhHHHHHHHHHhH-HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHH
Q 019512 138 TDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYN 216 (340)
Q Consensus 138 ~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn 216 (340)
++.-..+-..|..+..+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555556666555 77788888888888888899889999999999999999776654333444333 344453
Q ss_pred HhhccCCCcchhhhhHHHHHHH
Q 019512 217 SKLLESSNYITRRQAVKLLGDI 238 (340)
Q Consensus 217 ~~Ll~s~NYVtkRQSLKLL~el 238 (340)
+++.+++.=++++++-+|+.|
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHh
Confidence 677888888999999888876
No 12
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.45 E-value=47 Score=37.33 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhh-chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHH-hhhcHhHHHHHHHhccC-----
Q 019512 65 SEACAQLTAEFFRE-NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY-LEANIDLLDILIAGYEN----- 137 (340)
Q Consensus 65 ~e~~~qLa~ei~~~-dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Y-l~~~peil~~L~~gY~~----- 137 (340)
.+.-.++|..++.. |.+..|+..+...||-.|.-..++++++++.. .+-++- +..+|--+..|+.--.+
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r----~~e~q~~ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR----PTELQDALLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC----CHHHHHHHHHCchhHHHHHHHHhhhhhhh
Confidence 44567888888655 89999999999999999999999999999844 333444 56677766666654322
Q ss_pred -chhhhhHHHHHHHHHhHHHHHHHHhcchhhHhhhhhccC----CChhhhhhHHHHHHHHHhhChHH
Q 019512 138 -TDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQL----PNFDIAADAAATFKELLTRHKST 199 (340)
Q Consensus 138 -~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~tfkellt~hk~l 199 (340)
.|-.+..-..-|+|-.. -+.+-....|..+|+-++- ..==|.-|++.-+.-||..|-+-
T Consensus 183 RNe~iLlL~eL~k~n~~I---QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSSI---QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred chhHHHHHHHHHccCchH---HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 11222222222222222 2222233346666666642 22236678888888888877543
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=79.77 E-value=49 Score=40.83 Aligned_cols=200 Identities=12% Similarity=0.146 Sum_probs=137.8
Q ss_pred HHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhh----hHHHHHHH
Q 019512 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL----HYGAMLRE 150 (340)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial----~~G~mLRe 150 (340)
+.+.+.+..|+.-|..=+++.|+.++....++.+..... .+ +.++.. +.+ +++.+-. ..|.|+-.
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---~I------~~Lv~L-Lls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---TI------SQLTAL-LLG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---HH------HHHHHH-hcC-CChhHHHHHHHHHHHHHhh
Confidence 345688888888888889999999888777776532111 11 222222 111 1222222 23444444
Q ss_pred HHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhh
Q 019512 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (340)
Q Consensus 151 cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (340)
+-.++...........+..+.+.++.++=++--+|..++-.+.+.+++.....+..+- +.-.- .||.+++.-++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga---IpPLV-~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI---INPCI-KLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC---HHHHH-HHHhcCChHHHHH
Confidence 4444444443444567778888888888899999999999999999988777666553 22332 7999999999999
Q ss_pred hHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCCh
Q 019512 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPP 291 (340)
Q Consensus 231 SLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~ 291 (340)
+-.-|+.+.. ...+--..++-...-++.++.+|++++-.+.-+|-...--++..|.-..
T Consensus 671 AA~AL~nL~~--~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ 729 (2102)
T PLN03200 671 SARALAALSR--SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729 (2102)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence 9999999995 2333322344567789999999999999999999999888888886443
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=78.97 E-value=29 Score=35.15 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=60.0
Q ss_pred hhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHH
Q 019512 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (340)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm 248 (340)
.+.+.+.-++-.|.+.|...+.++ ...+.....++. .++.... +++...+-..+...+++|+.+. +.+..-.
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~----~~~~~L~-~~l~~~~~~~q~~il~~l~~~~--~~~~~~~ 227 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP----KLIRILC-QLLSDPDPWLQIKILRLLRRYA--PMEPEDA 227 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH----HHHHHHH-HHHTCCSHHHHHHHHHHHTTST--SSSHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH----HHHHHhh-hcccccchHHHHHHHHHHHhcc--cCChhhh
Confidence 333455667888999999999988 322322222222 2333442 5557777777778888887665 3333333
Q ss_pred HHhhcChhhHHHHHHHhccCccccchhhhhhhh
Q 019512 249 TRYVSSRENLRILMNLLRESSKSIQIEAFHVFK 281 (340)
Q Consensus 249 ~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFK 281 (340)
.. ...+..+..+|++.+..|.+||...+=
T Consensus 228 ~~----~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 228 DK----NRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11 445666666666777777777665543
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.48 E-value=17 Score=32.81 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=94.6
Q ss_pred CCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchh--hhhHHHHHHHHHhHHH--HHHHHhcc
Q 019512 89 PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM--ALHYGAMLRECIRHQS--VARYVLES 164 (340)
Q Consensus 89 ~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~di--al~~G~mLRecik~e~--la~~iL~~ 164 (340)
+.-+|+.|.+..+-...+++...... ..-.|+..=.+++..+...-.+... +-++-..+.+++++-. +..+ -+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~-~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPED-FPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccc-cHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 56788888888887777777552111 1122222212555556555554333 3333333333332211 0000 01
Q ss_pred hhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHH-HHHHHHhhccCCCcchhhhhHHHHHHHhcccc
Q 019512 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWF-FAEYNSKLLESSNYITRRQAVKLLGDILLDRS 243 (340)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~F-f~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~ 243 (340)
..+-.+++-+..++=-|+..|-.++..+...-. . ..+. +.... ....+.|=-.|+.++.+|..++..-.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILS-QGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHH-HHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 112233333334444577777777777665322 0 1233 44453 78889999999999999998884433
Q ss_pred -chHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc-CCCCChhHHHHHHHhHHHHH
Q 019512 244 -NSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA-NQNKPPDIVSILVANRSKLL 305 (340)
Q Consensus 244 -N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA-NP~K~~~I~~IL~~Nr~kLi 305 (340)
+...+..-..=+.-.+.+..+|.|.+..++-.|..+|-.|-. -|.+...+.+-|-.|..|.+
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYL 227 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------------
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccC
Confidence 122222211126678899999999999999999999887733 55555555555555554443
No 16
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.11 E-value=24 Score=39.45 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhh---hhccCccchhHHhhhcHhHHHHHHHhccCchhh
Q 019512 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQR---QQVHSKLIASDYLEANIDLLDILIAGYENTDMA 141 (340)
Q Consensus 65 ~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr---~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dia 141 (340)
.|.+..|..-+..+-+ +|-|||++.=.-.+-| -.+|.. -=+-++..|-+-|.++|+.
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~--------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQ--------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHhhccCCHHHH
Confidence 4556667666666544 3568887764443333 222211 1267888888889888876
Q ss_pred hhHHHHHHHHHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhcc
Q 019512 142 LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE 221 (340)
Q Consensus 142 l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~ 221 (340)
-.+=..+--.++|+. +-..+..+. .+.|-=.-|-|.|+..+..+.--+ ..++
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll-------------~~~e 132 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLL-------------QSLE 132 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHH-------------HHHH
Confidence 554444443344433 122334555 666766778888888776554322 2333
Q ss_pred CCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhh
Q 019512 222 SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFH 278 (340)
Q Consensus 222 s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFh 278 (340)
.-++-.||-+++||..+|..|. -++-.--+.+|--.--+|-+|+|....|+=||--
T Consensus 133 ~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 133 EFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred hhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 4457889999999999999998 6777888999999999999999999999988864
No 17
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=68.84 E-value=8.4 Score=35.78 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.6
Q ss_pred CCCCCCCCCCC-------------hHHHHHHHHHHHHHhhc
Q 019512 1 MKGLFKSKPRT-------------PVDIVRQTRDLIIYANR 28 (340)
Q Consensus 1 M~~lF~~~~Kt-------------P~elVr~l~e~l~~L~~ 28 (340)
|.||||++.++ |.+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88999876444 45566677777777764
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=67.52 E-value=1.6e+02 Score=30.71 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=145.6
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhc---HhHHHHHHHhccCc--hhhhhHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENT--DMALHYGAM 147 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gY~~~--dial~~G~m 147 (340)
+.+..++++..++..+..=|.=.|..+..++..+-... ...+||.+. +.+...+...=++| ...+..|.|
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-----~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-----HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-----hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 33444566677777666655556777777777665522 237888774 33333433333455 333445554
Q ss_pred HHHHHhHHHHHHH------HhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHH----hcHHHHHHHHHH
Q 019512 148 LRECIRHQSVARY------VLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLS----KNYDWFFAEYNS 217 (340)
Q Consensus 148 LRecik~e~la~~------iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~----~nyd~Ff~~yn~ 217 (340)
.= ...++.+ -.+...+...|+.++..+=.+..-||.|+=.+=++. --.+.|. .........|-
T Consensus 271 ~f----~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--~G~~~L~~~~~~~~~~~l~~~~- 343 (503)
T PF10508_consen 271 KF----FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIG- 343 (503)
T ss_pred HH----HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--HHHHHHHhhcchHHHHHHHHHH-
Confidence 11 1222221 112223346677777777777777777776553221 1223331 12333444442
Q ss_pred hhccCCCcchhhhhHHHHHHHhcccc---chHH---HH---HhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCC
Q 019512 218 KLLESSNYITRRQAVKLLGDILLDRS---NSVV---MT---RYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQN 288 (340)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLL~elLldr~---N~~v---m~---~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~ 288 (340)
....++.=-.|--+|.=|+.++.-.. +-.+ .. ...++.....++|.+++.+-.-|+.-||++++-.++-|
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~- 422 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP- 422 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-
Confidence 44455554456666777777753322 2222 22 44556666669999999999999999999999998876
Q ss_pred CChhHHHHHHHhHHHHHHHHhcCCCCCcccchHHHHHHHHHHHhcCCC
Q 019512 289 KPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEP 336 (340)
Q Consensus 289 K~~~I~~IL~~Nr~kLi~fl~~f~~d~~D~qF~dEK~~li~~I~~L~~ 336 (340)
-.+.. +.|...+++|+-+=.+|. |.+=.+=|--+|+.|.+.+.
T Consensus 423 --Wg~~~--i~~~~gfie~lldr~~E~-~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 423 --WGQRE--ICSSPGFIEYLLDRSTET-TKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred --HHHHH--HHhCccHHhhhcCCCCCC-CHHHHHHHHHHHHHHHhccc
Confidence 34444 557777999987766654 55566777788888875543
No 19
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=65.89 E-value=83 Score=27.50 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=56.0
Q ss_pred hcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCC--cchhhhhHHHHHHHh
Q 019512 162 LESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN--YITRRQAVKLLGDIL 239 (340)
Q Consensus 162 L~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~N--YVtkRQSLKLL~elL 239 (340)
+.++-...+...+..++|.|..-+...|.-++.+++ .++..-.+.|+......++++++ |=.|.-+|..+.++.
T Consensus 70 lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 333334444455556779999999999999997765 45566678888887645888776 666667899999888
Q ss_pred cccc
Q 019512 240 LDRS 243 (340)
Q Consensus 240 ldr~ 243 (340)
-++.
T Consensus 146 ~~p~ 149 (168)
T PF12783_consen 146 KDPQ 149 (168)
T ss_pred hChh
Confidence 6664
No 20
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=65.84 E-value=20 Score=30.12 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=57.0
Q ss_pred HHHHHhcHHHHHHHHHHhhccCC---CcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhcc--Cccccchh
Q 019512 201 AEFLSKNYDWFFAEYNSKLLESS---NYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRE--SSKSIQIE 275 (340)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~s~---NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d--~sk~Iq~E 275 (340)
++||..|.=..+..++..+..+. .|.-|+++++=+|+++- +|-.+|++.-= -||..|+. ..+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~p--QI~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSALP--QIMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHhCchhHHHH
Confidence 67888888777777766666666 88999999999999993 45556655322 34444433 23448999
Q ss_pred hhhhhhhhhcCCC
Q 019512 276 AFHVFKLFAANQN 288 (340)
Q Consensus 276 AFhvFKvFVANP~ 288 (340)
||.+..+||-.=+
T Consensus 74 al~~W~~~i~~L~ 86 (107)
T smart00802 74 ALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999997433
No 21
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.06 E-value=30 Score=33.52 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=56.1
Q ss_pred hHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchH
Q 019512 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (340)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~ 246 (340)
+..|+...+.++=-|.-=|...+-.+++..+.-....-..-...|++... ..+++++-=...-++..|++++-.+.+..
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~-~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLS-SQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH--TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 45555555555555555566666666664333222211222345555553 45554322122567899999996666555
Q ss_pred HHHHhhcChhhHHHHHHHh-----ccCcccc--chhhhhhh
Q 019512 247 VMTRYVSSRENLRILMNLL-----RESSKSI--QIEAFHVF 280 (340)
Q Consensus 247 vm~~Yi~~~~NLkliM~lL-----~d~sk~I--q~EAFhvF 280 (340)
+ |.. .+.+..++.+| .+.+-++ |+++-.++
T Consensus 186 ~---f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 186 V---FWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp H---HHT-HHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred H---HHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 5 555 89999999999 3444444 66665444
No 22
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=62.24 E-value=67 Score=32.20 Aligned_cols=143 Identities=16% Similarity=0.259 Sum_probs=99.7
Q ss_pred HhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhCh---H-HHHHHHHhc-HHHHHHHHHHhhccCCCcchhhhhHHHH
Q 019512 161 VLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---S-TVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKLL 235 (340)
Q Consensus 161 iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk---~-lvaefl~~n-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLL 235 (340)
++.+..+..+...+..-.||.--|+-..|.-++.+.. . .+.+||..| -+-+.. |+..-. ...+-=.-
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~-----L~~gy~---~~dial~~ 143 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDI-----LLRGYE---NPDIALNC 143 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHH-----HHHGGG---STTTHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHH-----HHHHhc---CccccchH
Confidence 3334445555666677789999999999999998753 2 467999999 443332 222111 22233345
Q ss_pred HHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCC
Q 019512 236 GDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKT 313 (340)
Q Consensus 236 ~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~ 313 (340)
|++|-+=.=++...+||=+.+.+..+......++=-|.-+||..||-...+ -.+-|.+.|..|=+....+..+...
T Consensus 144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~--hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR--HKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 777766666677888888888888888999999999999999999986654 2357789999999998888877765
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=61.25 E-value=78 Score=28.10 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=52.2
Q ss_pred hhHhhhhhccCCChhhhhhHHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHHHHhhccC-----CCcchhhhhHHHHHHHh
Q 019512 166 HMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLES-----SNYITRRQAVKLLGDIL 239 (340)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~tfkellt~-hk~lvaefl~~nyd~Ff~~yn~~Ll~s-----~NYVtkRQSLKLL~elL 239 (340)
.|+.+...+.-++=+|++-|-.-|.+++.+ ++... .+++-.....+| ...+. .+.-.++.-.+.|-+.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~-~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLN-NCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHh-CccccccccccCHHHHHHHHHHHHHHc
Confidence 458888888899999999999999999998 66655 445555555555 33333 33334445555555555
Q ss_pred c-cccchHHHHHh
Q 019512 240 L-DRSNSVVMTRY 251 (340)
Q Consensus 240 l-dr~N~~vm~~Y 251 (340)
. |+...++..|.
T Consensus 139 ~~d~~~~~l~~kl 151 (178)
T PF12717_consen 139 DKDKQKESLVEKL 151 (178)
T ss_pred CcHHHHHHHHHHH
Confidence 5 45454444443
No 24
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.21 E-value=53 Score=36.98 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=39.7
Q ss_pred HHHHhcHHHHHHHHHHhhccCCCcchhh------hhHHH---HHHHh---ccccchHHHHHhhcChhhHHHHHHHhccCc
Q 019512 202 EFLSKNYDWFFAEYNSKLLESSNYITRR------QAVKL---LGDIL---LDRSNSVVMTRYVSSRENLRILMNLLRESS 269 (340)
Q Consensus 202 efl~~nyd~Ff~~yn~~Ll~s~NYVtkR------QSLKL---L~elL---ldr~N~~vm~~Yi~~~~NLkliM~lL~d~s 269 (340)
||+++|.+.|.+.|. ++++.+|=.-.- +=.++ +.|++ ..| +-+....|+ ++..-.+-+||.+-+
T Consensus 226 EFFEdnm~~wM~~F~-k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k-YeEef~~fl--~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFH-KLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK-YEEEFQPFL--PDFVTATWNLLVSTS 301 (960)
T ss_pred HHHHhhHHHHHHHHH-HHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh-hHHHHHhhH--HHHHHHHHHHHHhcC
Confidence 899999999999997 888865532110 11112 11111 111 111112222 233446778999988
Q ss_pred cccchhhh
Q 019512 270 KSIQIEAF 277 (340)
Q Consensus 270 k~Iq~EAF 277 (340)
+.-.++.-
T Consensus 302 ~~~kyD~L 309 (960)
T KOG1992|consen 302 PDTKYDYL 309 (960)
T ss_pred CCccHHHH
Confidence 88777643
No 25
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.91 E-value=45 Score=31.49 Aligned_cols=68 Identities=31% Similarity=0.479 Sum_probs=41.4
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHh
Q 019512 1 MKGLFK-SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (340)
Q Consensus 1 M~~lF~-~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~ 77 (340)
|.-+|+ ++||.|. -+|.++...+++.+. +-+++-.++ .|++|+=.+|+.+=-| |....+.|=|-.+.+
T Consensus 1 MnRiFG~~k~k~p~---psL~dai~~v~~r~d-Sve~KIskLDaeL~k~~~Qi~k~R~g-----paq~~~KqrAlrVLk 70 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPP---PSLQDAIDSVNKRSD-SVEKKISKLDAELCKYKDQIKKTRPG-----PAQNALKQRALRVLK 70 (218)
T ss_pred CcccccCCCCCCCC---hhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHHH
Confidence 677895 5578885 456666666665433 223333345 6899999999988333 555555555544443
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=52.11 E-value=5 Score=30.49 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=43.6
Q ss_pred hhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhh
Q 019512 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
.|..++|.-.|+.++..|| .+.+++-+..+..+|+|++..++..|.....-+
T Consensus 7 ~l~~~~~~~vr~~a~~~L~--------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALG--------------ELGDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHH--------------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHhcCCCHHHHHHHHHHHH--------------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3448999999999999999 445667799999999999999999998777755
No 27
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=51.57 E-value=11 Score=28.67 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.7
Q ss_pred hhHHhhhcHhHHHHHHHhc
Q 019512 117 ASDYLEANIDLLDILIAGY 135 (340)
Q Consensus 117 ~v~Yl~~~peil~~L~~gY 135 (340)
.|.||..||+++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 3899999999999998764
No 28
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.96 E-value=3.4e+02 Score=30.81 Aligned_cols=227 Identities=21% Similarity=0.299 Sum_probs=113.6
Q ss_pred HHHHHhhhccCCCCCCchHHHHHHHHHHH--hhc----hHHHHHhhCCCCChhhhh-cHHHHHHHHhhhh-----ccCcc
Q 019512 48 IRELKSILYGNSESEPVSEACAQLTAEFF--REN----TLRLLITCLPKLNLEARK-DATQVVANLQRQQ-----VHSKL 115 (340)
Q Consensus 48 L~~mK~il~G~~e~ep~~e~~~qLa~ei~--~~d----ll~~Li~~l~~L~fE~rK-dv~~If~~llr~~-----~~~~~ 115 (340)
+..||.++.---.+|+-|+..--+..... +.+ +|+.-....|+.+=+++= .=..+.++.+|.. -=-|.
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG 117 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcc
Confidence 33455443322223344554444444442 223 345555667776653221 1122333344422 12355
Q ss_pred chhHHhhh--cHhHHHHHHHhccCchhhhhHHHHHHHHHhHHH--HHH-HHhcchhhHhhhhhccCCChhhhhhHHHH--
Q 019512 116 IASDYLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRHQS--VAR-YVLESQHMKKFFDYIQLPNFDIAADAAAT-- 188 (340)
Q Consensus 116 p~v~Yl~~--~peil~~L~~gY~~~dial~~G~mLRecik~e~--la~-~iL~~~~f~~fF~yv~~~~FdiasDAf~t-- 188 (340)
.|.++|++ .||++.-|+. -+|.|+.|.- +-| -+|.=-.+++-|+++--..=|+..++..+
T Consensus 118 ~TLRFLckLkE~ELlepl~p-------------~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~ 184 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMP-------------SIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ 184 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc
Confidence 67889988 5999988875 3577776652 101 11111123333444433333444443332
Q ss_pred --------HHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHH-HHHHhccc--cchHHHHHhhcChhh
Q 019512 189 --------FKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL-LGDILLDR--SNSVVMTRYVSSREN 257 (340)
Q Consensus 189 --------fkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL-L~elLldr--~N~~vm~~Yi~~~~N 257 (340)
|--|++.-+..+-.||..|.|.+ ..+|. +|.+ +-|++-+- .|-.--.| .
T Consensus 185 DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi-~~~~~-------------~LqlViVE~Irkv~~~~p~~~~~------~ 244 (948)
T KOG1058|consen 185 DPSCKRNAFLMLFTTDPERALNYLLSNIDQI-PSFND-------------SLQLVIVELIRKVCLANPAEKAR------Y 244 (948)
T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHhhHhhc-cCccH-------------HHHHHHHHHHHHHHhcCHHHhhH------H
Confidence 44567777888888888887763 22331 1111 12222111 11222222 3
Q ss_pred HHHHHHHhccCccccchhhhhhhhhhhcCCCCChh----HHHHHH---HhHHHHHHH
Q 019512 258 LRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPD----IVSILV---ANRSKLLRL 307 (340)
Q Consensus 258 LkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~----I~~IL~---~Nr~kLi~f 307 (340)
.+.+|++|.+.|..+.|||---.=..-.+|.-=++ +.+.+. .|+.|||--
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvl 301 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVL 301 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhH
Confidence 68999999999999999997655444445543222 222222 366666643
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=47.23 E-value=3.2e+02 Score=27.64 Aligned_cols=118 Identities=18% Similarity=0.311 Sum_probs=80.2
Q ss_pred hhHhhhhhc-cCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccc
Q 019512 166 HMKKFFDYI-QLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244 (340)
Q Consensus 166 ~f~~fF~yv-~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N 244 (340)
-+..+..|+ ..+..++..++..+...+-.++ ...++|+++..- +++..++..+...++--+.+++.+-..
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~--------~~~~~~~v~~l~-~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKF--------PPDAEWYVDTLL-KLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--------GSSHHHHHHHHH-HHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc--------CchHHHHHHHHH-HhhhhccccccchHHHHHHHHhhcChh
Confidence 356777888 6668888888888888775555 556778887775 787765555577888888888765443
Q ss_pred h-----HHHHHh---hcChhhHHHHHHHhccCccccch--hhhhhhhhhhcCCCCChh
Q 019512 245 S-----VVMTRY---VSSRENLRILMNLLRESSKSIQI--EAFHVFKLFAANQNKPPD 292 (340)
Q Consensus 245 ~-----~vm~~Y---i~~~~NLkliM~lL~d~sk~Iq~--EAFhvFKvFVANP~K~~~ 292 (340)
. ..+.++ +++++-++.+..++.+-+..+-- -+-.++..++.++...++
T Consensus 411 ~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (526)
T PF01602_consen 411 LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP 468 (526)
T ss_dssp THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH
Confidence 2 223333 56677778888888776655433 577788888888766555
No 30
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=43.61 E-value=1.8e+02 Score=32.26 Aligned_cols=126 Identities=20% Similarity=0.271 Sum_probs=77.9
Q ss_pred HHHHH-HHhHHHHHHHHhcchhhHhhhhhcc----CCChhhhhhHHHHHHHHHhhChHHHHHHHH------------hcH
Q 019512 146 AMLRE-CIRHQSVARYVLESQHMKKFFDYIQ----LPNFDIAADAAATFKELLTRHKSTVAEFLS------------KNY 208 (340)
Q Consensus 146 ~mLRe-cik~e~la~~iL~~~~f~~fF~yv~----~~~FdiasDAf~tfkellt~hk~lvaefl~------------~ny 208 (340)
.+||| --|+-.+|--|++- |+.|-.|.+ +.+|-|.|=.+....-=+.||....++-.. ..|
T Consensus 171 RvLred~~ks~~l~tnI~~i--F~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~ 248 (708)
T PF05804_consen 171 RVLREDWKKSVELATNIIYI--FFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDY 248 (708)
T ss_pred HHHHHHhhhhHHHHHHHHHH--HHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhH
Confidence 45555 34444455444432 444444443 467777777777777777777766655443 236
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhh
Q 019512 209 DWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHV 279 (340)
Q Consensus 209 d~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhv 279 (340)
+.....|+ .|+...+=+-+ -++.+|..+-.|..+-.-|. +..-+..+..+|.+.+..+..-+--.
T Consensus 249 ~~~~kk~~-~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~----~~~iV~~Lv~~Ldr~n~ellil~v~f 313 (708)
T PF05804_consen 249 EKELKKLQ-TLIRKQEQLLR-VAFYLLLNLAEDPRVELKMV----NKGIVSLLVKCLDRENEELLILAVTF 313 (708)
T ss_pred HHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhcChHHHHHHH----hcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 77777886 66666554444 67778888888887777775 36667777777776655555544433
No 31
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=42.22 E-value=92 Score=26.10 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=47.6
Q ss_pred CCCCCCchHHHHHHHHHHHhhc----hHHHHHhhC---CCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHH
Q 019512 58 NSESEPVSEACAQLTAEFFREN----TLRLLITCL---PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDI 130 (340)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~d----ll~~Li~~l---~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~ 130 (340)
+++..|.+....+||+..|+++ ++..|...| +.=.+-..-.+-.+...|++ .+..-.++++..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~---nG~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLK---NGSERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHH---HS-HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHhh
Confidence 4455677888999999988853 344555555 33333333344445555555 2222346667667777777
Q ss_pred HHHhccCch-hhhhHHHHHHHHH
Q 019512 131 LIAGYENTD-MALHYGAMLRECI 152 (340)
Q Consensus 131 L~~gY~~~d-ial~~G~mLReci 152 (340)
| ..|..+| -.-..|.-+|+-+
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 7 3343322 2344555566544
No 32
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=42.02 E-value=62 Score=29.38 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=12.0
Q ss_pred hhhh--HHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc
Q 019512 181 IAAD--AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240 (340)
Q Consensus 181 iasD--Af~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLl 240 (340)
+..| +..++.+++..+++++...-..+.+.|+ .+|...+ -..+-|++|+.|..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i-----~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFI-----ELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHH-----HHHHHcC--CChHHHHHHhhhcc
Confidence 4455 8999999999999999998877777666 3454433 22335666766653
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.54 E-value=57 Score=24.50 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCcc-ccchhh
Q 019512 211 FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSK-SIQIEA 276 (340)
Q Consensus 211 Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk-~Iq~EA 276 (340)
....+- .++.++|..+|++++.-||.+ .+++-+..+..+|.+.+. .++.+|
T Consensus 32 ~~~~L~-~~l~d~~~~vr~~a~~aL~~i--------------~~~~~~~~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 32 AIPALI-ELLKDEDPMVRRAAARALGRI--------------GDPEAIPALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp HHHHHH-HHHTSSSHHHHHHHHHHHHCC--------------HHHHTHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCCcHHHHHHH
Confidence 445553 788999999999999999976 456667777777766443 335544
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=2.2e+02 Score=30.51 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--Cchh---------
Q 019512 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDM--------- 140 (340)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~di--------- 140 (340)
++.+...++++.|+..|..=||.+||.++-..+|+.. ++..--+.||.... ++.-|+.-.. +.++
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 4577888999999999999999999999999998875 44444477776643 3333322222 2222
Q ss_pred -hhhHHHHHHHHHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHH
Q 019512 141 -ALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFK 190 (340)
Q Consensus 141 -al~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfk 190 (340)
.+-.|.+..+-=. +.++.+|=+.+...++-..=...|=||..-|+....
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 2222322221111 455666666666666554444556666666655443
No 35
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.94 E-value=6.8e+02 Score=29.07 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=84.6
Q ss_pred CCCChhhhhcHHHHHHHHhhhhccCc-cch---hHH----hhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHHH
Q 019512 89 PKLNLEARKDATQVVANLQRQQVHSK-LIA---SDY----LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARY 160 (340)
Q Consensus 89 ~~L~fE~rKdv~~If~~llr~~~~~~-~p~---v~Y----l~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~ 160 (340)
...++-.|..++.-|-|...++-.++ .|. --| -.=+-.|+++++++.+ -+-...|.+| +.
T Consensus 48 d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~--~iRvql~~~l----------~~ 115 (1010)
T KOG1991|consen 48 DGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPE--LIRVQLTACL----------NT 115 (1010)
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCch--HHHHHHHHHH----------HH
Confidence 34555556666666666665553333 222 111 1114567777776632 1112222222 33
Q ss_pred Hhcch---hhHhhhhhc----cCCChhhhhhHHHHHHHHHhhCh-----------HHHHHHHHhcHHHHHHHHHHhhccC
Q 019512 161 VLESQ---HMKKFFDYI----QLPNFDIAADAAATFKELLTRHK-----------STVAEFLSKNYDWFFAEYNSKLLES 222 (340)
Q Consensus 161 iL~~~---~f~~fF~yv----~~~~FdiasDAf~tfkellt~hk-----------~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (340)
|++.+ ..|.+++++ +.+.=-.-=-|.-.+.+|...|+ .++.+++- ..-+..+ +|+..
T Consensus 116 Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP----~il~~~~-~ll~~ 190 (1010)
T KOG1991|consen 116 IIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFP----DILQIFN-GLLSQ 190 (1010)
T ss_pred HHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH----HHHHHHH-hhccc
Confidence 44443 346666655 33322222256777777777666 33444443 3334455 89999
Q ss_pred CCcchhhhhHHHHHHHhc--cccchHHHHHhhcChhhHHHHHHHhcc
Q 019512 223 SNYITRRQAVKLLGDILL--DRSNSVVMTRYVSSRENLRILMNLLRE 267 (340)
Q Consensus 223 ~NYVtkRQSLKLL~elLl--dr~N~~vm~~Yi~~~~NLkliM~lL~d 267 (340)
+|| ||.+++--||- --..+--.-++..+++.+---|.++..
T Consensus 191 ~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~ 233 (1010)
T KOG1991|consen 191 ESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLS 233 (1010)
T ss_pred cch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHH
Confidence 977 66666665553 233444556778888888888887653
No 36
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.70 E-value=2.6e+02 Score=24.22 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 019512 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (340)
Q Consensus 176 ~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elL 239 (340)
....++...+...+|.++..+..+ ...+. + ...+..+ ...|.|+++=||.+++.+|+-+-
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~-~~v~~-~-~~~v~~i-~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGL-EAVLS-H-PDSVNLI-ALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHH-HHHHC-S-SSHHHHH-HHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHH-HHHHc-C-cHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH
Confidence 356677888888888888766542 23333 2 2334555 47888999999999999998663
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=36.82 E-value=4.4e+02 Score=27.52 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=32.2
Q ss_pred hhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccc--cchhhhhh
Q 019512 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKS--IQIEAFHV 279 (340)
Q Consensus 229 RQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~--Iq~EAFhv 279 (340)
..++..|+++|.-+....+ |+... .++.++.+|+..+-+ +|+++..+
T Consensus 162 ~~~v~~L~~LL~~~~~R~~---f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 162 QTAARCLQMLLRVDEYRFA---FVLAD-GVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred HHHHHHHHHHhCCchHHHH---HHHcc-CHHHHHHHHhhccccHHHHHHHHHH
Confidence 3467789999977765544 55554 899999999876644 45665443
No 38
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=36.69 E-value=3.2e+02 Score=29.89 Aligned_cols=205 Identities=20% Similarity=0.300 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhccCCchhhhhHHHHHH--HHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhhCCCCC
Q 019512 15 IVRQTRDLIIYANRSADVRESKREDKMAE--LCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLN 92 (340)
Q Consensus 15 lVr~l~e~l~~L~~~~~~~~~K~~~k~eE--isK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~ 92 (340)
+|..|.|.|..=....+ ...+.+ .++| ++=.+.|+=..++..+|.+|+.=.+-.--+...-.++|..|| +-|..+
T Consensus 374 lv~~L~eyLp~s~~~~~-~q~~~q-rADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~Li-~~P~~p 450 (617)
T PF15087_consen 374 LVQTLHEYLPESRSKNG-LQNKSQ-RADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVILI-CEPQIP 450 (617)
T ss_pred HHHHHHHhcccCcCccc-cccccc-hHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHHh-cCcccc
Confidence 47777776653221111 111111 2344 667777888889999998887432222222233334443332 334443
Q ss_pred -----hhhhhcHHHHHHHHhhhhccCcc--chhHHhhhcHhHHHHH-HHhc-----cCchhhhhHHHHHHHHHhHHHHHH
Q 019512 93 -----LEARKDATQVVANLQRQQVHSKL--IASDYLEANIDLLDIL-IAGY-----ENTDMALHYGAMLRECIRHQSVAR 159 (340)
Q Consensus 93 -----fE~rKdv~~If~~llr~~~~~~~--p~v~Yl~~~peil~~L-~~gY-----~~~dial~~G~mLRecik~e~la~ 159 (340)
|+. +-+++ -.-..+... -..+|+-+-..+|.-+ +-|- .+.+-.++.|-|+|..=-|+
T Consensus 451 ~~~~~~~~-~~~~~-----~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~p---- 520 (617)
T PF15087_consen 451 KSCPPFDI-QLVAD-----SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSHP---- 520 (617)
T ss_pred ccCCcccc-ccccc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcCC----
Confidence 110 10000 000000000 0134443333332222 1111 23455566777777443333
Q ss_pred HHhcchhhHhhhhhccC-------CC---hhhhhhHHHHHHH---HHh--hChHHHHHHHHhcHHHHHHHHHHhh--ccC
Q 019512 160 YVLESQHMKKFFDYIQL-------PN---FDIAADAAATFKE---LLT--RHKSTVAEFLSKNYDWFFAEYNSKL--LES 222 (340)
Q Consensus 160 ~iL~~~~f~~fF~yv~~-------~~---FdiasDAf~tfke---llt--~hk~lvaefl~~nyd~Ff~~yn~~L--l~s 222 (340)
.+-.|..|+-. +. +=-.++|---|+- |.+ .|.+-.|+|+.+||.+=|.-|- +. ++.
T Consensus 521 ------~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI-~~p~lek 593 (617)
T PF15087_consen 521 ------PLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFI-KMPCLEK 593 (617)
T ss_pred ------cHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeee-cchhhHh
Confidence 33344444421 11 2223455444433 333 6777899999999988664443 32 222
Q ss_pred ---CCcchhhhhHHHHHHHh
Q 019512 223 ---SNYITRRQAVKLLGDIL 239 (340)
Q Consensus 223 ---~NYVtkRQSLKLL~elL 239 (340)
.-|=..+..++|++|+|
T Consensus 594 KLP~~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 594 KLPPCYPITQPTLQLIHEVL 613 (617)
T ss_pred hCCCCCCCchHHHHHHHHHH
Confidence 67888899999999987
No 39
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.05 E-value=2.9e+02 Score=23.89 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHhh-----chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCch
Q 019512 65 SEACAQLTAEFFRE-----NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD 139 (340)
Q Consensus 65 ~e~~~qLa~ei~~~-----dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~d 139 (340)
--...+||+..+.+ .++..|...|..=+--.+-.+-.|...|.+. +....+.++..|..++..+...-.-||
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 35567777777776 4566777777765555556677788887774 345568889999999998755332233
Q ss_pred --hhhhHHHHHHHHH
Q 019512 140 --MALHYGAMLRECI 152 (340)
Q Consensus 140 --ial~~G~mLReci 152 (340)
-.-.-|...|+-+
T Consensus 96 p~~Gd~~~~~VR~~A 110 (122)
T cd03572 96 PLKGDSLNEKVREEA 110 (122)
T ss_pred cccCcchhHHHHHHH
Confidence 4556677888765
No 40
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.35 E-value=1.3e+02 Score=30.79 Aligned_cols=124 Identities=24% Similarity=0.344 Sum_probs=82.1
Q ss_pred HhcchhhHhhhhhcc---CCChhhhh--hHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHH
Q 019512 161 VLESQHMKKFFDYIQ---LPNFDIAA--DAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLL 235 (340)
Q Consensus 161 iL~~~~f~~fF~yv~---~~~Fdias--DAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL 235 (340)
+++.|.+++||+--+ ..-||..+ |-...|+..+...+..| .+||- .|.+|-++|+++-+..||--++.+|
T Consensus 99 ~~fgpd~y~f~~~de~~~~~y~d~~~k~~f~~vf~~~~~~~~~~v----~~~~~-LfleyLgkl~Q~i~~lTrlfav~cl 173 (432)
T COG5231 99 LLFGPDIYSFYRSDEMLTKMYEDKKHKKEFLSVFKQMLKDNTSYV----ESNYL-LFLEYLGKLSQLIDFLTRLFAVSCL 173 (432)
T ss_pred HhcChHHHHHHHhCHHHHHHHhhhHHHHHHHHHHHHHccCchHHH----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777775222 12344443 44455666665555444 45776 4556668999999999999999999
Q ss_pred HHHhccccchHHHHHhhcChhh--HHHHHHHhccCc--cccchhhhhhhhhhhcCCCCChhHH
Q 019512 236 GDILLDRSNSVVMTRYVSSREN--LRILMNLLRESS--KSIQIEAFHVFKLFAANQNKPPDIV 294 (340)
Q Consensus 236 ~elLldr~N~~vm~~Yi~~~~N--LkliM~lL~d~s--k~Iq~EAFhvFKvFVANP~K~~~I~ 294 (340)
+++..+++...+. |. +| =..+|-+|+.-- +-+|+-+.-+|=++--||.=.+.|.
T Consensus 174 ~~l~~~~e~R~i~--wa---entcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 174 SNLEFDVEKRKIE--WA---ENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred hhhhhhHHHHHHH--HH---HhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876654 22 44 345666666544 4567777777777777777665443
No 41
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.57 E-value=7.6e+02 Score=28.02 Aligned_cols=147 Identities=14% Similarity=0.241 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhhccCCCCCCchHHHHHHH-HHHHhhch---HHHHHhhCCCCChhhh--------------hcHHHHHH
Q 019512 43 ELCKNIRELKSILYGNSESEPVSEACAQLT-AEFFRENT---LRLLITCLPKLNLEAR--------------KDATQVVA 104 (340)
Q Consensus 43 EisK~L~~mK~il~G~~e~ep~~e~~~qLa-~ei~~~dl---l~~Li~~l~~L~fE~r--------------Kdv~~If~ 104 (340)
=+++++.++|.=+-.++-. ....++-.|+ -+++..|. -..++..+...-|-.+ -|+..+-+
T Consensus 33 fis~~l~e~r~E~k~~d~~-~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~t 111 (877)
T KOG1059|consen 33 FISQCLEEIRQELKSDDLN-VKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTT 111 (877)
T ss_pred HHHHHHHHHHHHhhchhhh-hhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHH
Confidence 4788888888766654433 2233443343 35554442 2344444544444322 25666677
Q ss_pred HHhhhhcc--------------CccchhHHhhh--cHhHHHHHHHhccCchh-hhhHHHHHHHHHhHHHHHHHHhcchhh
Q 019512 105 NLQRQQVH--------------SKLIASDYLEA--NIDLLDILIAGYENTDM-ALHYGAMLRECIRHQSVARYVLESQHM 167 (340)
Q Consensus 105 ~llr~~~~--------------~~~p~v~Yl~~--~peil~~L~~gY~~~di-al~~G~mLRecik~e~la~~iL~~~~f 167 (340)
+++|--.. +++.|.+ |.+ -+|++.+|-+. .|=+ -=..+.|.|.|+||+...| ++|
T Consensus 112 n~~rkdl~S~n~ye~giAL~GLS~fvTpd-LARDLa~Dv~tLL~ss--kpYvRKkAIl~lykvFLkYPeAlr-----~~F 183 (877)
T KOG1059|consen 112 NLLRKDLNSSNVYEVGLALSGLSCIVTPD-LARDLADDVFTLLNSS--KPYVRKKAILLLYKVFLKYPEALR-----PCF 183 (877)
T ss_pred HHHHHHhccCccchhhheecccccccCch-hhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhhHhHh-----hhH
Confidence 77763211 1122222 222 24555444211 1100 1135788999999998887 899
Q ss_pred HhhhhhccCCChhhhhhHHHHHHHHHhhChH
Q 019512 168 KKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (340)
Q Consensus 168 ~~fF~yv~~~~FdiasDAf~tfkellt~hk~ 198 (340)
-++-+-++-|.=.|.|-|-..+=||=+++|+
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999984
No 42
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=32.94 E-value=1.4e+02 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHh
Q 019512 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQ 107 (340)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~ll 107 (340)
-.+.+...+.+..|+..|..-+.+.++.++-...++-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566778999999999999999999999888777763
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=32.43 E-value=3.7e+02 Score=24.09 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=82.4
Q ss_pred cCCChhhhhhHHHHHHHHHhhC--hHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhh
Q 019512 175 QLPNFDIAADAAATFKELLTRH--KSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYV 252 (340)
Q Consensus 175 ~~~~FdiasDAf~tfkellt~h--k~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi 252 (340)
...+.+.--+|+..++.++..| ......|+. .+..+...+. ..+.+.+--.-+.++.+++++...=.+. |..|
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~-~l~~~~~~i~-~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~- 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVE-CLRQLLDAII-KQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY- 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHH-HHH---HHHH-H-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHH-HHHHhHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH-
Confidence 4577888899999999999988 222222222 2223344554 6777888888889999888887332222 4444
Q ss_pred cChhhHHHHHHHhccCccccchhhhhhhhhhhcCCC-CChhHHHHHHH--------hHHHHHHHHhcCCCCC--cccchH
Q 019512 253 SSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQN-KPPDIVSILVA--------NRSKLLRLFADFKTDK--EDEQFE 321 (340)
Q Consensus 253 ~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~-K~~~I~~IL~~--------Nr~kLi~fl~~f~~d~--~D~qF~ 321 (340)
-+.-+-.++..+.|..+.|+-.|-..+.-++.+-. .+.-+..++.. -|...+.|+...-..- +...+.
T Consensus 92 -~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 92 -ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp -HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred -HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 33455677888889888999999999998888766 33332454443 3455666666653322 234444
Q ss_pred HHH--HHHHHHHhc
Q 019512 322 ADK--AQVVKEIAG 333 (340)
Q Consensus 322 dEK--~~li~~I~~ 333 (340)
... ..+++.|..
T Consensus 171 ~~~~~~~l~~~l~~ 184 (228)
T PF12348_consen 171 KSAFLKQLVKALVK 184 (228)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 444 345555543
No 44
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=30.44 E-value=1.4e+02 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchH
Q 019512 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTL 81 (340)
Q Consensus 41 ~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll 81 (340)
.+|+.|.|..|-.-+-++.=..|.-+...+|++++-+.|+-
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~ 107 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYD 107 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 58999999999888876555567778889999988777653
No 45
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=29.91 E-value=1.4e+02 Score=26.85 Aligned_cols=64 Identities=19% Similarity=0.347 Sum_probs=37.9
Q ss_pred HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhc---HHHHHHHHHHhhccCCCc
Q 019512 156 SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKN---YDWFFAEYNSKLLESSNY 225 (340)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~n---yd~Ff~~yn~~Ll~s~NY 225 (340)
...+|+.+|+.|+++++|++.+.|.=.-.-+.+..|.- .+.+||.++ -..+++.+| .++.-+++
T Consensus 23 i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~-----~l~~yL~~~gldv~~~i~~i~-~~l~~~~~ 89 (179)
T PF06757_consen 23 IVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVK-----ALLDYLESAGLDVYYYINQIN-DLLGLPPL 89 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHH-----HHHHHHHHCCCCHHHHHHHHH-HHHcCCcC
Confidence 45668899999999999998877653332222222221 233666642 333566666 66655555
No 46
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=29.27 E-value=55 Score=31.10 Aligned_cols=47 Identities=19% Similarity=0.455 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHH---HHHHhcHHHHHH
Q 019512 144 YGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---EFLSKNYDWFFA 213 (340)
Q Consensus 144 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lva---efl~~nyd~Ff~ 213 (340)
.=.+||-|+-+++-.|.+||.. +-+++++++.++. ++|..++..||.
T Consensus 35 Ilg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 35 ILGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 3357899999999999999984 3456667776666 555677777766
No 47
>KOG3666 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.92 E-value=9.1e+02 Score=27.50 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhhC-CCCChhhhhcHHHHHHHHhh--hhccCccchh
Q 019512 42 AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCL-PKLNLEARKDATQVVANLQR--QQVHSKLIAS 118 (340)
Q Consensus 42 eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l-~~L~fE~rKdv~~If~~llr--~~~~~~~p~v 118 (340)
+-.++-+..||..+-|..|-+|. ||-.+=.+..++..+...+ ..+-|..|-.-.++-+-|+. ..+.+--...
T Consensus 666 A~ft~GIlmMktTlVG~IEidPK-----qLLEdGirkeLvk~ia~a~~~Glif~p~~kps~l~~kL~~l~~tIEg~RrSF 740 (1141)
T KOG3666|consen 666 AIFTEGILMMKTTLVGIIEVDPK-----QLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPKLKELGATIEGFRRSF 740 (1141)
T ss_pred HHHHHHHHHHHHhheeEEeeCHH-----HHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHHHHHHHHHHHhhH
Confidence 44678889999999999998886 3333333222332222222 13455555555666664442 2222222336
Q ss_pred HHhhhc--HhHHHHHHH---hccCchhhhhHHHHHHHHHhHHHHHHHHhcch---------------hhHhhh---hhcc
Q 019512 119 DYLEAN--IDLLDILIA---GYENTDMALHYGAMLRECIRHQSVARYVLESQ---------------HMKKFF---DYIQ 175 (340)
Q Consensus 119 ~Yl~~~--peil~~L~~---gY~~~dial~~G~mLRecik~e~la~~iL~~~---------------~f~~fF---~yv~ 175 (340)
+|++.. -+=+.++.. -.=+-++.=-|+..+|--+..+.- +-.|. .+-.++ -.++
T Consensus 741 eYi~DY~n~~Gl~iw~ee~~riinynve~EcnAFlR~k~q~~qs---~~qs~~ipip~f~p~d~s~~fIgrL~~eilriT 817 (1141)
T KOG3666|consen 741 EYIQDYVNIYGLKIWQEEVSRIINYNVEQECNAFLRTKIQDWQS---MYQSTHIPIPKFTPVDESVTFIGRLCREILRIT 817 (1141)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH---hhhccccCCCCCCCCCchhHHHHHHHHHHHhcC
Confidence 677652 222333321 111233444566777766554430 01110 011222 1334
Q ss_pred CCChhhhhhHHHHHHHHHhhChHHHH
Q 019512 176 LPNFDIAADAAATFKELLTRHKSTVA 201 (340)
Q Consensus 176 ~~~FdiasDAf~tfkellt~hk~lva 201 (340)
.|-=.+=+|...|..|.-+ |+.+.|
T Consensus 818 dPK~t~F~d~~~tWyd~K~-hqeVLs 842 (1141)
T KOG3666|consen 818 DPKMTCFIDQLNTWYDMKT-HQEVLS 842 (1141)
T ss_pred CchhhHHHHhhhhHHHHHH-HHHHHH
Confidence 5555555677777777666 655544
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.90 E-value=1.9e+02 Score=27.97 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHHHhhChHHHHHHHHhc---HHH-HHHHHHHhhccCCCcchhhhhHHHHHHHhcccc-chHHHHHhhcC
Q 019512 180 DIAADAAATFKELLTRHKSTVAEFLSKN---YDW-FFAEYNSKLLESSNYITRRQAVKLLGDILLDRS-NSVVMTRYVSS 254 (340)
Q Consensus 180 diasDAf~tfkellt~hk~lvaefl~~n---yd~-Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~-N~~vm~~Yi~~ 254 (340)
.|+.|..+.++.+-..-++-=.+.+..+ |.. |..-.+ ++ ++|-=|.+..|-+++|++.+.. ..+.+..+-..
T Consensus 25 ~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~-~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~ 101 (312)
T PF03224_consen 25 LISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLN-KL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQ 101 (312)
T ss_dssp SS-HHHHHHHHHHHHHHH-------------------HHHH-HH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHH-Hc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4666777777776655544444566644 333 333332 33 6789999999999999998875 55566555553
Q ss_pred hh--hHHHHHHHhccCccccchhhhhhhhhhhcCCCC-Chh-HHHHHHHhHHHHHHHHhc
Q 019512 255 RE--NLRILMNLLRESSKSIQIEAFHVFKLFAANQNK-PPD-IVSILVANRSKLLRLFAD 310 (340)
Q Consensus 255 ~~--NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K-~~~-I~~IL~~Nr~kLi~fl~~ 310 (340)
++ -....+.+|..+..-|+.-|.+++-.+.+...+ +.. +.++| ..++.++.+
T Consensus 102 ~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l----~~ll~~L~~ 157 (312)
T PF03224_consen 102 DDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL----PKLLQWLSS 157 (312)
T ss_dssp TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH----HHHHHHHH-
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH----HHHHHHHHH
Confidence 33 588889999999999999999999887774443 433 34454 677888887
No 49
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=26.31 E-value=93 Score=34.59 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=57.1
Q ss_pred CCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHH------HHH--HH
Q 019512 90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQS------VAR--YV 161 (340)
Q Consensus 90 ~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~------la~--~i 161 (340)
.+.|+ ||.+++.-..+= ...+...++|+.- --|+-.|++-..-|-..+.||++|-||+|-.+ +|+ -+
T Consensus 325 sl~fn-RKecA~~l~~l~---~~f~~~p~eyliv-EtIfgell~LP~~~~~~iyy~slLiElCK~~P~~lpqV~aqa~r~ 399 (759)
T KOG1104|consen 325 SLEFN-RKECARQLLSLP---VKFKAIPIEYLIV-ETIFGELLRLPTPPYKTIYYTSLLIELCKLQPKALPQVLAQAVRI 399 (759)
T ss_pred Hhhhh-HHHHHHHHHcCc---ccccCccHHHHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 56777 888887544432 2222234677543 33566667777788889999999999998763 333 12
Q ss_pred hcc-------hhhHhhhhhc--cCCChhh
Q 019512 162 LES-------QHMKKFFDYI--QLPNFDI 181 (340)
Q Consensus 162 L~~-------~~f~~fF~yv--~~~~Fdi 181 (340)
+|. +|+.+|.+|+ +++||.-
T Consensus 400 lY~rldsm~~~c~dR~idWFShHLSNF~F 428 (759)
T KOG1104|consen 400 LYMRLDSMDTECFDRFIDWFSHHLSNFQF 428 (759)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhccCcc
Confidence 332 4888999987 5777754
No 50
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=26.24 E-value=6.7e+02 Score=25.10 Aligned_cols=113 Identities=15% Similarity=0.243 Sum_probs=65.0
Q ss_pred HHHHHHHhhccC-CCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc----
Q 019512 211 FFAEYNSKLLES-SNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA---- 285 (340)
Q Consensus 211 Ff~~yn~~Ll~s-~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA---- 285 (340)
|.++.. .|+.+ ++|+.==|.=-.+--||-++. ...+=--.+=|++.-..+++....++.+||..+|.+|-
T Consensus 233 ~~~~L~-~mi~~~~~~~~a~~iW~~~i~LL~~~~----~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 233 YCERLK-EMIKSKDEYKLAMQIWSVVILLLGSSR----LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHH-HHHhCcCCcchHHHHHHHHHHHhCCch----hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 444553 67766 777643333222222331111 22333334557888888999999999999999998765
Q ss_pred CCCCChhHHHHHHHhHHHHHHHHhcCCCCCcccchHHHHHHHHHHHhcC
Q 019512 286 NQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGL 334 (340)
Q Consensus 286 NP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~~D~qF~dEK~~li~~I~~L 334 (340)
|+..+++..+.|.+ -+...+.....+.+-.+=+.+++..+-+|
T Consensus 308 ~~~~~~k~l~lL~~------Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 308 NELTSPKRLKLLCQ------PLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred CccccHHHHHHHHH------HHHHHhCccccccccHHHHHHHHHHHhch
Confidence 33344444444332 23334444334544446688888887765
No 51
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=25.57 E-value=3.2e+02 Score=31.31 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=48.0
Q ss_pred HHHHHhcchhhHhhhh---hccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCC
Q 019512 157 VARYVLESQHMKKFFD---YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN 224 (340)
Q Consensus 157 la~~iL~~~~f~~fF~---yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~N 224 (340)
++.+++.+..+|..-. +--++-|+|+=-+..-|.++=..|++ +|+++|.+.|..++. +|++-.|
T Consensus 175 l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~~m~~F~-klls~~~ 241 (947)
T COG5657 175 LCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDKFMEHFC-KLLSYSN 241 (947)
T ss_pred HHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHH-HHHhhcc
Confidence 6778888888888765 33456788865666666666666665 999999999999995 8887444
No 52
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.27 E-value=4e+02 Score=29.28 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=55.1
Q ss_pred hhHhhhhhccCCChhhhhhHHHHHHHHHhhCh------HHHHHHHHh---------------cHHHHHHHHHHhhccCCC
Q 019512 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHK------STVAEFLSK---------------NYDWFFAEYNSKLLESSN 224 (340)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~tfkellt~hk------~lvaefl~~---------------nyd~Ff~~yn~~Ll~s~N 224 (340)
.+..+|.+++.+.=.+.=|+=+-++++|+.-+ .+|-.|+.. +--.||...| ..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~-~~~~~~~ 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLN-DYFVKPS 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHH-HHHcCch
Confidence 46788888899999999999999999998764 244445543 2356899998 6666654
Q ss_pred cchhhhhHHHHHHHhc
Q 019512 225 YITRRQAVKLLGDILL 240 (340)
Q Consensus 225 YVtkRQSLKLL~elLl 240 (340)
+|-++|-|||.++-
T Consensus 84 --~Rl~~L~Ll~~~v~ 97 (668)
T PF04388_consen 84 --YRLQALTLLGHFVR 97 (668)
T ss_pred --hHHHHHHHHHHHHh
Confidence 78899999999994
No 53
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=25.19 E-value=4.2e+02 Score=25.13 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=66.1
Q ss_pred cCCChhhhhhHHHHHHHHHh--hChH---HHHHHHHhcHHHHHHHHHHhhccCC--Cc--chhhh-hHHHHHHHh--ccc
Q 019512 175 QLPNFDIAADAAATFKELLT--RHKS---TVAEFLSKNYDWFFAEYNSKLLESS--NY--ITRRQ-AVKLLGDIL--LDR 242 (340)
Q Consensus 175 ~~~~FdiasDAf~tfkellt--~hk~---lvaefl~~nyd~Ff~~yn~~Ll~s~--NY--VtkRQ-SLKLL~elL--ldr 242 (340)
+.+.|+-+.++|..+=..|. +++. +-.++|....+. +.+. .. +|||= .|.++-.=+ .++
T Consensus 110 HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~---------i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~ 180 (255)
T PF10350_consen 110 HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEA---------IESKGQQKLSITRRSAGLPFLILAILSAEP 180 (255)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHH---------HhcccccccccccccCcHHHHHHHHHhcCC
Confidence 47899999999999988887 3343 445666655443 3333 34 78884 355543333 222
Q ss_pred cchHHHHHhhcChhhHHHHHHHhccCcc--------ccchhhhhhhhhhhcCCCCChhHHHHHH
Q 019512 243 SNSVVMTRYVSSRENLRILMNLLRESSK--------SIQIEAFHVFKLFAANQNKPPDIVSILV 298 (340)
Q Consensus 243 ~N~~vm~~Yi~~~~NLkliM~lL~d~sk--------~Iq~EAFhvFKvFVANP~K~~~I~~IL~ 298 (340)
.+...+.++ -++.++.+-+.+.. .-|.-|+||.|..+.+.+=+..+...+.
T Consensus 181 ~~~~~ll~~-----~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~ 239 (255)
T PF10350_consen 181 SNSRPLLHR-----TMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIE 239 (255)
T ss_pred CcchhHHHH-----HHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 221111111 12233333344433 3799999999999999888888777544
No 54
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.04 E-value=2e+02 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.6
Q ss_pred CCCCCCCC----CCChHHHHHHHHHHHHHhh
Q 019512 1 MKGLFKSK----PRTPVDIVRQTRDLIIYAN 27 (340)
Q Consensus 1 M~~lF~~~----~KtP~elVr~l~e~l~~L~ 27 (340)
|..||+++ +.|+.|-++.+++.+..|+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~ 31 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD 31 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77899754 3466777777777776654
No 55
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.73 E-value=9.3e+02 Score=25.91 Aligned_cols=200 Identities=22% Similarity=0.236 Sum_probs=120.6
Q ss_pred hCCCCChhhhhcHHHHHHHHhhhh----ccCccchhHHh-hh-cHhHHHHHHHhcc--------CchhhhhHHHHHHHHH
Q 019512 87 CLPKLNLEARKDATQVVANLQRQQ----VHSKLIASDYL-EA-NIDLLDILIAGYE--------NTDMALHYGAMLRECI 152 (340)
Q Consensus 87 ~l~~L~fE~rKdv~~If~~llr~~----~~~~~p~v~Yl-~~-~peil~~L~~gY~--------~~dial~~G~mLReci 152 (340)
.-+.+.||+---.+.|=++..-+. ..+..|..-.| .. ++++-..-+..-. -.|..+.||.
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~------ 195 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA------ 195 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc------
Confidence 346677887777777766543211 23333432222 22 4555444433222 2233333333
Q ss_pred hHHHHHHHHhcch-------hhHhhhhhcc----CCChhhhhhHHHHHHHHHhhChHHHH-------HHHHhcHHH----
Q 019512 153 RHQSVARYVLESQ-------HMKKFFDYIQ----LPNFDIAADAAATFKELLTRHKSTVA-------EFLSKNYDW---- 210 (340)
Q Consensus 153 k~e~la~~iL~~~-------~f~~fF~yv~----~~~FdiasDAf~tfkellt~hk~lva-------efl~~nyd~---- 210 (340)
-+.|+..+..+. -.|-+..... .|.|+..+-++.++-.++-..-.-|- .||+++-..
T Consensus 196 -l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~ 274 (514)
T KOG0166|consen 196 -LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQM 274 (514)
T ss_pred -hHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 345555555443 3577777664 46899999999998887765443332 566643222
Q ss_pred -----HHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhc-cCccccchhhhhhhhhhh
Q 019512 211 -----FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR-ESSKSIQIEAFHVFKLFA 284 (340)
Q Consensus 211 -----Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~-d~sk~Iq~EAFhvFKvFV 284 (340)
+..... .||.+..+-++-=+|+.+|-+.. -...-|.-|-+..-|..++++|+ ++.++|.=||.-+--=..
T Consensus 275 vi~~gvv~~LV-~lL~~~~~~v~~PaLRaiGNIvt---G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 275 VIDAGVVPRLV-DLLGHSSPKVVTPALRAIGNIVT---GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred HHHccchHHHH-HHHcCCCcccccHHHhhccceee---ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 233454 78899998888889999998653 34555677888999999999999 777779888875444333
Q ss_pred cCCCCChhHHHHHHH
Q 019512 285 ANQNKPPDIVSILVA 299 (340)
Q Consensus 285 ANP~K~~~I~~IL~~ 299 (340)
| ..+..|..++-.
T Consensus 351 A--G~~~qiqaVida 363 (514)
T KOG0166|consen 351 A--GNQEQIQAVIDA 363 (514)
T ss_pred c--CCHHHHHHHHHc
Confidence 3 333344444444
No 56
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=21.70 E-value=89 Score=22.72 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=16.6
Q ss_pred hHHHHHHHhHHHHHHHHhc
Q 019512 292 DIVSILVANRSKLLRLFAD 310 (340)
Q Consensus 292 ~I~~IL~~Nr~kLi~fl~~ 310 (340)
...+||.-||+-+++||.+
T Consensus 25 DaLeiL~sNkdlflk~Lqd 43 (46)
T PF12552_consen 25 DALEILSSNKDLFLKFLQD 43 (46)
T ss_pred HHHHHHHhCHHHHHHHHhC
Confidence 4678999999999999975
No 57
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=9.5e+02 Score=24.97 Aligned_cols=191 Identities=19% Similarity=0.187 Sum_probs=103.1
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHH-------------HhccCchhhhhHHH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI-------------AGYENTDMALHYGA 146 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~-------------~gY~~~dial~~G~ 146 (340)
.+..|+.-+..-.-+.|||+..=+. +++-+||+++..-+ .-+...+...-.+.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glk--------------d~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~ 124 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLK--------------DLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLD 124 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHH--------------HHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHH
Confidence 4667777777778888887765333 44555666655221 11223344444444
Q ss_pred HHHHHHhHHHHHHHHhcchhhHhhhhhcc----CCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccC
Q 019512 147 MLRECIRHQSVARYVLESQHMKKFFDYIQ----LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (340)
Q Consensus 147 mLRecik~e~la~~iL~~~~f~~fF~yv~----~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (340)
.+-.|..-|. -++.+--++.|+. ..+=+|.-||+..+.-++.+-++....+... ...+|+ ..++.
T Consensus 125 ~~i~~~~~e~------~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~----il~n~~-d~i~~ 193 (393)
T KOG2149|consen 125 SLILPACKED------QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK----ILENFK-DVISK 193 (393)
T ss_pred HHHhhcchhh------hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH----HHHHHH-HHHHH
Confidence 4444333222 4566777777774 5678999999999999999998777655554 233332 22222
Q ss_pred CCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhh--hhhhhhhhcCCCCChhHHHHHHHh
Q 019512 223 SNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEA--FHVFKLFAANQNKPPDIVSILVAN 300 (340)
Q Consensus 223 ~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EA--FhvFKvFVANP~K~~~I~~IL~~N 300 (340)
.-+- .+-|.++...+. .---+|--.+.+-+..--+..=.+.+.+.|+ =..=++||-||.=.|..-.+..-+
T Consensus 194 ~~~~-~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~s~~~g~~e~~~s~g~~~d~~~~~v~~~~v~p~~~~vv~~~ 266 (393)
T KOG2149|consen 194 LQFY-KEDSNRLRTTLF------SSQYRLSTLRLNTVDLPSLAKGLSELETSEGDEQDAAKVCVLNPHVIPFEKEVVASL 266 (393)
T ss_pred hhhh-hhhhhhhhhhhh------hhhhhhhhhhhhhhccHHHHhccchhhhccCchhhhhcceeeccccccccccccccc
Confidence 1111 122333333121 1222233333333333344444556666666 344567777877776555544444
Q ss_pred HH
Q 019512 301 RS 302 (340)
Q Consensus 301 r~ 302 (340)
+.
T Consensus 267 ~s 268 (393)
T KOG2149|consen 267 KS 268 (393)
T ss_pred hh
Confidence 43
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=20.34 E-value=1e+02 Score=21.59 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhh
Q 019512 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFH 278 (340)
Q Consensus 227 tkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFh 278 (340)
+|+.++.-||+ +-......+..|+ ++-+..++.+|+|++..++-.|.+
T Consensus 3 vR~~A~~aLg~--l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~ 50 (55)
T PF13513_consen 3 VRRAAAWALGR--LAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAW 50 (55)
T ss_dssp HHHHHHHHHHC--TTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHhh--HhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57889999998 4466677777755 567888889999998888777654
Done!