Query 019512
Match_columns 340
No_of_seqs 122 out of 226
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 02:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 9E-132 3E-136 961.4 33.8 333 1-338 3-337 (341)
2 4hxt_A De novo protein OR329; 97.3 0.025 8.7E-07 48.6 17.9 205 72-288 37-244 (252)
3 4hxt_A De novo protein OR329; 96.8 0.16 5.4E-06 43.5 18.9 237 80-334 3-242 (252)
4 4db8_A Armadillo-repeat protei 96.7 0.024 8.2E-07 49.4 12.9 197 73-281 48-247 (252)
5 2jdq_A Importin alpha-1 subuni 96.1 0.48 1.6E-05 44.3 18.6 199 75-286 145-348 (450)
6 1wa5_B Importin alpha subunit; 96.1 0.28 9.4E-06 48.1 17.6 199 76-286 212-413 (530)
7 4db6_A Armadillo repeat protei 95.9 0.21 7.3E-06 42.1 14.1 188 82-282 15-206 (210)
8 4db6_A Armadillo repeat protei 94.3 0.91 3.1E-05 38.1 13.2 159 72-239 47-208 (210)
9 4db8_A Armadillo-repeat protei 94.2 2.4 8.2E-05 36.4 18.1 207 92-315 25-234 (252)
10 4b8j_A Importin subunit alpha- 94.0 2.9 9.9E-05 40.5 17.8 203 73-284 280-495 (528)
11 4fdd_A Transportin-1; heat rep 94.0 6.7 0.00023 40.6 22.7 186 82-287 93-287 (852)
12 4b8j_A Importin subunit alpha- 93.8 1.4 4.6E-05 42.9 15.0 198 76-286 199-401 (528)
13 1wa5_B Importin alpha subunit; 93.7 0.64 2.2E-05 45.4 12.4 199 74-281 294-506 (530)
14 2jdq_A Importin alpha-1 subuni 92.7 3.3 0.00011 38.5 15.2 196 74-278 229-436 (450)
15 3tpo_A Importin subunit alpha- 92.6 1.1 3.9E-05 44.2 12.4 202 73-286 156-365 (529)
16 4fdd_A Transportin-1; heat rep 91.1 2.3 7.8E-05 44.1 13.2 191 82-285 51-244 (852)
17 2bpt_A Importin beta-1 subunit 91.0 8.9 0.00031 38.9 17.3 110 171-286 185-296 (861)
18 1jdh_A Beta-catenin; beta-cate 90.5 5.4 0.00019 38.0 14.4 150 137-299 323-499 (529)
19 1xqr_A HSPBP1 protein; armadil 90.1 12 0.0004 34.8 21.1 208 14-241 25-239 (296)
20 3now_A UNC-45 protein, SD10334 89.7 8.8 0.0003 41.2 16.5 199 72-285 488-694 (810)
21 3tpo_A Importin subunit alpha- 88.9 19 0.00064 35.3 17.9 199 73-280 287-492 (529)
22 1jdh_A Beta-catenin; beta-cate 88.8 14 0.00049 35.0 15.9 195 77-286 141-340 (529)
23 2qk2_A LP04448P; mini spindles 88.2 9.4 0.00032 33.2 13.1 178 84-284 20-204 (242)
24 2z6h_A Catenin beta-1, beta-ca 87.5 19 0.00064 36.2 16.5 199 76-287 11-214 (644)
25 1xqr_A HSPBP1 protein; armadil 87.5 3.6 0.00012 38.4 10.5 166 156-334 115-285 (296)
26 2z6g_A B-catenin; FULL-length, 87.2 31 0.0011 36.0 18.4 181 78-270 149-332 (780)
27 4hat_C Exportin-1; heat repeat 86.3 16 0.00055 39.9 16.2 174 136-326 816-1022(1023)
28 1ibr_B P95, importin beta-1 su 85.7 22 0.00075 32.8 16.3 154 124-286 126-289 (462)
29 3ul1_B Importin subunit alpha- 85.3 26 0.0009 34.2 15.9 199 73-280 268-473 (510)
30 1u6g_C TIP120 protein, CAND1; 85.0 10 0.00035 41.0 13.8 148 80-241 49-205 (1230)
31 3ul1_B Importin subunit alpha- 85.0 11 0.00039 36.8 13.2 199 75-285 181-387 (510)
32 1qgr_A Protein (importin beta 83.2 31 0.0011 34.9 15.8 189 80-285 218-437 (876)
33 3gjx_A Exportin-1; transport, 81.6 8.6 0.00029 42.4 11.6 79 136-216 842-929 (1073)
34 3nmw_A APC variant protein; AR 78.0 24 0.00082 33.5 12.2 164 74-245 165-339 (354)
35 3now_A UNC-45 protein, SD10334 77.1 33 0.0011 36.8 14.0 202 72-285 529-737 (810)
36 1ibr_B P95, importin beta-1 su 77.0 45 0.0016 30.6 14.1 188 81-285 219-437 (462)
37 2bpt_A Importin beta-1 subunit 75.3 72 0.0025 32.1 20.1 187 80-283 225-438 (861)
38 3nmz_A APC variant protein; pr 74.4 50 0.0017 32.7 13.8 162 74-243 281-453 (458)
39 2qk2_A LP04448P; mini spindles 73.0 5.3 0.00018 34.7 5.7 132 169-310 19-159 (242)
40 1qgr_A Protein (importin beta 72.7 84 0.0029 31.7 21.1 111 170-286 177-289 (876)
41 1upk_A MO25 protein; transfera 69.7 65 0.0022 31.2 12.9 139 70-211 155-302 (341)
42 1b3u_A Protein (protein phosph 68.7 40 0.0014 32.1 11.3 140 170-334 446-585 (588)
43 3qml_C Protein SLS1, nucleotid 67.4 14 0.00049 35.5 7.6 51 79-134 71-122 (315)
44 2vgl_B AP-2 complex subunit be 66.9 75 0.0026 31.6 13.3 105 172-283 128-266 (591)
45 3grl_A General vesicular trans 60.8 1.7E+02 0.0057 30.7 20.3 138 67-207 109-254 (651)
46 3m1i_C Exportin-1; heat repeat 58.7 1.1E+02 0.0038 32.7 13.5 98 136-239 816-924 (1049)
47 1w63_A Adapter-related protein 55.2 1.7E+02 0.006 29.2 13.9 112 173-294 321-461 (618)
48 3eg5_B Protein diaphanous homo 55.1 1.3E+02 0.0045 28.9 12.3 137 8-191 64-211 (383)
49 2qk1_A Protein STU2; STU2P, XM 54.2 63 0.0022 28.7 9.2 181 89-282 26-217 (249)
50 3grl_A General vesicular trans 52.7 26 0.00089 36.8 7.1 62 218-280 129-190 (651)
51 1w63_A Adapter-related protein 52.3 1.9E+02 0.0066 28.9 20.0 42 173-215 187-228 (618)
52 3dad_A FH1/FH2 domain-containi 49.6 49 0.0017 32.0 8.1 104 177-288 130-234 (339)
53 2z6g_A B-catenin; FULL-length, 48.3 2.5E+02 0.0086 29.0 21.3 198 74-287 229-430 (780)
54 2z6h_A Catenin beta-1, beta-ca 47.8 2.2E+02 0.0076 28.2 21.3 198 73-286 92-293 (644)
55 2x19_B Importin-13; nuclear tr 47.7 2.6E+02 0.0088 29.0 23.6 170 125-311 725-907 (963)
56 3ltm_A Alpha-REP4; protein eng 44.9 1.3E+02 0.0044 24.7 15.5 95 166-289 113-207 (211)
57 3tjz_B Coatomer subunit gamma; 43.7 2.2E+02 0.0077 27.1 11.8 178 79-282 68-276 (355)
58 3ltj_A Alpharep-4; protein eng 43.5 1.3E+02 0.0045 24.5 14.2 52 218-283 114-165 (201)
59 3nmz_A APC variant protein; pr 41.1 2.7E+02 0.0092 27.3 15.4 199 79-289 243-455 (458)
60 2bnx_A Diaphanous protein homo 40.9 2.3E+02 0.008 27.1 11.5 103 8-140 2-114 (386)
61 1wa5_C Importin alpha RE-expor 40.8 3.4E+02 0.012 28.4 15.9 103 90-197 48-155 (960)
62 1xm9_A Plakophilin 1; armadill 38.9 1.5E+02 0.005 28.4 9.8 130 125-265 5-136 (457)
63 1xm9_A Plakophilin 1; armadill 37.5 1E+02 0.0035 29.6 8.3 110 169-286 6-117 (457)
64 2f31_A Diaphanous protein homo 37.3 2.2E+02 0.0074 25.1 11.3 134 11-191 1-145 (233)
65 1ddb_A Protein (BID); apoptosi 36.1 27 0.00091 31.3 3.5 73 39-117 81-165 (195)
66 1vdy_A Hypothetical protein (R 35.1 90 0.0031 26.3 6.6 89 62-153 26-122 (140)
67 3opb_A SWI5-dependent HO expre 30.4 1.4E+02 0.0047 32.0 8.5 162 155-321 595-766 (778)
68 2vgl_A Adaptor protein complex 30.1 4.4E+02 0.015 26.5 16.1 218 48-297 311-563 (621)
69 2jqq_A Conserved oligomeric go 28.9 2.3E+02 0.0077 25.5 8.3 76 13-91 75-153 (204)
70 3nmw_A APC variant protein; AR 28.7 3.7E+02 0.013 25.2 13.1 197 78-286 126-335 (354)
71 2qfa_B Borealin; three-helical 27.2 12 0.0004 27.8 -0.3 34 301-334 4-39 (62)
72 3ltm_A Alpha-REP4; protein eng 27.0 2.6E+02 0.0088 22.8 15.0 86 169-283 85-170 (211)
73 1w9c_A CRM1 protein, exportin 25.3 4.4E+02 0.015 25.0 15.8 92 125-216 114-221 (321)
74 3dad_A FH1/FH2 domain-containi 23.9 4.9E+02 0.017 25.0 17.7 153 17-194 118-286 (339)
75 1oyz_A Hypothetical protein YI 23.7 76 0.0026 27.5 4.4 66 218-297 30-95 (280)
76 3opb_A SWI5-dependent HO expre 23.4 2.3E+02 0.008 30.2 8.7 162 93-266 124-306 (778)
77 3ltj_A Alpharep-4; protein eng 23.4 2.9E+02 0.01 22.3 14.9 85 167-280 109-193 (201)
78 2yru_A Steroid receptor RNA ac 23.4 2.7E+02 0.0093 22.6 7.4 43 40-82 37-79 (118)
79 2bid_A Protein (BID); programm 21.8 2.1E+02 0.0071 25.5 6.6 80 39-124 83-183 (197)
80 3r1f_A ESX-1 secretion-associa 20.1 1.1E+02 0.0037 25.0 4.3 97 8-108 25-129 (135)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=9.4e-132 Score=961.39 Aligned_cols=333 Identities=44% Similarity=0.773 Sum_probs=309.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc
Q 019512 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (340)
Q Consensus 1 M~~lF~~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d 79 (340)
|+ ||++||||+|+||+++|+|.+|+.++ ++++.++|+ +||+|+|++||.||||++|++|+||+|+|||+|+|++|
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d 78 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG 78 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 56 99999999999999999999999643 234544555 89999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR 159 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~ 159 (340)
+|++||.+|++||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||+|||||+|||.+|+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 019512 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (340)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elL 239 (340)
+||+|++||+||+|++.|+||||||||+||||+||+||++||+||++||||||++|| +||+|+||||||||||||||||
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-ccc
Q 019512 240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDE 318 (340)
Q Consensus 240 ldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D~ 318 (340)
+||+|++||++||+|++|||+||+||+|+|||||+|||||||||||||+||+||.+||.+||+|||+||.+|++|+ +|+
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDe 317 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDE 317 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred chHHHHHHHHHHHhcCCCCC
Q 019512 319 QFEADKAQVVKEIAGLEPRD 338 (340)
Q Consensus 319 qF~dEK~~li~~I~~L~~~~ 338 (340)
||.|||+|||++|++||++.
T Consensus 318 qF~dEK~~lI~~I~~L~~~~ 337 (341)
T 1upk_A 318 QFNDEKTYLVKQIRDLKRPA 337 (341)
T ss_dssp HHHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999998654
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.27 E-value=0.025 Score=48.58 Aligned_cols=205 Identities=12% Similarity=0.196 Sum_probs=152.8
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHH
Q 019512 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLR 149 (340)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLR 149 (340)
...+...+.+..|+..|..=+-+.|..+..+..++..... ...+.+.. ...+..|+.-. +++++...+-..|.
T Consensus 37 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD----EAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh----HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455667889999999988888888888888888865321 12233332 33444444433 35677777888888
Q ss_pred HHH-hHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchh
Q 019512 150 ECI-RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 150 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
.+. ..+.....+.....+..+.+.+..++-++...|..++..+-..++.....+.... .+...- .++.+++.-++
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~ 187 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQ 187 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHHH-HHHCCCCHHHH
Confidence 877 5677888888888888999999999999999999999998877776666665543 445553 88999999999
Q ss_pred hhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCC
Q 019512 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQN 288 (340)
Q Consensus 229 RQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~ 288 (340)
+.++..|+.+... +-. ..+++.+..-+..++.+|++.+..+|-+|..+..-+...+.
T Consensus 188 ~~a~~~L~~l~~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 188 KEAARALANIASG--PTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHTTS--BHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHcC--CHH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999999962 222 34455567889999999999999999999988877665443
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.84 E-value=0.16 Score=43.52 Aligned_cols=237 Identities=13% Similarity=0.225 Sum_probs=162.9
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHHhH-HH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRH-QS 156 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~-e~ 156 (340)
.+..|+..|..=+-+.|..+.....++..... ...+.+.. ..++..|+..- +++++-..+-..|..+..+ +.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA----SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH----HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc----HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 45677777777777888888888887766332 12233332 24444444433 2467777777788887777 88
Q ss_pred HHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 019512 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (340)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~ 236 (340)
....+.....+..+...++.++-++...|..++..+-..++......+... .+...- .++.+++--+++.++..|+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999877777666666643 445553 8899999999999999999
Q ss_pred HHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCCc
Q 019512 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKE 316 (340)
Q Consensus 237 elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~~ 316 (340)
.+.....+ ..+.+-+..-+..++.+|++.+..++..|...+--+.+. ++.....+... ..+..|-++..+ .
T Consensus 154 ~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~--~~i~~L~~ll~~-~ 224 (252)
T 4hxt_A 154 NIASGPDE---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---PTSAIKAIVDA--GGVEVLQKLLTS-T 224 (252)
T ss_dssp HHTTSCHH---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---BHHHHHHHHHT--THHHHHHHGGGC-S
T ss_pred HHHcCCHH---HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHC--CCHHHHHHHHCC-C
Confidence 99864332 223444578899999999999999999999988877762 33444444332 244444444333 3
Q ss_pred ccchHHHHHHHHHHHhcC
Q 019512 317 DEQFEADKAQVVKEIAGL 334 (340)
Q Consensus 317 D~qF~dEK~~li~~I~~L 334 (340)
|+....+=...+..|..-
T Consensus 225 ~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcC
Confidence 444444444444444443
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.72 E-value=0.024 Score=49.40 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=141.5
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRe 150 (340)
..+...+.+..|+..|..=+-+.|..+..+..++.....+ ..+.+.. ...+..|+..- +++++--.+-..|..
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3566778999999999888888888888888877653221 1223322 23444444433 356667777777777
Q ss_pred HHhHHHHH-HHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhh
Q 019512 151 CIRHQSVA-RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (340)
Q Consensus 151 cik~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkR 229 (340)
...++... ..+.....+..+.+.++.++-++...|..++..+-...+.........+ .....- .++.+++.-++.
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~ 198 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQ 198 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HGGGCSSHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHCCCCHHHHH
Confidence 77776666 7778888888889999999999999999999999876766555555433 344453 788999999999
Q ss_pred hhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhh
Q 019512 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFK 281 (340)
Q Consensus 230 QSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFK 281 (340)
.++..|+.+... +-.. ...+-+..-+..++.+|++.+..+|-+|..+..
T Consensus 199 ~a~~~L~~l~~~--~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 199 EALWALSNIASG--GNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHHHTTS--CHHH-HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHHHHHhcC--CHHH-HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999832 2222 223445678899999999999999988876543
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.08 E-value=0.48 Score=44.30 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=139.9
Q ss_pred HHhhchHHHHHhhCCC-CChhhhhcHHHHHHHHhhhh-ccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHH
Q 019512 75 FFRENTLRLLITCLPK-LNLEARKDATQVVANLQRQQ-VHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (340)
Q Consensus 75 i~~~dll~~Li~~l~~-L~fE~rKdv~~If~~llr~~-~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRe 150 (340)
+...+.+..|+..+.. -+-+.|+.++..+.++.+.. ...+ ...+ ..++..|+..- +++++...+...|+.
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE---FAKV---SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC---GGGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3445788889999885 67888999999888888743 1111 1122 33444444333 245555556666776
Q ss_pred HHhH-HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhh
Q 019512 151 CIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (340)
Q Consensus 151 cik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkR 229 (340)
+..+ +.....+...+.+..+.+.+..++-++...|..++..+.+.+.......+..+ .....- .++.+++.-+|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~ll~~~~~~vr~ 294 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS---ALQSLL-HLLSSPKESIKK 294 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHTTCSSHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc---cHHHHH-HHHcCCCHHHHH
Confidence 6654 34455566667788888888889999999999999999887765555555433 455553 789999999999
Q ss_pred hhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 230 QSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
.++..||.+.. .+...+...+ +..-+..++.+|++.+..+|.+|..+.--+...
T Consensus 295 ~a~~~L~~l~~--~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 295 EACWTISNITA--GNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHTT--SCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999984 2333333333 346788999999999999999999888777764
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.08 E-value=0.28 Score=48.08 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=141.1
Q ss_pred HhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHHh
Q 019512 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR 153 (340)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik 153 (340)
...+.+..|+..+..-+-+.|+.++....++.+..... +..... ..++..|+.-- +++++-..+-..|..+..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--CcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 44567888888888877888898888888888743111 111122 23333333322 345565556666666554
Q ss_pred H-HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhH
Q 019512 154 H-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (340)
Q Consensus 154 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (340)
. +.....++..+.+..+..++..++-++...|..++..+.+.+......++..+ +...+- .+|.+++.-++..++
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPALR-LLLSSPKENIKKEAC 362 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHHH-HHHcCCCHHHHHHHH
Confidence 3 44556667777788888888888999999999999998887776666666544 445553 789999999999999
Q ss_pred HHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 233 KLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
..|+.+.. .+...+..++ +..-+..++.+|++.+..+|.+|...+--+...
T Consensus 363 ~aL~~l~~--~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 363 WTISNITA--GNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHTT--SCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999874 3334333333 567789999999999999999999988877764
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.92 E-value=0.21 Score=42.08 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=129.9
Q ss_pred HHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHH-hHHHHH
Q 019512 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECI-RHQSVA 158 (340)
Q Consensus 82 ~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLReci-k~e~la 158 (340)
..|+.-|..=+-+.|..+.....++.+.... ..+.+.. ...+..|+..- +++++--.+-..|..+. ..+...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3444445555667777777777776542211 1222222 23333333332 24566666667777766 356666
Q ss_pred HHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 019512 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (340)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~el 238 (340)
..+.....+..+.+.++.++-++...|..++..+-..++......+..+ .+...- .++.+++.-+++.++..|+.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHH-HHHcCCCHHHHHHHHHHHHHH
Confidence 7777777888999999999999999999999999877776666665543 445553 789999999999999999999
Q ss_pred hcc-ccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhh
Q 019512 239 LLD-RSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKL 282 (340)
Q Consensus 239 Lld-r~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKv 282 (340)
... +.+ ...+.+..-+..+..+|.+.+..+|-+|.....-
T Consensus 166 ~~~~~~~----~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 166 ASGGNEQ----KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206 (210)
T ss_dssp HTSCHHH----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HcCCcHH----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 975 322 2345556788899999999999999888766543
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.34 E-value=0.91 Score=38.13 Aligned_cols=159 Identities=12% Similarity=0.111 Sum_probs=113.4
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--CchhhhhHHHHHH
Q 019512 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLR 149 (340)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLR 149 (340)
...+...+.+..|+..|..=+-+.|..+.....++...... ..+.+.. ...+..|+..-+ ++++--.+-..|.
T Consensus 47 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35566778999999999887888888888888887642211 1222222 233333333332 4555556666666
Q ss_pred HHH-hHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchh
Q 019512 150 ECI-RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 150 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
... ..+...+.++....+..+.+.++.++-++...|..++..+...++.....+...+ .+...- .|+.+++.-++
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~ 197 (210)
T 4db6_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQ 197 (210)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHH
T ss_pred HHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHhCCCHHHH
Confidence 655 3455666777888888999999999999999999999999887777666666654 445553 89999999999
Q ss_pred hhhHHHHHHHh
Q 019512 229 RQAVKLLGDIL 239 (340)
Q Consensus 229 RQSLKLL~elL 239 (340)
++++..|+.|-
T Consensus 198 ~~a~~aL~~l~ 208 (210)
T 4db6_A 198 KEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.23 E-value=2.4 Score=36.45 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=136.3
Q ss_pred ChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--CchhhhhHHHHHHHHHh-HHHHHHHHhcchhhH
Q 019512 92 NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIR-HQSVARYVLESQHMK 168 (340)
Q Consensus 92 ~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik-~e~la~~iL~~~~f~ 168 (340)
+-+.|..++....+++.... +..+.+.. ..++..|+.--. ++++-..+-..|..+.. .+.....+.....+.
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~----~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGN----EQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHH----HHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCC----chHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 44556666666655554311 12222222 234444444332 35666667777777776 566777788887888
Q ss_pred hhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHH
Q 019512 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (340)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm 248 (340)
.+.+.++.++-++...|..++..+-..+......+.... .....- .++.+++.-+++.++..|+.+...... .
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~---~ 172 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIASGGNE---Q 172 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHHHHHHHHHHHHTTSCHH---H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC---CHHHHH-HHHhCCCHHHHHHHHHHHHHHHcCChH---H
Confidence 888999999999999999999988666554435555543 344553 789999999999999999999964322 2
Q ss_pred HHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC
Q 019512 249 TRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK 315 (340)
Q Consensus 249 ~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~ 315 (340)
...+.+..-+..++.+|++++..++..|..++--++.. ++.....+.. ...+.-|-+...+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~--~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQKQAVKE--AGALEKLEQLQSHE 234 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS---CHHHHHHHHH--TTHHHHHHTTTTCS
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHH--CCcHHHHHHHhCCC
Confidence 23344567889999999999999999999988877742 2333333332 23555566655443
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.03 E-value=2.9 Score=40.54 Aligned_cols=203 Identities=13% Similarity=0.149 Sum_probs=138.2
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc---CchhhhhHHHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE---NTDMALHYGAMLR 149 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~---~~dial~~G~mLR 149 (340)
+.+...+.+..|+..|..=+-+.|..+..+..++.... ....+.+.. ..++..|+..-. ++++.-.+-..|.
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD----DAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC----HHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 35566688899999998888888888888888876522 122333333 333333332221 4555555555555
Q ss_pred HHHh-HHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHHHHhhccCCCcch
Q 019512 150 ECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (340)
Q Consensus 150 ecik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~-hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVt 227 (340)
.+.. .+.....++....+..+.+.++.+++++-..|..++..+... .+.....+...+ .+..+ ..||.+++--+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L-~~lL~~~d~~v 430 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEG---CIKPL-CDLLICPDIRI 430 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---CHHHH-HHHHcCCCHHH
Confidence 5543 455566677777788888888889999999999999888776 455554444433 33444 37889999899
Q ss_pred hhhhHHHHHHHhccccchH--------HHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhh
Q 019512 228 RRQAVKLLGDILLDRSNSV--------VMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFA 284 (340)
Q Consensus 228 kRQSLKLL~elLldr~N~~--------vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFV 284 (340)
+..++..|+.|+....+.. -....+.+..-+..+..|+.+.+..|+--|..+..-+.
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999999986543321 24556667777888899999998888888888776544
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.98 E-value=6.7 Score=40.64 Aligned_cols=186 Identities=14% Similarity=0.173 Sum_probs=119.3
Q ss_pred HHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHH------HHHHHhHH
Q 019512 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAM------LRECIRHQ 155 (340)
Q Consensus 82 ~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~m------LRecik~e 155 (340)
..++..|..=+-..|+.++.+.+.+.+.. +...-|+++..|+..-.+++...-.|.+ ..++-..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---------~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~- 162 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG---------ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI- 162 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT---------TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc---------CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 34444555445556677777777666643 1223488888888887766544333332 2222111
Q ss_pred HHHHHHhc---chhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhH
Q 019512 156 SVARYVLE---SQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (340)
Q Consensus 156 ~la~~iL~---~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (340)
+.+.-+. ...+-.+++.++.++-+|-.-|..++..++..+.. -+..+.+.++...- .++.+++--+|++++
T Consensus 163 -~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~-~~~~d~~~~vr~~a~ 236 (852)
T 4fdd_A 163 -LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLF-ALAGDEEPEVRKNVC 236 (852)
T ss_dssp -HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHH-HHHTCCCHHHHHHHH
T ss_pred -hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHH-HHcCCCCHHHHHHHH
Confidence 1000000 11344566666778888888888888776654432 23445667777764 788899999999999
Q ss_pred HHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCC
Q 019512 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQ 287 (340)
Q Consensus 233 KLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP 287 (340)
+.|+.+.. .....+..|+. .-+..++.+++|+...++.+|...+.-++..+
T Consensus 237 ~~L~~l~~--~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 237 RALVMLLE--VRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHHHHH--HCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHH--hCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 99999985 44566666765 46777888999999999999988777665443
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.84 E-value=1.4 Score=42.92 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=138.9
Q ss_pred HhhchHHHHHhhC-CCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHH
Q 019512 76 FRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECI 152 (340)
Q Consensus 76 ~~~dll~~Li~~l-~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLReci 152 (340)
...+.+..|+..| ..-+-+.++.++....++.+.... +..... ..++..|+..- .++++...+-..|..+.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~---~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ---PSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC---CCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC---CcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3446788888888 666788899999988888875422 112222 34444444333 34555555555555555
Q ss_pred hH-HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCC-Ccchhhh
Q 019512 153 RH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS-NYITRRQ 230 (340)
Q Consensus 153 k~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~-NYVtkRQ 230 (340)
.+ +.....++....+..+...+..++-+|...|..++..+.+.........+..+ ....+- .+|.++ +--+++.
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~~v~~~ 348 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ---ALPCLL-SLLTQNLKKSIKKE 348 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHHHSCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh---hHHHHH-HHHcCCCcHHHHHH
Confidence 44 33445666777788888889888889999999999999887776666666543 344553 788888 9999999
Q ss_pred hHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 231 SLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
+...|+.|... +.... .++-+..-+..++.+|.+....++-+|...+.-+..+
T Consensus 349 A~~~L~nl~~~--~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 349 ACWTISNITAG--NKDQI-QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHTS--CHHHH-HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHH-HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999852 33333 3344456788999999999999999999988877765
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.65 E-value=0.64 Score=45.43 Aligned_cols=199 Identities=10% Similarity=0.130 Sum_probs=129.2
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccC--chhhhhHHHHHHHH
Q 019512 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN--TDMALHYGAMLREC 151 (340)
Q Consensus 74 ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~--~dial~~G~mLRec 151 (340)
.+...+++..|+..|..=+.+.|..+..+..++..... ...+.+.. ..++..|+....+ +++-..+-..|..+
T Consensus 294 ~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND----LQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH----HHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34455788889988887788888888888887765221 11222222 3455555544433 34444444444444
Q ss_pred Hh-HHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhCh---HHHHHHHHhcHHHHHHHHHHhhccCCCcch
Q 019512 152 IR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---STVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (340)
Q Consensus 152 ik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk---~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVt 227 (340)
.. .+...+.++....+..+.+.++.++++|-.-|..++..+..... .....++..+ ....+- .++.+++.-+
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~---~l~~L~-~ll~~~~~~v 444 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG---CIKPLC-DLLEIADNRI 444 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT---CHHHHH-HHTTTCCHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC---CHHHHH-HHHhCCCHHH
Confidence 43 34445556666677788888888999999999999988877532 3444444332 444553 7888999999
Q ss_pred hhhhHHHHHHHhccccch--------HHHHHhhcChhhHHHHHHHhccCccccchhhhhhhh
Q 019512 228 RRQAVKLLGDILLDRSNS--------VVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFK 281 (340)
Q Consensus 228 kRQSLKLL~elLldr~N~--------~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFK 281 (340)
+..++..|+.++....+. +-....+.+..-+..+..|+.++...|+-.|..+..
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999765442 123345556666777777888877777777766554
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.65 E-value=3.3 Score=38.48 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=121.0
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccC--chhhhhHHHHHHHH
Q 019512 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN--TDMALHYGAMLREC 151 (340)
Q Consensus 74 ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~--~dial~~G~mLRec 151 (340)
.+...+.+..|+..|..=+.+.|..+.....++..... ...+.+.. ..++..|+..-.+ +++--.+-..|..+
T Consensus 229 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 229 AVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD----IQTQVILN-CSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh----HHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34456788899999988888888888888888765221 11222222 2455555554443 34444444444444
Q ss_pred Hh-HHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhh
Q 019512 152 IR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (340)
Q Consensus 152 ik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~-hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkR 229 (340)
.. .+...+.++....+..+.+.+..++.+|-..|..++..+... .+..+..++..+ .+..+- .++.+++.-+++
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~---~i~~L~-~ll~~~~~~v~~ 379 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG---CIKPLC-DLLTVMDSKIVQ 379 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHT---CHHHHH-HGGGSSCHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---CHHHHH-HHhcCCCHHHHH
Confidence 43 344455566666677777888888999999999999988876 445554555433 344453 788889999999
Q ss_pred hhHHHHHHHhccccchHH--------HHHhhcChhhHHHHHHHhccCccccchhhhh
Q 019512 230 QAVKLLGDILLDRSNSVV--------MTRYVSSRENLRILMNLLRESSKSIQIEAFH 278 (340)
Q Consensus 230 QSLKLL~elLldr~N~~v--------m~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFh 278 (340)
.++..|+.++....+... ....+.+..-+..+..|+.+++..++--|..
T Consensus 380 ~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 436 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999865443321 1223333333444555555555444444443
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.60 E-value=1.1 Score=44.16 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=119.5
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhh-------hHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL-------HYG 145 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial-------~~G 145 (340)
+.+...+.+..|+..|..=+-+.|..++....++-..... .-+.+.. ..++..|+.--..++... .+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~----~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA----FRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH----HHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH----HHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 3455667788888888888888888777777776542211 1122222 122222222222222111 122
Q ss_pred HHHHHHHhHH-HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCC
Q 019512 146 AMLRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN 224 (340)
Q Consensus 146 ~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~N 224 (340)
..|..+.++. .........+.+-.+...++.++-++..||...+..+...+........... .....- .||.+++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~ 306 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG---VVPQLV-KLLGATE 306 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT---CHHHHH-HHHTCSC
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc---chHHHH-HHhcCCC
Confidence 2222222211 1001111112233445566777888889998888887765554443333333 233443 7899999
Q ss_pred cchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 225 YITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 225 YVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
.-+++.++..||.|.... .-.+..+-+..-+..++.||++++..||-+|..+.--..++
T Consensus 307 ~~v~~~a~~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp HHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHccc---hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999998432 33455666777888999999999999999998877655553
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.08 E-value=2.3 Score=44.15 Aligned_cols=191 Identities=8% Similarity=0.133 Sum_probs=118.6
Q ss_pred HHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--CchhhhhHHHHHHHHHhHHHHHH
Q 019512 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVAR 159 (340)
Q Consensus 82 ~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~la~ 159 (340)
..++..+..-+-+.|.-++..+.+.+++.- ..++ -..+..|-..|+.+-. ++.+-..++..+...++++...
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w----~~~~-~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~- 124 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHF----QNFP-NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ- 124 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSG----GGCC-HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHcc----CCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-
Confidence 344444556677778777777777665321 1110 0112344444544443 4556667777777777765211
Q ss_pred HHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHH-HHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 019512 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA-EFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (340)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lva-efl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~el 238 (340)
-..+.+-.+++.++.++..+---|+.++..+....+.... +.+....+.++..+- +++.+++--+|..+++-|+.+
T Consensus 125 --~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 125 --NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp --TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT-TTTTCSSHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Confidence 0112334556677777777777788888777765443321 122233566777775 788899999999999999988
Q ss_pred hccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 239 LLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 239 Lldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
+.... ..+..++ ++.+..+..++.|++..++-.|+..+--++.
T Consensus 202 ~~~~~--~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 202 IISRT--QALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp TTTTC--HHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred Hhccc--HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 85432 2222222 4677888889999999999999988866554
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.04 E-value=8.9 Score=38.86 Aligned_cols=110 Identities=8% Similarity=0.091 Sum_probs=69.6
Q ss_pred hhhccCC--ChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHH
Q 019512 171 FDYIQLP--NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (340)
Q Consensus 171 F~yv~~~--~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm 248 (340)
...+..+ +-+|-.-|..++..++..-..-..... ..+.+..... .++.+++.-.|+.+++.|+++..... ..+
T Consensus 185 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~~ll~~l~-~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 259 (861)
T 2bpt_A 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG--ERNYLMQVVC-EATQAEDIEVQAAAFGCLCKIMSKYY--TFM 259 (861)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH--HHHHHHHHHH-HHHTCSCHHHHHHHHHHHHHHHHHHG--GGC
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh--HHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3344444 677777777777766431110000000 0122445553 67889999999999999999985432 223
Q ss_pred HHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 249 TRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 249 ~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
..|+.. .-+.+++..+.|....++..|+..+.-++..
T Consensus 260 ~~~l~~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 260 KPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 334431 4566778889999999999999999887765
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=90.50 E-value=5.4 Score=38.02 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=92.9
Q ss_pred CchhhhhHHHHHHHHHhH----HHHHHHHhcchhhHhhhhhccCCCh-hhhhhHHHHHHHHHhhChHHHHHHHHhcHHHH
Q 019512 137 NTDMALHYGAMLRECIRH----QSVARYVLESQHMKKFFDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWF 211 (340)
Q Consensus 137 ~~dial~~G~mLRecik~----e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~tfkellt~hk~lvaefl~~nyd~F 211 (340)
++++-..+-..|+-+..+ +.....+.....+..+.+.++.++. ++...|..++..+-. ++.....+...+ +
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~---~ 398 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQG---A 398 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcC---C
Confidence 355555555555554432 2234455556667777778887764 888888888888765 443334454443 2
Q ss_pred HHHHHHhhccCCCcchhh----------------------hhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCc
Q 019512 212 FAEYNSKLLESSNYITRR----------------------QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESS 269 (340)
Q Consensus 212 f~~yn~~Ll~s~NYVtkR----------------------QSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~s 269 (340)
+...- .++.++++-+|+ .++.-|+.+..++.|... +.+..-+..+..+|.|..
T Consensus 399 i~~L~-~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~----l~~~~~v~~l~~ll~~~~ 473 (529)
T 1jdh_A 399 IPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV----IRGLNTIPLFVQLLYSPI 473 (529)
T ss_dssp HHHHH-HHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHH----HHHTTCHHHHHHGGGCSC
T ss_pred HHHHH-HHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHH----HhccCCccHHHHHHcCCc
Confidence 33342 566666666665 455666667665544433 334466889999999999
Q ss_pred cccchhhhhhhhhhhcCCCCChhHHHHHHH
Q 019512 270 KSIQIEAFHVFKLFAANQNKPPDIVSILVA 299 (340)
Q Consensus 270 k~Iq~EAFhvFKvFVANP~K~~~I~~IL~~ 299 (340)
.+|+..|-..+.-+..+ ++....+..
T Consensus 474 ~~v~~~a~~~l~~l~~~----~~~~~~i~~ 499 (529)
T 1jdh_A 474 ENIQRVAAGVLCELAQD----KEAAEAIEA 499 (529)
T ss_dssp HHHHHHHHHHHHHHTTS----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 99999998877766533 444444444
No 19
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.13 E-value=12 Score=34.81 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhhccC-Cchhhhh-HHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHh-hCCC
Q 019512 14 DIVRQTRDLIIYANRSA-DVRESKR-EDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLIT-CLPK 90 (340)
Q Consensus 14 elVr~l~e~l~~L~~~~-~~~~~K~-~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~-~l~~ 90 (340)
+-++.+++++..|.++. ..+.... ..-.++-...+..+..++.+. .-++.+...+-+..|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~-----------dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-----------DNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH-----------HHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh-----------hhHHHHHHcCCHHHHHHHHHcC
Confidence 34777788888887642 1111110 000133444455555555411 24566777888888999 8888
Q ss_pred CChhhhhcHHHHHHHHhhhhccCccchhHHhhh---cHhHHHHHHHhccCchhhhhHHHHHHHHHh-HHHHHHHHhcchh
Q 019512 91 LNLEARKDATQVVANLQRQQVHSKLIASDYLEA---NIDLLDILIAGYENTDMALHYGAMLRECIR-HQSVARYVLESQH 166 (340)
Q Consensus 91 L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~---~peil~~L~~gY~~~dial~~G~mLRecik-~e~la~~iL~~~~ 166 (340)
=+-+.|..++.+.+++...... .-+++.. -|-++..|-.+. ++.+.-.+-.-|--+++ ++.....+...+.
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 8888899999988888752211 1223332 144444433322 23333333233333333 3444444555556
Q ss_pred hHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcc
Q 019512 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLD 241 (340)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLld 241 (340)
+-.+...++.+++++-.+|...+..+...++.....+...+. +...- .||.+++--++.+++..|+.|+.+
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~---i~~Lv-~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM---VQQLV-ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH---HHHHH-HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC---HHHHH-HHHcCCChhHHHHHHHHHHHHHhC
Confidence 667777788899999999999999998887777777777663 44553 899999999999999999999976
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=89.73 E-value=8.8 Score=41.16 Aligned_cols=199 Identities=10% Similarity=0.121 Sum_probs=128.1
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhc---HhHHHHHHHhccCchhhhhHHHHH
Q 019512 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAML 148 (340)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gY~~~dial~~G~mL 148 (340)
++.+...+.+..|+..+..=+-+.|+.++.+..++-... ...+.+..+ |-++..|-.|.... -..-+..+-
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-----~~r~~Vv~~Gaip~Lv~LL~s~~~~~-k~~Aa~AL~ 561 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALA 561 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHHHHSSCHHH-HHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----HHHHHHHHCCCHHHHHHHHccCCHHH-HHHHHHHHH
Confidence 478888999999999999888889999999998885421 234555553 55566665554211 111122222
Q ss_pred HHHHhHHHHHHHHhc----chhhHhhhhhccCCCh-hhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCC
Q 019512 149 RECIRHQSVARYVLE----SQHMKKFFDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS 223 (340)
Q Consensus 149 Recik~e~la~~iL~----~~~f~~fF~yv~~~~F-diasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~ 223 (340)
+-|+-... ..++. .+.+-.+.+.+..+.- ....+|...+.-|.+.........+... .+...- .|+.++
T Consensus 562 nL~~~~~p--~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv-~LL~s~ 635 (810)
T 3now_A 562 RIGITINP--EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIE-YYLMED 635 (810)
T ss_dssp HHHHHSCH--HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHSC
T ss_pred HHhcCCCh--hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHH-HHHcCC
Confidence 22322111 00110 0123344444443322 2234677777777665555444544443 355663 788999
Q ss_pred CcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 224 NYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 224 NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
|--.++.|+.+|+.|...+. ...+++.+..-++.+..||.+.+..+|-+|--.+--..+
T Consensus 636 ~~~Vq~~A~~~L~NLa~~~~---~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 636 HLYLTRAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp CTTHHHHHHHHHHHHTTSHH---HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChH---HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999997654 566778667899999999999999999999877766665
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=88.86 E-value=19 Score=35.34 Aligned_cols=199 Identities=10% Similarity=0.126 Sum_probs=120.5
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhc--HhHHHHHHHhccCchhhhhHHHHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gY~~~dial~~G~mLRe 150 (340)
+.+...+.+..|+..|..=+.+.+..+.....++..... .....+... -..+..|+.. .++++--.+...|..
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~----~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch----HHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 345667788888888888788888877777777764211 111222221 1122223322 234443334444444
Q ss_pred -HHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhC-hHHHHHHHHhcHHHHHHHHHHhhccCCCcchh
Q 019512 151 -CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 151 -cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~h-k~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
|...+.....+.....+..+...+..+++++-..|..++.-+.... +..+......+ ..... ..||.+++-=+.
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g---~i~~L-~~LL~~~d~~i~ 437 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 437 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc---CHHHH-HHHhcCCCHHHH
Confidence 3445666667777778888889999999999999988888776543 22233333332 23334 378888888888
Q ss_pred hhhHHHHHHHhc---cccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhh
Q 019512 229 RQAVKLLGDILL---DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVF 280 (340)
Q Consensus 229 RQSLKLL~elLl---dr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvF 280 (340)
+.+|.-|..|+- .-.+.+-+..+|....-+..+-.|..+++..|+--|+.+.
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888888888773 1123344455566666666666676666666665555544
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.84 E-value=14 Score=35.01 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=125.1
Q ss_pred hhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhh--cHhHHHHHHHhccCchhhhhHHHHHHHHHhH
Q 019512 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRH 154 (340)
Q Consensus 77 ~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gY~~~dial~~G~mLRecik~ 154 (340)
..+.+..|+..+..=+.+.|..+.....++-....+ ...-+.. -.+.+..+++.++..+....++.+|+.+..+
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~----~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE----SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 456777888887765555555554455544331111 1111111 1223333455556666666778888887777
Q ss_pred HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHH
Q 019512 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (340)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (340)
+.....+...+.+..+.+.++.++=++...|..++..+-...+.. ..........- +|+.+++--++..+...
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~i~~L~-~ll~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLV-QLLGSDDINVVTCAAGI 289 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHH-HHTTCSCHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh------HHHHhHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 777777887777888888888887777777777777664432211 11234556664 78899999999999999
Q ss_pred HHHHhccc-cchHHHHHhhcChhhHHHHHHHhccCc--cccchhhhhhhhhhhcC
Q 019512 235 LGDILLDR-SNSVVMTRYVSSRENLRILMNLLRESS--KSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 235 L~elLldr-~N~~vm~~Yi~~~~NLkliM~lL~d~s--k~Iq~EAFhvFKvFVAN 286 (340)
|+.|-... .|.. .+.+..-+..++.+|.+.+ ..++..|.....-+..+
T Consensus 290 L~~L~~~~~~~~~----~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 290 LSNLTCNNYKNKM----MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHTTTCHHHHH----HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhcCCHHHHH----HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 99996532 2332 3334557888888888644 57888898888777654
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.20 E-value=9.4 Score=33.15 Aligned_cols=178 Identities=10% Similarity=0.137 Sum_probs=109.9
Q ss_pred HHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc-Cchhhh------hHHHHHHHHHhHHH
Q 019512 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE-NTDMAL------HYGAMLRECIRHQS 156 (340)
Q Consensus 84 Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~-~~dial------~~G~mLRecik~e~ 156 (340)
+...+..=+|..|+.+..-...++.... +... ....+++..|...-. +++... ..|.+.+.. +. .
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~~-~ 91 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHP--KLEN----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-AK-R 91 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCC----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-GG-G
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCC--CCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-hh-h
Confidence 3344556788889988887777776311 1111 112466666666553 443322 222222211 11 0
Q ss_pred HHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 019512 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (340)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~ 236 (340)
+..++ ...+-.+++.+.-++=.|..-|..++..+.... +++.+....- ..+.+.|.-+|..++.+|+
T Consensus 92 ~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~-~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 92 FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIV-ESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH-HHHcCCChHHHHHHHHHHH
Confidence 11100 012334445555677778888888888876633 3566777774 7888999999999999999
Q ss_pred HHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhh
Q 019512 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFA 284 (340)
Q Consensus 237 elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFV 284 (340)
.++..-.....+..|+ +.-+..++.+|.|+...++-.|+..+-.+.
T Consensus 159 ~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp HHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 9885532233445566 467888999999999999998887776543
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.53 E-value=19 Score=36.16 Aligned_cols=199 Identities=12% Similarity=0.145 Sum_probs=128.9
Q ss_pred HhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc---cCchhhhhHHHHHHHHH
Q 019512 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECI 152 (340)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLReci 152 (340)
+..+.+..|+..|..=+-+.|..++....++-... +...-+..++.++..|++.- +++++-..+-..|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-----THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-----hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34556666776666556677777777777765432 12223444555555555443 36777778888899888
Q ss_pred hHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhH
Q 019512 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (340)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (340)
+++.....+.....+-.+.+.++.++-++-..|..++..+...+......+.... .....- .+|.++|--.+..++
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITT 161 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHH-HHHCcCCHHHHHHHH
Confidence 8888777788888888999999999989999999999999876554444444333 334443 788888765566667
Q ss_pred HHHHHHhc-cccchHHHHHhhcChhhHHHHHHHhccCcc-ccchhhhhhhhhhhcCC
Q 019512 233 KLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRESSK-SIQIEAFHVFKLFAANQ 287 (340)
Q Consensus 233 KLL~elLl-dr~N~~vm~~Yi~~~~NLkliM~lL~d~sk-~Iq~EAFhvFKvFVANP 287 (340)
..|+.+-. +..|... .+ +..-+..++.+|++.+. .++..|..++.....+|
T Consensus 162 ~~L~~La~~~~~~~~~---i~-~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 214 (644)
T 2z6h_A 162 DCLQILAYGNQESKLI---IL-ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214 (644)
T ss_dssp HHHHHHHTTCHHHHHH---HH-HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhcCcHHHHH---HH-HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence 77877775 3333222 22 33567788888887652 34445555555444433
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=87.48 E-value=3.6 Score=38.37 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=109.5
Q ss_pred HHHHHHhcchhhHhhhhhccC-CChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHH
Q 019512 156 SVARYVLESQHMKKFFDYIQL-PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (340)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (340)
.....++....+..+...++. ++=++..-|..++-.+...++.....|...+ .+...- .+|.+++..+++.+.-+
T Consensus 115 ~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g---gi~~L~-~lL~~~d~~v~~~A~~a 190 (296)
T 1xqr_A 115 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD---GFSVLM-RAMQQQVQKLKVKSAFL 190 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHH
Confidence 344455665556666666653 4667888888888887777777677788765 344553 78999999999999999
Q ss_pred HHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHH----hc
Q 019512 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLF----AD 310 (340)
Q Consensus 235 L~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl----~~ 310 (340)
|+.+..... -..+++-+..-++.++.||++++..+|-.|...+--++.. .+.........+..|...| ++
T Consensus 191 Ls~L~~~~~---~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~---~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 191 LQNLLVGHP---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD---FPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHCG---GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT---CHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCh---HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC---ChhHHHHHhccHHHHHHHHHHHHHH
Confidence 999986522 1234566778899999999999999999999888777765 2222222121111122222 11
Q ss_pred CCCCCcccchHHHHHHHHHHHhcC
Q 019512 311 FKTDKEDEQFEADKAQVVKEIAGL 334 (340)
Q Consensus 311 f~~d~~D~qF~dEK~~li~~I~~L 334 (340)
.+. -|...+|.++..+-|+.+
T Consensus 265 lq~---~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 265 LQQ---HEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HTT---CGGGHHHHHHHHHHHHHH
T ss_pred ccc---hHHHHHHHHHHHHHHHHH
Confidence 121 123468888887777764
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.17 E-value=31 Score=35.98 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=124.3
Q ss_pred hchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc---cCchhhhhHHHHHHHHHhH
Q 019512 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECIRH 154 (340)
Q Consensus 78 ~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLRecik~ 154 (340)
.+.+..|+..|..=+-+.|..++....++-.... ...-+...++++..|+..- +++++-..+-..|+.+.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-----HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-----hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 5566777776665566777777777766654221 1223444577777766543 4778888888899998888
Q ss_pred HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHH
Q 019512 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (340)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (340)
+.-...+.....+..+.+.++.++=++-..|..++..+-..+......+...+ .+..+- .||.++|--.++.++..
T Consensus 224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv-~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 299 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77777777778888899999999888999999999998876554443333333 344553 78888887778888888
Q ss_pred HHHHhccccchHHHHHhhcChhhHHHHHHHhccCcc
Q 019512 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSK 270 (340)
Q Consensus 235 L~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk 270 (340)
|+.+-. .|-......+.. ..+..++.+|++.+.
T Consensus 300 L~~La~--~~~e~~~~i~~~-~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 300 LQILAY--GNQESKLIILAS-GGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHT--TCHHHHHHHHTT-THHHHHHHHHTTCCC
T ss_pred HHHHhc--CChHHHHHHHHc-CCHHHHHHHHhcCCH
Confidence 885553 344444444443 667888888887654
No 27
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.34 E-value=16 Score=39.90 Aligned_cols=174 Identities=22% Similarity=0.256 Sum_probs=99.7
Q ss_pred cCchhhhhHHHHHHHHHhHHHHHHHHhc--chhhHhhhhhc----cCCChhhhhhHHHHHHHHHhh-----ChHHHHHHH
Q 019512 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDYI----QLPNFDIAADAAATFKELLTR-----HKSTVAEFL 204 (340)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~tfkellt~-----hk~lvaefl 204 (340)
+.||.-...=.++|.++.|=. ..+|. ++.|..+++.+ +.++-||+.-++.++.+++.+ ....+.+|.
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~f--~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~ 893 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKSF--AAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--HHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHCh--HHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 578888888888888887733 33444 34778888754 689999999999999999962 345777999
Q ss_pred HhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc---c----------------ccchHHHHHhhcChhhHHHHHHHh
Q 019512 205 SKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL---D----------------RSNSVVMTRYVSSRENLRILMNLL 265 (340)
Q Consensus 205 ~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLl---d----------------r~N~~vm~~Yi~~~~NLkliM~lL 265 (340)
.+.|-.++.+.-.-+..+..=..=++.-.+|..++. + .+|..++..|++ ++|
T Consensus 894 ~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~---------~~l 964 (1023)
T 4hat_C 894 KNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLA---------NML 964 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHH---------HHH
Confidence 988888866654233333221112222334433322 1 345555555554 445
Q ss_pred ccCcccc---chhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCCcccchHHHHHH
Q 019512 266 RESSKSI---QIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQ 326 (340)
Q Consensus 266 ~d~sk~I---q~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~~D~qF~dEK~~ 326 (340)
++.-+|+ |++.|+. -+|-. -+.+ .++=..-|+=|+. ++.|..|..|+-|.+||+.
T Consensus 965 ~~~fp~~~~~qi~~fv~-~l~~~-~~~~---~~f~~~lrdfli~-~ke~~~~~~~~~~~~~~~~ 1022 (1023)
T 4hat_C 965 SNAFPHLTSEQIASFLS-ALTKQ-CKDL---VVFKGTLRDFLVQ-IKEVGGDPTDYLFAEDKEN 1022 (1023)
T ss_dssp HHHCTTSCHHHHHHHHH-HHHHT-TTCH---HHHHHHHHHHHHH-TTSSSCCGGGGGCC-----
T ss_pred HHhCCCCCHHHHHHHHH-HHHHc-cCCH---HHHHHHHHHHhHH-hHhhcCCChHHHhHHhhhc
Confidence 4443444 5666642 11111 1122 2222333555555 5677887777889999863
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=85.74 E-value=22 Score=32.81 Aligned_cols=154 Identities=9% Similarity=0.094 Sum_probs=85.4
Q ss_pred cHhHHHHHHHhccCc--hhhh--hHHHHHHHHHh---HHHHHHHHhcchhhHhhhhhccCC--ChhhhhhHHHHHHHHHh
Q 019512 124 NIDLLDILIAGYENT--DMAL--HYGAMLRECIR---HQSVARYVLESQHMKKFFDYIQLP--NFDIAADAAATFKELLT 194 (340)
Q Consensus 124 ~peil~~L~~gY~~~--dial--~~G~mLRecik---~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~tfkellt 194 (340)
-|+++..|+....++ +... .+=..|+...+ .+.+..++ .+.+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 478888888777554 3222 12222333322 11110000 01223344455555 56666667766666542
Q ss_pred hChHHHHHHHHhcHHH-HHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccc
Q 019512 195 RHKSTVAEFLSKNYDW-FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQ 273 (340)
Q Consensus 195 ~hk~lvaefl~~nyd~-Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq 273 (340)
--+...... .+.. +.... ..++.+++--.|+.+++.|+.+..... ..+..|+.. .-+..++..++|....++
T Consensus 204 ~~~~~~~~~---~~~~~l~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~-~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 204 FTKANFDKE---SERHFIMQVV-CEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP-ALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp TTHHHHTSH---HHHHHHHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT-THHHHHHHHHHCSSHHHH
T ss_pred HHHHhhhhh---HHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHcCCchHHH
Confidence 111000000 0111 23333 267788888899999999999986442 333445542 456677788899999999
Q ss_pred hhhhhhhhhhhcC
Q 019512 274 IEAFHVFKLFAAN 286 (340)
Q Consensus 274 ~EAFhvFKvFVAN 286 (340)
..|+..+.-++..
T Consensus 277 ~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 277 LQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776654
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=85.34 E-value=26 Score=34.22 Aligned_cols=199 Identities=10% Similarity=0.115 Sum_probs=121.2
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHh--ccCchhhhhHHHHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAMLRE 150 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~mLRe 150 (340)
+.+...+.+..|+..|..=+-+.+..+.....++...... ....+.. ..++..|+.- -.++++--.+-..|..
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~----~~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH----HHHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455667888888888887777777777777776542211 0111111 1111111111 1223333333334443
Q ss_pred H-HhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhC-hHHHHHHHHhcHHHHHHHHHHhhccCCCcchh
Q 019512 151 C-IRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRH-KSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 151 c-ik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~h-k~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
+ ...+.....+.....+..+...+..+++++-..|..++.-+.... ...+......+ ....+ ..||.+++-=+.
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g---~i~~L-~~LL~~~d~~i~ 418 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 418 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC---CHHHH-HHHhcCCCHHHH
Confidence 3 335556666777777888889999999999999988888776543 22333333333 23344 378888888888
Q ss_pred hhhHHHHHHHhc---cccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhh
Q 019512 229 RQAVKLLGDILL---DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVF 280 (340)
Q Consensus 229 RQSLKLL~elLl---dr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvF 280 (340)
+.+|..|..|+- .-...+-+.++|....-+..+-.|..+++..|+--|+.+.
T Consensus 419 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 419 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 889998888873 1123444556677777777777777777777776666654
No 30
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.04 E-value=10 Score=41.04 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=88.5
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCc--hhhhhHHHHHHHHHhHHHH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSV 157 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~--dial~~G~mLRecik~e~l 157 (340)
++..|+..+..=+.+.|+-+......+...- +. . ..+.|+..|+.+..++ .+-..++..|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4555666666667888888888777766421 11 2 2367888888886443 3333444444444432110
Q ss_pred H------HHHhcchhhHhhhhhcc-CCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhh
Q 019512 158 A------RYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (340)
Q Consensus 158 a------~~iL~~~~f~~fF~yv~-~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (340)
. ..-.....+-.+++.++ .++.++...|+.++.+++....+.+.. .++.+...+- .++.+++-.+|++
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~-~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLL-PQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHG-GGGGCSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHH-HHHcCCcHHHHHH
Confidence 0 00001123345566666 588999999999999998654432222 3355666664 6777777777888
Q ss_pred hHHHHHHHhcc
Q 019512 231 AVKLLGDILLD 241 (340)
Q Consensus 231 SLKLL~elLld 241 (340)
+++.||.+...
T Consensus 195 a~~al~~l~~~ 205 (1230)
T 1u6g_C 195 TIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 88888777643
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=85.03 E-value=11 Score=36.83 Aligned_cols=199 Identities=13% Similarity=0.168 Sum_probs=130.7
Q ss_pred HHhhchHHHHHhhCCCCChhh-----hhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHh--ccCchhhhhHHHH
Q 019512 75 FFRENTLRLLITCLPKLNLEA-----RKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAM 147 (340)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~-----rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~m 147 (340)
+...+.+..|+..+..-+.+. .+.++....++.+.+.. .+....+ ..++..|+.. .+++++-..+-..
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~--~~~~~~~---~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP--APPLDAV---EQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS--CCCHHHH---HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc--hhHHHHH---HhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445567778888887655543 33344444445442211 1112222 2344444433 3455666666666
Q ss_pred HHHHHhHH-HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcc
Q 019512 148 LRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (340)
Q Consensus 148 LRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (340)
|+.+..+. .....+.....+..+.+++..++-.+..-|..++..+.+.........+... ....+- .||.+++--
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g---~l~~L~-~LL~~~~~~ 331 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVFP-SLLTNPKTN 331 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGCC--CTTCSSHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhcc---chHHHH-HHhcCCCHH
Confidence 66666543 4455667777788888999999999999999999999887776665555543 233443 789999999
Q ss_pred hhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 227 tkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
+++.+...|+.|...... ....+-+..-+..++.+|++.+..+|-||-....=+..
T Consensus 332 v~~~A~~aL~nl~a~~~~---~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHH---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999854332 33445556778899999999999999998776654443
No 32
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.20 E-value=31 Score=34.93 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=113.5
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHHhHHHH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSV 157 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~l 157 (340)
++..+...+..-+.+.|+.+..++..+....... ...|+. +.++..++.+. .++++...+-..+..+++++.-
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG---CHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH---HHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 4555666677778888988888888887643221 123332 36777776654 3456666666666666655321
Q ss_pred ----------------------HHHHhcchhhHhhhhhcc-------CCChhhhhhHHHHHHHHHhhChHHHHHHHHhcH
Q 019512 158 ----------------------ARYVLESQHMKKFFDYIQ-------LPNFDIAADAAATFKELLTRHKSTVAEFLSKNY 208 (340)
Q Consensus 158 ----------------------a~~iL~~~~f~~fF~yv~-------~~~FdiasDAf~tfkellt~hk~lvaefl~~ny 208 (340)
.+..+ .+.+-.++..+. ..++.+...|...+..+-..-.+ .-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~ 364 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIV 364 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------GGH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------hhH
Confidence 00000 011112233332 23445544444444444322111 123
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 209 DWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 209 d~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
+.++.... ..+.+++.-.|..++..||.+...-. -..+..|+ +.-+..+..+|.|++..++..|...+.-|..
T Consensus 365 ~~~l~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 365 PHVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45566664 77889999999999999999985432 13344555 4567888899999999999999988877665
No 33
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.62 E-value=8.6 Score=42.43 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=57.2
Q ss_pred cCchhhhhHHHHHHHHHhHHHHHHHHhc--chhhHhhhhhc----cCCChhhhhhHHHHHHHHHhh---ChHHHHHHHHh
Q 019512 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDYI----QLPNFDIAADAAATFKELLTR---HKSTVAEFLSK 206 (340)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~tfkellt~---hk~lvaefl~~ 206 (340)
+.||.-...=..||.+..|=. ..+|. .+.|..+++-+ +.+.-+|+.-+..++.+++.+ +...+.+|..+
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~~f--~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~ 919 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSHCF--PAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT 919 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG--GGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHh--HHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 467777777778888777721 22333 34566666543 689999999999999999975 66677799998
Q ss_pred cHHHHHHHHH
Q 019512 207 NYDWFFAEYN 216 (340)
Q Consensus 207 nyd~Ff~~yn 216 (340)
.|-.+....-
T Consensus 920 ~~~~~~~~i~ 929 (1073)
T 3gjx_A 920 YFCDILQHIF 929 (1073)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766543
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=77.98 E-value=24 Score=33.51 Aligned_cols=164 Identities=14% Similarity=0.216 Sum_probs=105.9
Q ss_pred HHHhhchHHHHHhhC-CCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHH----hccCc--hhhhhHHH
Q 019512 74 EFFRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA----GYENT--DMALHYGA 146 (340)
Q Consensus 74 ei~~~dll~~Li~~l-~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~----gY~~~--dial~~G~ 146 (340)
.+...+.+..|+..| ..=+-+.++.++....+|-....+.+ .. +......+..|+. +.+.+ ++.-.+..
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk---~~-i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK---AD-ICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH---HH-HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh---HH-HHHhcCcHHHHHHHhccCCCcccHHHHHHHHH
Confidence 344556677777753 33455666665544444322111111 11 2212223333322 22221 35566667
Q ss_pred HHHHHHh----HHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccC
Q 019512 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (340)
Q Consensus 147 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (340)
.||-+.. .+.-...+.+...+-.+.+.+..+++++-..|-.++..+-..++.-.......+- +... ..|+.+
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~---i~~L-v~LL~s 316 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VSML-KNLIHS 316 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH---HHHH-HTTTTC
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC---HHHH-HHHHhC
Confidence 7887664 5666677888888999999999999999999999999987667766666666553 3444 389999
Q ss_pred CCcchhhhhHHHHHHHhccccch
Q 019512 223 SNYITRRQAVKLLGDILLDRSNS 245 (340)
Q Consensus 223 ~NYVtkRQSLKLL~elLldr~N~ 245 (340)
++--+++.+..-|..|..++.+.
T Consensus 317 ~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 317 KHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887764
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=77.08 E-value=33 Score=36.75 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=131.8
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHH-hhhcHhHHHHHHHhccCc-h-hh-hhHHHH
Q 019512 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY-LEANIDLLDILIAGYENT-D-MA-LHYGAM 147 (340)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Y-l~~~peil~~L~~gY~~~-d-ia-l~~G~m 147 (340)
...+.+.+.+..|+..|..=+.+.|+.++...+++..... |...+ ...-.+++.-|+.--... + .. ..+=.-
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~A 604 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3456677888888888877788889988888777765321 11100 000012333333322211 1 10 112223
Q ss_pred HHHHHhH-HHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcc
Q 019512 148 LRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (340)
Q Consensus 148 LRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (340)
|+-+..+ +.....+.....+..+.+++..++-.|-.-|..++.-+.+ ++.....|.. +.. -....- .|+.+++.-
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~-~~g-~l~~Lv-~LL~s~d~~ 680 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEG-NND-RVKFLA-LLCEDEDEE 680 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHS-SSS-HHHHHH-HGGGCSSHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHh-ccC-cHHHHH-HHhcCCCHH
Confidence 4444444 5666677777777888888888888999999999988765 6666667763 222 234443 799999999
Q ss_pred hhhhhHHHHHHHhc-cccchHHHHHhhcC-hhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 227 TRRQAVKLLGDILL-DRSNSVVMTRYVSS-RENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 227 tkRQSLKLL~elLl-dr~N~~vm~~Yi~~-~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
+|+.+.-.|+-|-. ++.+ .++|-+ ..-+..+..||++.+..+|.+|--..-=.+.
T Consensus 681 vq~~Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 681 TATACAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999986 3333 234444 7888999999999999999999866544443
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=76.98 E-value=45 Score=30.63 Aligned_cols=188 Identities=12% Similarity=0.131 Sum_probs=109.0
Q ss_pred HHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHHhHHHHH
Q 019512 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSVA 158 (340)
Q Consensus 81 l~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~la 158 (340)
+..+...+..-+.+.|+.+..++..+....... + ..|+.. +++..++.+- .++++...+-..+..+.+.+.-.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-~--~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-M--ETYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG-C--TTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-H--HHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 445555566678888998999888887643211 0 122221 5555555443 34556555555555555443100
Q ss_pred HHHhc----------------------chhhHhhhhhccC-------CChhhhhhHHHHHHHHHhhChHHHHHHHHhcHH
Q 019512 159 RYVLE----------------------SQHMKKFFDYIQL-------PNFDIAADAAATFKELLTRHKSTVAEFLSKNYD 209 (340)
Q Consensus 159 ~~iL~----------------------~~~f~~fF~yv~~-------~~FdiasDAf~tfkellt~hk~lvaefl~~nyd 209 (340)
. .+. ...+-.+++.+.. .++.+...|..++..+-..-++- -..
T Consensus 294 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~-------~~~ 365 (462)
T 1ibr_B 294 A-IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-------IVP 365 (462)
T ss_dssp H-HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-------HHH
T ss_pred H-HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH-------HHH
Confidence 0 000 0111122233321 23445555555555554433221 123
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc
Q 019512 210 WFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA 285 (340)
Q Consensus 210 ~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA 285 (340)
.++.... .++.++++-.|.-++..||.+...-. -..+..++ +.-+..+..+|+|++..++..|...+.-|..
T Consensus 366 ~~~~~l~-~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 366 HVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-TTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCCChHHHHHHHHHHHHHhcCCc-HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555554 78889999999999999999985322 12233344 5678889999999999999999998877665
No 37
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=75.29 E-value=72 Score=32.13 Aligned_cols=187 Identities=14% Similarity=0.192 Sum_probs=112.1
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--CchhhhhHHHHHHHHHhHHHH
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSV 157 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~l 157 (340)
++..|...+..-+.+.|+.+..++..+.....+. ...|+. ++++..++.+-. ++++...+-..+..+++...-
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555667888888888888777643211 122332 167776666654 456666666666666655321
Q ss_pred ------------------HHHHhcchhhHhhhhhccC-------CChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHH
Q 019512 158 ------------------ARYVLESQHMKKFFDYIQL-------PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFF 212 (340)
Q Consensus 158 ------------------a~~iL~~~~f~~fF~yv~~-------~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff 212 (340)
.+..+ ...+..++..+.. ..+.+...|..++..+-..... .-...++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-------~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-------HILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-------GGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-------hHHHHHH
Confidence 11111 2223344444432 3466766677777665443221 2234556
Q ss_pred HHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhh
Q 019512 213 AEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 213 ~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
.... .++.+++.-.|..++..||.+..... ...+..|+. .-+..+...|+|++..++..|...+--+
T Consensus 372 ~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l 438 (861)
T 2bpt_A 372 EFVE-QNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRI 438 (861)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 6664 78889999999999999999983321 244556664 4567778888999998888777655433
No 38
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.38 E-value=50 Score=32.66 Aligned_cols=162 Identities=14% Similarity=0.204 Sum_probs=104.8
Q ss_pred HHHhhchHHHHHhh-CCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHH----HhccCc--hhhhhHHH
Q 019512 74 EFFRENTLRLLITC-LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI----AGYENT--DMALHYGA 146 (340)
Q Consensus 74 ei~~~dll~~Li~~-l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~----~gY~~~--dial~~G~ 146 (340)
.+...+.+..|+.. +..=+-+.++.++....+|-....+.+. -+......+..|+ .+.+.+ ++.-.+..
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 34455677777776 4444566666555433333221111111 1221222333332 222222 35666677
Q ss_pred HHHHHHh----HHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccC
Q 019512 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (340)
Q Consensus 147 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (340)
.||-+.. .+.....+.+...+-.+.+.+..+++++-..|-.++..+-..++..........- +.-. ..|+.+
T Consensus 357 aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~---I~~L-v~LL~s 432 (458)
T 3nmz_A 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VSML-KNLIHS 432 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH---HHHH-HTTTTC
T ss_pred HHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHH-HHHHhC
Confidence 7887664 5666677888888889999999999999999999999997677777666666553 3444 389999
Q ss_pred CCcchhhhhHHHHHHHhcccc
Q 019512 223 SNYITRRQAVKLLGDILLDRS 243 (340)
Q Consensus 223 ~NYVtkRQSLKLL~elLldr~ 243 (340)
++--+++.+.--|..|+.++.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999987653
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=72.99 E-value=5.3 Score=34.75 Aligned_cols=132 Identities=15% Similarity=0.217 Sum_probs=96.0
Q ss_pred hhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhcc-CCCcchhhhhHHHHHHHhccccchHH
Q 019512 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE-SSNYITRRQAVKLLGDILLDRSNSVV 247 (340)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~-s~NYVtkRQSLKLL~elLldr~N~~v 247 (340)
.|++.++..+...--.|...+..++..|+.+. ..+|.+++...- +++. .+|...+..+++.||.|...-. .-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----~~~~~~i~~~L~-~~l~kd~~~~V~~~a~~~l~~la~~l~--~~ 91 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----NGEYGALVSALK-KVITKDSNVVLVAMAGKCLALLAKGLA--KR 91 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----CCCCHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----CCCHHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHHh--hh
Confidence 46677788889988899999999988765543 467888988885 8885 8999999999999999983211 11
Q ss_pred HHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHH--------HhHHHHHHHHhc
Q 019512 248 MTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILV--------ANRSKLLRLFAD 310 (340)
Q Consensus 248 m~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~--------~Nr~kLi~fl~~ 310 (340)
+..|+ +.-+..++..|+|++..++--|....+-++.+.. .+.+...|. .=|...+.++..
T Consensus 92 ~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~ll~~l~~~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 92 FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQESIVESLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 22343 4468899999999999999999999988887653 233333332 125555666655
No 40
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.71 E-value=84 Score=31.72 Aligned_cols=111 Identities=9% Similarity=0.123 Sum_probs=72.1
Q ss_pred hhhhccCC--ChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHH
Q 019512 170 FFDYIQLP--NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV 247 (340)
Q Consensus 170 fF~yv~~~--~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~v 247 (340)
+...+..+ +-++...|+..+..+...-..-....... +.+....- .++.+++.-.|+.+++.|+.+.... ...
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~il~~l~-~~~~~~~~~vr~~a~~~l~~l~~~~--~~~ 251 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVC-EATQCPDTRVRVAALQNLVKIMSLY--YQY 251 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHHS--GGG
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHh--HHH
Confidence 33455555 67888888888887764211110000000 12444443 6777888888999999999999543 344
Q ss_pred HHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 248 MTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 248 m~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
+..|+. +.-+..++..+.+....++..|+..+.-++.+
T Consensus 252 ~~~~~~-~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 252 METYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp CHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 556665 34577777788888889999999888777643
No 41
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=69.65 E-value=65 Score=31.20 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=102.0
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCc-------hhhh
Q 019512 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-------DMAL 142 (340)
Q Consensus 70 qLa~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~-------dial 142 (340)
.+|.-+..++.+..+...+..=.||.--|+-..|.-++-+.. ..+.+||..|-|.+.....+-=.. .+-=
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 344444555556677778888899999999999999886432 356799999988765554433222 2333
Q ss_pred hHHHHHHHHHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHh--hChHHHHHHHHhcHHHH
Q 019512 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLT--RHKSTVAEFLSKNYDWF 211 (340)
Q Consensus 143 ~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt--~hk~lvaefl~~nyd~F 211 (340)
..|.+|-+=.-+..+.+||-..+.+.-+...+..++=-|.-+||..||--.. +-++-|...|..|=++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kL 302 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKL 302 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHH
Confidence 4677777777788888888888888888889999999999999999996554 22366778888886653
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=68.66 E-value=40 Score=32.14 Aligned_cols=140 Identities=10% Similarity=0.158 Sum_probs=86.7
Q ss_pred hhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHH
Q 019512 170 FFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT 249 (340)
Q Consensus 170 fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~ 249 (340)
++.+++.++-+|-..|..++..+...... ++. .+.++.... .++.++||-+|..++..+|.+...=. ..
T Consensus 446 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~---~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~-~~--- 514 (588)
T 1b3u_A 446 CMAWLVDHVYAIREAATSNLKKLVEKFGK---EWA---HATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCG-QD--- 514 (588)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHH---HHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHH-HH---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhH---HHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcC-HH---
Confidence 34456667777777777777777654332 221 345555664 68889999999999999999863100 00
Q ss_pred HhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCCcccchHHHHHHHHH
Q 019512 250 RYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVK 329 (340)
Q Consensus 250 ~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~~D~qF~dEK~~li~ 329 (340)
.| -+.-+..++.+|+|+..+++..|...+..++..=.. . .+ .+.++..|.....|++ . +-|.....
T Consensus 515 ~~--~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~---~~---~~~~~p~l~~l~~d~d-~---~vr~~a~~ 580 (588)
T 1b3u_A 515 IT--TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--S---TL---QSEVKPILEKLTQDQD-V---DVKYFAQE 580 (588)
T ss_dssp HH--HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--H---HH---HHHHHHHHHHHTTCSS-H---HHHHHHHH
T ss_pred HH--HHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--h---hh---HHHHHHHHHHHcCCCc-h---hHHHHHHH
Confidence 11 135667888999999999999998888776643211 1 11 1455556666555442 2 44455544
Q ss_pred HHhcC
Q 019512 330 EIAGL 334 (340)
Q Consensus 330 ~I~~L 334 (340)
.+..+
T Consensus 581 al~~l 585 (588)
T 1b3u_A 581 ALTVL 585 (588)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44444
No 43
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=67.40 E-value=14 Score=35.48 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=42.3
Q ss_pred chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhh-cHhHHHHHHHh
Q 019512 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAG 134 (340)
Q Consensus 79 dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~-~peil~~L~~g 134 (340)
++|..|+ +...+|.+.|..++.|.+.+|| +.+|+++++.+ +|..++.++..
T Consensus 71 ~lL~nL~-~~~~~~~~~rE~aarII~ssLR----NNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 71 ALLANLS-LNENLPLTLRELSTRVITSCLR----NNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHH-HCTTSCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHH-hhccCChhHHHHHHHHHHHHHc----cCHHHHHHHHHhChhHHHHHHHH
Confidence 5778888 5556999989999999999999 44588999877 79999999854
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=66.91 E-value=75 Score=31.62 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=66.1
Q ss_pred hhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccc-------
Q 019512 172 DYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN------- 244 (340)
Q Consensus 172 ~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N------- 244 (340)
..+..++-.|-.-|...+-.+...++.++-+ ..++.... .+|.++|...++.++..|+++--+...
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~-~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLR-DLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHH-HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHH-HHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 3444556666666666666666555655432 35667774 888999999999999999998765531
Q ss_pred ---hHHHHHhhc--------------------C----hhhHHHHHHHhccCccccchhhhhhhhhh
Q 019512 245 ---SVVMTRYVS--------------------S----RENLRILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 245 ---~~vm~~Yi~--------------------~----~~NLkliM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
+.-+.+-++ + ..-+..+..+|++.+..|.+||-..+--+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 111121111 1 12344455568889999999998766444
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.84 E-value=1.7e+02 Score=30.75 Aligned_cols=138 Identities=15% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhh-chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCc-hhhhhH
Q 019512 67 ACAQLTAEFFRE-NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-DMALHY 144 (340)
Q Consensus 67 ~~~qLa~ei~~~-dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~-dial~~ 144 (340)
...+++.++.+. +-+..|+..|..=+|..|-.+.++...++..+.. -+=+++...|.-+..|+.--+++ |+.=+-
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~---~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRne 185 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP---QVQQIILVSPMGVSRLMDLLADSREVIRND 185 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH---HHHHHHHHSTTHHHHHHGGGGCSSHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH---HHHHHHHhCcccHHHHHHHHhCchHHHHHH
Confidence 346777777544 7899999999999999999999999999874322 13456777888888888776654 221111
Q ss_pred HH-HHHHHHh-HHHHHHHHhcchhhHhhhhhccCCCh----hhhhhHHHHHHHHHhhChHHHHHHHHhc
Q 019512 145 GA-MLRECIR-HQSVARYVLESQHMKKFFDYIQLPNF----DIAADAAATFKELLTRHKSTVAEFLSKN 207 (340)
Q Consensus 145 G~-mLRecik-~e~la~~iL~~~~f~~fF~yv~~~~F----diasDAf~tfkellt~hk~lvaefl~~n 207 (340)
+. +|-+..+ +..+-+.+=.-.-|..+|+-++...- .|.+|++..+..||..+.+-=.-|.+.+
T Consensus 186 allLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 11 1112222 22333333333457788877765554 7888999999999888764433344433
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=58.72 E-value=1.1e+02 Score=32.66 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=59.0
Q ss_pred cCchhhhhHHHHHHHHHhHHHHHHHHhc-ch-hhHhhhh----hccCCChhhhhhHHHHHHHHHhhCh-----HHHHHHH
Q 019512 136 ENTDMALHYGAMLRECIRHQSVARYVLE-SQ-HMKKFFD----YIQLPNFDIAADAAATFKELLTRHK-----STVAEFL 204 (340)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~-~~-~f~~fF~----yv~~~~FdiasDAf~tfkellt~hk-----~lvaefl 204 (340)
+.||+.-.+=.++..++++-. ..++. ++ .+..+++ -+..+.-+++.-|...+.++++..+ ..+..|.
T Consensus 816 ~~pd~~~~~f~ll~~i~~~~~--~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~ 893 (1049)
T 3m1i_C 816 EYPEHRVEFYKLLKVINEKSF--AAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1049)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--HHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhCH--HHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 467777776555555554321 22332 32 2444443 3368899999999999999998643 4566777
Q ss_pred HhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 019512 205 SKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (340)
Q Consensus 205 ~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elL 239 (340)
.+.|-.+....-..|..+. -|-+++...++|
T Consensus 894 ~~~~~~l~~~~~~~l~~~~----h~s~~~~~~~~l 924 (1049)
T 3m1i_C 894 KNYFFIFVSETFFVLTDSD----HKSGFSKQALLL 924 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTT----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch----HhhhHHHHHHHH
Confidence 7666666655433444443 566666666665
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=55.23 E-value=1.7e+02 Score=29.25 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=62.8
Q ss_pred hccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHH----H
Q 019512 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV----M 248 (340)
Q Consensus 173 yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~v----m 248 (340)
++..++=+|--=|..++..+...|+.++.+ +.+.++ .++.+++--.||.++.+|+.+.. ..|... +
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~-----~~l~d~d~~Ir~~alelL~~l~~-~~nv~~iv~eL 390 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIV-----DCLKDLDVSIKRRAMELSFALVN-GNNIRGMMKEL 390 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHH-----HGGGSSCHHHHHHHHHHHHHHCC-SSSTHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHH-----HHccCCChhHHHHHHHHHHHHcc-cccHHHHHHHH
Confidence 344444455555666666666666654432 333333 33444455555666666655542 333221 2
Q ss_pred HHhhcC------------------------hhhHHHHHHHhccCccccchhhhhhhhhhhc-CCCCChhHH
Q 019512 249 TRYVSS------------------------RENLRILMNLLRESSKSIQIEAFHVFKLFAA-NQNKPPDIV 294 (340)
Q Consensus 249 ~~Yi~~------------------------~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA-NP~K~~~I~ 294 (340)
..|+.+ ...+..++.+|++....++-|+.++++-.+. +|.--+.+.
T Consensus 391 ~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v 461 (618)
T 1w63_A 391 LYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTV 461 (618)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHH
Confidence 233321 1256778889999988899999998887665 665444333
No 48
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=55.05 E-value=1.3e+02 Score=28.86 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=76.1
Q ss_pred CCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc--hHHHHH
Q 019512 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLI 85 (340)
Q Consensus 8 ~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li 85 (340)
+.++|.++|+.+++.. .+ +.+.+.|..+|..|-.. |. ...+++...+ .|..++
T Consensus 64 ~~~sP~~yi~~L~~~~---------~~-------~kl~~~L~sL~v~Lrt~----~~-----sWV~~F~~~Gl~~Ll~iL 118 (383)
T 3eg5_B 64 SSRSAMMYIQELRSGL---------RD-------MHLLSCLESLRVSLTSH----PV-----SWVQTFGAEGLASLLDIL 118 (383)
T ss_dssp -CCCHHHHHHHHTTTC---------CH-------HHHHHHHHHHHHHHHHS----CH-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------cc-------hhHHHHHHHHHHHHhhC----cc-----HHHHHHHHccHHHHHHHH
Confidence 3678999998886421 11 24557788888887522 22 2445555443 233333
Q ss_pred hhCC--------CCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHH
Q 019512 86 TCLP--------KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSV 157 (340)
Q Consensus 86 ~~l~--------~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~l 157 (340)
..+. .-+.+-.-.+...+..++..+. ..+++..||+.+..|..+-+.+.... |.. --|-|
T Consensus 119 ~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~-----G~~~vl~~~~~i~~l~~~L~s~~~~~------~~~-aleLL 186 (383)
T 3eg5_B 119 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVPNM------MID-AAKLL 186 (383)
T ss_dssp HHHHTCC-------CHHHHHHHHHHHHHHTSSHH-----HHHHHHTCSSHHHHHHHTCCTTSHHH------HHH-HHHHH
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHhcchh-----hHHHHHcChHHHHHHHHHhCCCchHH------HHH-HHHHH
Confidence 3322 1122222234445555555443 48899999999999999876555421 111 12344
Q ss_pred HHHHhcchhhHhhhhhccCCC-hhhhhhHHHHHHH
Q 019512 158 ARYVLESQHMKKFFDYIQLPN-FDIAADAAATFKE 191 (340)
Q Consensus 158 a~~iL~~~~f~~fF~yv~~~~-FdiasDAf~tfke 191 (340)
+...++++ ..+ ++..-+|+..+++
T Consensus 187 ~~lc~~~~----------~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 187 SALCILPQ----------PEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHTCCS----------STTHHHHHHHHHHHHHH
T ss_pred HHHHhCcC----------cCCcHHHHHHHHHHHHH
Confidence 44444431 123 7888888888886
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=54.21 E-value=63 Score=28.70 Aligned_cols=181 Identities=12% Similarity=0.174 Sum_probs=96.4
Q ss_pred CCCChhhhhcHHHHHHH-HhhhhccCccc--hhHHhhhcHhHHHHHHHhc-cCchhhh--hHHHHHHHHHhHH---HHH-
Q 019512 89 PKLNLEARKDATQVVAN-LQRQQVHSKLI--ASDYLEANIDLLDILIAGY-ENTDMAL--HYGAMLRECIRHQ---SVA- 158 (340)
Q Consensus 89 ~~L~fE~rKdv~~If~~-llr~~~~~~~p--~v~Yl~~~peil~~L~~gY-~~~dial--~~G~mLRecik~e---~la- 158 (340)
..=+|..||.+..-... ++... .+.. ..+ ..++++.|..+- .++++.. .+...|....++- .+.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~--~~i~~~~~~----~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQT--KKLKSTSQN----YSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGC--CCBCCTTCC----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--CccccCccc----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45578889988876666 66421 1111 112 257888887777 4554432 2222222222100 000
Q ss_pred HHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 019512 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (340)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~el 238 (340)
.|.- ..+-.+++.+.-..=.|..-|..++..+...-.+ .+.+ ...+....... ..|.+.|.=+|.+++.+|+.+
T Consensus 100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~--~~l~~ll~~l~-~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASS--GRNEDMLKDIL-EHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTT--CTTHHHHHHHH-HHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccC--CcHHHHHHHHH-HHHcCCChHHHHHHHHHHHHH
Confidence 1100 1122344444444444433333333333321100 0000 11445566664 678899999999999999999
Q ss_pred hccccch-HHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhh
Q 019512 239 LLDRSNS-VVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKL 282 (340)
Q Consensus 239 Lldr~N~-~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKv 282 (340)
+-.-.-. ..+..|+ ++.-+..++.+|.|..+.++-.|+-.+-.
T Consensus 174 ~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9543221 4445555 34567788889999999998877765543
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=52.72 E-value=26 Score=36.78 Aligned_cols=62 Identities=27% Similarity=0.348 Sum_probs=50.1
Q ss_pred hhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhh
Q 019512 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVF 280 (340)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvF 280 (340)
.||++++|-+|..|++||..|+..|... +-...++.|.-+-.+|.+|.|++.-||=||-.+.
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 5889999999999999999999777642 3333455889999999999999888888776544
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=52.34 E-value=1.9e+02 Score=28.91 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=26.9
Q ss_pred hccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHH
Q 019512 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEY 215 (340)
Q Consensus 173 yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~y 215 (340)
.+.-++-.|.+.|...+.++...+++. .+.+....+.++...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRIL 228 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 345678899999999999987766553 233334444444433
No 52
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=49.60 E-value=49 Score=31.99 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=80.8
Q ss_pred CChhhhhhHHHHHHHHHhhChHHHHHHHHhc-HHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcCh
Q 019512 177 PNFDIAADAAATFKELLTRHKSTVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSR 255 (340)
Q Consensus 177 ~~FdiasDAf~tfkellt~hk~lvaefl~~n-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~ 255 (340)
++=+.--+|.-+++.++-.-+..|.||+..+ .+....... . .++|| .-.+|+-|++|+. +..=|.--|+++
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~--~~gN~--q~Y~L~AL~~LM~---~v~Gm~gvvs~~ 201 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-A--ADHNY--QSYILRALGQLML---FVDGMLGVVAHS 201 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-T--SCHHH--HHHHHHHHHHHTT---SHHHHHHHHHCH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-h--cChHH--HHHHHHHHHHHHh---ccccccchhCCH
Confidence 4445557888999999989999999999976 333332221 1 15555 6679999999985 455666777899
Q ss_pred hhHHHHHHHhccCccccchhhhhhhhhhhcCCC
Q 019512 256 ENLRILMNLLRESSKSIQIEAFHVFKLFAANQN 288 (340)
Q Consensus 256 ~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~ 288 (340)
+-++.+-.++.+...+|.=-|--+..+||-+..
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 999999999999889998889999999999764
No 53
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=48.27 E-value=2.5e+02 Score=29.03 Aligned_cols=198 Identities=13% Similarity=0.073 Sum_probs=111.4
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCch--hhhhHHHHHHH-
Q 019512 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD--MALHYGAMLRE- 150 (340)
Q Consensus 74 ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~d--ial~~G~mLRe- 150 (340)
.+...+.+..|+..|..=+-+.|+.++....++....... ...+ ....++..|+..-..++ +--.+-..|+.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~----~~~v-~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA----KMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH----HHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh----HHHH-HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556677888888887777777777777777776532111 1111 12334444444443322 22222223332
Q ss_pred HHhHHHHHHHHhcchhhHhhhhhccCCChhhhh-hHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhh
Q 019512 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAA-DAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (340)
Q Consensus 151 cik~e~la~~iL~~~~f~~fF~yv~~~~Fdias-DAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkR 229 (340)
|..++.....+.....+..+...+..++-+... .|...+..+ ..++......+..+ .....- .++.+++--+++
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L-s~~~~~~~~i~~~g---~l~~Ll-~lL~~~~~~~~~ 378 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAG---GMQALG-LHLTDPSQRLVQ 378 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTSTTHHHHHHHTT---HHHHHG-GGTTCSCHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcChHHHHHHHHhc---hHHHHH-HHHcCCchHHHH
Confidence 222344444455555566666666555443321 122222222 12222222222222 233442 678888888899
Q ss_pred hhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCC
Q 019512 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQ 287 (340)
Q Consensus 230 QSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP 287 (340)
.++..|+.|...... ......-+..++.+|++++..++..|..++.-...++
T Consensus 379 ~a~~~L~~L~~~~~~------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 379 NCLWTLRNLSDAATK------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp HHHHHHHHHHTTCTT------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhccchh------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 999999998755433 2234567889999999999999999998887776654
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=47.75 E-value=2.2e+02 Score=28.24 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=119.7
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchh--hhhHHHHHHH
Q 019512 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM--ALHYGAMLRE 150 (340)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~di--al~~G~mLRe 150 (340)
..+...+.+..|+..|..=+-+.|..++....++...... ....+ ....++..|+.....++. -..+-..|+.
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~----~~~~v-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG----AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT----HHHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch----hHHHH-HHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 3456678889999999887888888888888887764311 11112 123455555555544332 2222223444
Q ss_pred HH-hHHHHHHHHhcchhhHhhhhhccCCChhhh-hhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchh
Q 019512 151 CI-RHQSVARYVLESQHMKKFFDYIQLPNFDIA-ADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 151 ci-k~e~la~~iL~~~~f~~fF~yv~~~~Fdia-sDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
.. ..+.....+.....+..+...++.++.+-. --|...+.. |..++......+..+ .....- .++.+++--.+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n-Ls~~~~~~~~l~~~g---~l~~L~-~ll~~~~~~~~ 241 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV-LSVCSSNKPAIVEAG---GMQALG-LHLTDPSQRLV 241 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHH-HTTCTTHHHHHHHTT---HHHHHH-TTTTCSCHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHH-HhcCcccHHHHHHCC---CHHHHH-HHHhcCCHHHH
Confidence 33 345555556666666666666665543221 112222322 234454444444443 344453 78888888899
Q ss_pred hhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 229 RQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
+.++..|+.+-...... ..-..-+..++.+|++.+..++-.|-.++.-...+
T Consensus 242 ~~a~~~L~nL~~~~~~~------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHHHGGGCTTC------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcchhh------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999997554332 22346788899999999999999998888666554
No 55
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=47.69 E-value=2.6e+02 Score=28.98 Aligned_cols=170 Identities=11% Similarity=0.040 Sum_probs=97.0
Q ss_pred HhHHHHHHHhccC---chhhhhHHHHHHHHHhHHH---HHHHHhcchhhHhhhhhcc-C--CChhhhhhHHHHHHHHHhh
Q 019512 125 IDLLDILIAGYEN---TDMALHYGAMLRECIRHQS---VARYVLESQHMKKFFDYIQ-L--PNFDIAADAAATFKELLTR 195 (340)
Q Consensus 125 peil~~L~~gY~~---~dial~~G~mLRecik~e~---la~~iL~~~~f~~fF~yv~-~--~~FdiasDAf~tfkellt~ 195 (340)
|.++..++.+|.. +..--..|.+++++-..+. ...-++. ..+...+.-++ . ..=|+..++|.-+..++..
T Consensus 725 ~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 725 PQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 6778888888865 3333445566664432221 1111111 11222222121 1 2347888999999999988
Q ss_pred ChHHHHHHHHhc-HHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcC--hhhHHHHHHHhccCcccc
Q 019512 196 HKSTVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSS--RENLRILMNLLRESSKSI 272 (340)
Q Consensus 196 hk~lvaefl~~n-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~--~~NLkliM~lL~d~sk~I 272 (340)
++..+-. ... ++.++...- ..+.+.+.-+.+.++..|++++..-........++.. +.-+..+|..+.+....-
T Consensus 804 ~~~~~~~--~~~~~~~i~~~~~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 804 KPDLFLC--ERLDVKAVFQCAV-LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp CGGGGGC--TTSCHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred CcHHHcC--CcccHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 8866521 222 677777774 7788999999999999999999754323344444432 223345555666666555
Q ss_pred chhhhh-hhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcC
Q 019512 273 QIEAFH-VFKLFAANQNKPPDIVSILVANRSKLLRLFADF 311 (340)
Q Consensus 273 q~EAFh-vFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f 311 (340)
.++..- |+ ..+..+|.+.+..|+.+.
T Consensus 881 ~~~~~~~il-------------~~l~~~~~~~~~~~l~~~ 907 (963)
T 2x19_B 881 LMDCFADIL-------------FALNKHCFSLLSMWIKEA 907 (963)
T ss_dssp GHHHHHHHH-------------HHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------HHHHHHChHHHHHHHHHH
Confidence 554322 11 123345666666676654
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.90 E-value=1.3e+02 Score=24.74 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=62.5
Q ss_pred hhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccch
Q 019512 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNS 245 (340)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~ 245 (340)
.+..+.+.+..++-+|-.-|...+..+ .++.. ....- .++.+++.-+|+.++.-||.+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~--~~~~~------------~~~L~-~~l~d~~~~vr~~a~~aL~~~------- 170 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEI--GDERA------------VEPLI-KALKDEDGWVRQSAADALGEI------- 170 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH--CCGGG------------HHHHH-HHTTCSSHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCHHH------------HHHHH-HHHcCCCHHHHHHHHHHHHHh-------
Confidence 344455556667777777777777665 22222 22332 677888888999999998876
Q ss_pred HHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCC
Q 019512 246 VVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNK 289 (340)
Q Consensus 246 ~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K 289 (340)
.+++-+..+..+|.|++..++..|....+-+--++..
T Consensus 171 -------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 171 -------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp -------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred -------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 4677888888899999988988888776655444433
No 57
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=43.67 E-value=2.2e+02 Score=27.15 Aligned_cols=178 Identities=14% Similarity=0.128 Sum_probs=89.9
Q ss_pred chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHH--HHhHHH
Q 019512 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRE--CIRHQS 156 (340)
Q Consensus 79 dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRe--cik~e~ 156 (340)
.++...+..++.=+++-||-+..-+..+.... +.-.-.+. .|.+--.+|+ -+.-|.-||- ||+.+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~iLv~N----------sl~kDl~~~N-~~iR~lALRtL~~I~~~~ 135 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVIIVTS----------SLTKDMTGKE-DSYRGPAVRALCQITDST 135 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGGGGHH----------HHHHHHHSSC-HHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHHHHHH----------HHHhhcCCCc-HhHHHHHHHHHhcCCCHH
Confidence 35667778888888888886666555544431 11111111 1111111221 1334444443 333333
Q ss_pred HHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 019512 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (340)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~ 236 (340)
++..+... +-+-+..++=-|.+-|.-..-.++-..|++|.. |+.... .++.+.|+.+.-.++.+|.
T Consensus 136 m~~~l~~~-----lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~--------~~~~l~-~ll~d~n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 136 MLQAIERY-----MKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKR--------WVNEAQ-EAASSDNIMVQYHALGLLY 201 (355)
T ss_dssp THHHHHHH-----HHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHT--------THHHHH-HHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHH--------HHHHHH-HHhcCCCccHHHHHHHHHH
Confidence 33222111 111223445556666666666777777777743 455554 7888888888888888888
Q ss_pred HHhc-cccchH------------------HHHHh----hcC------hhhHHHHHHHhccCccccchhhhhhhhh
Q 019512 237 DILL-DRSNSV------------------VMTRY----VSS------RENLRILMNLLRESSKSIQIEAFHVFKL 282 (340)
Q Consensus 237 elLl-dr~N~~------------------vm~~Y----i~~------~~NLkliM~lL~d~sk~Iq~EAFhvFKv 282 (340)
++-- ||.... ...|| ... ..-+..+-..|++.+..|.|||..++=-
T Consensus 202 ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 202 HVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp HHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC
T ss_pred HHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 8864 431111 11122 111 1234456666778888888998765533
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.45 E-value=1.3e+02 Score=24.46 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=38.3
Q ss_pred hhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhh
Q 019512 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
.++.+++.-+|+.++..||.+ .+++-+..+..+|.|++..++..|-..+.-+
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~--------------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEI--------------GDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH--------------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 567777888888888888765 3466777777788888877887777666554
No 59
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=41.09 E-value=2.7e+02 Score=27.32 Aligned_cols=199 Identities=12% Similarity=0.109 Sum_probs=115.7
Q ss_pred chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhh-c--HhHHHHHHHhccCchhhhhHHHHHHHHHh-H
Q 019512 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYENTDMALHYGAMLRECIR-H 154 (340)
Q Consensus 79 dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~-~--peil~~L~~gY~~~dial~~G~mLRecik-~ 154 (340)
+.+..|+..|..=+-+.+.+++....++-.. .....-+.+.. . |-++..|.++- ++++--.+-..|+.+.. .
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC
Confidence 4566777777665566666666655554321 00011122222 1 34444444322 33333333344555554 2
Q ss_pred HHH-HHHHhcchhhHhhhhhccCCCh----hhhhhHHHHHHHHH---hhChHHHHHHHHhcHHHHHHHHHHhhccCCCcc
Q 019512 155 QSV-ARYVLESQHMKKFFDYIQLPNF----DIAADAAATFKELL---TRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (340)
Q Consensus 155 e~l-a~~iL~~~~f~~fF~yv~~~~F----diasDAf~tfkell---t~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (340)
+.. ..++.....+-.+.+.+..+.= +|..+|..+++-+= +.++.........+. +...- .||.+++.-
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~---i~~Lv-~LL~~~~~~ 394 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC---LQTLL-QHLKSHSLT 394 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---HHHHH-HHSSCSCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc---HHHHH-HHHcCCChH
Confidence 232 2233355555555555554332 46666666666543 356666656555553 44453 899999999
Q ss_pred hhhhhHHHHHHHhc-cccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhc-CCCC
Q 019512 227 TRRQAVKLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAA-NQNK 289 (340)
Q Consensus 227 tkRQSLKLL~elLl-dr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVA-NP~K 289 (340)
+++.+...|+.+-. ++.|. .+|-+..-+..+..||++++..++-+|--...=..+ ||.|
T Consensus 395 v~~~A~~aL~nLa~~~~~~~----~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHH----HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHcCCHHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 99999999999974 44443 455566778999999999999998888766654444 5554
No 60
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=40.86 E-value=2.3e+02 Score=27.09 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=56.8
Q ss_pred CCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc--hHHHHH
Q 019512 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLI 85 (340)
Q Consensus 8 ~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li 85 (340)
++.+|..+|+.+++.. . + +.+.+.|..++..|-..+ . .-.+++...+ .|..++
T Consensus 2 ~~~~P~~yv~~L~~~~---------~-~------~~~~~~L~~L~v~Lrt~~----~-----~Wv~~F~~~Gl~~Ll~~L 56 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL---------R-D------MHLLSCLESLRVSLNNNP----V-----SWVQTFGAEGLASLLDIL 56 (386)
T ss_dssp -CCCHHHHHHHHTSCC---------C-H------HHHHHHHHHHHHHHHHSC----H-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------c-h------HHHHHHHHHHhHHHhcCC----c-----HHHHHHHHhHHHHHHHHH
Confidence 5789999999987521 1 1 235777888888876432 1 2444444433 222333
Q ss_pred hhCCCC--------ChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchh
Q 019512 86 TCLPKL--------NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (340)
Q Consensus 86 ~~l~~L--------~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~di 140 (340)
..+..- +.+-.-.+...+..++..+ +..+++..||+.+..|..+-+.+..
T Consensus 57 ~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-----~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 57 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp HHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-----HHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHhCCH-----HHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 322111 1111112233333344333 4588999999999999988865544
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=40.78 E-value=3.4e+02 Score=28.44 Aligned_cols=103 Identities=10% Similarity=0.152 Sum_probs=62.7
Q ss_pred CCChhhhhcHHHHHHHHhhhhccCc-----cchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHHHHhcc
Q 019512 90 KLNLEARKDATQVVANLQRQQVHSK-----LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLES 164 (340)
Q Consensus 90 ~L~fE~rKdv~~If~~llr~~~~~~-----~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~ 164 (340)
..+-+.|--++.++.+.+++.-..+ .|.-+.-.=+..++..|... .+.+.-..|..+...++++--.+ +.
T Consensus 48 ~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~---Wp 122 (960)
T 1wa5_C 48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDR---WP 122 (960)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTT---CT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccc---hh
Confidence 3467788888888888887653311 12111111144566666653 36677777777777777653211 23
Q ss_pred hhhHhhhhhccCCChhhhhhHHHHHHHHHhhCh
Q 019512 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 197 (340)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk 197 (340)
+.+..+++.++.++...--.|+.++.+++.+.+
T Consensus 123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777778888888877543
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=38.92 E-value=1.5e+02 Score=28.44 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=90.3
Q ss_pred HhHHHHHHHhccCchhhhhHHHHHHHHHhHH-HHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHH
Q 019512 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEF 203 (340)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaef 203 (340)
|.++..|-++ ++++-..+-..|+....+. ..-..+.....+-.+.+.+..++=++.-.|-.+++.|...++..-...
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444444432 5666667777777755443 444477778888888999998998999999999999887656555555
Q ss_pred HHhcHHHHHHHHHHhhcc-CCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHh
Q 019512 204 LSKNYDWFFAEYNSKLLE-SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLL 265 (340)
Q Consensus 204 l~~nyd~Ff~~yn~~Ll~-s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL 265 (340)
....- .... -.||. +++.-+++++.-.|+.|-.+..|...+. + .-+..++.+|
T Consensus 83 ~~~G~---i~~L-v~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~----~-g~i~~Lv~ll 136 (457)
T 1xm9_A 83 RRQNG---IREA-VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI----A-DALPVLADRV 136 (457)
T ss_dssp HHTTC---HHHH-HHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH----H-HHHHHHHHHT
T ss_pred HHcCC---HHHH-HHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH----h-ccHHHHHHHH
Confidence 44432 2233 26787 8888999999999999998876655332 3 5566777777
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=37.45 E-value=1e+02 Score=29.62 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=79.5
Q ss_pred hhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcc-ccchHH
Q 019512 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLD-RSNSVV 247 (340)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLld-r~N~~v 247 (340)
.+..++..++-++-..|..+++.+...++..-....... .+...- .||.|++--.++.+...|+.|..+ ..|...
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g---~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG---GICKLV-DLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTT---HHHHHH-HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcC---CHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344556667778889999999997755544443444443 244453 799999999999999999999975 444333
Q ss_pred HHHhhcChhhHHHHHHHhc-cCccccchhhhhhhhhhhcC
Q 019512 248 MTRYVSSRENLRILMNLLR-ESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 248 m~~Yi~~~~NLkliM~lL~-d~sk~Iq~EAFhvFKvFVAN 286 (340)
|.+..-+..++.+|+ +.+..+|.+|-...--...+
T Consensus 82 ----i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 82 ----TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp ----HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred ----HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 334577888999998 77888999988777655555
No 64
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=37.26 E-value=2.2e+02 Score=25.10 Aligned_cols=134 Identities=11% Similarity=0.121 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc--hHHHHHhhC
Q 019512 11 TPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLITCL 88 (340)
Q Consensus 11 tP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li~~l 88 (340)
+|..+|+.+++.+ . + +.+.+.|..++..|-..+ . .-.+++...+ .|..++..+
T Consensus 1 ~P~~yi~~L~~~~---------~-~------~~~~~~L~~L~v~Lrt~~----~-----~Wv~~F~~~Gl~~L~~~L~~~ 55 (233)
T 2f31_A 1 SAMMYIQELRSGL---------R-D------MHLLSCLESLRVSLNNNP----V-----SWVQTFGAEGLASLLDILKRL 55 (233)
T ss_dssp CHHHHHHHHTTTC---------C-H------HHHHHHHHHHHHHHHHSC----H-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc---------c-h------HHHHHHHHHHhHhHhcCC----c-----HHHHHHHHhHHHHHHHHHHHH
Confidence 6899998887531 1 1 135677777777776332 1 2444443333 233333332
Q ss_pred CCC--------ChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHHH
Q 019512 89 PKL--------NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARY 160 (340)
Q Consensus 89 ~~L--------~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~ 160 (340)
..- +.+-.-.+...+..++..+ +..+++.+||+.+..|..+-+.+.... |-.+ -|-|+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-----~G~~~vl~~~~~i~~l~~~L~s~~~~~------r~~~-leLL~~l 123 (233)
T 2f31_A 56 HDEKEETSGNYDSRNQHEIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVPNM------MIDA-AKLLSAL 123 (233)
T ss_dssp HTCC-----CCHHHHHHHHHHHHHHHTSSH-----HHHHHHHTSSSHHHHHHTTCCTTSHHH------HHHH-HHHHHHH
T ss_pred HhcccccchhhhHHHHHHHHHHHHHHhCCh-----HHHHHHHcCcHHHHHHHHHhCCCCchH------HHHH-HHHHHHH
Confidence 211 1111122333344444433 458899999999999998887655521 2111 3444444
Q ss_pred HhcchhhHhhhhhccCCC-hhhhhhHHHHHHH
Q 019512 161 VLESQHMKKFFDYIQLPN-FDIAADAAATFKE 191 (340)
Q Consensus 161 iL~~~~f~~fF~yv~~~~-FdiasDAf~tfke 191 (340)
.++++ ..+ ++..-+|+.+++.
T Consensus 124 c~~~~----------~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 124 CILPQ----------PEDMNERVLEAMTERAE 145 (233)
T ss_dssp HTCSS----------SSCHHHHHHHHHHHHHH
T ss_pred HhCCC----------CCChHHHHHHHHHHHHH
Confidence 44332 125 7777788887765
No 65
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=36.14 E-value=27 Score=31.32 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc------------hHHHHHhhCCCCChhhhhcHHHHHHHH
Q 019512 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN------------TLRLLITCLPKLNLEARKDATQVVANL 106 (340)
Q Consensus 39 ~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d------------ll~~Li~~l~~L~fE~rKdv~~If~~l 106 (340)
+..-+|+.+|.+|-+-+.+.. .|..+..||..+-+.+ .+..|++..| -|+| +-.+..+++-+
T Consensus 81 e~ir~IA~qLa~igD~le~sI----~p~~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dme-kEk~~L~lamL 154 (195)
T 1ddb_A 81 EIIHNIARHLAQIGDEMDHNI----QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDME-NDKAMLIMTML 154 (195)
T ss_dssp CSHHHHHHHHHHHHHHHGGGC----CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHH-HHHHHHHHHHH
Confidence 335689999999999999743 3466777877775332 4678888988 7888 66678899999
Q ss_pred hhhhccCccch
Q 019512 107 QRQQVHSKLIA 117 (340)
Q Consensus 107 lr~~~~~~~p~ 117 (340)
|..++-+..|.
T Consensus 155 LaKKVa~htPs 165 (195)
T 1ddb_A 155 LAKKVASHAPS 165 (195)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhChH
Confidence 99888777663
No 66
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.15 E-value=90 Score=26.30 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHhh------chHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHH--H
Q 019512 62 EPVSEACAQLTAEFFRE------NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI--A 133 (340)
Q Consensus 62 ep~~e~~~qLa~ei~~~------dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~--~ 133 (340)
.|..-...++|+..+++ .++..|..-|..=.-..+-.+-+|...|++ .+....++.+..|..+|..|. +
T Consensus 26 ~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F~ 102 (140)
T 1vdy_A 26 VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHYK 102 (140)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTCC
T ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhcC
Confidence 34445678888888774 356777777777666666666667777776 233456888888888888774 3
Q ss_pred hccCchhhhhHHHHHHHHHh
Q 019512 134 GYENTDMALHYGAMLRECIR 153 (340)
Q Consensus 134 gY~~~dial~~G~mLRecik 153 (340)
|..+|--.---|...|+-.+
T Consensus 103 g~~dp~~G~d~g~~VR~~Ak 122 (140)
T 1vdy_A 103 GHPDPLKGDALNKAVRETAH 122 (140)
T ss_dssp CCCCTTTSSCHHHHHHHHHH
T ss_pred CCCCcccccchhHHHHHHHH
Confidence 44444355567777887553
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=30.41 E-value=1.4e+02 Score=31.99 Aligned_cols=162 Identities=14% Similarity=0.259 Sum_probs=105.2
Q ss_pred HHHHHHHhcchhhHh-hhhhccCCChhhhhhHHHHHHHHHhhChHHH-HHHHHh----cHHHHHHHHHHhhccCCCcchh
Q 019512 155 QSVARYVLESQHMKK-FFDYIQLPNFDIAADAAATFKELLTRHKSTV-AEFLSK----NYDWFFAEYNSKLLESSNYITR 228 (340)
Q Consensus 155 e~la~~iL~~~~f~~-fF~yv~~~~FdiasDAf~tfkellt~hk~lv-aefl~~----nyd~Ff~~yn~~Ll~s~NYVtk 228 (340)
|.+.+.|+..+..|. +.+++..++=.|...|..++--|.. ++... ++|+.. +..+ +.-.- .|+.+++.-||
T Consensus 595 E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~r-L~lLV-~Ll~s~D~~~r 671 (778)
T 3opb_A 595 EEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRN-FNILV-KLLQLSDVESQ 671 (778)
T ss_dssp HHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHH-HHHHH-HGGGCSCHHHH
T ss_pred hHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhcc-HHHHH-HHHcCCCHHHH
Confidence 345555666533554 4457777777888888888887775 66554 577642 2222 22332 78999999999
Q ss_pred hhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhcc--Cccccchhhhhhhh-hh-hcCCCCChhHHHHHHHhHHHH
Q 019512 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRE--SSKSIQIEAFHVFK-LF-AANQNKPPDIVSILVANRSKL 304 (340)
Q Consensus 229 RQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d--~sk~Iq~EAFhvFK-vF-VANP~K~~~I~~IL~~Nr~kL 304 (340)
|-+.-.|+-+- -.+-.+....+..++-+..+..+|++ ....+|--|-.++. ++ +|--+.+......+.+|+...
T Consensus 672 ~AAagALAnLt--s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~ 749 (778)
T 3opb_A 672 RAVAAIFANIA--TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749 (778)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHH
T ss_pred HHHHHHHHHhc--CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHH
Confidence 99998887763 12334445566667899999999999 77778777766554 55 564466666677777786544
Q ss_pred HHHHhcCCCCCcccchH
Q 019512 305 LRLFADFKTDKEDEQFE 321 (340)
Q Consensus 305 i~fl~~f~~d~~D~qF~ 321 (340)
-....-...+..|++|.
T Consensus 750 ~~l~~~lk~~~~~~e~~ 766 (778)
T 3opb_A 750 DALNMSLKRGDSGPEFS 766 (778)
T ss_dssp HHHHHHHSSSSSCSSTT
T ss_pred HHHHHHHhCCCchHHHH
Confidence 44333333434665554
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=30.14 E-value=4.4e+02 Score=26.51 Aligned_cols=218 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhH
Q 019512 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDL 127 (340)
Q Consensus 48 L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~pei 127 (340)
+..++.++.-+ |.++...+.+.. |..-+..=+-+.|--+....+.+.... |..+++..|...
T Consensus 311 ~ea~~~i~~l~----~~~~~~~~~~~~---------L~~~L~~~~~niry~aL~~l~~l~~~~-----~~~~~~~~~~~~ 372 (621)
T 2vgl_A 311 FEAISLIIHHD----SEPNLLVRACNQ---------LGQFLQHRETNLRYLALESMCTLASSE-----FSHEAVKTHIET 372 (621)
T ss_dssp HHHHHHHHHHC----CCHHHHHHHHHH---------HHHHSSCSCHHHHHHHHHHHHHHTTCT-----TTHHHHHTTHHH
T ss_pred HHHHHHHHhcC----CcHHHHHHHHHH---------HHHHhcCCCcchHHHHHHHHHHHHhcc-----CcHHHHHHHHHH
Q ss_pred HHHHHHhccCchhhhhHHHHHHHHHhHHHHHHHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhc
Q 019512 128 LDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKN 207 (340)
Q Consensus 128 l~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~n 207 (340)
+...++..+++.|....=.+|...+....+.. .+..+.+|++..+.++..++......+-.+++ .+
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~--------~~ 438 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMCDRSNAQQ------IVAEMLSYLETADYSIREEIVLKVAILAEKYA--------VD 438 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--------SS
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHcChhhHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--------Cc
Q ss_pred HHHHHHHHHHhhccCCCcch-----------------hhhhHHHHHHHhccccchHHHH-----------HhhcC-----
Q 019512 208 YDWFFAEYNSKLLESSNYIT-----------------RRQAVKLLGDILLDRSNSVVMT-----------RYVSS----- 254 (340)
Q Consensus 208 yd~Ff~~yn~~Ll~s~NYVt-----------------kRQSLKLL~elLldr~N~~vm~-----------~Yi~~----- 254 (340)
++|+.+-...-|-..++||. +..+++-|.+.|.++.-...+. ..+.+
T Consensus 439 ~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 439 YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCC
Q ss_pred -hhhHHHHHHHhccCccccchhhhh-hhhhhhcCCCCChhHHHHH
Q 019512 255 -RENLRILMNLLRESSKSIQIEAFH-VFKLFAANQNKPPDIVSIL 297 (340)
Q Consensus 255 -~~NLkliM~lL~d~sk~Iq~EAFh-vFKvFVANP~K~~~I~~IL 297 (340)
.+-|+.+.+-+.+.+..+|..+-. +.|+|+..|.-.+.|..+|
T Consensus 519 p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l 563 (621)
T 2vgl_A 519 PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVL 563 (621)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHH
No 69
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=28.86 E-value=2.3e+02 Score=25.50 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhccCCc-hh-hhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhh-chHHHHHhhCC
Q 019512 13 VDIVRQTRDLIIYANRSADV-RE-SKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE-NTLRLLITCLP 89 (340)
Q Consensus 13 ~elVr~l~e~l~~L~~~~~~-~~-~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~-dll~~Li~~l~ 89 (340)
.|.|....|-|.+||.-.+. .+ .+-.+ .=+++|.|..-=+.++|++. -.+|.|..|+.++++- .--..++..+.
T Consensus 75 re~v~d~l~YLkkLD~l~~~Lq~h~~Lse-~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~L~~~~~~ll~~l~ 151 (204)
T 2jqq_A 75 QEIIKDVLEYLKKLDEIYGSLRNHSQLTE-ALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYKLITASRRILESCA 151 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSSHHHH-HHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888762110 00 11111 23588888888888999865 5568898888888753 12334444444
Q ss_pred CC
Q 019512 90 KL 91 (340)
Q Consensus 90 ~L 91 (340)
.+
T Consensus 152 dl 153 (204)
T 2jqq_A 152 DS 153 (204)
T ss_dssp SC
T ss_pred hc
Confidence 44
No 70
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=28.66 E-value=3.7e+02 Score=25.16 Aligned_cols=197 Identities=11% Similarity=0.103 Sum_probs=119.8
Q ss_pred hchHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhh---cHhHHHHHHHhccCchhhhhHHHHHHHHHh-
Q 019512 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA---NIDLLDILIAGYENTDMALHYGAMLRECIR- 153 (340)
Q Consensus 78 ~dll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~---~peil~~L~~gY~~~dial~~G~mLRecik- 153 (340)
.+.+..|+..|..=+-+.+.+++....+|-... ....-+.+.. =|-++..|.++. ++++--.+-..|+.+..
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~---~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRA---DVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC---CHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC---CHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcc
Confidence 356788888887666777887777666664320 0011222322 155555555433 34444344455666555
Q ss_pred HHHHHHHH-hcchhhHhhhhhccCCCh----hhhhhHHHHHHHHH---hhChHHHHHHHHhcHHHHHHHHHHhhccCCCc
Q 019512 154 HQSVARYV-LESQHMKKFFDYIQLPNF----DIAADAAATFKELL---TRHKSTVAEFLSKNYDWFFAEYNSKLLESSNY 225 (340)
Q Consensus 154 ~e~la~~i-L~~~~f~~fF~yv~~~~F----diasDAf~tfkell---t~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NY 225 (340)
.+.....+ .....+-.+.+.+..++- +|..+|-.+++-+= +.+..........+. +...- .||.+++.
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~---i~~Lv-~lL~~~~~ 277 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC---LQTLL-QHLKSHSL 277 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH---HHHHH-HHTTCSCH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC---HHHHH-HHHcCCCh
Confidence 32332333 356666666666654432 46566666665543 356655555554442 44453 78999999
Q ss_pred chhhhhHHHHHHHhc-cccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcC
Q 019512 226 ITRRQAVKLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAAN 286 (340)
Q Consensus 226 VtkRQSLKLL~elLl-dr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVAN 286 (340)
-+++.+...|+.+-. ++.+. .+|-+..-+..+..||++++..++-+|--...-..++
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~----~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHH----HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999974 44443 3445566788899999999999998887666655553
No 71
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=27.16 E-value=12 Score=27.83 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCC--cccchHHHHHHHHHHHhcC
Q 019512 301 RSKLLRLFADFKTDK--EDEQFEADKAQVVKEIAGL 334 (340)
Q Consensus 301 r~kLi~fl~~f~~d~--~D~qF~dEK~~li~~I~~L 334 (340)
.+||-.||++|..+- .=.++..+.+.++++|+++
T Consensus 4 ~~KLasFLkDFD~ev~~~~~~~~~~~~~llk~i~~~ 39 (62)
T 2qfa_B 4 RRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNL 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999997633 3456888999999988764
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.95 E-value=2.6e+02 Score=22.83 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=60.4
Q ss_pred hhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHH
Q 019512 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (340)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm 248 (340)
.+...++.++-+|-.-|..++..+=. + ......- .++.+++.-+|+.++..||.+
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~--~------------~~~~~L~-~~l~d~~~~vr~~a~~aL~~~---------- 139 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGD--E------------RAVEPLI-KALKDEDWFVRIAAAFALGEI---------- 139 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC--G------------GGHHHHH-HHTTCSSHHHHHHHHHHHHHH----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--H------------HHHHHHH-HHHhCCCHHHHHHHHHHHHHc----------
Confidence 33344455566666666665554411 1 1223342 688899999999999999986
Q ss_pred HHhhcChhhHHHHHHHhccCccccchhhhhhhhhh
Q 019512 249 TRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLF 283 (340)
Q Consensus 249 ~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvF 283 (340)
.+++-+..+..+|.|++..++..|...+.-+
T Consensus 140 ----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 140 ----GDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp ----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3567788889999999999999998877765
No 73
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=25.32 E-value=4.4e+02 Score=24.99 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=68.8
Q ss_pred HhHHHHHHHh---------ccCchhhhhHHHHHHHHHhHHHHHHHHhcchhhHhhhhh----ccCCChhhhhhHHHHHHH
Q 019512 125 IDLLDILIAG---------YENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDY----IQLPNFDIAADAAATFKE 191 (340)
Q Consensus 125 peil~~L~~g---------Y~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y----v~~~~FdiasDAf~tfke 191 (340)
|.|++.+..+ .+.||.-...=.+||.|..|-.-+=.-|..+.|..+.+- ++-+.-+||--+..++.+
T Consensus 114 p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 6666666433 478999999999999999884433333666677777775 368999999999999999
Q ss_pred HHhh---ChHHHHHHHHhcHHHHHHHHH
Q 019512 192 LLTR---HKSTVAEFLSKNYDWFFAEYN 216 (340)
Q Consensus 192 llt~---hk~lvaefl~~nyd~Ff~~yn 216 (340)
++.+ +...+.+|..+.|-....+.-
T Consensus 194 ll~n~~~~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 194 LLQNVAQEEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 9984 455677888877777666654
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.87 E-value=4.9e+02 Score=24.99 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhhCCCCChhhh
Q 019512 17 RQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEAR 96 (340)
Q Consensus 17 r~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~r 96 (340)
+.+++.+.+|.++++ +|.-+.|..+|.++..|. .+|+|+.+.|=+..|+.....-+-+..
T Consensus 118 ~ra~~iiekL~~~~~----------~~lr~aLfsLk~~~q~D~----------~Fa~EFI~~~GL~~Li~vi~~~~gN~q 177 (339)
T 3dad_A 118 VRVNAILEKLYSSSG----------PELRRSLFSLKQIFQEDK----------DLVPEFVHSEGLSCLIRVGAAADHNYQ 177 (339)
T ss_dssp HHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHTCT----------THHHHHHHTTHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhcCCc----------HHHHHHHHHHHHHhhcch----------HHHHHHHHhccHHHHHHHHHhcChHHH
Confidence 344455555554432 477888999999888443 399999999888888888887777766
Q ss_pred hcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhcc--CchhhhhHHHHHHHHHhHH-HHHHHHhcchh-------
Q 019512 97 KDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQ-SVARYVLESQH------- 166 (340)
Q Consensus 97 Kdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e-~la~~iL~~~~------- 166 (340)
.-+-.-|..++-+-.| .+=+..||+.+..+..--. .+.+.-.+-.+|--++-+- ..+..+...-.
T Consensus 178 ~Y~L~AL~~LM~~v~G-----m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~ 252 (339)
T 3dad_A 178 SYILRALGQLMLFVDG-----MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTG 252 (339)
T ss_dssp HHHHHHHHHHTTSHHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccc-----ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccC
Confidence 6555556655543211 1123447888887765433 2333333555555444332 22222211111
Q ss_pred ---hHhhhhhcc---CCChhhhhhHHHHHHHHHh
Q 019512 167 ---MKKFFDYIQ---LPNFDIAADAAATFKELLT 194 (340)
Q Consensus 167 ---f~~fF~yv~---~~~FdiasDAf~tfkellt 194 (340)
+..+...++ .++=++..-|++-+..+|.
T Consensus 253 ~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 253 APPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp CCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 334444444 4555555555555555554
No 75
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.73 E-value=76 Score=27.52 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhccCCCcchhhhhHHHHHHHhccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHH
Q 019512 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSIL 297 (340)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL 297 (340)
.+|.++|.-+|++++..||.+= +++-+..++.+|.|++..++..|-..+--+-..+..-+++..+|
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~--------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRG--------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL 95 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHccC--------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHH
No 76
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.41 E-value=2.3e+02 Score=30.22 Aligned_cols=162 Identities=14% Similarity=0.210 Sum_probs=89.8
Q ss_pred hhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhc--cCchhhhhHHHHHHHHHhHHH-------HHHHHh-
Q 019512 93 LEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQS-------VARYVL- 162 (340)
Q Consensus 93 fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~-------la~~iL- 162 (340)
|+..+++..+.+.+.++=.-+.-+.+.|+.. ++..|+..| +.|++.+.+-.+-.+|-..|. +++++=
T Consensus 124 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~ 200 (778)
T 3opb_A 124 FSNKDATIALLNELQIRIHYGEDTHVTYLLS---IILQLLNKFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSS 200 (778)
T ss_dssp CCSGGGGHHHHHHHHHHHHHTCSSCHHHHHH---HHHHHHHHSCCCSTTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcchhHHHH---HHHHHHHHcCccccchhhHHHHhccccChhhhHHHHHHHHHHHHHh
Confidence 5556677778887755433233347888754 566666654 567766655544443332222 111110
Q ss_pred cchhh-HhhhhhccCCC--------hhhhhhHHHHHHHHHhhChHHHHHHHH-hcHHHHHHHHHHhhc-cCCCcchhhhh
Q 019512 163 ESQHM-KKFFDYIQLPN--------FDIAADAAATFKELLTRHKSTVAEFLS-KNYDWFFAEYNSKLL-ESSNYITRRQA 231 (340)
Q Consensus 163 ~~~~f-~~fF~yv~~~~--------FdiasDAf~tfkellt~hk~lvaefl~-~nyd~Ff~~yn~~Ll-~s~NYVtkRQS 231 (340)
+.+.| ..|-+|++.-. =+=-..+|+++..++...+.++|+-+. ..+. ...- ..+ +.......+..
T Consensus 201 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~---~~l~-~~~~~~~~~~~~~a~ 276 (778)
T 3opb_A 201 FQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLS---KLFK-KRVFEEQDLQFTKEL 276 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHH---HHHH-HHHHSSCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHH---HHHH-HHHhcccchHHHHHH
Confidence 11122 23333443111 122235789999999999999996554 4543 3332 333 34556666788
Q ss_pred HHHHHHHhccccchHHHHHhhcChhhHHHHHHHhc
Q 019512 232 VKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLR 266 (340)
Q Consensus 232 LKLL~elLldr~N~~vm~~Yi~~~~NLkliM~lL~ 266 (340)
|+||+..-.|+.+.. || ....+..+-.+++
T Consensus 277 L~lLsaACi~~~cR~----~I-~~~~~~~L~~~l~ 306 (778)
T 3opb_A 277 LRLLSSACIDETMRT----YI-TENYLQLLERSLN 306 (778)
T ss_dssp HHHHHHHCCSHHHHH----HH-HHHHHHHHHHHTT
T ss_pred HHHHHHHhCCcHHHH----HH-HHhHHHHHHHHhc
Confidence 999999988887744 33 2334444444443
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.38 E-value=2.9e+02 Score=22.26 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=57.0
Q ss_pred hHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchH
Q 019512 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (340)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~ 246 (340)
+..+...+..++-+|-.-|...+..+= .+. ....+- .++.+++.-+|+.++.-||.+
T Consensus 109 ~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~------------~~~~L~-~~l~d~~~~vr~~A~~aL~~~-------- 165 (201)
T 3ltj_A 109 VEPLIKALKDEDWFVRIAAAFALGEIG--DER------------AVEPLI-KALKDEDGWVRQSAADALGEI-------- 165 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHT--CGG------------GHHHHH-HHTTCSSHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC--CHH------------HHHHHH-HHHcCCCHHHHHHHHHHHHHh--------
Confidence 334444555666666666666655541 121 223342 678888999999999999987
Q ss_pred HHHHhhcChhhHHHHHHHhccCccccchhhhhhh
Q 019512 247 VMTRYVSSRENLRILMNLLRESSKSIQIEAFHVF 280 (340)
Q Consensus 247 vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvF 280 (340)
.+++-+..+..+|.|++..++..|-...
T Consensus 166 ------~~~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 166 ------GGERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp ------CSHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ------CchhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5677888888888888888877765443
No 78
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.36 E-value=2.7e+02 Score=22.58 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHH
Q 019512 40 KMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLR 82 (340)
Q Consensus 40 k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~ 82 (340)
+++|++|.|..+-.-|-..+=.++.-+...+|++++-+.|+-.
T Consensus 37 ~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~ 79 (118)
T 2yru_A 37 VCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDA 79 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3689999999998887755545555677889999988877643
No 79
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=21.84 E-value=2.1e+02 Score=25.52 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchH------------HHHHhhCCCCChhhhhcHHHHHHHH
Q 019512 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTL------------RLLITCLPKLNLEARKDATQVVANL 106 (340)
Q Consensus 39 ~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll------------~~Li~~l~~L~fE~rKdv~~If~~l 106 (340)
+....|+++|.+|-.-+.+. ..|..+..||..+.+.++- ..|++..| .|.| +-...-+.+-|
T Consensus 83 eiir~IA~qLAqiGD~md~s----I~P~lV~~La~qf~N~~lsEEdrr~~LAaaleql~Qt~P-~Dme-qEKtmLvlamL 156 (197)
T 2bid_A 83 DIIRNIARHLAQVGDSMDRS----IPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYP-RDME-KEKTMLVLALL 156 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTSC-CSSC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHCC-CcHh-HHHHHHHHHHH
Confidence 33467999999999999974 3456788888887766554 33444333 2444 33456678888
Q ss_pred hhhhccCccc---------hhHHhhhc
Q 019512 107 QRQQVHSKLI---------ASDYLEAN 124 (340)
Q Consensus 107 lr~~~~~~~p---------~v~Yl~~~ 124 (340)
|..++-+-.| ||.|+..|
T Consensus 157 LAKKVa~htPSLLrdVF~TTVnfInqN 183 (197)
T 2bid_A 157 LAKKVASHTPSLLRDVFHTTVNFINQN 183 (197)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 8877765555 36666554
No 80
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=20.06 E-value=1.1e+02 Score=24.99 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHH--------HHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc
Q 019512 8 KPRTPVDIVRQTR--------DLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (340)
Q Consensus 8 ~~KtP~elVr~l~--------e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d 79 (340)
++-|-.|+.+.+. ..+..++.+.. ... ..+.+..|+++++.=-..+.|+...++.. .-.++..+ .+..
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E~G~r-~~P-s~~~l~~iA~~f~V~~~yl~~~~~~~~~~-~el~ll~~-~rd~ 100 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLRSGNR-TNP-SGATMAALANFFRIKAAYFTDDEYYEKLD-KELQWLCT-MRDD 100 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSS-CCC-CHHHHHHHHHHHTSCTHHHHCHHHHHHHH-HHHHHHHH-TTST
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHCCCC-CCC-CHHHHHHHHHHhCCCHHHHcCCcchhhHH-HHHHHHHH-Hhhh
Confidence 4567777777764 55666665321 011 11335677777776666677643211111 11122222 2223
Q ss_pred hHHHHHhhCCCCChhhhhcHHHHHHHHhh
Q 019512 80 TLRLLITCLPKLNLEARKDATQVVANLQR 108 (340)
Q Consensus 80 ll~~Li~~l~~L~fE~rKdv~~If~~llr 108 (340)
-+..+......|+=|+++.+..+...+.+
T Consensus 101 ~v~~l~~r~~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 101 GVRRIAQRAHGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp THHHHHHHHTSCCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33445555567888888888887777644
Done!