BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019513
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 154/252 (61%), Gaps = 10/252 (3%)
Query: 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
LS + RY+R ++L F +GQ L S +L++G GGLG A YLA+ GVG L ++D
Sbjct: 4 LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63
Query: 126 DVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYE 185
D V L+N+ RQ +H++ +GQ KV+SA IN + I L + ++++++
Sbjct: 64 DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123
Query: 186 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRC---LFPTP 241
+V+D TDN R ++ C PLVSGAA+ +EGQ+TV+ Y +G PCYRC LF
Sbjct: 124 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN 183
Query: 242 PPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301
T C ++GV+ + G+IG LQA+EAIK+ + G+P SG+++++DA++ + R +K+
Sbjct: 184 ALT-----CVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL 238
Query: 302 RGRSSQCEACGE 313
R+ CE CG+
Sbjct: 239 M-RNPGCEVCGQ 249
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
RYSR +LL ++GQ LL S +L+IG GGLG+PA LYLA GVG L + D D V L
Sbjct: 6 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 65
Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
+N+ RQ++ T I + K + + +N + + ++ L + +++ ++V+D
Sbjct: 66 SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 125
Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 248
TDN +R I+ CV L PL++ +A+G GQL V + G CYRCL+P +
Sbjct: 126 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 182
Query: 249 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308
C +GV+G V G++G LQALEAIK+ S + P +G + LFD S++ R + +R R+S C
Sbjct: 183 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 240
Query: 309 EACG 312
CG
Sbjct: 241 PVCG 244
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 7/244 (2%)
Query: 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
RYSR +LL ++GQ LL S +L+IG GGLG+PA LYLA GVG L + D D V L
Sbjct: 8 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 67
Query: 131 NNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDA 190
+N+ RQ++ T I + K + + +N + + ++ L + +++ ++V+D
Sbjct: 68 SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 127
Query: 191 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 248
TDN +R I+ CV L PL++ +A+G GQL V + G CYRCL+P +
Sbjct: 128 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 184
Query: 249 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308
C +GV+G V G++G LQALEAIK+ S + P +G + LFD S++ R + +R R+S C
Sbjct: 185 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 242
Query: 309 EACG 312
CG
Sbjct: 243 PVCG 246
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
+LV+GAGG+G L L G + ++D D ++++N++RQ + + ++G+SK + A +
Sbjct: 20 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 79
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 80 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 139
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
G GQ+T CY C P PT
Sbjct: 140 GTAGYLGQVTTIKKGVTECYEC---HPKPT 166
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
+LV+GAGG+G L L G + ++D D ++++N++RQ + + ++G+SK + A +
Sbjct: 22 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 81
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 82 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 141
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
G GQ+T CY C P PT
Sbjct: 142 GTAGYLGQVTTIKKGVTECYEC---HPKPT 168
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAAT 155
+LV+GAGG+G L L G + ++D D ++++N++RQ + + ++G+SK + A +
Sbjct: 40 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 99
Query: 156 CRSINSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 100 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 159
Query: 215 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 244
G GQ+T CY C P PT
Sbjct: 160 GTAGYLGQVTTIKKGVTECYEC---HPKPT 186
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 73 RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
RYSR+ L S+G V Q L + ++++G GG+G+ + LA G+G + ++D+D +
Sbjct: 91 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 150
Query: 129 ELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVV 188
E N+ RQV+ +E +G++K + NS + + E + L + + +I V
Sbjct: 151 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 210
Query: 189 DATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
+ D+ + ++ CV +P ++ G + V+ GP Y P T C
Sbjct: 211 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 257
Query: 248 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 282
C AD V + L A + IK EPL
Sbjct: 258 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 317
Query: 283 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 312
S L+ RI I +KI GRS C CG
Sbjct: 318 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 347
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 73 RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
RYSR+ L S+G V Q L + ++++G GG+G+ + LA G+G + ++D+D +
Sbjct: 94 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 153
Query: 129 ELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVV 188
E N+ RQV+ +E +G++K + NS + + E + L + + +I V
Sbjct: 154 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213
Query: 189 DATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 247
+ D+ + ++ CV +P ++ G + V+ GP Y P T C
Sbjct: 214 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 260
Query: 248 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 282
C AD V + L A + IK EPL
Sbjct: 261 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 320
Query: 283 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 312
S L+ RI I +KI GRS C CG
Sbjct: 321 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 350
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 40 DTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVI 99
D+ S P + T+S + +P RY + + FG E Q + S ++
Sbjct: 376 DSLESLPSSVTISEETCKPRGC-----------RYDGQIAV--FGSEFQEKIASLSTFLV 422
Query: 100 GAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
GAG +G L A GV G + + D D +E +N++RQ + +G+ K + A+
Sbjct: 423 GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECAST 482
Query: 155 TCRSINSTV--HIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLG 208
+N ++ I ++E + + E + +V +A DN +R + CV
Sbjct: 483 AVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFE 542
Query: 209 KPLVSGAALGLEGQLTV 225
KPL+ LG +G V
Sbjct: 543 KPLLESGTLGTKGNTQV 559
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 59 SSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVG 118
S+ +D GL YSR L + G E + +S++L+IG GLG + GV
Sbjct: 1 SNTIDEGL-------YSRQLYV--LGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVK 51
Query: 119 RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165
+ + D + ++ Q TE IG + K + +N V +
Sbjct: 52 SVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPV 98
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLG-----SPALLYLAACGVGRLGIVDHDV 127
RY + + FG++ Q + S + ++G+G +G + ALL L + G + + D+D
Sbjct: 407 RYDNQIAV--FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDS 464
Query: 128 VELNNMHRQVIHTEPYIGQSKVKSAA-ATCR-------SINSTVHII--EHREALRTSNA 177
+E +N++RQ + +G++K + AA A C IN+ + + E E S
Sbjct: 465 IEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDS-- 522
Query: 178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225
+ V +A DN +R + CV KPL+ LG +G V
Sbjct: 523 --FWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQV 568
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
YSR L + G E + S++L++G GLG + GV + + D + V+L ++
Sbjct: 10 YSRQLYV--LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADL 67
Query: 134 HRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 193
Q TE IGQ + A +N+ V + L + + + LSQ+++VV ATD
Sbjct: 68 STQFFLTEKDIGQKRGDVTRAKLAELNAYVPV----NVLDSLDDVTQLSQFQVVV-ATDT 122
Query: 194 A--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 240
+ I++ C G +S GL G V + G + L PT
Sbjct: 123 VSLEDKVKINEFCHSSGIRFISSETRGLFGNTFV---DLGDEFTVLDPT 168
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 131 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 189
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
PL+ G G +G V C C PP C
Sbjct: 190 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 237
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 52 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 111
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 112 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 170
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
PL+ G G +G V C C PP C
Sbjct: 171 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 218
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
PL+ G G +G V C C PP C
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 208
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 473 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 531
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250
PL+ G G +G V C C PP C
Sbjct: 532 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 99 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 157
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
PL+ G G +G V C C PP
Sbjct: 158 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAA 154
+LVIGAGGLG L LA G ++ ++D D ++++N++RQ + IG+ K + AA
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 155 TCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 209
+++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 210 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 243
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 112 LAACGVGRLGIVDHDVVELNNMHRQVIHTEPY-IGQSKVKSAAATCRSIN---------- 160
L CG+G+L + D+D VEL NM+R + +P+ G SKV++A T R+IN
Sbjct: 55 LTRCGIGKLLLFDYDKVELANMNR--LFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112
Query: 161 --STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV-SGAAL 217
+TV +H ++ LE ++V+ DN +R I+ C LG+ + SG +
Sbjct: 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE 172
Query: 218 -GLEGQLTVYNYNGGPCYRCLFPTPPPTTACQ----------RCADS--GVLGVVPGII 263
+ G + + C+ C PP A CA S +GVV GI+
Sbjct: 173 NAVSGHIQLIIPGESACFAC---APPLVVAANIDEKTLKREGVCAASLPTTMGVVAGIL 228
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 360 TVSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 419
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 420 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 478
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
CY C P + R D PG+ +L + S + SG
Sbjct: 479 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 538
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 360 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 419
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 420 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 478
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
CY C P + R D PG+ +L + S + SG
Sbjct: 479 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 538
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 15 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 71
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 72 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 131
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 132 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 190
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
CY C P + R D PG+
Sbjct: 191 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGV 228
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 11 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 68 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 127
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 128 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 186
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
CY C P + R D PG+
Sbjct: 187 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGV 224
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 361 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 420
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 421 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 479
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
CY C P + R D PG+ +L + S + SG
Sbjct: 480 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 539
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 26/240 (10%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI---------NSTVHIIEHREALRTSNA 177
V +N RQ ++ G+ K + AAA+ + I ++ +I H+ +
Sbjct: 361 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 420
Query: 178 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 421 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 479
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 284
CY C P + R D PG+ +L + S + SG
Sbjct: 480 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 539
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 26/218 (11%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 11 SVDLNLKLXKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNNMHRQVIHTEPYIGQSKVKSAAATCR-------------SINSTVHIIEHREALR 173
V +N RQ ++ G+ K + AAA+ + SI H + + EA
Sbjct: 68 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQH 127
Query: 174 T--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 231
++ +++I+ D+ SR++ S + K +++ AALG + L + N
Sbjct: 128 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVXRHGNRD 186
Query: 232 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGI 262
CY C P + R D PG+
Sbjct: 187 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQXSTVTRPGV 224
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124
G+S + +Y R + L +G+E Q L S +L++G GLG+ L GV L ++D
Sbjct: 10 GISEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 125 HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165
H+ V + Q + +G+++ +++ +++N V +
Sbjct: 68 HEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDV 108
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
+Y R L L +G GQ L + + +I A G+ L L G+G I+D + V +
Sbjct: 12 KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 69
Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163
IG+++ ++A + +NS V
Sbjct: 70 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDV 100
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
+Y R L L +G GQ L + + +I A G+ L L G+G I+D + V +
Sbjct: 15 KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 72
Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163
IG+++ ++A + +NS V
Sbjct: 73 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDV 103
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
+Y R L L +G GQ L + + +I A G+ L L G+G I+D + V +
Sbjct: 14 KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 71
Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163
IG+++ ++A + +NS V
Sbjct: 72 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDV 102
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
+Y R L L +G GQ L + + +I A G+ L L G+G I+D + V +
Sbjct: 14 KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 71
Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163
IG+++ ++A + +NS V
Sbjct: 72 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDV 102
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN 132
+Y R L L +G GQ L + + +I A G+ L L G+G I+D + V +
Sbjct: 12 KYDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 69
Query: 133 MHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163
IG+++ ++A + +NS V
Sbjct: 70 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDV 100
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135
++V+GAG +G A YLA GV L + D N H
Sbjct: 6 VIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHH 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,807,753
Number of Sequences: 62578
Number of extensions: 396955
Number of successful extensions: 997
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 40
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)