Query 019513
Match_columns 340
No_of_seqs 321 out of 1998
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2017 Molybdopterin synthase 100.0 1.2E-82 2.7E-87 591.7 22.7 274 61-338 34-307 (427)
2 PRK07411 hypothetical protein; 100.0 3.3E-61 7.1E-66 473.0 27.7 260 65-335 10-269 (390)
3 PRK07688 thiamine/molybdopteri 100.0 6.3E-59 1.4E-63 448.7 27.2 263 71-335 2-268 (339)
4 PRK07878 molybdopterin biosynt 100.0 1.3E-58 2.7E-63 455.3 29.5 260 64-334 13-276 (392)
5 PRK12475 thiamine/molybdopteri 100.0 8.6E-59 1.9E-63 447.6 26.9 263 71-335 2-268 (338)
6 PRK05690 molybdopterin biosynt 100.0 2.9E-58 6.3E-63 426.2 26.9 241 65-308 4-245 (245)
7 TIGR02355 moeB molybdopterin s 100.0 1.1E-57 2.3E-62 420.9 25.6 238 71-311 2-240 (240)
8 PRK08762 molybdopterin biosynt 100.0 2.8E-57 6E-62 444.0 29.0 267 63-334 105-375 (376)
9 PRK05600 thiamine biosynthesis 100.0 1.5E-57 3.2E-62 443.6 26.9 250 64-314 12-264 (370)
10 PRK05597 molybdopterin biosynt 100.0 2.2E-57 4.8E-62 441.0 26.1 242 67-309 2-243 (355)
11 PRK08223 hypothetical protein; 100.0 2.4E-56 5.2E-61 417.8 25.3 230 71-303 7-266 (287)
12 PRK08328 hypothetical protein; 100.0 1E-53 2.3E-58 392.6 24.7 229 66-301 2-231 (231)
13 cd00757 ThiF_MoeB_HesA_family 100.0 7.4E-52 1.6E-56 379.7 24.6 228 73-301 1-228 (228)
14 COG0476 ThiF Dinucleotide-util 100.0 1.7E-51 3.6E-56 383.1 23.8 248 65-312 2-253 (254)
15 TIGR03603 cyclo_dehy_ocin bact 100.0 2.5E-50 5.5E-55 385.4 23.1 240 64-320 45-303 (318)
16 TIGR02356 adenyl_thiF thiazole 100.0 5.8E-50 1.3E-54 360.8 20.0 201 73-275 1-202 (202)
17 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4E-45 8.6E-50 328.0 20.7 193 71-295 1-193 (197)
18 cd01485 E1-1_like Ubiquitin ac 100.0 3.2E-44 6.9E-49 322.5 21.6 189 73-294 1-193 (198)
19 cd01488 Uba3_RUB Ubiquitin act 100.0 2.3E-42 4.9E-47 325.3 24.7 215 95-312 1-291 (291)
20 cd01491 Ube1_repeat1 Ubiquitin 100.0 3.6E-41 7.9E-46 316.7 20.6 211 73-293 1-280 (286)
21 PRK08644 thiamine biosynthesis 100.0 5.4E-40 1.2E-44 297.9 19.7 193 81-280 16-211 (212)
22 TIGR01381 E1_like_apg7 E1-like 100.0 1E-39 2.3E-44 330.2 21.6 235 73-314 321-612 (664)
23 PRK14852 hypothetical protein; 100.0 3.4E-39 7.3E-44 339.3 20.8 227 72-301 313-568 (989)
24 PRK14851 hypothetical protein; 100.0 5E-39 1.1E-43 333.0 21.1 235 65-302 17-280 (679)
25 PRK07877 hypothetical protein; 100.0 2.6E-37 5.7E-42 321.0 21.1 216 65-287 79-332 (722)
26 cd01489 Uba2_SUMO Ubiquitin ac 100.0 3.9E-37 8.4E-42 292.7 19.2 145 95-239 1-146 (312)
27 PRK15116 sulfur acceptor prote 100.0 1.3E-36 2.8E-41 283.5 20.3 213 64-278 3-263 (268)
28 cd01484 E1-2_like Ubiquitin ac 100.0 1.8E-36 3.8E-41 278.1 18.6 145 95-239 1-147 (234)
29 KOG2015 NEDD8-activating compl 100.0 3.4E-36 7.3E-41 278.7 18.2 229 84-315 31-338 (422)
30 cd01487 E1_ThiF_like E1_ThiF_l 100.0 7.3E-36 1.6E-40 263.1 17.8 171 95-272 1-174 (174)
31 TIGR02354 thiF_fam2 thiamine b 100.0 1.1E-35 2.3E-40 267.4 18.0 186 81-275 9-200 (200)
32 KOG2336 Molybdopterin biosynth 100.0 1E-35 2.2E-40 271.1 14.7 243 61-309 47-313 (422)
33 cd00755 YgdL_like Family of ac 100.0 2E-34 4.3E-39 264.1 19.0 190 83-272 1-231 (231)
34 TIGR01408 Ube1 ubiquitin-activ 100.0 5E-35 1.1E-39 313.6 17.4 177 71-251 399-584 (1008)
35 TIGR01408 Ube1 ubiquitin-activ 100.0 1.9E-34 4E-39 309.2 21.3 150 70-225 3-154 (1008)
36 COG1179 Dinucleotide-utilizing 100.0 2E-34 4.3E-39 259.4 17.4 210 68-279 7-259 (263)
37 cd01486 Apg7 Apg7 is an E1-lik 100.0 3E-33 6.6E-38 262.3 22.0 217 95-315 1-279 (307)
38 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.9E-33 6.3E-38 276.4 19.4 204 72-278 1-221 (425)
39 KOG2013 SMT3/SUMO-activating c 100.0 1.2E-33 2.6E-38 273.0 15.0 152 86-237 5-157 (603)
40 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.1E-32 2.3E-37 271.6 17.2 155 95-251 1-164 (435)
41 KOG2014 SMT3/SUMO-activating c 100.0 2.1E-32 4.6E-37 251.9 16.2 230 63-296 3-323 (331)
42 PF00899 ThiF: ThiF family; I 100.0 3.8E-32 8.3E-37 229.5 15.7 134 92-225 1-134 (135)
43 cd01483 E1_enzyme_family Super 100.0 2E-30 4.3E-35 220.9 15.5 133 95-227 1-133 (143)
44 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.9E-29 6.2E-34 231.0 15.8 206 91-301 9-243 (244)
45 PTZ00245 ubiquitin activating 100.0 1.3E-29 2.9E-34 230.3 11.3 118 66-192 1-118 (287)
46 PRK06153 hypothetical protein; 99.9 8.1E-27 1.8E-31 225.3 18.4 149 86-242 169-320 (393)
47 KOG2018 Predicted dinucleotide 99.9 2.4E-27 5.1E-32 219.4 12.4 221 72-294 55-325 (430)
48 TIGR03693 ocin_ThiF_like putat 99.9 7.6E-26 1.7E-30 227.6 18.8 231 63-313 95-336 (637)
49 KOG2012 Ubiquitin activating e 99.9 6.7E-26 1.5E-30 230.5 13.5 149 71-225 17-165 (1013)
50 KOG2012 Ubiquitin activating e 99.9 2.1E-26 4.6E-31 234.1 8.8 183 65-251 400-595 (1013)
51 KOG2016 NEDD8-activating compl 99.9 3.7E-24 8E-29 205.7 11.2 206 69-276 5-226 (523)
52 KOG2337 Ubiquitin activating E 99.8 3.1E-20 6.7E-25 181.5 11.7 189 87-279 334-567 (669)
53 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.8 3E-20 6.4E-25 144.6 5.9 83 229-314 1-83 (84)
54 COG4015 Predicted dinucleotide 98.7 2.7E-07 5.8E-12 79.2 12.9 180 93-277 18-212 (217)
55 TIGR03882 cyclo_dehyd_2 bacter 98.4 3.9E-06 8.4E-11 75.2 12.4 95 84-237 96-193 (193)
56 PRK12549 shikimate 5-dehydroge 98.2 4.7E-06 1E-10 79.1 9.1 78 90-192 124-201 (284)
57 COG1748 LYS9 Saccharopine dehy 98.2 7.9E-06 1.7E-10 80.3 10.7 98 94-216 2-100 (389)
58 PF01488 Shikimate_DH: Shikima 98.2 6.3E-06 1.4E-10 69.5 7.9 81 89-196 8-88 (135)
59 PRK06718 precorrin-2 dehydroge 98.0 7.2E-05 1.6E-09 67.5 11.4 92 89-211 6-97 (202)
60 PF13241 NAD_binding_7: Putati 97.8 3.1E-05 6.7E-10 62.2 5.5 88 90-214 4-91 (103)
61 TIGR01470 cysG_Nterm siroheme 97.8 0.00028 6E-09 63.9 12.0 94 90-213 6-99 (205)
62 PF03435 Saccharop_dh: Sacchar 97.7 0.00015 3.2E-09 71.5 9.1 96 96-215 1-98 (386)
63 PRK14027 quinate/shikimate deh 97.7 0.00016 3.5E-09 68.6 8.6 79 91-192 125-203 (283)
64 PRK06719 precorrin-2 dehydroge 97.7 0.00049 1.1E-08 59.6 10.7 87 88-207 8-94 (157)
65 PRK12548 shikimate 5-dehydroge 97.6 0.00022 4.7E-09 67.8 8.9 84 91-192 124-208 (289)
66 PRK05562 precorrin-2 dehydroge 97.5 0.0014 3E-08 60.0 11.9 97 88-214 20-116 (223)
67 TIGR01809 Shik-DH-AROM shikima 97.4 0.00045 9.8E-09 65.5 8.0 78 91-193 123-200 (282)
68 PRK11199 tyrA bifunctional cho 97.4 0.00058 1.3E-08 67.3 8.5 112 13-126 1-131 (374)
69 PRK12749 quinate/shikimate deh 97.4 0.00072 1.6E-08 64.3 8.4 83 91-192 122-205 (288)
70 COG0373 HemA Glutamyl-tRNA red 97.3 0.00044 9.5E-09 68.6 6.4 76 90-195 175-250 (414)
71 PRK00258 aroE shikimate 5-dehy 97.3 0.00072 1.6E-08 63.9 7.5 76 90-193 120-195 (278)
72 COG0169 AroE Shikimate 5-dehyd 97.3 0.00095 2.1E-08 63.3 8.0 145 91-281 124-269 (283)
73 PRK13940 glutamyl-tRNA reducta 97.2 0.00073 1.6E-08 67.5 6.9 77 90-195 178-254 (414)
74 PF01113 DapB_N: Dihydrodipico 97.2 0.0029 6.2E-08 52.5 9.4 96 95-216 2-99 (124)
75 cd01065 NAD_bind_Shikimate_DH 97.1 0.0016 3.4E-08 55.4 7.2 36 91-126 17-52 (155)
76 cd05311 NAD_bind_2_malic_enz N 97.1 0.0013 2.7E-08 60.5 7.0 37 90-126 22-60 (226)
77 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0013 2.8E-08 57.7 6.5 35 90-125 41-76 (168)
78 PRK14106 murD UDP-N-acetylmura 97.1 0.0033 7.1E-08 63.1 10.4 96 90-213 2-97 (450)
79 COG1648 CysG Siroheme synthase 97.1 0.0018 4E-08 58.8 7.4 95 89-213 8-102 (210)
80 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0025 5.5E-08 61.2 8.7 83 91-203 176-258 (311)
81 COG0569 TrkA K+ transport syst 97.0 0.0071 1.5E-07 55.5 11.2 97 94-216 1-100 (225)
82 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0033 7.2E-08 62.9 9.0 77 90-196 177-253 (417)
83 PLN02819 lysine-ketoglutarate 96.9 0.0087 1.9E-07 65.9 11.7 99 91-215 567-679 (1042)
84 cd05291 HicDH_like L-2-hydroxy 96.9 0.0054 1.2E-07 58.7 9.1 74 94-194 1-79 (306)
85 PRK10637 cysG siroheme synthas 96.8 0.0091 2E-07 60.5 10.6 94 89-212 8-101 (457)
86 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0057 1.2E-07 52.7 7.8 94 95-214 1-102 (157)
87 PF00056 Ldh_1_N: lactate/mala 96.7 0.0047 1E-07 52.5 6.8 77 95-194 2-80 (141)
88 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0087 1.9E-07 53.2 8.7 84 90-195 25-109 (194)
89 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.011 2.5E-07 53.1 9.5 36 90-126 25-60 (200)
90 PF03949 Malic_M: Malic enzyme 96.7 0.0082 1.8E-07 56.0 8.7 106 89-215 21-140 (255)
91 cd05312 NAD_bind_1_malic_enz N 96.7 0.017 3.8E-07 54.5 10.6 105 89-215 21-139 (279)
92 PF03807 F420_oxidored: NADP o 96.7 0.013 2.8E-07 45.7 8.3 90 95-215 1-94 (96)
93 PTZ00082 L-lactate dehydrogena 96.6 0.011 2.3E-07 57.2 9.2 36 91-126 4-39 (321)
94 PLN00203 glutamyl-tRNA reducta 96.6 0.0075 1.6E-07 62.0 8.2 78 91-195 264-341 (519)
95 COG1086 Predicted nucleoside-d 96.6 0.011 2.3E-07 60.6 9.0 88 86-192 243-334 (588)
96 PRK00045 hemA glutamyl-tRNA re 96.5 0.0049 1.1E-07 61.8 6.5 75 91-195 180-254 (423)
97 PRK00066 ldh L-lactate dehydro 96.5 0.0097 2.1E-07 57.4 8.2 77 92-193 5-83 (315)
98 PRK04148 hypothetical protein; 96.4 0.025 5.3E-07 47.8 9.0 94 92-215 16-109 (134)
99 cd00762 NAD_bind_malic_enz NAD 96.4 0.022 4.7E-07 53.2 9.2 106 89-215 21-140 (254)
100 cd05290 LDH_3 A subgroup of L- 96.3 0.022 4.8E-07 54.7 9.3 73 95-194 1-79 (307)
101 PRK06522 2-dehydropantoate 2-r 96.3 0.036 7.8E-07 52.3 10.6 31 95-126 2-32 (304)
102 PTZ00117 malate dehydrogenase; 96.3 0.017 3.7E-07 55.7 8.4 36 91-126 3-38 (319)
103 PRK01438 murD UDP-N-acetylmura 96.3 0.016 3.5E-07 58.7 8.6 94 91-213 14-107 (480)
104 PRK14192 bifunctional 5,10-met 96.3 0.015 3.2E-07 55.3 7.6 34 90-124 156-190 (283)
105 PRK00048 dihydrodipicolinate r 96.3 0.04 8.8E-07 51.4 10.5 87 94-214 2-90 (257)
106 PRK05476 S-adenosyl-L-homocyst 96.2 0.011 2.4E-07 59.2 7.0 37 90-127 209-245 (425)
107 TIGR00518 alaDH alanine dehydr 96.2 0.075 1.6E-06 52.4 12.5 36 90-126 164-199 (370)
108 PF03446 NAD_binding_2: NAD bi 96.2 0.01 2.2E-07 51.4 5.6 123 94-227 2-136 (163)
109 cd00401 AdoHcyase S-adenosyl-L 96.1 0.034 7.3E-07 55.6 9.8 36 91-127 200-235 (413)
110 PRK14619 NAD(P)H-dependent gly 96.1 0.026 5.6E-07 54.0 8.8 33 93-126 4-36 (308)
111 cd00300 LDH_like L-lactate deh 96.1 0.027 5.8E-07 53.9 8.7 73 96-194 1-77 (300)
112 PRK00676 hemA glutamyl-tRNA re 96.1 0.017 3.7E-07 56.1 7.2 36 90-125 171-206 (338)
113 PRK06197 short chain dehydroge 96.0 0.036 7.8E-07 52.5 9.2 42 83-125 6-48 (306)
114 cd05211 NAD_bind_Glu_Leu_Phe_V 96.0 0.039 8.5E-07 50.4 9.0 39 89-127 19-57 (217)
115 PRK09496 trkA potassium transp 96.0 0.08 1.7E-06 53.0 12.2 96 91-212 229-326 (453)
116 PLN02602 lactate dehydrogenase 96.0 0.02 4.2E-07 56.1 7.5 75 94-194 38-116 (350)
117 PRK12550 shikimate 5-dehydroge 96.0 0.015 3.3E-07 54.9 6.4 34 93-126 122-155 (272)
118 PRK08618 ornithine cyclodeamin 96.0 0.035 7.5E-07 53.7 9.0 96 91-215 125-221 (325)
119 PRK06141 ornithine cyclodeamin 96.0 0.02 4.3E-07 55.1 7.2 78 90-194 122-200 (314)
120 PRK15469 ghrA bifunctional gly 96.0 0.035 7.6E-07 53.5 8.8 92 88-215 131-226 (312)
121 cd05293 LDH_1 A subgroup of L- 96.0 0.022 4.7E-07 54.9 7.4 75 93-193 3-81 (312)
122 PF02254 TrkA_N: TrkA-N domain 96.0 0.17 3.7E-06 40.6 11.7 84 96-207 1-86 (116)
123 PRK13403 ketol-acid reductoiso 95.9 0.059 1.3E-06 52.1 10.0 80 88-202 11-90 (335)
124 TIGR00507 aroE shikimate 5-deh 95.9 0.056 1.2E-06 50.7 9.8 34 91-125 115-148 (270)
125 PRK08293 3-hydroxybutyryl-CoA 95.9 0.033 7.1E-07 52.7 8.3 32 94-126 4-35 (287)
126 PRK00094 gpsA NAD(P)H-dependen 95.9 0.032 6.9E-07 53.3 8.2 31 95-126 3-33 (325)
127 PLN02494 adenosylhomocysteinas 95.9 0.0099 2.1E-07 60.0 4.8 62 65-127 224-287 (477)
128 cd05191 NAD_bind_amino_acid_DH 95.9 0.017 3.6E-07 44.6 4.9 39 89-127 19-57 (86)
129 TIGR02853 spore_dpaA dipicolin 95.8 0.027 5.7E-07 53.6 7.3 35 90-125 148-182 (287)
130 TIGR02992 ectoine_eutC ectoine 95.8 0.049 1.1E-06 52.7 9.1 76 92-193 128-204 (326)
131 PRK02705 murD UDP-N-acetylmura 95.8 0.087 1.9E-06 53.0 11.2 97 94-213 1-97 (459)
132 KOG4169 15-hydroxyprostaglandi 95.8 0.03 6.6E-07 51.3 6.9 81 91-192 3-92 (261)
133 PF13460 NAD_binding_10: NADH( 95.8 0.15 3.2E-06 44.1 11.2 88 96-212 1-93 (183)
134 PF02558 ApbA: Ketopantoate re 95.7 0.013 2.9E-07 49.5 4.3 90 96-206 1-90 (151)
135 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.04 8.7E-07 52.2 8.0 33 94-127 4-36 (291)
136 PTZ00325 malate dehydrogenase; 95.7 0.036 7.7E-07 53.6 7.7 80 91-194 6-87 (321)
137 COG1893 ApbA Ketopantoate redu 95.7 0.081 1.8E-06 50.8 10.0 88 94-208 1-92 (307)
138 PRK07634 pyrroline-5-carboxyla 95.7 0.1 2.2E-06 47.8 10.4 92 92-214 3-98 (245)
139 PF02719 Polysacc_synt_2: Poly 95.7 0.025 5.4E-07 53.9 6.3 101 96-215 1-127 (293)
140 PRK11880 pyrroline-5-carboxyla 95.6 0.074 1.6E-06 49.5 9.4 89 94-214 3-93 (267)
141 PRK07340 ornithine cyclodeamin 95.6 0.053 1.1E-06 52.0 8.4 78 90-195 122-200 (304)
142 PRK08306 dipicolinate synthase 95.6 0.047 1E-06 52.2 7.9 36 90-126 149-184 (296)
143 TIGR00936 ahcY adenosylhomocys 95.5 0.081 1.8E-06 52.8 9.7 36 91-127 193-228 (406)
144 PRK09599 6-phosphogluconate de 95.5 0.049 1.1E-06 51.9 7.9 116 95-219 2-123 (301)
145 PRK09242 tropinone reductase; 95.5 0.1 2.2E-06 47.8 9.8 84 90-193 6-98 (257)
146 PRK07680 late competence prote 95.5 0.11 2.3E-06 48.8 9.9 90 95-215 2-96 (273)
147 PRK06130 3-hydroxybutyryl-CoA 95.5 0.08 1.7E-06 50.5 9.2 32 94-126 5-36 (311)
148 PRK06223 malate dehydrogenase; 95.5 0.032 7E-07 53.2 6.4 32 94-125 3-34 (307)
149 PRK06932 glycerate dehydrogena 95.5 0.046 1E-06 52.6 7.4 87 89-215 143-233 (314)
150 PTZ00345 glycerol-3-phosphate 95.4 0.078 1.7E-06 52.2 9.0 102 92-214 10-128 (365)
151 TIGR03589 PseB UDP-N-acetylglu 95.4 0.21 4.5E-06 47.9 11.8 79 91-192 2-83 (324)
152 PLN02427 UDP-apiose/xylose syn 95.4 0.12 2.6E-06 50.7 10.2 114 89-222 10-142 (386)
153 COG1063 Tdh Threonine dehydrog 95.3 0.11 2.4E-06 50.6 9.8 97 92-212 168-267 (350)
154 TIGR00872 gnd_rel 6-phosphoglu 95.3 0.052 1.1E-06 51.7 7.3 115 95-218 2-121 (298)
155 PF01118 Semialdhyde_dh: Semia 95.3 0.091 2E-06 43.1 7.8 91 95-215 1-97 (121)
156 PRK06476 pyrroline-5-carboxyla 95.3 0.12 2.5E-06 48.1 9.4 88 95-213 2-91 (258)
157 PRK11908 NAD-dependent epimera 95.3 0.2 4.3E-06 48.3 11.4 102 94-221 2-123 (347)
158 PRK07062 short chain dehydroge 95.3 0.13 2.9E-06 47.2 9.8 83 90-192 5-96 (265)
159 PF10727 Rossmann-like: Rossma 95.3 0.036 7.9E-07 46.3 5.4 92 92-215 9-104 (127)
160 PRK00141 murD UDP-N-acetylmura 95.3 0.14 3E-06 52.1 10.7 39 86-125 8-46 (473)
161 PRK05479 ketol-acid reductoiso 95.3 0.099 2.1E-06 50.7 9.1 78 89-200 13-90 (330)
162 PRK07502 cyclohexadienyl dehyd 95.3 0.19 4.1E-06 48.0 10.9 34 93-126 6-40 (307)
163 PRK05875 short chain dehydroge 95.3 0.095 2.1E-06 48.5 8.7 35 90-125 4-39 (276)
164 PRK12769 putative oxidoreducta 95.2 0.1 2.2E-06 55.2 9.8 124 64-195 296-424 (654)
165 PRK13304 L-aspartate dehydroge 95.2 0.19 4.1E-06 47.2 10.6 32 95-126 3-36 (265)
166 PRK05708 2-dehydropantoate 2-r 95.2 0.069 1.5E-06 51.1 7.8 32 94-126 3-34 (305)
167 PRK04308 murD UDP-N-acetylmura 95.2 0.17 3.7E-06 50.8 11.0 94 91-213 3-96 (445)
168 PRK14618 NAD(P)H-dependent gly 95.2 0.083 1.8E-06 50.9 8.4 32 94-126 5-36 (328)
169 PRK12480 D-lactate dehydrogena 95.2 0.11 2.3E-06 50.5 9.0 89 89-215 142-234 (330)
170 PLN02240 UDP-glucose 4-epimera 95.2 0.24 5.2E-06 47.5 11.5 33 91-124 3-36 (352)
171 PRK14982 acyl-ACP reductase; P 95.2 0.027 5.9E-07 54.8 4.9 37 90-126 152-190 (340)
172 PF02826 2-Hacid_dh_C: D-isome 95.2 0.021 4.6E-07 50.2 3.8 94 87-215 30-127 (178)
173 PRK01710 murD UDP-N-acetylmura 95.2 0.12 2.7E-06 52.1 9.8 96 90-213 11-106 (458)
174 PRK02006 murD UDP-N-acetylmura 95.2 0.13 2.9E-06 52.4 10.1 35 91-126 5-39 (498)
175 PRK08410 2-hydroxyacid dehydro 95.1 0.048 1E-06 52.5 6.4 88 89-215 141-232 (311)
176 TIGR01915 npdG NADPH-dependent 95.1 0.24 5.1E-06 45.0 10.7 97 95-214 2-100 (219)
177 PRK07819 3-hydroxybutyryl-CoA 95.1 0.033 7.1E-07 52.9 5.2 33 94-127 6-38 (286)
178 PRK12439 NAD(P)H-dependent gly 95.1 0.2 4.4E-06 48.7 10.8 102 94-215 8-111 (341)
179 PRK07530 3-hydroxybutyryl-CoA 95.1 0.075 1.6E-06 50.3 7.6 33 93-126 4-36 (292)
180 PF00070 Pyr_redox: Pyridine n 95.1 0.042 9E-07 41.5 4.8 54 95-160 1-54 (80)
181 PRK12490 6-phosphogluconate de 95.1 0.08 1.7E-06 50.4 7.7 116 95-219 2-123 (299)
182 cd05292 LDH_2 A subgroup of L- 95.1 0.09 1.9E-06 50.4 8.0 32 95-126 2-34 (308)
183 PRK14175 bifunctional 5,10-met 95.0 0.068 1.5E-06 50.8 7.0 76 90-216 155-231 (286)
184 PRK05808 3-hydroxybutyryl-CoA 95.0 0.064 1.4E-06 50.5 6.8 33 94-127 4-36 (282)
185 PRK08291 ectoine utilization p 95.0 0.13 2.8E-06 49.9 8.9 76 93-194 132-208 (330)
186 PRK09880 L-idonate 5-dehydroge 95.0 0.18 3.9E-06 48.5 10.0 35 91-125 168-202 (343)
187 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.096 2.1E-06 49.8 8.0 35 91-125 143-177 (308)
188 COG0240 GpsA Glycerol-3-phosph 95.0 0.21 4.6E-06 48.2 10.2 101 94-215 2-105 (329)
189 COG0039 Mdh Malate/lactate deh 94.9 0.042 9.1E-07 52.8 5.3 32 94-125 1-33 (313)
190 PRK05854 short chain dehydroge 94.9 0.16 3.6E-06 48.4 9.5 64 90-173 11-75 (313)
191 PRK07066 3-hydroxybutyryl-CoA 94.9 0.12 2.5E-06 50.1 8.4 33 94-127 8-40 (321)
192 KOG0069 Glyoxylate/hydroxypyru 94.9 0.1 2.2E-06 50.7 7.8 84 88-206 157-241 (336)
193 PRK08229 2-dehydropantoate 2-r 94.9 0.089 1.9E-06 50.7 7.6 32 94-126 3-34 (341)
194 PRK09496 trkA potassium transp 94.9 0.25 5.3E-06 49.5 11.1 91 95-212 2-95 (453)
195 PRK06928 pyrroline-5-carboxyla 94.9 0.26 5.7E-06 46.4 10.6 90 95-214 3-97 (277)
196 KOG0024 Sorbitol dehydrogenase 94.9 0.22 4.8E-06 48.0 9.9 99 92-215 169-273 (354)
197 PRK12771 putative glutamate sy 94.9 0.13 2.8E-06 53.4 9.3 36 91-127 135-170 (564)
198 cd01076 NAD_bind_1_Glu_DH NAD( 94.9 0.19 4.1E-06 46.2 9.3 38 89-126 27-64 (227)
199 TIGR03376 glycerol3P_DH glycer 94.9 0.24 5.2E-06 48.4 10.5 102 95-214 1-115 (342)
200 PRK09260 3-hydroxybutyryl-CoA 94.9 0.23 5E-06 46.9 10.2 33 94-127 2-34 (288)
201 PF01408 GFO_IDH_MocA: Oxidore 94.8 0.34 7.3E-06 39.0 9.8 86 95-213 2-91 (120)
202 PRK07831 short chain dehydroge 94.8 0.2 4.4E-06 45.9 9.5 83 90-192 14-106 (262)
203 COG1064 AdhP Zn-dependent alco 94.8 0.15 3.3E-06 49.5 8.9 72 93-192 167-238 (339)
204 PLN03209 translocon at the inn 94.8 0.32 6.9E-06 50.6 11.7 83 91-193 78-169 (576)
205 TIGR00036 dapB dihydrodipicoli 94.8 0.26 5.7E-06 46.3 10.2 95 95-216 3-100 (266)
206 cd01339 LDH-like_MDH L-lactate 94.8 0.07 1.5E-06 50.9 6.4 31 96-126 1-31 (300)
207 PRK03562 glutathione-regulated 94.8 0.18 3.8E-06 53.2 9.9 88 93-208 400-489 (621)
208 PTZ00075 Adenosylhomocysteinas 94.7 0.052 1.1E-06 55.0 5.7 37 90-127 251-287 (476)
209 PRK12826 3-ketoacyl-(acyl-carr 94.7 0.16 3.4E-06 45.9 8.5 82 90-193 3-93 (251)
210 TIGR01763 MalateDH_bact malate 94.7 0.1 2.2E-06 50.0 7.4 32 94-125 2-33 (305)
211 COG0281 SfcA Malic enzyme [Ene 94.7 0.16 3.4E-06 50.4 8.7 124 63-216 153-300 (432)
212 PRK08374 homoserine dehydrogen 94.7 0.24 5.2E-06 48.2 10.0 108 94-215 3-122 (336)
213 PRK12921 2-dehydropantoate 2-r 94.7 0.16 3.5E-06 47.9 8.7 30 95-125 2-31 (305)
214 PRK09310 aroDE bifunctional 3- 94.6 0.087 1.9E-06 53.7 7.1 35 90-125 329-363 (477)
215 PRK08217 fabG 3-ketoacyl-(acyl 94.6 0.2 4.2E-06 45.3 8.8 35 91-126 3-38 (253)
216 PRK14620 NAD(P)H-dependent gly 94.6 0.21 4.6E-06 48.0 9.4 31 95-126 2-32 (326)
217 TIGR01759 MalateDH-SF1 malate 94.6 0.11 2.3E-06 50.4 7.3 79 94-194 4-90 (323)
218 TIGR01832 kduD 2-deoxy-D-gluco 94.6 0.2 4.4E-06 45.3 8.8 33 91-124 3-36 (248)
219 cd01337 MDH_glyoxysomal_mitoch 94.6 0.12 2.6E-06 49.7 7.5 32 95-126 2-35 (310)
220 PF05368 NmrA: NmrA-like famil 94.6 0.62 1.3E-05 42.1 11.9 97 96-217 1-103 (233)
221 PRK06270 homoserine dehydrogen 94.6 0.2 4.3E-06 48.8 9.1 22 94-115 3-24 (341)
222 TIGR00715 precor6x_red precorr 94.5 0.32 7E-06 45.5 10.1 93 95-214 2-98 (256)
223 PRK07231 fabG 3-ketoacyl-(acyl 94.5 0.15 3.2E-06 46.1 7.8 36 90-126 2-38 (251)
224 PRK06567 putative bifunctional 94.5 0.15 3.3E-06 55.9 8.9 42 91-133 381-422 (1028)
225 COG0111 SerA Phosphoglycerate 94.5 0.085 1.8E-06 51.1 6.4 91 90-215 139-233 (324)
226 PTZ00142 6-phosphogluconate de 94.5 0.062 1.3E-06 54.7 5.6 121 94-219 2-130 (470)
227 TIGR00873 gnd 6-phosphoglucona 94.5 0.13 2.8E-06 52.4 7.8 121 95-219 1-127 (467)
228 PRK15181 Vi polysaccharide bio 94.5 0.29 6.2E-06 47.4 10.0 114 89-221 11-146 (348)
229 cd01338 MDH_choloroplast_like 94.5 0.086 1.9E-06 51.0 6.3 33 93-125 2-41 (322)
230 cd02201 FtsZ_type1 FtsZ is a G 94.4 0.3 6.6E-06 46.8 9.9 107 95-216 2-122 (304)
231 cd01493 APPBP1_RUB Ubiquitin a 94.4 0.049 1.1E-06 54.7 4.7 41 257-298 384-424 (425)
232 PLN02852 ferredoxin-NADP+ redu 94.4 0.19 4.2E-06 51.4 9.0 97 92-195 25-126 (491)
233 PRK13302 putative L-aspartate 94.4 0.44 9.5E-06 44.9 10.8 35 92-126 5-41 (271)
234 TIGR01850 argC N-acetyl-gamma- 94.4 0.15 3.3E-06 49.7 7.9 97 95-216 2-100 (346)
235 PRK06249 2-dehydropantoate 2-r 94.4 0.083 1.8E-06 50.6 5.9 34 93-127 5-38 (313)
236 PRK12809 putative oxidoreducta 94.3 0.29 6.2E-06 51.7 10.4 126 64-195 279-407 (639)
237 TIGR03026 NDP-sugDHase nucleot 94.3 0.31 6.7E-06 48.6 10.1 41 95-136 2-42 (411)
238 TIGR00465 ilvC ketol-acid redu 94.3 0.41 8.9E-06 46.2 10.5 33 91-124 1-33 (314)
239 PRK07063 short chain dehydroge 94.3 0.24 5.1E-06 45.4 8.6 83 90-192 4-95 (260)
240 PRK07417 arogenate dehydrogena 94.3 0.36 7.8E-06 45.5 9.9 31 95-126 2-32 (279)
241 PRK03659 glutathione-regulated 94.3 0.29 6.3E-06 51.3 10.1 88 93-208 400-489 (601)
242 PRK07576 short chain dehydroge 94.2 0.16 3.6E-06 46.9 7.5 37 89-126 5-42 (264)
243 PRK13018 cell division protein 94.2 0.35 7.7E-06 47.8 10.1 37 91-127 26-64 (378)
244 PRK08125 bifunctional UDP-gluc 94.2 0.43 9.3E-06 50.6 11.4 105 91-221 313-437 (660)
245 PLN00106 malate dehydrogenase 94.2 0.14 3.1E-06 49.5 7.2 36 92-127 17-54 (323)
246 cd00650 LDH_MDH_like NAD-depen 94.2 0.13 2.8E-06 48.1 6.7 73 96-193 1-80 (263)
247 PRK07523 gluconate 5-dehydroge 94.2 0.33 7.1E-06 44.3 9.3 35 90-125 7-42 (255)
248 PRK13529 malate dehydrogenase; 94.2 0.32 7E-06 50.2 9.9 112 89-215 291-416 (563)
249 PLN00141 Tic62-NAD(P)-related 94.2 0.56 1.2E-05 43.0 10.9 34 88-122 12-46 (251)
250 PRK12779 putative bifunctional 94.1 0.27 5.9E-06 54.2 10.0 95 92-194 305-403 (944)
251 PLN03139 formate dehydrogenase 94.1 0.14 3.1E-06 50.7 7.2 93 89-215 195-291 (386)
252 PLN02350 phosphogluconate dehy 94.1 0.13 2.9E-06 52.5 7.1 121 94-219 7-136 (493)
253 PRK09330 cell division protein 94.1 0.35 7.5E-06 48.0 9.8 111 91-216 11-135 (384)
254 TIGR00065 ftsZ cell division p 94.1 0.37 7.9E-06 47.2 9.8 122 87-223 11-148 (349)
255 TIGR02622 CDP_4_6_dhtase CDP-g 94.1 0.39 8.4E-06 46.3 10.0 35 91-126 2-37 (349)
256 PRK07679 pyrroline-5-carboxyla 94.1 0.44 9.6E-06 44.8 10.2 91 93-214 3-98 (279)
257 COG0771 MurD UDP-N-acetylmuram 94.1 0.22 4.7E-06 50.3 8.4 38 91-129 5-42 (448)
258 PRK12491 pyrroline-5-carboxyla 94.1 0.49 1.1E-05 44.6 10.4 90 93-214 2-96 (272)
259 TIGR01318 gltD_gamma_fam gluta 94.1 0.32 6.8E-06 49.4 9.7 63 63-126 109-173 (467)
260 PRK02472 murD UDP-N-acetylmura 94.0 0.18 3.8E-06 50.5 7.8 35 91-126 3-37 (447)
261 cd08239 THR_DH_like L-threonin 94.0 0.44 9.6E-06 45.5 10.2 34 92-125 163-196 (339)
262 COG1250 FadB 3-hydroxyacyl-CoA 94.0 0.07 1.5E-06 51.2 4.5 80 94-192 4-91 (307)
263 TIGR01181 dTDP_gluc_dehyt dTDP 94.0 0.5 1.1E-05 44.1 10.3 31 95-125 1-33 (317)
264 PRK06949 short chain dehydroge 93.9 0.34 7.4E-06 44.1 8.9 34 91-125 7-41 (258)
265 PF00106 adh_short: short chai 93.9 0.28 6E-06 41.5 7.7 83 94-195 1-92 (167)
266 cd08230 glucose_DH Glucose deh 93.9 0.36 7.8E-06 46.6 9.4 33 92-125 172-204 (355)
267 PRK05866 short chain dehydroge 93.9 0.33 7.1E-06 45.9 8.9 35 90-125 37-72 (293)
268 TIGR01772 MDH_euk_gproteo mala 93.9 0.14 3.1E-06 49.3 6.5 33 95-127 1-35 (312)
269 PRK15438 erythronate-4-phospha 93.8 0.16 3.5E-06 50.2 6.9 35 90-125 113-147 (378)
270 PRK07574 formate dehydrogenase 93.8 0.22 4.8E-06 49.4 7.8 93 89-215 188-284 (385)
271 PLN03129 NADP-dependent malic 93.8 0.43 9.3E-06 49.5 10.1 104 89-215 317-435 (581)
272 TIGR01316 gltA glutamate synth 93.8 0.53 1.1E-05 47.5 10.8 61 64-126 102-165 (449)
273 PRK06545 prephenate dehydrogen 93.8 0.18 3.9E-06 49.4 7.2 32 94-126 1-32 (359)
274 PTZ00188 adrenodoxin reductase 93.8 0.39 8.4E-06 49.1 9.6 96 92-194 38-137 (506)
275 PRK12862 malic enzyme; Reviewe 93.8 0.27 5.8E-06 53.0 8.9 39 89-127 189-229 (763)
276 PLN02206 UDP-glucuronate decar 93.8 0.38 8.3E-06 48.5 9.6 105 90-221 116-238 (442)
277 TIGR01757 Malate-DH_plant mala 93.8 0.32 6.9E-06 48.3 8.8 79 93-194 44-131 (387)
278 COG1091 RfbD dTDP-4-dehydrorha 93.8 0.42 9.2E-06 45.3 9.2 90 95-216 2-100 (281)
279 PLN02688 pyrroline-5-carboxyla 93.8 0.45 9.7E-06 44.2 9.5 87 95-214 2-94 (266)
280 PRK08057 cobalt-precorrin-6x r 93.7 0.77 1.7E-05 42.8 10.8 92 93-214 2-98 (248)
281 PRK07478 short chain dehydroge 93.7 0.38 8.3E-06 43.8 8.7 81 90-192 3-92 (254)
282 PRK05872 short chain dehydroge 93.7 0.54 1.2E-05 44.3 10.0 35 90-125 6-41 (296)
283 PRK09186 flagellin modificatio 93.7 0.29 6.3E-06 44.5 7.9 33 91-124 2-35 (256)
284 PRK06125 short chain dehydroge 93.6 0.46 9.9E-06 43.5 9.2 36 90-126 4-40 (259)
285 PF00670 AdoHcyase_NAD: S-aden 93.6 0.26 5.7E-06 42.9 7.0 39 89-128 19-57 (162)
286 PF03721 UDPG_MGDP_dh_N: UDP-g 93.6 0.11 2.5E-06 46.1 4.9 87 94-195 1-88 (185)
287 PRK13394 3-hydroxybutyrate deh 93.6 0.44 9.6E-06 43.4 9.0 35 90-125 4-39 (262)
288 cd08281 liver_ADH_like1 Zinc-d 93.6 0.44 9.6E-06 46.4 9.5 34 92-125 191-224 (371)
289 PRK03803 murD UDP-N-acetylmura 93.6 0.56 1.2E-05 47.1 10.4 92 93-213 6-97 (448)
290 PRK08277 D-mannonate oxidoredu 93.6 0.52 1.1E-05 43.6 9.5 36 90-126 7-43 (278)
291 PRK06194 hypothetical protein; 93.5 0.39 8.5E-06 44.6 8.7 35 90-125 3-38 (287)
292 PRK13303 L-aspartate dehydroge 93.5 0.59 1.3E-05 43.8 9.8 31 94-124 2-33 (265)
293 PRK06138 short chain dehydroge 93.5 0.47 1E-05 42.9 9.0 34 91-125 3-37 (252)
294 PRK06198 short chain dehydroge 93.5 0.39 8.4E-06 43.8 8.5 37 90-126 3-40 (260)
295 PRK03369 murD UDP-N-acetylmura 93.5 0.6 1.3E-05 47.7 10.6 89 92-213 11-99 (488)
296 PRK12939 short chain dehydroge 93.5 0.4 8.6E-06 43.3 8.5 81 90-192 4-93 (250)
297 PRK05225 ketol-acid reductoiso 93.5 0.41 8.8E-06 48.4 8.9 33 88-120 31-63 (487)
298 PRK08818 prephenate dehydrogen 93.4 0.37 8E-06 47.6 8.6 35 91-125 2-37 (370)
299 PRK08251 short chain dehydroge 93.4 0.62 1.3E-05 42.2 9.6 79 93-191 2-89 (248)
300 PRK11790 D-3-phosphoglycerate 93.4 0.26 5.7E-06 49.2 7.6 89 89-215 147-239 (409)
301 PRK07531 bifunctional 3-hydrox 93.4 0.61 1.3E-05 47.8 10.4 32 94-126 5-36 (495)
302 TIGR01505 tartro_sem_red 2-hyd 93.3 0.43 9.2E-06 45.1 8.7 112 95-217 1-120 (291)
303 PF04321 RmlD_sub_bind: RmlD s 93.3 0.49 1.1E-05 44.7 9.1 93 95-218 2-103 (286)
304 PRK12384 sorbitol-6-phosphate 93.3 0.67 1.5E-05 42.3 9.7 80 93-192 2-90 (259)
305 PRK14194 bifunctional 5,10-met 93.3 0.27 5.9E-06 47.1 7.1 78 89-217 155-233 (301)
306 PRK08213 gluconate 5-dehydroge 93.3 0.51 1.1E-05 43.2 8.8 36 89-125 8-44 (259)
307 PRK10669 putative cation:proto 93.2 0.64 1.4E-05 48.2 10.5 77 93-197 417-495 (558)
308 PLN02780 ketoreductase/ oxidor 93.2 0.55 1.2E-05 45.1 9.4 62 92-173 52-114 (320)
309 cd00704 MDH Malate dehydrogena 93.2 0.13 2.9E-06 49.7 5.0 33 94-126 1-40 (323)
310 PRK05442 malate dehydrogenase; 93.2 0.23 5E-06 48.2 6.6 32 94-125 5-43 (326)
311 PLN02928 oxidoreductase family 93.2 0.1 2.2E-06 51.0 4.3 104 89-215 155-262 (347)
312 PRK04207 glyceraldehyde-3-phos 93.2 0.78 1.7E-05 44.7 10.3 38 178-216 73-110 (341)
313 PRK06139 short chain dehydroge 93.2 0.42 9.1E-06 46.2 8.4 35 90-125 4-39 (330)
314 PRK13301 putative L-aspartate 93.1 0.32 6.9E-06 45.7 7.2 109 94-212 3-118 (267)
315 PRK12810 gltD glutamate syntha 93.1 0.78 1.7E-05 46.5 10.7 62 64-126 112-175 (471)
316 TIGR03451 mycoS_dep_FDH mycoth 93.1 0.61 1.3E-05 45.1 9.5 34 92-125 176-209 (358)
317 PRK06181 short chain dehydroge 93.1 0.53 1.1E-05 43.1 8.7 77 94-192 2-87 (263)
318 PRK08339 short chain dehydroge 93.1 0.52 1.1E-05 43.5 8.7 35 91-126 6-41 (263)
319 PRK07232 bifunctional malic en 93.1 0.4 8.7E-06 51.4 8.7 39 89-127 181-221 (752)
320 PRK09987 dTDP-4-dehydrorhamnos 93.1 0.42 9.2E-06 45.2 8.2 29 95-125 2-31 (299)
321 PLN02572 UDP-sulfoquinovose sy 93.1 1.4 3.1E-05 44.3 12.4 36 89-125 43-79 (442)
322 PF10087 DUF2325: Uncharacteri 93.0 0.6 1.3E-05 36.8 7.8 71 147-219 10-86 (97)
323 PRK15409 bifunctional glyoxyla 93.0 0.3 6.4E-06 47.3 7.2 91 89-215 141-236 (323)
324 cd05313 NAD_bind_2_Glu_DH NAD( 93.0 1.2 2.5E-05 41.8 10.8 37 89-125 34-70 (254)
325 cd05294 LDH-like_MDH_nadp A la 93.0 0.13 2.8E-06 49.4 4.7 33 94-126 1-35 (309)
326 TIGR01373 soxB sarcosine oxida 93.0 0.16 3.5E-06 50.1 5.4 43 93-135 30-73 (407)
327 PRK07035 short chain dehydroge 93.0 0.57 1.2E-05 42.6 8.7 35 90-125 5-40 (252)
328 PRK06436 glycerate dehydrogena 93.0 0.11 2.4E-06 49.8 4.0 42 83-125 112-153 (303)
329 PRK12861 malic enzyme; Reviewe 93.0 0.4 8.7E-06 51.4 8.6 39 89-127 185-225 (764)
330 PTZ00431 pyrroline carboxylate 92.9 0.67 1.5E-05 43.2 9.2 83 92-213 2-88 (260)
331 COG0665 DadA Glycine/D-amino a 92.9 0.16 3.4E-06 49.4 5.1 44 92-136 3-46 (387)
332 PRK12775 putative trifunctiona 92.9 0.58 1.3E-05 52.1 10.1 97 92-194 429-528 (1006)
333 PRK14031 glutamate dehydrogena 92.9 0.42 9E-06 48.2 8.1 37 90-126 225-261 (444)
334 PRK15059 tartronate semialdehy 92.8 0.72 1.6E-05 43.9 9.4 121 95-227 2-135 (292)
335 PRK07814 short chain dehydroge 92.8 0.61 1.3E-05 42.9 8.8 35 91-126 8-43 (263)
336 PRK13984 putative oxidoreducta 92.8 0.52 1.1E-05 49.3 9.2 35 92-127 282-316 (604)
337 PLN02657 3,8-divinyl protochlo 92.8 1.2 2.6E-05 44.1 11.2 34 91-125 58-92 (390)
338 PRK05565 fabG 3-ketoacyl-(acyl 92.8 0.56 1.2E-05 42.1 8.3 31 90-120 2-33 (247)
339 PRK06392 homoserine dehydrogen 92.8 0.74 1.6E-05 44.7 9.5 20 95-114 2-21 (326)
340 COG2085 Predicted dinucleotide 92.8 1.1 2.3E-05 40.7 9.9 91 94-215 2-93 (211)
341 PLN02695 GDP-D-mannose-3',5'-e 92.8 0.61 1.3E-05 45.7 9.1 33 92-125 20-53 (370)
342 PRK11064 wecC UDP-N-acetyl-D-m 92.8 0.65 1.4E-05 46.5 9.3 35 93-128 3-37 (415)
343 PF03447 NAD_binding_3: Homose 92.7 0.58 1.3E-05 37.9 7.5 85 100-216 1-91 (117)
344 PLN02214 cinnamoyl-CoA reducta 92.7 1.3 2.8E-05 42.7 11.3 105 91-216 8-127 (342)
345 TIGR01771 L-LDH-NAD L-lactate 92.7 0.28 6E-06 47.0 6.4 69 98-193 1-74 (299)
346 PF02737 3HCDH_N: 3-hydroxyacy 92.7 0.14 3.1E-06 45.2 4.1 32 95-127 1-32 (180)
347 PRK12814 putative NADPH-depend 92.7 0.75 1.6E-05 48.7 10.2 63 64-127 162-226 (652)
348 PRK04690 murD UDP-N-acetylmura 92.7 0.62 1.3E-05 47.3 9.2 36 91-127 6-41 (468)
349 TIGR03206 benzo_BadH 2-hydroxy 92.7 0.64 1.4E-05 42.0 8.6 34 91-125 1-35 (250)
350 PRK07774 short chain dehydroge 92.7 0.75 1.6E-05 41.6 9.0 36 90-126 3-39 (250)
351 PRK06914 short chain dehydroge 92.7 0.78 1.7E-05 42.4 9.3 34 92-126 2-36 (280)
352 COG1052 LdhA Lactate dehydroge 92.7 0.36 7.8E-06 46.8 7.1 89 89-214 142-235 (324)
353 TIGR03466 HpnA hopanoid-associ 92.7 0.77 1.7E-05 43.2 9.4 31 95-126 2-33 (328)
354 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.6 0.15 3.2E-06 52.4 4.6 33 93-126 5-37 (503)
355 PLN02166 dTDP-glucose 4,6-dehy 92.6 0.76 1.6E-05 46.3 9.7 34 92-126 119-153 (436)
356 PRK09853 putative selenate red 92.6 0.44 9.5E-06 52.8 8.4 36 91-127 537-572 (1019)
357 PRK11259 solA N-methyltryptoph 92.6 0.16 3.5E-06 49.2 4.7 35 93-128 3-37 (376)
358 PLN02896 cinnamyl-alcohol dehy 92.6 1.9 4E-05 41.7 12.1 32 92-124 9-41 (353)
359 cd05297 GH4_alpha_glucosidase_ 92.6 0.45 9.7E-06 47.8 8.0 90 95-209 2-102 (423)
360 PRK00683 murD UDP-N-acetylmura 92.6 0.51 1.1E-05 47.1 8.3 34 92-126 2-35 (418)
361 PLN02253 xanthoxin dehydrogena 92.5 0.81 1.8E-05 42.4 9.2 35 90-125 15-50 (280)
362 PRK11749 dihydropyrimidine deh 92.5 0.8 1.7E-05 46.1 9.8 34 92-126 139-172 (457)
363 TIGR01292 TRX_reduct thioredox 92.5 0.5 1.1E-05 43.9 7.8 32 95-127 2-33 (300)
364 COG0300 DltE Short-chain dehyd 92.5 0.85 1.8E-05 42.9 9.2 81 91-192 4-93 (265)
365 PRK08594 enoyl-(acyl carrier p 92.5 0.78 1.7E-05 42.3 9.0 34 90-124 4-40 (257)
366 PLN02520 bifunctional 3-dehydr 92.5 0.16 3.4E-06 52.5 4.7 34 91-125 377-410 (529)
367 PRK06046 alanine dehydrogenase 92.5 0.63 1.4E-05 45.0 8.7 75 92-193 128-203 (326)
368 smart00846 Gp_dh_N Glyceraldeh 92.5 0.17 3.7E-06 43.4 4.2 109 95-212 2-115 (149)
369 COG0686 Ald Alanine dehydrogen 92.5 0.2 4.3E-06 48.0 4.9 77 91-194 166-242 (371)
370 PRK05867 short chain dehydroge 92.5 0.73 1.6E-05 42.0 8.7 35 90-125 6-41 (253)
371 CHL00194 ycf39 Ycf39; Provisio 92.5 1.5 3.2E-05 41.7 11.1 95 95-217 2-111 (317)
372 PLN02740 Alcohol dehydrogenase 92.5 1.1 2.3E-05 44.0 10.3 34 92-125 198-231 (381)
373 PRK12429 3-hydroxybutyrate deh 92.4 0.67 1.4E-05 42.0 8.3 34 91-125 2-36 (258)
374 PF01266 DAO: FAD dependent ox 92.4 0.19 4.1E-06 47.5 4.9 33 95-128 1-33 (358)
375 PRK12829 short chain dehydroge 92.4 0.7 1.5E-05 42.1 8.5 36 89-125 7-43 (264)
376 PRK12748 3-ketoacyl-(acyl-carr 92.4 0.86 1.9E-05 41.6 9.1 36 90-126 2-40 (256)
377 TIGR01214 rmlD dTDP-4-dehydror 92.4 0.82 1.8E-05 42.4 9.1 30 95-125 1-31 (287)
378 PRK07326 short chain dehydroge 92.3 0.72 1.6E-05 41.3 8.4 34 91-125 4-38 (237)
379 PF02629 CoA_binding: CoA bind 92.3 0.78 1.7E-05 36.0 7.5 91 92-215 2-93 (96)
380 PRK12823 benD 1,6-dihydroxycyc 92.3 0.82 1.8E-05 41.7 8.9 36 89-125 4-40 (260)
381 PRK13243 glyoxylate reductase; 92.3 0.18 3.9E-06 49.0 4.6 91 89-215 146-240 (333)
382 PF11336 DUF3138: Protein of u 92.3 0.42 9E-06 47.4 7.0 59 14-72 24-86 (514)
383 PRK06124 gluconate 5-dehydroge 92.3 0.81 1.8E-05 41.6 8.7 36 90-126 8-44 (256)
384 PRK11559 garR tartronate semia 92.3 0.59 1.3E-05 44.1 8.0 32 94-126 3-34 (296)
385 PLN02653 GDP-mannose 4,6-dehyd 92.2 0.83 1.8E-05 43.7 9.1 34 91-125 4-38 (340)
386 PRK08589 short chain dehydroge 92.2 0.73 1.6E-05 42.7 8.4 34 90-124 3-37 (272)
387 PRK10675 UDP-galactose-4-epime 92.2 2 4.4E-05 40.8 11.7 29 95-124 2-31 (338)
388 cd08237 ribitol-5-phosphate_DH 92.2 0.56 1.2E-05 45.2 7.9 34 92-125 163-197 (341)
389 PRK12409 D-amino acid dehydrog 92.2 0.2 4.3E-06 49.5 4.8 33 94-127 2-34 (410)
390 PRK07792 fabG 3-ketoacyl-(acyl 92.2 0.71 1.5E-05 43.8 8.4 83 89-192 8-98 (306)
391 PTZ00317 NADP-dependent malic 92.1 0.73 1.6E-05 47.6 8.9 39 89-127 293-341 (559)
392 TIGR03366 HpnZ_proposed putati 92.1 1 2.2E-05 42.0 9.4 35 91-125 119-153 (280)
393 KOG2016 NEDD8-activating compl 92.0 0.19 4E-06 50.1 4.3 45 256-301 479-523 (523)
394 PRK06523 short chain dehydroge 92.0 0.63 1.4E-05 42.5 7.7 37 90-127 6-43 (260)
395 COG1062 AdhC Zn-dependent alco 92.0 1.4 3.1E-05 42.8 10.1 35 92-126 185-219 (366)
396 TIGR01296 asd_B aspartate-semi 92.0 0.59 1.3E-05 45.5 7.8 91 95-215 1-92 (339)
397 PRK07666 fabG 3-ketoacyl-(acyl 92.0 0.89 1.9E-05 40.9 8.5 36 90-126 4-40 (239)
398 PF02571 CbiJ: Precorrin-6x re 92.0 1.3 2.8E-05 41.4 9.6 92 94-213 1-98 (249)
399 PRK06172 short chain dehydroge 91.9 0.69 1.5E-05 42.0 7.8 34 91-125 5-39 (253)
400 PRK07109 short chain dehydroge 91.9 0.8 1.7E-05 44.2 8.6 81 90-192 5-94 (334)
401 PRK12831 putative oxidoreducta 91.9 1.2 2.5E-05 45.2 10.1 62 64-126 110-172 (464)
402 PRK06935 2-deoxy-D-gluconate 3 91.9 0.86 1.9E-05 41.6 8.5 35 90-125 12-47 (258)
403 PRK10217 dTDP-glucose 4,6-dehy 91.9 1.1 2.4E-05 43.1 9.5 32 94-125 2-34 (355)
404 PRK01390 murD UDP-N-acetylmura 91.8 0.37 8.1E-06 48.5 6.5 34 90-124 6-39 (460)
405 PRK09564 coenzyme A disulfide 91.8 0.28 6.1E-06 48.9 5.5 34 94-127 1-35 (444)
406 PRK10309 galactitol-1-phosphat 91.8 1.4 3E-05 42.3 10.1 34 92-125 160-193 (347)
407 PRK04663 murD UDP-N-acetylmura 91.7 0.89 1.9E-05 45.6 9.0 93 90-213 3-97 (438)
408 PRK05653 fabG 3-ketoacyl-(acyl 91.7 0.84 1.8E-05 40.8 8.1 35 91-126 3-38 (246)
409 PRK08945 putative oxoacyl-(acy 91.7 1.3 2.8E-05 40.1 9.4 37 89-126 8-45 (247)
410 PRK09424 pntA NAD(P) transhydr 91.7 1 2.2E-05 46.4 9.4 36 90-126 162-197 (509)
411 PRK06079 enoyl-(acyl carrier p 91.7 1 2.2E-05 41.3 8.7 35 90-125 4-41 (252)
412 PRK08416 7-alpha-hydroxysteroi 91.7 1.1 2.4E-05 41.0 9.0 33 90-123 5-38 (260)
413 PRK14188 bifunctional 5,10-met 91.7 0.55 1.2E-05 44.9 7.0 77 90-217 155-232 (296)
414 PRK09072 short chain dehydroge 91.7 1.3 2.8E-05 40.6 9.4 36 90-126 2-38 (263)
415 PRK08655 prephenate dehydrogen 91.7 0.46 9.9E-06 47.9 6.8 31 95-126 2-33 (437)
416 PRK07453 protochlorophyllide o 91.7 0.88 1.9E-05 43.3 8.5 34 91-125 4-38 (322)
417 PLN02353 probable UDP-glucose 91.6 0.39 8.4E-06 49.0 6.3 88 94-195 2-90 (473)
418 PRK12367 short chain dehydroge 91.6 0.31 6.8E-06 44.9 5.2 40 86-126 7-47 (245)
419 PRK06487 glycerate dehydrogena 91.6 0.22 4.8E-06 48.0 4.3 86 89-215 144-233 (317)
420 PRK07984 enoyl-(acyl carrier p 91.5 1 2.2E-05 41.8 8.5 34 91-125 4-40 (262)
421 PRK07890 short chain dehydroge 91.5 1.1 2.5E-05 40.6 8.8 34 91-125 3-37 (258)
422 TIGR01087 murD UDP-N-acetylmur 91.5 1.5 3.3E-05 43.7 10.3 31 95-126 1-31 (433)
423 PRK00811 spermidine synthase; 91.5 0.82 1.8E-05 43.3 7.9 35 92-127 76-110 (283)
424 TIGR02371 ala_DH_arch alanine 91.5 0.97 2.1E-05 43.7 8.6 75 92-193 127-202 (325)
425 PRK10537 voltage-gated potassi 91.4 1.2 2.6E-05 44.4 9.3 88 91-208 238-327 (393)
426 PLN00016 RNA-binding protein; 91.4 0.88 1.9E-05 44.5 8.4 117 86-221 45-170 (378)
427 PRK05086 malate dehydrogenase; 91.4 0.65 1.4E-05 44.7 7.3 33 94-126 1-36 (312)
428 PRK06940 short chain dehydroge 91.4 0.95 2.1E-05 42.2 8.3 31 93-125 2-32 (275)
429 TIGR01377 soxA_mon sarcosine o 91.4 0.26 5.7E-06 47.8 4.7 33 95-128 2-34 (380)
430 PTZ00079 NADP-specific glutama 91.4 2 4.3E-05 43.5 10.8 37 90-126 234-270 (454)
431 PF01494 FAD_binding_3: FAD bi 91.3 0.25 5.3E-06 46.7 4.3 33 94-127 2-34 (356)
432 PRK05876 short chain dehydroge 91.3 1.4 2.9E-05 41.2 9.2 34 91-125 4-38 (275)
433 cd05298 GH4_GlvA_pagL_like Gly 91.2 1.1 2.3E-05 45.3 8.9 105 95-222 2-113 (437)
434 cd05296 GH4_P_beta_glucosidase 91.2 0.68 1.5E-05 46.5 7.4 105 95-221 2-113 (419)
435 PRK00421 murC UDP-N-acetylmura 91.2 1.3 2.8E-05 44.7 9.6 90 91-213 5-95 (461)
436 PLN00112 malate dehydrogenase 91.2 0.95 2.1E-05 45.7 8.4 77 93-194 100-187 (444)
437 PLN02712 arogenate dehydrogena 91.1 1.1 2.3E-05 47.8 9.1 36 90-126 366-401 (667)
438 PRK05335 tRNA (uracil-5-)-meth 91.1 0.3 6.5E-06 49.1 4.7 32 93-125 2-33 (436)
439 PRK07806 short chain dehydroge 91.1 1.4 3.1E-05 39.8 8.9 34 90-124 3-37 (248)
440 PRK12778 putative bifunctional 91.1 1.5 3.3E-05 47.2 10.5 62 64-126 400-463 (752)
441 PRK08264 short chain dehydroge 91.1 0.37 7.9E-06 43.4 5.0 38 90-127 3-41 (238)
442 COG0287 TyrA Prephenate dehydr 91.0 1 2.2E-05 42.7 8.1 33 93-126 3-35 (279)
443 TIGR03315 Se_ygfK putative sel 91.0 0.9 1.9E-05 50.4 8.7 35 92-127 536-570 (1012)
444 PRK03806 murD UDP-N-acetylmura 91.0 0.72 1.6E-05 46.2 7.5 35 91-126 4-38 (438)
445 PRK06349 homoserine dehydrogen 91.0 1.2 2.6E-05 44.7 9.0 22 93-114 3-24 (426)
446 PRK12744 short chain dehydroge 91.0 1.4 3E-05 40.3 8.8 33 90-122 5-38 (257)
447 PRK08063 enoyl-(acyl carrier p 90.9 1.1 2.4E-05 40.5 8.0 30 91-120 2-32 (250)
448 PF01370 Epimerase: NAD depend 90.8 1.8 4E-05 38.4 9.3 100 96-222 1-122 (236)
449 PRK14189 bifunctional 5,10-met 90.8 0.7 1.5E-05 44.0 6.7 77 90-217 155-232 (285)
450 PLN00198 anthocyanidin reducta 90.8 3.6 7.7E-05 39.3 11.8 35 91-126 7-42 (338)
451 PRK05855 short chain dehydroge 90.8 1.1 2.3E-05 45.9 8.7 84 87-192 309-401 (582)
452 PRK06720 hypothetical protein; 90.8 1.7 3.8E-05 37.8 8.8 36 90-126 13-49 (169)
453 TIGR01472 gmd GDP-mannose 4,6- 90.8 1.9 4.1E-05 41.4 9.9 31 94-125 1-32 (343)
454 PRK12937 short chain dehydroge 90.7 1.2 2.6E-05 40.0 8.1 32 91-123 3-35 (245)
455 TIGR01317 GOGAT_sm_gam glutama 90.7 1.9 4.1E-05 44.0 10.3 35 92-127 142-176 (485)
456 KOG0022 Alcohol dehydrogenase, 90.7 0.95 2.1E-05 43.6 7.4 98 92-213 192-293 (375)
457 PRK08085 gluconate 5-dehydroge 90.6 1.4 3.1E-05 40.0 8.5 34 90-124 6-40 (254)
458 PRK00436 argC N-acetyl-gamma-g 90.6 1.1 2.4E-05 43.7 8.1 95 94-215 3-99 (343)
459 PRK06199 ornithine cyclodeamin 90.5 1.5 3.3E-05 43.4 9.1 76 93-193 155-233 (379)
460 TIGR02818 adh_III_F_hyde S-(hy 90.5 2.5 5.4E-05 41.2 10.6 34 92-125 185-218 (368)
461 KOG1502 Flavonol reductase/cin 90.5 2.4 5.1E-05 41.1 10.0 106 92-217 5-130 (327)
462 PRK07494 2-octaprenyl-6-methox 90.5 0.35 7.7E-06 47.2 4.6 34 93-127 7-40 (388)
463 COG1712 Predicted dinucleotide 90.4 0.95 2E-05 41.6 6.9 32 95-126 2-35 (255)
464 PRK07889 enoyl-(acyl carrier p 90.4 1.2 2.7E-05 40.8 8.0 35 90-125 4-41 (256)
465 PRK07074 short chain dehydroge 90.4 1.3 2.8E-05 40.3 8.1 32 93-125 2-34 (257)
466 PRK08303 short chain dehydroge 90.4 2.3 5.1E-05 40.4 10.1 36 90-126 5-41 (305)
467 PRK06129 3-hydroxyacyl-CoA deh 90.4 0.37 8E-06 46.0 4.5 33 94-127 3-35 (308)
468 PLN02827 Alcohol dehydrogenase 90.3 1.7 3.6E-05 42.7 9.2 34 92-125 193-226 (378)
469 PRK06184 hypothetical protein; 90.3 0.36 7.9E-06 49.2 4.7 34 92-126 2-35 (502)
470 PRK06113 7-alpha-hydroxysteroi 90.3 1.4 3E-05 40.2 8.2 34 90-124 8-42 (255)
471 PRK12859 3-ketoacyl-(acyl-carr 90.3 1.6 3.5E-05 39.9 8.6 35 89-124 2-39 (256)
472 PRK10084 dTDP-glucose 4,6 dehy 90.3 2.1 4.6E-05 41.0 9.8 30 95-124 2-32 (352)
473 PRK14030 glutamate dehydrogena 90.3 2.5 5.4E-05 42.8 10.4 36 90-125 225-260 (445)
474 PRK14874 aspartate-semialdehyd 90.3 1.4 3E-05 42.8 8.5 90 94-215 2-94 (334)
475 PRK01747 mnmC bifunctional tRN 90.3 0.36 7.8E-06 51.1 4.7 33 94-127 261-293 (662)
476 TIGR01746 Thioester-redct thio 90.3 2.7 5.8E-05 39.9 10.4 30 95-124 1-32 (367)
477 PRK07067 sorbitol dehydrogenas 90.2 0.72 1.6E-05 42.1 6.2 37 90-127 3-40 (257)
478 PRK06128 oxidoreductase; Provi 90.2 1.5 3.3E-05 41.2 8.6 35 88-123 50-85 (300)
479 PRK00711 D-amino acid dehydrog 90.2 0.38 8.3E-06 47.3 4.6 32 95-127 2-33 (416)
480 TIGR02632 RhaD_aldol-ADH rhamn 90.2 1.4 3.1E-05 46.8 9.2 34 91-125 412-446 (676)
481 PRK11730 fadB multifunctional 90.2 0.41 8.9E-06 51.3 5.1 33 94-127 314-346 (715)
482 PRK05714 2-octaprenyl-3-methyl 90.1 0.35 7.5E-06 47.6 4.3 33 94-127 3-35 (405)
483 PRK08773 2-octaprenyl-3-methyl 90.1 0.36 7.9E-06 47.3 4.4 34 93-127 6-39 (392)
484 PRK15076 alpha-galactosidase; 90.1 0.8 1.7E-05 46.1 6.9 106 94-222 2-117 (431)
485 PRK11150 rfaD ADP-L-glycero-D- 90.1 1.6 3.5E-05 41.0 8.6 31 96-126 2-33 (308)
486 COG2084 MmsB 3-hydroxyisobutyr 90.0 0.91 2E-05 43.2 6.8 125 94-228 1-138 (286)
487 PRK15461 NADH-dependent gamma- 90.0 1.3 2.9E-05 42.0 8.0 123 94-227 2-137 (296)
488 PRK05717 oxidoreductase; Valid 90.0 1.5 3.1E-05 40.1 8.0 36 90-126 7-43 (255)
489 PRK06185 hypothetical protein; 90.0 0.43 9.4E-06 46.9 4.8 35 92-127 5-39 (407)
490 COG0493 GltD NADPH-dependent g 90.0 0.94 2E-05 46.0 7.2 100 90-195 120-220 (457)
491 PF12847 Methyltransf_18: Meth 89.9 1.7 3.7E-05 34.1 7.4 78 92-191 1-78 (112)
492 TIGR03364 HpnW_proposed FAD de 89.9 0.47 1E-05 45.9 5.0 34 95-129 2-35 (365)
493 cd08300 alcohol_DH_class_III c 89.9 2.5 5.5E-05 41.0 10.1 34 92-125 186-219 (368)
494 TIGR02028 ChlP geranylgeranyl 89.9 0.39 8.5E-06 47.5 4.4 31 95-126 2-32 (398)
495 PRK07454 short chain dehydroge 89.9 1.9 4.2E-05 38.7 8.7 32 93-125 6-38 (241)
496 PRK08628 short chain dehydroge 89.8 1.7 3.7E-05 39.5 8.4 35 90-125 4-39 (258)
497 PRK05472 redox-sensing transcr 89.8 2.6 5.6E-05 38.1 9.4 34 93-126 84-119 (213)
498 COG0345 ProC Pyrroline-5-carbo 89.8 2.6 5.7E-05 39.7 9.6 90 94-215 2-95 (266)
499 PRK07608 ubiquinone biosynthes 89.8 0.45 9.8E-06 46.3 4.7 34 94-128 6-39 (388)
500 PRK07236 hypothetical protein; 89.8 0.47 1E-05 46.5 4.9 36 91-127 4-39 (386)
No 1
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-82 Score=591.66 Aligned_cols=274 Identities=60% Similarity=1.018 Sum_probs=269.8
Q ss_pred CCCCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC
Q 019513 61 AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT 140 (340)
Q Consensus 61 ~~~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~ 140 (340)
.+...||.+|+.||+|||++|+||..||.+|++++|+||||||+||+++.||+.+|||+|+|||+|.||.+|||||++|+
T Consensus 34 ~~~~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ 113 (427)
T KOG2017|consen 34 SREAGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHT 113 (427)
T ss_pred ccccCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce
Q 019513 141 EPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE 220 (340)
Q Consensus 141 ~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~ 220 (340)
++++|+.||++|+..++++||+++|..|+..++++|+++++++||+|+|||||+++||+|+|+|+..|+|+|++++++|+
T Consensus 114 ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~E 193 (427)
T KOG2017|consen 114 EARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWE 193 (427)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEE
Q 019513 221 GQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300 (340)
Q Consensus 221 G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~ 300 (340)
||++|++++.+|||||+||.|||+.++++|.++|++||++|++|+|||+|+||+++|.++++.+++++||++++.|++++
T Consensus 194 GQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~ir 273 (427)
T KOG2017|consen 194 GQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIR 273 (427)
T ss_pred ceeEEeecCCCceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccCCCCccccccccccchhcccCCCCCCC
Q 019513 301 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTI 338 (340)
Q Consensus 301 l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~~~~~ 338 (340)
+|+|+++|.+||+++++|.. +||+.|||++++++
T Consensus 274 lR~r~~~C~~Cg~n~tit~~----~dYe~fCg~~~~~~ 307 (427)
T KOG2017|consen 274 LRSRRPKCAVCGKNPTITSL----IDYELFCGSSATDK 307 (427)
T ss_pred eccCCCCCcccCCCCccCcc----cchhcccCCccccc
Confidence 99999999999999999977 99999999999986
No 2
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=3.3e-61 Score=472.99 Aligned_cols=260 Identities=49% Similarity=0.867 Sum_probs=247.3
Q ss_pred CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (340)
Q Consensus 65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di 144 (340)
.|+..+.+||+||+++|+||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++||
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (340)
Q Consensus 145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~ 224 (340)
|++|+++++++|+++||+++|+++...+++++..++++++|+||||+|++++|++||++|++.++|+|++++.|+.|++.
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~ 169 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQAT 169 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEE
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCC
Q 019513 225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 304 (340)
Q Consensus 225 v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~ 304 (340)
++.++.+|||+|+||.+|+....++|...|++||+++++|+++|.||||+|+|.++++.++++.||+.+++|+.+++. +
T Consensus 170 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~ 248 (390)
T PRK07411 170 VFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR-P 248 (390)
T ss_pred EECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEecc-C
Confidence 998888999999999877666667899999999999999999999999999999999999999999999999999998 7
Q ss_pred CCCCCccCCCCccccccccccchhcccCCCC
Q 019513 305 SSQCEACGENSTFTQDHFRNFDYEKFTQSPL 335 (340)
Q Consensus 305 ~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~~ 335 (340)
+|+|++| +.. .+|++|||...
T Consensus 249 ~~~c~~i------~~~----~~~~~~~G~~~ 269 (390)
T PRK07411 249 NPERPVI------EKL----IDYEQFCGIPQ 269 (390)
T ss_pred CCCCCcc------ccc----cchhhhccccc
Confidence 8999875 222 58999998753
No 3
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=6.3e-59 Score=448.69 Aligned_cols=263 Identities=28% Similarity=0.472 Sum_probs=243.3
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc--Cccc
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI--GQSK 148 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di--G~~K 148 (340)
.+||+||++++.||.++|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.+||+||++|.++|+ |++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999 5699
Q ss_pred HHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513 149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (340)
Q Consensus 149 a~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~ 228 (340)
+++++++|+++||+++++++...+++++..++++++|+||+|+|++.+|+++|++|+++++|||++++.|+.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p 161 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP 161 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999988888
Q ss_pred CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEec-CCCCC
Q 019513 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR-GRSSQ 307 (340)
Q Consensus 229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~-~~~~~ 307 (340)
+.+|||+|+++.+|+.. ..|.+.|+++|+++++|+++|.|+||+|+|.++++.++++.||..+.+|+.+++. .++|+
T Consensus 162 ~~~pC~~Cl~~~~~~~~--~~c~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~ 239 (339)
T PRK07688 162 GKTPCLRCLLQSIPLGG--ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDN 239 (339)
T ss_pred CCCCCeEeecCCCCCCC--CCCccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCC
Confidence 88999999999876543 5799999999999999999999999999999999999999999999999999875 36799
Q ss_pred CCccCCCCcccccccc-ccchhcccCCCC
Q 019513 308 CEACGENSTFTQDHFR-NFDYEKFTQSPL 335 (340)
Q Consensus 308 C~~Cg~~~~~~~~~~~-~~~y~~fcg~~~ 335 (340)
||+||.++.++..+.+ ..+|+.|||...
T Consensus 240 Cp~Cg~~~~~~~~~~~~~~~~~~lcg~~~ 268 (339)
T PRK07688 240 CPSCGEKALYPYLNYENTTKTAVLCGRNT 268 (339)
T ss_pred CCCCCCCCCccccchhhccchhhhcCccc
Confidence 9999987765544322 367889999743
No 4
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.3e-58 Score=455.31 Aligned_cols=260 Identities=46% Similarity=0.777 Sum_probs=244.5
Q ss_pred CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d 143 (340)
..|+.++.+||+||+.+|.||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||++|+++|
T Consensus 13 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 92 (392)
T PRK07878 13 AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92 (392)
T ss_pred cCCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEE
Q 019513 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (340)
Q Consensus 144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i 223 (340)
||++|+++++++|+++||+++|.++...++.++..++++++|+||+|+|++.+|++||++|+++++|||++++.|+.|++
T Consensus 93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v 172 (392)
T PRK07878 93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQA 172 (392)
T ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEeC----CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEE
Q 019513 224 TVYNY----NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 299 (340)
Q Consensus 224 ~v~~~----~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~ 299 (340)
+++.+ +.+|||+|+|+.+++....++|...|++||+++++|+++|.|+||+|+|.++++.++++.||..+++|+.+
T Consensus 173 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~ 252 (392)
T PRK07878 173 SVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTI 252 (392)
T ss_pred EEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeE
Confidence 98863 36899999999877666678999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCccCCCCccccccccccchhcccCCC
Q 019513 300 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 334 (340)
Q Consensus 300 ~l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~ 334 (340)
++. ++|+|+ +++.. .+|+.||+..
T Consensus 253 ~~~-~~~~C~------~~~~~----~~~~~~c~~~ 276 (392)
T PRK07878 253 KIR-KDPSTP------KITEL----IDYEAFCGVV 276 (392)
T ss_pred eec-cCCCCC------ccccc----ccchhhcccc
Confidence 998 789994 33333 5899999864
No 5
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=8.6e-59 Score=447.58 Aligned_cols=263 Identities=29% Similarity=0.464 Sum_probs=245.3
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC--ccc
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG--QSK 148 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG--~~K 148 (340)
.+||+||++++.||.++|++|++++|+|||+||+|+++|++|+++|||+|+|||+|.|+.+||+||++|+++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513 149 VKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (340)
Q Consensus 149 a~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~ 228 (340)
+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|++||++|+++++|||++++.|+.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P 161 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIP 161 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECC
Confidence 99999999999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC-CCCC
Q 019513 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG-RSSQ 307 (340)
Q Consensus 229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~-~~~~ 307 (340)
+.+|||+|+++..|... ..|...|+++|+++++|+++|.|++|+|+|..+++.++++.||.+++.|+.+++.. |+|+
T Consensus 162 ~~tpC~~Cl~~~~p~~~--~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~ 239 (338)
T PRK12475 162 GKTPCLRCLMEHVPVGG--ATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDT 239 (338)
T ss_pred CCCCCHHHhcCCCCCCC--CCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCC
Confidence 99999999998865433 46999999999999999999999999999999999999999999999999999963 5999
Q ss_pred CCccCCCCccccccccc-cchhcccCCCC
Q 019513 308 CEACGENSTFTQDHFRN-FDYEKFTQSPL 335 (340)
Q Consensus 308 C~~Cg~~~~~~~~~~~~-~~y~~fcg~~~ 335 (340)
||+||++++++....+. .+|+.+||...
T Consensus 240 Cp~Cg~~~~~~~l~~~~~~~~~~LCgr~~ 268 (338)
T PRK12475 240 CPSCGLTRTYPSLTFENQTKTEVLCGRNT 268 (338)
T ss_pred CCcCCCCCcccccccccCCCeeeccCCce
Confidence 99999987776665444 78999999754
No 6
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.9e-58 Score=426.16 Aligned_cols=241 Identities=43% Similarity=0.758 Sum_probs=230.1
Q ss_pred CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (340)
Q Consensus 65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di 144 (340)
.|+.++++||+||++++.||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++||
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (340)
Q Consensus 145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~ 224 (340)
|++|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|++++++|+++++|+|++++.|+.|++.
T Consensus 84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 84 GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVT 163 (245)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEE
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecC
Q 019513 225 VYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG 303 (340)
Q Consensus 225 v~~~~~-~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~ 303 (340)
++.|+. +|||+|+++..++.. ..|...|+++|+++++|+++|+|++|+|+|.++++.|+++.||..+.+|+.+++.
T Consensus 164 ~~~~~~~~~c~~c~~~~~~~~~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~- 240 (245)
T PRK05690 164 VFTYQDDEPCYRCLSRLFGENA--LTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK- 240 (245)
T ss_pred EEecCCCCceeeeccCCCCCCC--CCcccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcC-
Confidence 998764 799999998765432 3799999999999999999999999999999999999999999999999999997
Q ss_pred CCCCC
Q 019513 304 RSSQC 308 (340)
Q Consensus 304 ~~~~C 308 (340)
|+|+|
T Consensus 241 ~~~~C 245 (245)
T PRK05690 241 RDPGC 245 (245)
T ss_pred CCcCC
Confidence 88988
No 7
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.1e-57 Score=420.94 Aligned_cols=238 Identities=41% Similarity=0.762 Sum_probs=224.7
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~ 150 (340)
++||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||+++.++|||++|++
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 57999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC-C
Q 019513 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N 229 (340)
Q Consensus 151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~-~ 229 (340)
+++++|+++||+++|++++..+++++..++++++|+||+|+|++.+|.++|++|+++++|+|++++.|+.|++.++.+ +
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 161 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD 161 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence 999999999999999999999998888899999999999999999999999999999999999999999999987763 5
Q ss_pred CCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCCCCC
Q 019513 230 GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 309 (340)
Q Consensus 230 ~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C~ 309 (340)
.+|||+|+++..+.. ...|...|+++|+++++|+++|+|++|+|+|.++++.++++.||..+.+|+.+++. ++|+||
T Consensus 162 ~~~c~~C~~~~~~~~--~~~~~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~-~~~~C~ 238 (240)
T TIGR02355 162 GEPCYRCLSRLFGEN--ALSCVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTCP 238 (240)
T ss_pred CCCccccccccCCCC--CCCccccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEecc-CCccCC
Confidence 679999997655432 24688899999999999999999999999999999999999999999999999998 899999
Q ss_pred cc
Q 019513 310 AC 311 (340)
Q Consensus 310 ~C 311 (340)
+|
T Consensus 239 ~C 240 (240)
T TIGR02355 239 VC 240 (240)
T ss_pred CC
Confidence 99
No 8
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.8e-57 Score=444.01 Aligned_cols=267 Identities=49% Similarity=0.884 Sum_probs=251.2
Q ss_pred CCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCC
Q 019513 63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP 142 (340)
Q Consensus 63 ~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~ 142 (340)
...++.++.+||+||+.++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++++++
T Consensus 105 ~~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~ 184 (376)
T PRK08762 105 PRLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTED 184 (376)
T ss_pred ccCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513 143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 143 diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
|||++|+++++++|+++||++++..+...+++++..++++++|+||+|+|++.+|+++|++|+++++|+|++++.|+.|+
T Consensus 185 diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 185 RVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred hCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 99999999999999999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEE
Q 019513 223 LTVYNYNG----GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 298 (340)
Q Consensus 223 i~v~~~~~----~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~ 298 (340)
+.++.|+. +|||+|+|+..+.....+.|...|++||+++++|+++|+|++|+|+|.++++.++++.||..+..|+.
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~ 344 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE 344 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence 99988765 89999999887666666789999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCccCCCCccccccccccchhcccCCC
Q 019513 299 VKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 334 (340)
Q Consensus 299 ~~l~~~~~~C~~Cg~~~~~~~~~~~~~~y~~fcg~~ 334 (340)
+++. |+|+|++||.++.++.- +||.+||+..
T Consensus 345 ~~~~-~~~~C~~C~~~~~~~~~----~~~~~~~~~~ 375 (376)
T PRK08762 345 LRLP-PDPHCPVCAPGRPFPGY----IDYAAFCAGA 375 (376)
T ss_pred Eecc-CCCCCCCCCCCCCcCcc----cchhhhhCCC
Confidence 9998 89999999987655433 7999999764
No 9
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.5e-57 Score=443.65 Aligned_cols=250 Identities=36% Similarity=0.637 Sum_probs=239.3
Q ss_pred CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d 143 (340)
++|+..|.+||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++|+++|
T Consensus 12 ~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~d 91 (370)
T PRK05600 12 MQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASD 91 (370)
T ss_pred CCCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEE
Q 019513 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 223 (340)
Q Consensus 144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i 223 (340)
||++|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|++||++|+++++|+|++++.|+.|++
T Consensus 92 iG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v 171 (370)
T PRK05600 92 VGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGEL 171 (370)
T ss_pred CCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEE
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred EEEeCC---CCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEE
Q 019513 224 TVYNYN---GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 300 (340)
Q Consensus 224 ~v~~~~---~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~ 300 (340)
.++.++ .+|||+|+||..++.....+|...|++||+++++|+++|.|++|+|+|.++++.++++.||..+++|+.++
T Consensus 172 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~ 251 (370)
T PRK05600 172 AVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFR 251 (370)
T ss_pred EEEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEE
Confidence 998864 37999999998766666678999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCccCCC
Q 019513 301 IRGRSSQCEACGEN 314 (340)
Q Consensus 301 l~~~~~~C~~Cg~~ 314 (340)
+. ++|+|++|.+.
T Consensus 252 ~~-~~~~c~~~~~~ 264 (370)
T PRK05600 252 VG-ADPARPLVTRL 264 (370)
T ss_pred ec-CCCCCCccccc
Confidence 98 78999998863
No 10
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.2e-57 Score=440.99 Aligned_cols=242 Identities=40% Similarity=0.679 Sum_probs=232.7
Q ss_pred CHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCc
Q 019513 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ 146 (340)
Q Consensus 67 ~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~ 146 (340)
...+.+||+||+++|.||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++|+|+
T Consensus 2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513 147 SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 226 (340)
Q Consensus 147 ~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~ 226 (340)
+|+++++++|+++||+++|+++...+++++..++++++|+||||+|++.+|+++|++|+++++|+|++++.|+.|++.++
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~ 161 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVF 161 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEE
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCC
Q 019513 227 NYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSS 306 (340)
Q Consensus 227 ~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~ 306 (340)
.|+.+|||+|+||..++......|...|++||+++++|+++|.|+||+|+|.++++.++++.||..+++|+.+++. ++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~~~ 240 (355)
T PRK05597 162 HAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV-GNP 240 (355)
T ss_pred cCCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc-CCC
Confidence 8888999999999877666677899999999999999999999999999999999999999999999999999998 788
Q ss_pred CCC
Q 019513 307 QCE 309 (340)
Q Consensus 307 ~C~ 309 (340)
+|.
T Consensus 241 ~~~ 243 (355)
T PRK05597 241 AVL 243 (355)
T ss_pred CCc
Confidence 884
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-56 Score=417.77 Aligned_cols=230 Identities=27% Similarity=0.357 Sum_probs=218.7
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~ 150 (340)
-+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++|+++|||++|++
T Consensus 7 ~~~ysRq~~~--iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 7 DEAFCRNLGW--ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred HHHHhhhhhh--cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 3799999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (340)
Q Consensus 151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~ 228 (340)
+++++|+++||+++|++++..++++|+.++++++|+||||+|++ ++|++||++|+++++|+|+++..|+.|++.++.|
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p 164 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDP 164 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcC
Confidence 99999999999999999999999999999999999999999986 8999999999999999999999999999999987
Q ss_pred CCCCceeecCCC---CCC--------CcccccccCCCcc----------------ccHHHHHHHHHHHHHHHHHhcCCCC
Q 019513 229 NGGPCYRCLFPT---PPP--------TTACQRCADSGVL----------------GVVPGIIGCLQALEAIKVASAVGEP 281 (340)
Q Consensus 229 ~~~pC~~C~~~~---~~~--------~~~~~~c~~~g~~----------------gpv~~i~g~l~A~eaik~l~g~~~~ 281 (340)
+ +|||+|+||. +|+ +..+++|.+.|++ |++++++|++||.|+||+|+|.+++
T Consensus 165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~ 243 (287)
T PRK08223 165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV 243 (287)
T ss_pred C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence 5 8999999998 444 2567899999999 9999999999999999999999998
Q ss_pred C-CCeEEEEEcCCCcEEEEEecC
Q 019513 282 L-SGRMLLFDALSARIRIVKIRG 303 (340)
Q Consensus 282 ~-~~~~~~fd~~~~~~~~~~l~~ 303 (340)
+ .++++.||+.+++|++.+++.
T Consensus 244 ~~~~~~~~~d~~~~~~~~~~~~~ 266 (287)
T PRK08223 244 YAAPWFHQFDAYRSRYVRTWRPG 266 (287)
T ss_pred CCCCeEEEEEcCCceEEEEEecC
Confidence 5 799999999999999999883
No 12
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1e-53 Score=392.57 Aligned_cols=229 Identities=37% Similarity=0.602 Sum_probs=217.6
Q ss_pred CCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC
Q 019513 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (340)
Q Consensus 66 l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG 145 (340)
|+..|.+||+||+.+ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||+++.++|+|
T Consensus 2 l~~~~~~ry~Rq~~~--~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 79 (231)
T PRK08328 2 LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLG 79 (231)
T ss_pred CCHHHHHHHhhHHHh--cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcC
Confidence 788899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513 146 Q-SKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (340)
Q Consensus 146 ~-~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~ 224 (340)
+ +|+++++++|+++||+++|+++...+++++..++++++|+||+|+|++.+|.+++++|+++++|+|++++.|+.|++.
T Consensus 80 ~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~ 159 (231)
T PRK08328 80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVT 159 (231)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEE
Confidence 9 699999999999999999999999888888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513 225 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301 (340)
Q Consensus 225 v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l 301 (340)
++.|+.++||+|+||..++ .+...|++||+++++|+++|+|++|+++|.++++.++++.||..+..|+.+++
T Consensus 160 ~~~p~~~~c~~~~~~~~~~-----~~~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 160 TIVPGKTKRLREIFPKVKK-----KKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred EECCCCCCCHHHhCCCCCC-----ccccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 9999999999999987542 35567899999999999999999999999999999999999999999988764
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=7.4e-52 Score=379.73 Aligned_cols=228 Identities=57% Similarity=0.996 Sum_probs=216.9
Q ss_pred hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (340)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a 152 (340)
||+||++++.||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+++||+||+++.++|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCC
Q 019513 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 232 (340)
Q Consensus 153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~p 232 (340)
+++|+++||+++++.++..++.++..++++++|+||+|+|++.+|.+++++|+++++|||+++..|+.|++.++.|+.++
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~ 160 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGP 160 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCC
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999998888899
Q ss_pred ceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513 233 CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301 (340)
Q Consensus 233 C~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l 301 (340)
||.|.++..+... ...|...|+++|+++++|+|+|.|++|+++|..+++.++++.||..++.|+++++
T Consensus 161 c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 161 CYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred CccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 9999998765432 4568889999999999999999999999999998889999999999999998864
No 14
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-51 Score=383.07 Aligned_cols=248 Identities=51% Similarity=0.889 Sum_probs=235.9
Q ss_pred CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (340)
Q Consensus 65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di 144 (340)
.|+..+++||+||++++.+|.++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||++|+++|+
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 47889999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEE
Q 019513 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 224 (340)
Q Consensus 145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~ 224 (340)
|++|++++++.++++||.++++++...++.+++.++++.+|+|++|+|++.+|+++|++|+++++|++++++.|++|+++
T Consensus 82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~ 161 (254)
T COG0476 82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVT 161 (254)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCCceeecCCCCCCCcccc-cccCCCccccHHHHHHHHHHHHHHHHHhcCC-CCCCCeEEEEEcCCC-cEEEEE
Q 019513 225 VYNYN-GGPCYRCLFPTPPPTTACQ-RCADSGVLGVVPGIIGCLQALEAIKVASAVG-EPLSGRMLLFDALSA-RIRIVK 300 (340)
Q Consensus 225 v~~~~-~~pC~~C~~~~~~~~~~~~-~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~-~~~~~~~~~fd~~~~-~~~~~~ 300 (340)
++.|+ .+|||+|+++..|+...+. .|.+.|+++++++++|++++.|++|+++|.+ ++..++++.||.... .|++++
T Consensus 162 ~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T COG0476 162 VIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLK 241 (254)
T ss_pred EEecCCCCCcccccCCCCCCccccccccccCCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhh
Confidence 99998 5999999999998766554 5999999999999999999999999999999 888999999999998 899999
Q ss_pred ecCCCCCCCccC
Q 019513 301 IRGRSSQCEACG 312 (340)
Q Consensus 301 l~~~~~~C~~Cg 312 (340)
.......||+||
T Consensus 242 ~~~~~~~~~~c~ 253 (254)
T COG0476 242 LRRRPISCPVCG 253 (254)
T ss_pred cccCCCCCCcCC
Confidence 984444599998
No 15
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=2.5e-50 Score=385.37 Aligned_cols=240 Identities=18% Similarity=0.228 Sum_probs=217.9
Q ss_pred CCCCHHHHhhhhhhccCCC-CC-HHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC
Q 019513 64 YGLSPDMIYRYSRHLLLPS-FG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE 141 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~-~G-~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~ 141 (340)
++|+.++++||+||+.++. || .++|++|++++|+ +||+|++++.+|++ |||+|+|+|+|.|+.|||+ ++|++
T Consensus 45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~ 118 (318)
T TIGR03603 45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK 118 (318)
T ss_pred hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence 4699999999999999977 57 5589999999999 99999999999999 9999999999999999999 99999
Q ss_pred CccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHH--HHHHHHHcCCcEEEEeecCc
Q 019513 142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYM--ISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~--i~~~~~~~~~p~i~~~~~g~ 219 (340)
+|||++|+++|+++|.++||+++++. ..++++++|+||||+|++.+|++ +|++|++.++|||+++..|+
T Consensus 119 ~diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~ 189 (318)
T TIGR03603 119 EFILKKDIRDLTSNLDALELTKNVDE---------LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGP 189 (318)
T ss_pred hhcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccC
Confidence 99999999999999999999999865 35678999999999999999977 99999999999999999999
Q ss_pred eeEEEEEeCCCCCceeecCCCC------------CC--CcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCC-CCC
Q 019513 220 EGQLTVYNYNGGPCYRCLFPTP------------PP--TTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP-LSG 284 (340)
Q Consensus 220 ~G~i~v~~~~~~pC~~C~~~~~------------~~--~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~-~~~ 284 (340)
.|++.++.|+.+|||+|+++.. ++ ......|...|++||+++++|+|+|.||+ +++|.+++ +.|
T Consensus 190 ~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g 268 (318)
T TIGR03603 190 FVFITCTLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEG 268 (318)
T ss_pred EEEEEEEeCCCCCcHHHccchhhcccccccccccccccCCCCCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCC
Confidence 9999988888899999998821 01 12234789999999999999999999999 99998886 579
Q ss_pred eEEEEEcCCCcEEEEEecCCCCCCCccCCCCccccc
Q 019513 285 RMLLFDALSARIRIVKIRGRSSQCEACGENSTFTQD 320 (340)
Q Consensus 285 ~~~~fd~~~~~~~~~~l~~~~~~C~~Cg~~~~~~~~ 320 (340)
+++.||..+..++.+++. |+|+||+||....+.-+
T Consensus 269 ~ll~id~~t~~~~~~~l~-k~p~Cp~CG~~~~~~~~ 303 (318)
T TIGR03603 269 RLLSINLPTLEIQFQDIL-KQSCCSTCGTFNKIKFE 303 (318)
T ss_pred eEEEEECCCCeEEEEecC-CCCCCcccCCccccchh
Confidence 999999999999999998 89999999998776544
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=5.8e-50 Score=360.82 Aligned_cols=201 Identities=49% Similarity=0.874 Sum_probs=192.1
Q ss_pred hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (340)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a 152 (340)
||+||++++.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+||++|+++|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC-CC
Q 019513 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GG 231 (340)
Q Consensus 153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~-~~ 231 (340)
+++|+++||+++++.++..+++++..++++++|+||+|+|++++|.+++++|+++++|||+++..|+.|++.++.|+ .+
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~ 160 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG 160 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999987 79
Q ss_pred CceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHH
Q 019513 232 PCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 275 (340)
Q Consensus 232 pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l 275 (340)
|||+|+|+..+ .....|...|+++|+++++|+|+|+|++|++
T Consensus 161 ~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 161 PCLRCLFPDIA--DTGPSCATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred CChhhcCCCCc--ccCCCCccCCccchHHHHHHHHHHHHHHHhC
Confidence 99999998732 2346799999999999999999999999985
No 17
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4e-45 Score=328.02 Aligned_cols=193 Identities=26% Similarity=0.429 Sum_probs=181.0
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~ 150 (340)
++||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++||++|+|+|+|.|+.+||+||++++++|+|++|++
T Consensus 1 ~~~Y~Rqi~l--~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~ 78 (197)
T cd01492 1 IALYDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE 78 (197)
T ss_pred CchhhHHHHH--hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHH
Confidence 3699999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCC
Q 019513 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG 230 (340)
Q Consensus 151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~ 230 (340)
+++++|+++||+++++.+...++ ++..++++++|+||+|+|+..++..++++|+++++|+|++++.|+.|++.+..
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~--- 154 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL--- 154 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec---
Confidence 99999999999999999988887 44677889999999999999999999999999999999999999999986421
Q ss_pred CCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc
Q 019513 231 GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR 295 (340)
Q Consensus 231 ~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~ 295 (340)
++|+++++|+++|+|++|+++|.++++. +++.||..+..
T Consensus 155 -------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~-~~~~~d~~~~~ 193 (197)
T cd01492 155 -------------------------LAPVAAVVGGILAQDVINALSKRESPLN-NFFVFDGETSE 193 (197)
T ss_pred -------------------------cccHHHHHHHHHHHHHHHHHhCCCCccC-cEEEEECCCCc
Confidence 8899999999999999999999999885 49999998753
No 18
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=3.2e-44 Score=322.47 Aligned_cols=189 Identities=26% Similarity=0.406 Sum_probs=177.8
Q ss_pred hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC--CccCcccHH
Q 019513 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE--PYIGQSKVK 150 (340)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~--~diG~~Ka~ 150 (340)
+|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||+++++ +|+|++|++
T Consensus 1 ~y~Rqi~l--~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~ 78 (198)
T cd01485 1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAA 78 (198)
T ss_pred Cccceeec--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHH
Confidence 69999999 99999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHhhCCCceEEEecccCC--cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeC
Q 019513 151 SAAATCRSINSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 228 (340)
Q Consensus 151 ~a~~~L~~lnp~v~i~~~~~~~~--~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~ 228 (340)
+++++|+++||+++|+++...++ .++..++++++|+||+|+|+...+..+|++|+++++|+|++++.|+.|++.+..
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~- 157 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF- 157 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch-
Confidence 99999999999999999988775 566778899999999999999999999999999999999999999999986521
Q ss_pred CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCC
Q 019513 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSA 294 (340)
Q Consensus 229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~ 294 (340)
|+++++|+++|.|++|+++|.++++ ++++.||....
T Consensus 158 -----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~-~~~~~~d~~~~ 193 (198)
T cd01485 158 -----------------------------PIAAFLGGVVAQEAIKSISGKFTPL-NNLYIYDGFES 193 (198)
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHhCCCCcc-CcEEEEECccc
Confidence 8899999999999999999998887 77999998764
No 19
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.3e-42 Score=325.31 Aligned_cols=215 Identities=27% Similarity=0.460 Sum_probs=188.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||||+++|||++||++++++|+++||+++|+++...+.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988885
Q ss_pred ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc--------CCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCcc
Q 019513 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL--------GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA 246 (340)
Q Consensus 175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~--------~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~ 246 (340)
. ..++++++|+||+|+|+.++|.+||+.|... ++|+|++++.|+.|++.++.|+.++||+|.+...|+...
T Consensus 81 ~-~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~ 159 (291)
T cd01488 81 K-DEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVT 159 (291)
T ss_pred h-hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCC
Confidence 4 4688999999999999999999999988664 499999999999999999999999999999876544433
Q ss_pred ccccc------------C-------------------------------------------------------CCccccH
Q 019513 247 CQRCA------------D-------------------------------------------------------SGVLGVV 259 (340)
Q Consensus 247 ~~~c~------------~-------------------------------------------------------~g~~gpv 259 (340)
.+.|. . -++++.+
T Consensus 160 ~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~st 239 (291)
T cd01488 160 FPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVAST 239 (291)
T ss_pred CCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCch
Confidence 32221 0 1346788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccC
Q 019513 260 PGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACG 312 (340)
Q Consensus 260 ~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg 312 (340)
++++|++++.|++|++++..+.+.| +++|++..+. ..++++. |+|+|++||
T Consensus 240 naiia~~~~~~~~k~~~~~~~~~~n-~~~~~g~~g~~~~~~~~~-~~~~c~~c~ 291 (291)
T cd01488 240 NAIIAAACCLEALKIATDCYENLNN-YLMYNGVDGCYTYTFEHE-RKEDCPVCS 291 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCc-eEEEecCCceEEEEEEEe-eCCCCCCCC
Confidence 8999999999999999998887654 7889998886 4455555 999999997
No 20
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=3.6e-41 Score=316.68 Aligned_cols=211 Identities=26% Similarity=0.401 Sum_probs=185.3
Q ss_pred hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH
Q 019513 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA 152 (340)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a 152 (340)
.||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+.+||+|||+++++|||++|++++
T Consensus 1 lYsRQl~~--~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~ 78 (286)
T cd01491 1 LYSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78 (286)
T ss_pred Ccccceec--cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHH
Confidence 49999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCC
Q 019513 153 AATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 232 (340)
Q Consensus 153 ~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~p 232 (340)
+++|+++||+++|+++...++ .+++.++|+||+|.|++..+..||++|+++++|+|.+.+.|+.|++++ .-++
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~---dfg~ 151 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPLT----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC---DFGD 151 (286)
T ss_pred HHHHHHHCCCCEEEEEeccCC----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe---cCCC
Confidence 999999999999999987654 357789999999999999999999999999999999999999999877 4468
Q ss_pred ceeecCCCCCCCcccc------------ccc-------------------------------------------------
Q 019513 233 CYRCLFPTPPPTTACQ------------RCA------------------------------------------------- 251 (340)
Q Consensus 233 C~~C~~~~~~~~~~~~------------~c~------------------------------------------------- 251 (340)
||.|..+...++.+.. .|.
T Consensus 152 ~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~ 231 (286)
T cd01491 152 EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFS 231 (286)
T ss_pred eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcC
Confidence 9999865432221110 010
Q ss_pred ---CCCc-----cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCC
Q 019513 252 ---DSGV-----LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALS 293 (340)
Q Consensus 252 ---~~g~-----~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~ 293 (340)
.+|. +.|+.+++|+++|+|+||.+++...|+. .++.||...
T Consensus 232 ~y~~gG~~~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~-q~~~~~~~~ 280 (286)
T cd01491 232 EYIRGGIVTQVKLSPMAAFFGGLAAQEVLKACSGKFTPLK-QWLYFDALE 280 (286)
T ss_pred ccccCcEEEEEecccHHHHhhhHHHHHHHHHcCCCCCcee-eEEEecHHH
Confidence 0121 6799999999999999999999999986 588888753
No 21
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=5.4e-40 Score=297.87 Aligned_cols=193 Identities=27% Similarity=0.324 Sum_probs=171.6
Q ss_pred CCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513 81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (340)
Q Consensus 81 ~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln 160 (340)
+.||.++|++|++++|+|||+||+|++++++|+++||++|+|+|+|.|+.+||+||+++ ++|+|++|+++++++|+++|
T Consensus 16 ~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 16 SRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHC
Confidence 34999999999999999999999999999999999999999999999999999999876 67999999999999999999
Q ss_pred CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEeecCceeEEEEEeCCC--CCceeec
Q 019513 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCL 237 (340)
Q Consensus 161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~i~v~~~~~--~pC~~C~ 237 (340)
|+++++.++..+++++..++++++|+||+|+|++.+|..+++.|.++ ++|+|+++..+..|+...+.+.. .+||.|
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV- 173 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC-
Confidence 99999999999998888889999999999999999999999999998 99999998888888776555432 344432
Q ss_pred CCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCC
Q 019513 238 FPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE 280 (340)
Q Consensus 238 ~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~ 280 (340)
+..+ ...|...|+++|+++++|+++|.|++|+++|.+.
T Consensus 174 -~~~~----~~~~~~~gv~~~~~~~i~~~~a~ealk~l~~~~~ 211 (212)
T PRK08644 174 -GDFV----TEAKPGNPLMAPRVNIAAAHQANLVLRLILGEEV 211 (212)
T ss_pred -CCCC----cccCCCCCccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 2221 2357889999999999999999999999998653
No 22
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=1e-39 Score=330.25 Aligned_cols=235 Identities=22% Similarity=0.328 Sum_probs=190.9
Q ss_pred hhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc---CcccH
Q 019513 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKV 149 (340)
Q Consensus 73 ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di---G~~Ka 149 (340)
++-|-.++|++|. ++|++++|+|||+|||||++|++|+++|||+|+|||+|.|+.|||+||++|+.+|+ |++||
T Consensus 321 kLmkWRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA 397 (664)
T TIGR01381 321 KLMKWRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKA 397 (664)
T ss_pred HHHhhhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHH
Confidence 4444455666665 89999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCceEEEecccC-------Cc----------ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513 150 KSAAATCRSINSTVHIIEHREAL-------RT----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (340)
Q Consensus 150 ~~a~~~L~~lnp~v~i~~~~~~~-------~~----------~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i 212 (340)
++|+++|+++||+++++.+...+ ++ +++.++++++|+|++|+|++++|++++.+|..+++|+|
T Consensus 398 ~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 398 ETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred HHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999988773 33 35678899999999999999999999999999999999
Q ss_pred EEeecCceeEEEEEeC------------------CCCCceeec---CCCCCCCc--ccccccCCCccccHHHHHHHHHHH
Q 019513 213 SGAALGLEGQLTVYNY------------------NGGPCYRCL---FPTPPPTT--ACQRCADSGVLGVVPGIIGCLQAL 269 (340)
Q Consensus 213 ~~~~~g~~G~i~v~~~------------------~~~pC~~C~---~~~~~~~~--~~~~c~~~g~~gpv~~i~g~l~A~ 269 (340)
++ +.|++|++.+.+. ...+||.|. +|..+... --+.|. |++|..+++|+++|.
T Consensus 478 ~a-AlGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCt---VtrPgv~~ias~~Av 553 (664)
T TIGR01381 478 SA-ALGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCT---VTRPGTAMIASGLAV 553 (664)
T ss_pred EE-EeccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccce---EecchHHHHHHHHHH
Confidence 98 5899999988631 258899999 55443322 114677 999999999999999
Q ss_pred HHHHHHhcCCCCCC----C----eEE-----EEEcCCCcEEEEEec-CCCCCCCccCCC
Q 019513 270 EAIKVASAVGEPLS----G----RML-----LFDALSARIRIVKIR-GRSSQCEACGEN 314 (340)
Q Consensus 270 eaik~l~g~~~~~~----~----~~~-----~fd~~~~~~~~~~l~-~~~~~C~~Cg~~ 314 (340)
|+++.++.++.... . ..+ .+-+.-..|..+.+. .+.+.|.+|++.
T Consensus 554 Ell~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~ 612 (664)
T TIGR01381 554 ELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDA 612 (664)
T ss_pred HHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHH
Confidence 99999998752110 0 000 111222345555554 467899999984
No 23
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=339.30 Aligned_cols=227 Identities=23% Similarity=0.318 Sum_probs=199.9
Q ss_pred hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (340)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~ 151 (340)
.||+||+.+ ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+|||||++++.+|||++|+++
T Consensus 313 ~ry~Rqi~l--ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 313 IAFSRNLGL--VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHhhchHhh--cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence 689999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC
Q 019513 152 AAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 229 (340)
Q Consensus 152 a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~ 229 (340)
++++|+++||.++|++++..+++++..++++++|+||||+|++. .+..+++.|+++++|+|+++..|+.|++.++.|+
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~ 470 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG 470 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence 99999999999999999999999999999999999999999854 5677888899999999999999999999998765
Q ss_pred CCCceeecCCCCCCCccc-------------------c-------cccCCCccccHHHHHHHHHHHHHHHHHhcCCCCC-
Q 019513 230 GGPCYRCLFPTPPPTTAC-------------------Q-------RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL- 282 (340)
Q Consensus 230 ~~pC~~C~~~~~~~~~~~-------------------~-------~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~- 282 (340)
++||+|+|+..+..... . .-...+.++..+.+.|+++|.|++|+++|.++..
T Consensus 471 -~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~ 549 (989)
T PRK14852 471 -GMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRP 549 (989)
T ss_pred -CCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcccc
Confidence 59999999875431100 0 0123456667778899999999999999997653
Q ss_pred CCeEEEEEcCCCcEEEEEe
Q 019513 283 SGRMLLFDALSARIRIVKI 301 (340)
Q Consensus 283 ~~~~~~fd~~~~~~~~~~l 301 (340)
....+.||++++.+.+-.+
T Consensus 550 ~p~~~qfd~~~~~~~~~~~ 568 (989)
T PRK14852 550 VPYFRQFDPLTGRHVRGRL 568 (989)
T ss_pred Ccchhccchhhcccceeee
Confidence 3568889999987766554
No 24
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=5e-39 Score=333.00 Aligned_cols=235 Identities=21% Similarity=0.305 Sum_probs=205.2
Q ss_pred CCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc
Q 019513 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI 144 (340)
Q Consensus 65 ~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di 144 (340)
.....+.+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+++|||||++++.+||
T Consensus 17 ~~~~~~~~ry~R~~~l--~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv 94 (679)
T PRK14851 17 SAAEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF 94 (679)
T ss_pred CHHHHHHHHhhhhHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC
Confidence 3455667999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513 145 GQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 145 G~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
|++|+++++++|+++||.++|++++..+++++..++++++|+||||+|++ .+|.+|++.|+++++|+|+++..|+.|+
T Consensus 95 G~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~ 174 (679)
T PRK14851 95 GRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSA 174 (679)
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccce
Confidence 99999999999999999999999999999999999999999999999974 5789999999999999999999999999
Q ss_pred EEEEeCCCCCceeecCCCCCCCcc-------------------------c-ccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513 223 LTVYNYNGGPCYRCLFPTPPPTTA-------------------------C-QRCADSGVLGVVPGIIGCLQALEAIKVAS 276 (340)
Q Consensus 223 i~v~~~~~~pC~~C~~~~~~~~~~-------------------------~-~~c~~~g~~gpv~~i~g~l~A~eaik~l~ 276 (340)
+.++.|+ ++||.|+|...+.... + .+-..+..+...+-..+++.+.|++|++.
T Consensus 175 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (679)
T PRK14851 175 MLVFTPQ-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIIL 253 (679)
T ss_pred EEEEcCC-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhh
Confidence 9998876 8999999976443110 0 01223445666677899999999999999
Q ss_pred cCCCCC-CCeEEEEEcCCCcEEEEEec
Q 019513 277 AVGEPL-SGRMLLFDALSARIRIVKIR 302 (340)
Q Consensus 277 g~~~~~-~~~~~~fd~~~~~~~~~~l~ 302 (340)
+..... .+.++.||++.+.+....++
T Consensus 254 ~~~~~~~~p~~~~~d~~~~~~~~~~~~ 280 (679)
T PRK14851 254 GKGGLRPVPCYLQFDPFLQKLRKGRLS 280 (679)
T ss_pred cCCeeeccchhhhcchhhcceeEEEee
Confidence 987642 35678899988877665553
No 25
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=321.02 Aligned_cols=216 Identities=20% Similarity=0.206 Sum_probs=183.5
Q ss_pred CCCHHHH--hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCC
Q 019513 65 GLSPDMI--YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTE 141 (340)
Q Consensus 65 ~l~~~e~--~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~ 141 (340)
-|.++++ +||+||+.+ ||.++|++|++++|+|||+| +||.+|.+|+++|| |+|+|+|+|.||.|||||| +++.
T Consensus 79 ~~~~~~~~~~r~~Rn~~~--ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~ 154 (722)
T PRK07877 79 LLGPREFRAVRLDRNRNK--ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGV 154 (722)
T ss_pred cCCHHHhhHHHhhchhhh--CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCCh
Confidence 4888998 899999999 99999999999999999997 99999999999996 9999999999999999998 5888
Q ss_pred CccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513 142 PYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
.|+|++|+++++++|+++||+++|+++...++++|..++++++|+||||+|++.+|++||++|+++++|||+++..+ |
T Consensus 155 ~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g 232 (722)
T PRK07877 155 FDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--G 232 (722)
T ss_pred hhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988655 7
Q ss_pred EEE--EE-eCCCCCceeecCCCCCCCcc--------cc-----------------cc-------cCCCccccHHHHHHHH
Q 019513 222 QLT--VY-NYNGGPCYRCLFPTPPPTTA--------CQ-----------------RC-------ADSGVLGVVPGIIGCL 266 (340)
Q Consensus 222 ~i~--v~-~~~~~pC~~C~~~~~~~~~~--------~~-----------------~c-------~~~g~~gpv~~i~g~l 266 (340)
++. .+ ..+.+|||+|+++..+.... .+ ++ ...+.++.-+.+.|++
T Consensus 233 ~~~~e~~~~~p~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~ 312 (722)
T PRK07877 233 LLDVERFDLEPDRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAA 312 (722)
T ss_pred CcCcceeeeCCCCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHH
Confidence 764 22 23579999999987542111 00 00 1123455556678888
Q ss_pred HHHHHHHHHhcCCCCCCCeEE
Q 019513 267 QALEAIKVASAVGEPLSGRML 287 (340)
Q Consensus 267 ~A~eaik~l~g~~~~~~~~~~ 287 (340)
.+..+.|+++|..-+ +||++
T Consensus 313 ~~~~~~~i~l~~~~~-sgr~~ 332 (722)
T PRK07877 313 VAEAVRRIGLGEPLE-SGRVR 332 (722)
T ss_pred HHHHHHHHHcCCcCC-CCCEE
Confidence 888888999887543 45444
No 26
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.9e-37 Score=292.67 Aligned_cols=145 Identities=30% Similarity=0.575 Sum_probs=138.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+++++|||++|+++++++|+++||+++|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c-cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCC
Q 019513 175 S-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239 (340)
Q Consensus 175 ~-~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~ 239 (340)
. ...++++++|+||+|.|+.++|.++|++|+.+++|+|.+++.|+.|++.++.|+.++||.|...
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~ 146 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK 146 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC
Confidence 3 3568899999999999999999999999999999999999999999999999999999999754
No 27
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=1.3e-36 Score=283.47 Aligned_cols=213 Identities=25% Similarity=0.347 Sum_probs=178.8
Q ss_pred CCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc
Q 019513 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY 143 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d 143 (340)
..||.++.+||+||.++ ||.++|++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||+++..++
T Consensus 3 ~~~~~~~~~rf~R~~~L--~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~ 80 (268)
T PRK15116 3 VVISDAWRQRFGGTARL--YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDN 80 (268)
T ss_pred CCCCHHHHHHHhhHHHH--hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhh
Confidence 35899899999999999 9999999999999999999999999999999999999999999999999999999998899
Q ss_pred cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce--
Q 019513 144 IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE-- 220 (340)
Q Consensus 144 iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~-- 220 (340)
+|++|++++++++.++||+++|..+...+++++..+++. +||+||+|+|++.++..|+++|+++++|+|+++..|..
T Consensus 81 vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 81 VGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred cChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999999988888888777774 79999999999999999999999999999987544332
Q ss_pred -eEEEEEe-------C----------C-CC--------CceeecCCCCCCCcc-----------------ccccc-CCCc
Q 019513 221 -GQLTVYN-------Y----------N-GG--------PCYRCLFPTPPPTTA-----------------CQRCA-DSGV 255 (340)
Q Consensus 221 -G~i~v~~-------~----------~-~~--------pC~~C~~~~~~~~~~-----------------~~~c~-~~g~ 255 (340)
..+.+-. | . .+ .-+.|.|...++... ..+|. ..|+
T Consensus 161 p~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gs 240 (268)
T PRK15116 161 PTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGA 240 (268)
T ss_pred CCeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCcccccccccccccccccccCCCCCCc
Confidence 1232211 0 1 01 125677755432110 01343 4588
Q ss_pred cccHHHHHHHHHHHHHHHHHhcC
Q 019513 256 LGVVPGIIGCLQALEAIKVASAV 278 (340)
Q Consensus 256 ~gpv~~i~g~l~A~eaik~l~g~ 278 (340)
+..||+++|.++|.++|+.|++.
T Consensus 241 ~~~v~~~~G~~~a~~vi~~l~~~ 263 (268)
T PRK15116 241 ATMVTATFGFVAVSHALKKMMAK 263 (268)
T ss_pred ceehhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 28
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.8e-36 Score=278.07 Aligned_cols=145 Identities=26% Similarity=0.473 Sum_probs=138.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
||+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||+||+++|+|++|+++++++++++||++++.++...+++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred cc--HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCC
Q 019513 175 SN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 239 (340)
Q Consensus 175 ~~--~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~ 239 (340)
++ ..++++++|+||+|+|+.++|.++|++|+.+++|+|++++.|+.|++.++.|+.++||+|.++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~ 147 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLY 147 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCC
Confidence 32 357889999999999999999999999999999999999999999999999999999999983
No 29
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=278.70 Aligned_cols=229 Identities=27% Similarity=0.474 Sum_probs=193.1
Q ss_pred CHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513 84 GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163 (340)
Q Consensus 84 G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v 163 (340)
+.+..+.|.+.+|+|+|+||+||+++|+|+.+|++.+.+||.|+++.+||||||+|+++|+|++|+++|++.+.+..|.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH---cC-------CcEEEEeecCceeEEEEEeCCCCCc
Q 019513 164 HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV---LG-------KPLVSGAALGLEGQLTVYNYNGGPC 233 (340)
Q Consensus 164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~---~~-------~p~i~~~~~g~~G~i~v~~~~~~pC 233 (340)
.|.++..++.+. ..+++++||+||+..|+.++|.+||....+ .| +|+|++++.|+.|++.++.|+.+.|
T Consensus 111 ~v~~h~~kIqd~-~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 111 VVVPHRQKIQDK-PISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred EEeeeecchhcC-CHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 999999888754 367889999999999999999999976544 23 6999999999999999999999999
Q ss_pred eeecCCCCCCCcccccccC-------------------------------------------------------------
Q 019513 234 YRCLFPTPPPTTACQRCAD------------------------------------------------------------- 252 (340)
Q Consensus 234 ~~C~~~~~~~~~~~~~c~~------------------------------------------------------------- 252 (340)
+.|.....|+..+.+-|.-
T Consensus 190 ieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lv 269 (422)
T KOG2015|consen 190 IECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLV 269 (422)
T ss_pred HHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhh
Confidence 9997654443333222210
Q ss_pred CCc-------cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCc-EEEEEecCCCCCCCccCCCC
Q 019513 253 SGV-------LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS 315 (340)
Q Consensus 253 ~g~-------~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~-~~~~~l~~~~~~C~~Cg~~~ 315 (340)
.|+ .....+++++..|.||+|+++....+..| ++.|+...+- ..++.+. |+++|++||-.+
T Consensus 270 tGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~N-ym~~n~~eG~ytytf~~e-r~~nC~vCS~~~ 338 (422)
T KOG2015|consen 270 TGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDN-YMNYNAEEGIYTYTFLLE-RDKNCPVCSNLV 338 (422)
T ss_pred hhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhh-heeeecccceeEEEeeec-cCCCCccccCCC
Confidence 011 12234689999999999999999888655 7888988887 4556665 999999999844
No 30
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=7.3e-36 Score=263.06 Aligned_cols=171 Identities=29% Similarity=0.373 Sum_probs=155.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+||+||+++ .+++|++|+++++++|+++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 5799999999999999999999999999999998
Q ss_pred ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEeecCceeEEEEEeCCC--CCceeecCCCCCCCccccccc
Q 019513 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCLFPTPPPTTACQRCA 251 (340)
Q Consensus 175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~i~v~~~~~--~pC~~C~~~~~~~~~~~~~c~ 251 (340)
++..++++++|+||+|+|++.+|..+++.|.+. ++|||+++..++.|++..+.++. .+||+|.- ..+ ..|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~ 153 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICGD-LVN-----EAKE 153 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEeec-CCC-----CCCC
Confidence 888899999999999999999999888887776 99999999999999998877654 57999982 111 2377
Q ss_pred CCCccccHHHHHHHHHHHHHH
Q 019513 252 DSGVLGVVPGIIGCLQALEAI 272 (340)
Q Consensus 252 ~~g~~gpv~~i~g~l~A~eai 272 (340)
..|++||+++++|+++|.|++
T Consensus 154 ~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 154 GLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred CcCccccHHHHHHHHHHHhhC
Confidence 899999999999999999985
No 31
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=1.1e-35 Score=267.42 Aligned_cols=186 Identities=25% Similarity=0.322 Sum_probs=158.3
Q ss_pred CCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513 81 PSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (340)
Q Consensus 81 ~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln 160 (340)
..+|.+.|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+||++ ..+++|++|++++++.|+++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence 3489999999999999999999999999999999999999999999999999999974 567999999999999999999
Q ss_pred CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH-HcC-CcEEEEeecCceeEE--EEEeC--CCCCce
Q 019513 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV-VLG-KPLVSGAALGLEGQL--TVYNY--NGGPCY 234 (340)
Q Consensus 161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~-~~~-~p~i~~~~~g~~G~i--~v~~~--~~~pC~ 234 (340)
|.+++.++...+++++..++++++|+||+|+|++++|..+++.+. .++ .+++++ .|+.|+. ..+.+ ...+||
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~ 165 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFY 165 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEE
Confidence 999999999999999988999999999999999999988665554 444 455664 4555544 33322 345788
Q ss_pred eecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHH
Q 019513 235 RCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 275 (340)
Q Consensus 235 ~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l 275 (340)
.|.. .+ ...|...|+++|+++++|++||+|++|++
T Consensus 166 ~~~~--~~----~~~~~~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 166 LCGD--GK----SDAKQGLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred EcCC--CC----CcccCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 8822 21 12678899999999999999999999974
No 32
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-35 Score=271.06 Aligned_cols=243 Identities=26% Similarity=0.412 Sum_probs=207.2
Q ss_pred CCCCCCCHHHH--hhhhhhccCCCCC-HHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcccc
Q 019513 61 AVDYGLSPDMI--YRYSRHLLLPSFG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV 137 (340)
Q Consensus 61 ~~~~~l~~~e~--~ry~Rq~~l~~~G-~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~ 137 (340)
.+...||.+.. +.|||-|.|.++| ....++|+...|+|||.||+||-+|.+|.|+|||++.|+|+|.|+..|+||.|
T Consensus 47 ~kieklSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF 126 (422)
T KOG2336|consen 47 SKIEKLSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF 126 (422)
T ss_pred HHHHHhhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc
Confidence 34567888876 7999999999999 57899999999999999999999999999999999999999999999999987
Q ss_pred ccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc-ccHHhhc-----------ccCcEEEEcCCChhhHHHHHHHHH
Q 019513 138 IHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT-SNALEIL-----------SQYEIVVDATDNAPSRYMISDCCV 205 (340)
Q Consensus 138 l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~-~~~~~~l-----------~~~DlVi~~tD~~~~r~~i~~~~~ 205 (340)
|..+..|..|++++...|..+||+|.++.|+..++. ++...|. +..|+|+.|.||+++|..+|.+|.
T Consensus 127 -f~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN 205 (422)
T KOG2336|consen 127 -FQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN 205 (422)
T ss_pred -cCcccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH
Confidence 556799999999999999999999999999999886 4433332 458999999999999999999999
Q ss_pred HcCCcEEEEeec--CceeEEEEEeCCCCCceeecCCCCCCCc--c-----cccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513 206 VLGKPLVSGAAL--GLEGQLTVYNYNGGPCYRCLFPTPPPTT--A-----CQRCADSGVLGVVPGIIGCLQALEAIKVAS 276 (340)
Q Consensus 206 ~~~~p~i~~~~~--g~~G~i~v~~~~~~pC~~C~~~~~~~~~--~-----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~ 276 (340)
+.+..|+..++. ...|+|..+.|+.++||.|.-|..-... . ..-|+ .+++..-|+++++.++.++|+|+
T Consensus 206 E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTLKReGVCA--ASLPTTMgvvAG~LVqN~LK~LL 283 (422)
T KOG2336|consen 206 ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVVASGIDERTLKREGVCA--ASLPTTMGVVAGFLVQNSLKFLL 283 (422)
T ss_pred HhhhHHHHccCccccccceeEEecCCccceecccCceeeecCcchhhhhhcceee--ecCcchHHHHHHHHHHHHHHHHh
Confidence 999999875553 5689999999999999999844221100 0 01222 35677789999999999999999
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEecCCCCCCC
Q 019513 277 AVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 309 (340)
Q Consensus 277 g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C~ 309 (340)
..++.. .++.|++....|.++.++ ++|+|.
T Consensus 284 NFGeVS--~YlGYNal~DFFP~msmk-PNPqCd 313 (422)
T KOG2336|consen 284 NFGEVS--PYLGYNALSDFFPTMSMK-PNPQCD 313 (422)
T ss_pred hccccc--hhhcchhHHhhCccccCC-CCCCCC
Confidence 998863 378899999999999998 899985
No 33
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=2e-34 Score=264.15 Aligned_cols=190 Identities=30% Similarity=0.426 Sum_probs=160.7
Q ss_pred CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513 83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST 162 (340)
Q Consensus 83 ~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~ 162 (340)
||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||+++..+++|++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce---eEEEEEeC----------
Q 019513 163 VHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQLTVYNY---------- 228 (340)
Q Consensus 163 v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~i~v~~~---------- 228 (340)
++|+.+...+++++..+++. ++|+||+|+|+...+..|+++|+++++|+|++...|.. .++.+-.-
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999999888877774 69999999999999999999999999999997665543 34443221
Q ss_pred ---------CCCCceeecCCCCCCCc------------------ccccccCCCccccHHHHHHHHHHHHHH
Q 019513 229 ---------NGGPCYRCLFPTPPPTT------------------ACQRCADSGVLGVVPGIIGCLQALEAI 272 (340)
Q Consensus 229 ---------~~~pC~~C~~~~~~~~~------------------~~~~c~~~g~~gpv~~i~g~l~A~eai 272 (340)
+...-+.|.|...++.. ....|...|++++||+++|.++|.++|
T Consensus 161 ~~R~~Lrk~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRKRGIFFGVPVVYSTEPPDPPKADELVCGDEVGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHHcCCCCCeEEEeCCCCCCCCccccccccccccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 11112667775543211 112345678999999999999999875
No 34
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5e-35 Score=313.60 Aligned_cols=177 Identities=27% Similarity=0.449 Sum_probs=163.6
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccC
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG 145 (340)
..||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+.+|||
T Consensus 399 ~~RYdrqi~l--~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG 476 (1008)
T TIGR01408 399 GDRYDAQIAV--FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG 476 (1008)
T ss_pred hhhhHHHHHH--cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence 4899999999 99999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhCCCceEEEecccCCccc--H--HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513 146 QSKVKSAAATCRSINSTVHIIEHREALRTSN--A--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 146 ~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~--~--~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
++|+++|+++++++||+++|+++...+.+++ . .++++++|+||+|.|+..+|.++++.|+.+++|+|.+++.|+.|
T Consensus 477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G 556 (1008)
T TIGR01408 477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG 556 (1008)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence 9999999999999999999999999887542 2 46789999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCceeecCCCCCCCccccccc
Q 019513 222 QLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (340)
Q Consensus 222 ~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~ 251 (340)
++.++.|+.+.||.|.. . |+....+.|.
T Consensus 557 ~v~v~ip~~te~y~~~~-d-~~~~~~P~Ct 584 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSR-D-PPEKEIPFCT 584 (1008)
T ss_pred eEEEEeCCCcCCCCCCC-C-CCCCCCCccc
Confidence 99999999999999984 3 3334455554
No 35
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.9e-34 Score=309.23 Aligned_cols=150 Identities=24% Similarity=0.361 Sum_probs=143.9
Q ss_pred HHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccH
Q 019513 70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKV 149 (340)
Q Consensus 70 e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka 149 (340)
+.++|+||+++ ||.++|++|++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||||++++|||++|+
T Consensus 3 d~~lYsRQi~l--~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 3 DEALYSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred hHhhhhhHHHh--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 45799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcC--CcEEEEeecCceeEEEE
Q 019513 150 KSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVSGAALGLEGQLTV 225 (340)
Q Consensus 150 ~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~--~p~i~~~~~g~~G~i~v 225 (340)
++++++|+++||+|+|+++...++ .+++++||+||+|.++...+..||++|++++ +|+|++++.|+.|++++
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFN----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC 154 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCC----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe
Confidence 999999999999999999988776 3578999999999999999999999999999 89999999999999865
No 36
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=100.00 E-value=2e-34 Score=259.40 Aligned_cols=210 Identities=25% Similarity=0.363 Sum_probs=177.4
Q ss_pred HHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcc
Q 019513 68 PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS 147 (340)
Q Consensus 68 ~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~ 147 (340)
....+||+|..+| +|.++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|+.+|+|||......+||++
T Consensus 7 ~~~~~rf~~~~~l--~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 7 DAYRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHHHHhhhHHHH--cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccH
Confidence 4556899999999 99999999999999999999999999999999999999999999999999999999888999999
Q ss_pred cHHHHHHHHHhhCCCceEEEecccCCcccHHhhcc-cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCce---eEE
Q 019513 148 KVKSAAATCRSINSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQL 223 (340)
Q Consensus 148 Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~-~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~i 223 (340)
|+++++++++.+||+++|.+++..++++|..+++. +||+||||.|+..++..+-.+|+++++|+|+....|.. -++
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri 164 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI 164 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE
Confidence 99999999999999999999999999999999885 59999999999999999999999999999996544332 233
Q ss_pred EEEe---------------------CCCCCceeecCCCCCC--Cc-c--------------cccccC-CCccccHHHHHH
Q 019513 224 TVYN---------------------YNGGPCYRCLFPTPPP--TT-A--------------CQRCAD-SGVLGVVPGIIG 264 (340)
Q Consensus 224 ~v~~---------------------~~~~pC~~C~~~~~~~--~~-~--------------~~~c~~-~g~~gpv~~i~g 264 (340)
.+-. |+..--..|.|...++ |. . ...|.. .|+.++|++++|
T Consensus 165 ~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~~~~~~~c~~~~gs~~~Vta~fG 244 (263)
T COG1179 165 QVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAESAKRLDCARGLGSATFVTAVFG 244 (263)
T ss_pred EeeechhhccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCcccccccccchhhccchhhhhhcCCCcccccchHHH
Confidence 3321 1112224566654332 11 0 013655 789999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 019513 265 CLQALEAIKVASAVG 279 (340)
Q Consensus 265 ~l~A~eaik~l~g~~ 279 (340)
..+|.++++-+....
T Consensus 245 l~~as~vv~~i~~~~ 259 (263)
T COG1179 245 LVAASEVVKKILDKK 259 (263)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887653
No 37
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=3e-33 Score=262.29 Aligned_cols=217 Identities=22% Similarity=0.271 Sum_probs=166.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCc--cCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPY--IGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~d--iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+||+||+||..+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999887554
Q ss_pred -----------------CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC------
Q 019513 173 -----------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN------ 229 (340)
Q Consensus 173 -----------------~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~------ 229 (340)
+.++..++++++|+|++|+|+.++|++++.+|..+++|+|+ .+.|++|++.+.+.-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCCCccccc
Confidence 33457788999999999999999999999999999999998 578999999876521
Q ss_pred -------------CCCceeecCCCCCCCcc-----cccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCC----C---C
Q 019513 230 -------------GGPCYRCLFPTPPPTTA-----CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL----S---G 284 (340)
Q Consensus 230 -------------~~pC~~C~~~~~~~~~~-----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~----~---~ 284 (340)
.-+||.|.....|.... -+.|. +.-|-.+.+++-+|.|.+--++.++... . .
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqct---vtrpG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~ 236 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCT---VTRPGLSMIASSIAVELLVSLLQHPLGGHAPAESSSN 236 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccc---eecCchHHHHHHHHHHHHHHHHcCCCccCCCCccccc
Confidence 46799998654443211 12232 4445455566666777766666543110 0 0
Q ss_pred ------eEE-----EEEcCCCcEEEEEec-CCCCCCCccCCCC
Q 019513 285 ------RML-----LFDALSARIRIVKIR-GRSSQCEACGENS 315 (340)
Q Consensus 285 ------~~~-----~fd~~~~~~~~~~l~-~~~~~C~~Cg~~~ 315 (340)
..+ .+-++-..|..+++. ++.+.|.+|++.-
T Consensus 237 ~~~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v 279 (307)
T cd01486 237 EGDEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAV 279 (307)
T ss_pred cCCCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHH
Confidence 000 111222345555554 4678999999843
No 38
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=2.9e-33 Score=276.44 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=171.7
Q ss_pred hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (340)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~ 151 (340)
+|||||+++ ||.++|++|.+++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||||+..+|+|++||++
T Consensus 1 ~rYDRQlrL--wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~ 78 (425)
T cd01493 1 QKYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA 78 (425)
T ss_pred CcchHHHHH--hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHH
Confidence 489999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCC
Q 019513 152 AAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 229 (340)
Q Consensus 152 a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~ 229 (340)
+++.|+++||+++++.+...++. ++..++++++|+||++.++......++++|+++++|+|.+.+.|+.|++++..+
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEEC-
Confidence 99999999999999998877653 345688999999999999988888999999999999999999999999998775
Q ss_pred CCCceeecC---------CCCCCC--ccc----ccccCCCccccHHHHHHHHHHHHHHHHHhcC
Q 019513 230 GGPCYRCLF---------PTPPPT--TAC----QRCADSGVLGVVPGIIGCLQALEAIKVASAV 278 (340)
Q Consensus 230 ~~pC~~C~~---------~~~~~~--~~~----~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~ 278 (340)
...+..+-- ..|.|. ... ..-.+.-.++++|.++-.+.+++.+|--.+.
T Consensus 158 ~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g 221 (425)
T cd01493 158 EHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNG 221 (425)
T ss_pred CeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCC
Confidence 222332210 011110 000 0112334688999999999999999877653
No 39
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=273.02 Aligned_cols=152 Identities=30% Similarity=0.567 Sum_probs=145.9
Q ss_pred HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165 (340)
Q Consensus 86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i 165 (340)
+-+++++++|||||||||+||+++++|++.|+++|+|||-|+|+.|||||||||+.++||++||.+|++.++++||++++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCcc-cHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeec
Q 019513 166 IEHREALRTS-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCL 237 (340)
Q Consensus 166 ~~~~~~~~~~-~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~ 237 (340)
.+|...+.+. ...++++.||+|+.|.||.++|..+|+.|....+|+|.+++.|+.||++++.++.+-||.|.
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~ 157 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI 157 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence 9999998864 67888999999999999999999999999999999999999999999999999999999994
No 40
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.1e-32 Score=271.64 Aligned_cols=155 Identities=26% Similarity=0.452 Sum_probs=142.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 95 SILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
+|+|||+||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||++|+++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccH----HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCc
Q 019513 170 EALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 245 (340)
Q Consensus 170 ~~~~~~~~----~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~ 245 (340)
..+.+++. .++++++|+||+|.|++++|..+++.|+.+++|+|.+++.|+.|++.++.|+.++||+|... |+..
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~ 158 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEK 158 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCC
Confidence 88876433 46789999999999999999999999999999999999999999999999999999999843 3334
Q ss_pred cccccc
Q 019513 246 ACQRCA 251 (340)
Q Consensus 246 ~~~~c~ 251 (340)
..+.|.
T Consensus 159 ~~P~Ct 164 (435)
T cd01490 159 SIPLCT 164 (435)
T ss_pred CCCCcc
Confidence 455554
No 41
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=251.91 Aligned_cols=230 Identities=23% Similarity=0.353 Sum_probs=191.5
Q ss_pred CCCCCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCC
Q 019513 63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEP 142 (340)
Q Consensus 63 ~~~l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~ 142 (340)
.+.||.+|+.-|||||+| ||.++|++|+++||+|+|++|+|.+++++|+++||++++++|+-.|.+.+++-|||...+
T Consensus 3 ~~else~E~alYDRQIRL--WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~ 80 (331)
T KOG2014|consen 3 GEELSEQEIALYDRQIRL--WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS 80 (331)
T ss_pred hhhhhHHHHHHHHHHHHH--ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence 357999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513 143 YIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 143 diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
++|+.|+++..++++++||.|++......+...+ .++|.+||+||..--+.+.+..+|..|++++++|+.+...|+.|+
T Consensus 81 ~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy 159 (331)
T KOG2014|consen 81 SVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGY 159 (331)
T ss_pred hhchHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeee
Confidence 9999999999999999999999998888777543 789999999997766777888899999999999999999999999
Q ss_pred EEEEeC------C--C-------------------CCceeecCC--------CC--------------------------
Q 019513 223 LTVYNY------N--G-------------------GPCYRCLFP--------TP-------------------------- 241 (340)
Q Consensus 223 i~v~~~------~--~-------------------~pC~~C~~~--------~~-------------------------- 241 (340)
.++-.. . . .-|.-|+-| ..
T Consensus 160 ~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s 239 (331)
T KOG2014|consen 160 AFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTS 239 (331)
T ss_pred eeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHh
Confidence 865321 0 0 001111100 00
Q ss_pred --CCCccc-------------cccc---------------CCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEc
Q 019513 242 --PPTTAC-------------QRCA---------------DSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDA 291 (340)
Q Consensus 242 --~~~~~~-------------~~c~---------------~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~ 291 (340)
..+... ..|. -+..++|+++++|++.|+|+||.+++..+|+.| +++||+
T Consensus 240 ~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~N-ff~fdg 318 (331)
T KOG2014|consen 240 EGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNN-FFIFDG 318 (331)
T ss_pred cCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccc-eEEeec
Confidence 000000 0011 023578999999999999999999999999866 999999
Q ss_pred CCCcE
Q 019513 292 LSARI 296 (340)
Q Consensus 292 ~~~~~ 296 (340)
.++..
T Consensus 319 ~~g~g 323 (331)
T KOG2014|consen 319 ETGKG 323 (331)
T ss_pred ccCce
Confidence 99764
No 42
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=100.00 E-value=3.8e-32 Score=229.52 Aligned_cols=134 Identities=34% Similarity=0.607 Sum_probs=125.8
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
|++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||+++..+|+|++|+++++++|+++||++++.+++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEE
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v 225 (340)
++.++..++++++|+||+|+|+.+.+.+++++|+++++|+|+++..|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 988888899999999999999999999999999999999999999999999843
No 43
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=2e-30 Score=220.94 Aligned_cols=133 Identities=35% Similarity=0.617 Sum_probs=128.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||++++.+++|++|+++++++++++||+++++.++..+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEe
Q 019513 175 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN 227 (340)
Q Consensus 175 ~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~ 227 (340)
.+..++++++|+||+|+|+.+.+..++++|+++++|+|+++..|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 77778889999999999999999999999999999999999999999998875
No 44
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.96 E-value=2.9e-29 Score=231.00 Aligned_cols=206 Identities=20% Similarity=0.183 Sum_probs=163.3
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCC-----C-----cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGV-----G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGv-----g-----~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln 160 (340)
-+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|+++||+||+ |...|||++|+++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 477899999999999999999999973 4 9999999999999999995 5668999999999999999988
Q ss_pred CCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--c-CCcEEEEeecCceeEEEEE-----------
Q 019513 161 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--L-GKPLVSGAALGLEGQLTVY----------- 226 (340)
Q Consensus 161 p~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~-~~p~i~~~~~g~~G~i~v~----------- 226 (340)
.++++++...+.++ .++.++|+||+|+|+.++|..|++.|++ . ++||+.++..+..|++.+-
T Consensus 88 -~~~i~a~~~~~~~~---~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~ 163 (244)
T TIGR03736 88 -GTDWTAHPERVERS---STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENR 163 (244)
T ss_pred -CceEEEEEeeeCch---hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCc
Confidence 89999999888763 3456899999999999999999999988 3 4899999987777666443
Q ss_pred --eCCCCCceeecCCCCC-CCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCC--CCCCCeEEEEEcCCCcEEEEEe
Q 019513 227 --NYNGGPCYRCLFPTPP-PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVG--EPLSGRMLLFDALSARIRIVKI 301 (340)
Q Consensus 227 --~~~~~pC~~C~~~~~~-~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~--~~~~~~~~~fd~~~~~~~~~~l 301 (340)
.|..+.||.|.....+ +..+.++|+..-.+.+-.-++..++|+.+..+|-... ..+..+..+||+.++..+.+++
T Consensus 164 ~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~v 243 (244)
T TIGR03736 164 LRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLATGRTNPLPV 243 (244)
T ss_pred eecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCCCccccccC
Confidence 3455667777655422 4456789998888887666666666666665555432 2245678889998887766654
No 45
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.96 E-value=1.3e-29 Score=230.33 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=110.5
Q ss_pred CCHHHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccC
Q 019513 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIG 145 (340)
Q Consensus 66 l~~~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG 145 (340)
|+++|.+||+||+++ ||.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||+++++ ++|
T Consensus 1 ms~~E~~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvG 77 (287)
T PTZ00245 1 MRDAEAVRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAG 77 (287)
T ss_pred CCHHHHHHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccC
Confidence 678899999999999 99999999999999999999999999999999999999999999999999999999997 689
Q ss_pred cccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCC
Q 019513 146 QSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATD 192 (340)
Q Consensus 146 ~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD 192 (340)
++|+++++++|+++||+++|.+++..+++.+ +|++||.+.-
T Consensus 78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~~n------~fqvvV~~~~ 118 (287)
T PTZ00245 78 GTRGARALGALQRLNPHVSVYDAVTKLDGSS------GTRVTMAAVI 118 (287)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEcccccCCcC------CceEEEEEcc
Confidence 9999999999999999999999998887653 7888885543
No 46
>PRK06153 hypothetical protein; Provisional
Probab=99.95 E-value=8.1e-27 Score=225.27 Aligned_cols=149 Identities=25% Similarity=0.279 Sum_probs=127.7
Q ss_pred HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCcccc-ccCCCccCc--ccHHHHHHHHHhhCCC
Q 019513 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQV-IHTEPYIGQ--SKVKSAAATCRSINST 162 (340)
Q Consensus 86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~-l~~~~diG~--~Ka~~a~~~L~~lnp~ 162 (340)
.-|++|++++|+||||||+||.++.+|+++||++|+|||+|.|+++||+||+ +++.+|+|+ +|++++++++.++|+.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~ 248 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG 248 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence 5699999999999999999999999999999999999999999999999998 568899999 9999999999999984
Q ss_pred ceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCC
Q 019513 163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPP 242 (340)
Q Consensus 163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~ 242 (340)
|.++...+++++.. .+.++|+||+|+|+.++|.+|+++|.++++|||+++.. +.+.+-..+.|.||.+..|.
T Consensus 249 --I~~~~~~I~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~p~ 320 (393)
T PRK06153 249 --IVPHPEYIDEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLSTPD 320 (393)
T ss_pred --EEEEeecCCHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEecCC
Confidence 56777788776654 67899999999999999999999999999999997642 11111112458888775553
No 47
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-27 Score=219.35 Aligned_cols=221 Identities=27% Similarity=0.421 Sum_probs=174.5
Q ss_pred hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHH
Q 019513 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKS 151 (340)
Q Consensus 72 ~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~ 151 (340)
+...|+..+ ||.++|+||+++-|+||||||+||+++.+|+|+|+++|.|||+|.|+.|.||||....-+|||.||+.+
T Consensus 55 eqLarN~aF--fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c 132 (430)
T KOG2018|consen 55 EQLARNYAF--FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC 132 (430)
T ss_pred HHHHhHHhh--hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence 566788888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEecccCCcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCcee---EEEEEe
Q 019513 152 AAATCRSINSTVHIIEHREALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG---QLTVYN 227 (340)
Q Consensus 152 a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G---~i~v~~ 227 (340)
++++++++.|+++|.+.+.-++.++..+++ .+.|+|+||.||..++--+-++|+.+++++|+....+... .+.+-.
T Consensus 133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~D 212 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVAD 212 (430)
T ss_pred HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhh
Confidence 999999999999999999999998888877 5699999999999999999999999999999854433322 222111
Q ss_pred ---CCCCCceeec----------------C----CCC------CCCcc------c------c--cccCCCccccHHHHHH
Q 019513 228 ---YNGGPCYRCL----------------F----PTP------PPTTA------C------Q--RCADSGVLGVVPGIIG 264 (340)
Q Consensus 228 ---~~~~pC~~C~----------------~----~~~------~~~~~------~------~--~c~~~g~~gpv~~i~g 264 (340)
....|--||. | |.| |..+. + + .-.-.+++|++|+++|
T Consensus 213 is~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFG 292 (430)
T KOG2018|consen 213 ISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFG 292 (430)
T ss_pred ccccccCcHHHHHHHHHHHhccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHH
Confidence 1223333331 1 111 00000 0 0 1112578999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCC--CeEEEEEcCCC
Q 019513 265 CLQALEAIKVASAVG-EPLS--GRMLLFDALSA 294 (340)
Q Consensus 265 ~l~A~eaik~l~g~~-~~~~--~~~~~fd~~~~ 294 (340)
..+|.-++--+.+.+ +|.. +|+-.||..-.
T Consensus 293 ltiat~vlt~ia~~pmepi~~~nrlk~Yd~i~q 325 (430)
T KOG2018|consen 293 LTIATYVLTQIAQYPMEPIENKNRLKHYDLIHQ 325 (430)
T ss_pred HHHHHHHHHHHhcCCCCcccccchhHHHHHHHH
Confidence 999999999988775 3332 45556665443
No 48
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.94 E-value=7.6e-26 Score=227.64 Aligned_cols=231 Identities=15% Similarity=0.229 Sum_probs=181.8
Q ss_pred CCCCCHHHHhhhhhhccC-C---CCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccc
Q 019513 63 DYGLSPDMIYRYSRHLLL-P---SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVI 138 (340)
Q Consensus 63 ~~~l~~~e~~ry~Rq~~l-~---~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l 138 (340)
++.|++.+.+||..|+.+ . ..|....++.++++|+|+|.|++|+.++..|+++|+++|..||+|.+ .+|++|
T Consensus 95 p~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--- 170 (637)
T TIGR03693 95 PHELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--- 170 (637)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH---
Confidence 346999999999999975 2 23456677779999999999999999999999999999999999999 999999
Q ss_pred cCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEE---E
Q 019513 139 HTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLV---S 213 (340)
Q Consensus 139 ~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i---~ 213 (340)
||+. ++.+++ .||++.++.++. -..++..+.++++|+||..+|++. .-.++|+.|++.|+||| .
T Consensus 171 -----IgEl-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -----IHEL-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -----HHHH-HHHHHH----hCCCCceEeccC-CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776 666665 899999998876 335678889999999999999755 34569999999996555 4
Q ss_pred EeecCceeEEEEEeCCCCCceeecCCCCCCCcccccccCCCccccH-HHHHHHHHHHHHHHHHhcCCCC-CCCeEEEEEc
Q 019513 214 GAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVV-PGIIGCLQALEAIKVASAVGEP-LSGRMLLFDA 291 (340)
Q Consensus 214 ~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv-~~i~g~l~A~eaik~l~g~~~~-~~~~~~~fd~ 291 (340)
++..++.|.+ +.|+.++||.|.+........... .....++|. .++++.+++.|++|++++..+. ..++++.||.
T Consensus 240 ~G~~~liGPl--ftPgkTGCWeCa~~RL~e~~L~~~-~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDl 316 (637)
T TIGR03693 240 LKQVGLAGPV--FQQHGDECFEAAWHRLHESALHEE-NSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDL 316 (637)
T ss_pred cccceeecce--ECCCCCcHHHHHHHHHHHHhcCCC-CcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEc
Confidence 5556666764 348999999996622110000000 122444454 7899999999999999986443 5578999999
Q ss_pred CCCcEEEEEecCCCCCCCccCC
Q 019513 292 LSARIRIVKIRGRSSQCEACGE 313 (340)
Q Consensus 292 ~~~~~~~~~l~~~~~~C~~Cg~ 313 (340)
.+....++++. |+|+|+ |..
T Consensus 317 eTLE~~WH~vv-krPqC~-~~~ 336 (637)
T TIGR03693 317 ATLEGGWHAFI-KHPDAS-CEK 336 (637)
T ss_pred cccccccccCC-CCCCCC-CCC
Confidence 99988888887 899999 874
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.7e-26 Score=230.47 Aligned_cols=149 Identities=26% Similarity=0.397 Sum_probs=140.4
Q ss_pred HhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHH
Q 019513 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVK 150 (340)
Q Consensus 71 ~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~ 150 (340)
..-||||+.+ +|.+++++|..++|+|.|++|||.+|||||+++||+++||.|...+.+++|..||+++++|||+++++
T Consensus 17 E~LYSRQLYV--lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~ 94 (1013)
T KOG2012|consen 17 ESLYSRQLYV--LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE 94 (1013)
T ss_pred hhhhhhhhhh--ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence 3689999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEE
Q 019513 151 SAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 225 (340)
Q Consensus 151 ~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v 225 (340)
+..++|.++|+.|.|..+...++ .+++++|++||.+.-..+....|+++|+++++.+|.+.+.|+.|+++.
T Consensus 95 as~~~LaeLN~yV~V~v~t~~~~----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFC 165 (1013)
T KOG2012|consen 95 ASVEKLAELNNYVPVVVLTGPLT----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFC 165 (1013)
T ss_pred HHHHHHHHhhcceeeEEecCccc----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhc
Confidence 99999999999999999887776 568899999998777777888899999999999999999999888753
No 50
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-26 Score=234.09 Aligned_cols=183 Identities=27% Similarity=0.450 Sum_probs=161.7
Q ss_pred CCCHHHH----hhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCcc
Q 019513 65 GLSPDMI----YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR 135 (340)
Q Consensus 65 ~l~~~e~----~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~R 135 (340)
++++++. .|||-|+.+ ||..-|+||.+.++.+||+|++||+.+||++.+|| |.|++.|.|.+|.|||||
T Consensus 400 ~~~e~d~~prgsRYD~qiav--fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnR 477 (1013)
T KOG2012|consen 400 PPSEEDCQPRGSRYDGQIAV--FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNR 477 (1013)
T ss_pred CCCHHHcccccCccccchhh--hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccc
Confidence 4555554 499999999 99999999999999999999999999999999999 479999999999999999
Q ss_pred ccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCccc----HHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513 136 QVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL 211 (340)
Q Consensus 136 q~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~----~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~ 211 (340)
||||+..|||++|++.|++....+||+++|.++..++.++. ..+++.+.|+|..+.||..+|.++..-|+-+.+|+
T Consensus 478 QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPL 557 (1013)
T KOG2012|consen 478 QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPL 557 (1013)
T ss_pred eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccch
Confidence 99999999999999999999999999999999998876532 36788999999999999999999999999999999
Q ss_pred EEEeecCceeEEEEEeCCCCCceeecCCCCCCCccccccc
Q 019513 212 VSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 251 (340)
Q Consensus 212 i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c~ 251 (340)
+..+++|+.|...++.|.-+--|.-. ..||..+.+-|.
T Consensus 558 LESGTlGTKGntQVvvPhlTEsY~SS--~DPPEksiP~CT 595 (1013)
T KOG2012|consen 558 LESGTLGTKGNTQVVVPHLTESYGSS--RDPPEKSIPVCT 595 (1013)
T ss_pred hhccCcCCccceeEEecccccccccc--CCCcccCCceee
Confidence 99999999999999988777666322 233444444443
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.7e-24 Score=205.69 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.9
Q ss_pred HHHhhhhhhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCccc
Q 019513 69 DMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK 148 (340)
Q Consensus 69 ~e~~ry~Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K 148 (340)
+-.+|||||+++ ||..||..|..++|+++|||++||+++++|++.|||.|++||+..|+.++++.+|+...+++|++|
T Consensus 5 ~~~~kYDRQlRl--wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~Gksr 82 (523)
T KOG2016|consen 5 EPKTKYDRQLRL--WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSR 82 (523)
T ss_pred chhhHHHHHHHH--HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhH
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEecccCCc--ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513 149 VKSAAATCRSINSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 226 (340)
Q Consensus 149 a~~a~~~L~~lnp~v~i~~~~~~~~~--~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~ 226 (340)
|++..+.|+++||+|.-.......+. .+..+++..+++|+.+--+..+-..+.++|+.+++|++.+.++|+.|.+++.
T Consensus 83 A~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ 162 (523)
T KOG2016|consen 83 AEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRIS 162 (523)
T ss_pred HHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEE
Confidence 99999999999999987665554432 4557788999999966666666677999999999999999999999999886
Q ss_pred eC--------CCCCceeecCCCCCCCc--c----cccccCCCccccHHHHHHHHHHHHHHHHHh
Q 019513 227 NY--------NGGPCYRCLFPTPPPTT--A----CQRCADSGVLGVVPGIIGCLQALEAIKVAS 276 (340)
Q Consensus 227 ~~--------~~~pC~~C~~~~~~~~~--~----~~~c~~~g~~gpv~~i~g~l~A~eaik~l~ 276 (340)
.. ++.+-++-....|.|.. - ..+-.+...+.++|.++-.+-+++.+.--.
T Consensus 163 ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~ 226 (523)
T KOG2016|consen 163 IKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQH 226 (523)
T ss_pred eeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhh
Confidence 52 22333333333332211 0 112334556778888887777777665444
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.83 E-value=3.1e-20 Score=181.55 Aligned_cols=189 Identities=21% Similarity=0.261 Sum_probs=146.8
Q ss_pred HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCcc---CcccHHHHHHHHHhhCCCc
Q 019513 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYI---GQSKVKSAAATCRSINSTV 163 (340)
Q Consensus 87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~di---G~~Ka~~a~~~L~~lnp~v 163 (340)
..+++++.++++.|+|.+||.||++|...||++||+||+..|+.||-.||.||+-+|- |++||+.|+++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 3578999999999999999999999999999999999999999999999999988876 4999999999999999998
Q ss_pred eEEEecccCC-------c----------ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEE
Q 019513 164 HIIEHREALR-------T----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 226 (340)
Q Consensus 164 ~i~~~~~~~~-------~----------~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~ 226 (340)
+-..+...+. + +...++++++|+|+..+|+.+.|++-.-.|...++-+|++ ++|++.++..-
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVMR 492 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVMR 492 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEEe
Confidence 8666544331 1 1245678999999999999999999888888888877776 47888887553
Q ss_pred eC--------------------CCCCceeecCCCCCCCccc-----ccccCCCccccHHHHHHHHHHHHHHHHHhcCC
Q 019513 227 NY--------------------NGGPCYRCLFPTPPPTTAC-----QRCADSGVLGVVPGIIGCLQALEAIKVASAVG 279 (340)
Q Consensus 227 ~~--------------------~~~pC~~C~~~~~~~~~~~-----~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~ 279 (340)
+. ..-+||-|..-..|..... +.|. |.-|-.+++++-.|.|.+--++.++
T Consensus 493 HG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCT---VtRPG~a~IA~alAVELlvslLQhP 567 (669)
T KOG2337|consen 493 HGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCT---VTRPGVANIASALAVELLVSLLQHP 567 (669)
T ss_pred cCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheee---ccCCchhHHHHHHHHHHHHHHHhCc
Confidence 31 1346899976555443221 2343 4445556666666777666665544
No 53
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.81 E-value=3e-20 Score=144.59 Aligned_cols=83 Identities=49% Similarity=0.993 Sum_probs=60.8
Q ss_pred CCCCceeecCCCCCCCcccccccCCCccccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEecCCCCCC
Q 019513 229 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 308 (340)
Q Consensus 229 ~~~pC~~C~~~~~~~~~~~~~c~~~g~~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l~~~~~~C 308 (340)
+++|||||+||.. +...++|...|++||+++++|+++|+||||+|+|.++++.++++.||+.+.+|+.+++. |+|+|
T Consensus 1 g~~pC~rCl~p~~--~~~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~-k~~~C 77 (84)
T PF05237_consen 1 GKTPCYRCLFPEP--PESAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIK-KNPDC 77 (84)
T ss_dssp -T---HHHHHTTS--S--TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-----TT-
T ss_pred CCCceehhcCCCC--CccCCCccccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecC-CCccC
Confidence 4689999999988 55667999999999999999999999999999999999999999999999999999998 99999
Q ss_pred CccCCC
Q 019513 309 EACGEN 314 (340)
Q Consensus 309 ~~Cg~~ 314 (340)
++||++
T Consensus 78 ~~C~~~ 83 (84)
T PF05237_consen 78 PVCGPK 83 (84)
T ss_dssp TTT---
T ss_pred cCcCcC
Confidence 999974
No 54
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.73 E-value=2.7e-07 Score=79.19 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=120.8
Q ss_pred CCcEEEEcCChhHHHHHHHHH---HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 93 KSSILVIGAGGLGSPALLYLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La---~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
...|.++|||-+|--++..|. +.|..+|.++|+..|++.++-...+.. .+|.+|++-++ +|....+.-++++++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~Ga--~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLGA--KVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhCC--CcchhHHHHHH-HhCcCCCCceeeccc
Confidence 456999999999999999987 689999999999999999986554443 69999998875 455666788999999
Q ss_pred ccCCcccHHhhcccCcEEEEcC---CChhhHHHHHHHHHHcCCcEEEEe-ecCc-eeEEEEEe--CCCCCceeecCCCCC
Q 019513 170 EALRTSNALEILSQYEIVVDAT---DNAPSRYMISDCCVVLGKPLVSGA-ALGL-EGQLTVYN--YNGGPCYRCLFPTPP 242 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~t---D~~~~r~~i~~~~~~~~~p~i~~~-~~g~-~G~i~v~~--~~~~pC~~C~~~~~~ 242 (340)
..++.+|+..+.. |+|+.|. |+.+.-..|..+|++.|+..|+.. ++|. .-.+.+.. ..++|-.+-+....-
T Consensus 95 E~it~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg~ 172 (217)
T COG4015 95 ENITKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEGG 172 (217)
T ss_pred ccccccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcCC
Confidence 9999998776543 7777664 667777788889999999888743 2332 11233332 122333322222211
Q ss_pred CCc-cc---ccccCC-CccccHHHHHHHHHHHHHHHHHhc
Q 019513 243 PTT-AC---QRCADS-GVLGVVPGIIGCLQALEAIKVASA 277 (340)
Q Consensus 243 ~~~-~~---~~c~~~-g~~gpv~~i~g~l~A~eaik~l~g 277 (340)
+.. -+ .-..+. ++.+.+---++--+..|++|+|..
T Consensus 173 ~dHilVgTgk~IRD~ePitPyvLdrva~~mt~e~Lr~L~~ 212 (217)
T COG4015 173 PDHILVGTGKFIRDFEPITPYVLDRVAKRMTIECLRILWS 212 (217)
T ss_pred CceEEEecCccccCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 100 00 011121 223334445777888999998854
No 55
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.42 E-value=3.9e-06 Score=75.24 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=73.5
Q ss_pred CHHHHHcccCCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC
Q 019513 84 GVEGQSNLLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST 162 (340)
Q Consensus 84 G~~~q~~L~~~~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~ 162 (340)
+...+++|++++|.|+|.|+.|+. ++..|+.+|++.+. .+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~~--------------------- 136 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------SE--------------------- 136 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------CC---------------------
Confidence 457789999999999999999988 99999999988554 00
Q ss_pred ceEEEecccCCcccHHhhcccCcEEEEcCCChhhHH-HHHHHHHHcCCcEEEEeecCceeEEEE-EeCCCCCceeec
Q 019513 163 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRY-MISDCCVVLGKPLVSGAALGLEGQLTV-YNYNGGPCYRCL 237 (340)
Q Consensus 163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~-~i~~~~~~~~~p~i~~~~~g~~G~i~v-~~~~~~pC~~C~ 237 (340)
.+.++|+ +.|....+. .+|+.+...++||+.....|..+.+.. +.|+.++||+|+
T Consensus 137 -------------------a~l~vVl-~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 137 -------------------ADLTVVL-TDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred -------------------CCEEEEE-eCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 1244555 455545544 489999999999999887776666654 458999999995
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.24 E-value=4.7e-06 Score=79.08 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=62.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.++.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+...++.+.+...
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~- 183 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG- 183 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec-
Confidence 3667899999999999999999999999999999865 25889999998887776554332
Q ss_pred ccCCcccHHhhcccCcEEEEcCC
Q 019513 170 EALRTSNALEILSQYEIVVDATD 192 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD 192 (340)
++..+.+.++|+||+||-
T Consensus 184 -----~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 184 -----SDLAAALAAADGLVHATP 201 (284)
T ss_pred -----cchHhhhCCCCEEEECCc
Confidence 222345678999999974
No 57
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.23 E-value=7.9e-06 Score=80.33 Aligned_cols=98 Identities=24% Similarity=0.362 Sum_probs=72.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.+|+|+|+|++|+.+|..|++.|.++|+|.|... .|+ +++...... ++++...++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~----~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKC----ARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHH----HHHHhhccc-cceeEEeccc
Confidence 5799999999999999999999999999987421 122 222222111 4555555554
Q ss_pred c-ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 174 T-SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 174 ~-~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
. +...++++++|+||+|...+-.. .+-++|.+.|+++++.+.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSY 100 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEccc
Confidence 3 45678899999999998865554 677899999999998764
No 58
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.19 E-value=6.3e-06 Score=69.51 Aligned_cols=81 Identities=28% Similarity=0.366 Sum_probs=58.9
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|++++|+|+|+||.|..++.+|...|+++|+|++.+ ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 47899999999999999999999999999999998632 13566666666 33333332
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPS 196 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~ 196 (340)
.. ++..+.+.++|+||.||.....
T Consensus 65 ~~----~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 65 PL----EDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EG----GGHCHHHHTESEEEE-SSTTST
T ss_pred eH----HHHHHHHhhCCeEEEecCCCCc
Confidence 22 2233567889999999987543
No 59
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.00 E-value=7.2e-05 Score=67.52 Aligned_cols=92 Identities=10% Similarity=0.172 Sum_probs=64.5
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
-.|++++|+|||.|.+|...++.|...| .++++|+.+. ...+.+... .-.+...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~---------------------~~~l~~l~~----~~~i~~~ 59 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL---------------------TENLVKLVE----EGKIRWK 59 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC---------------------CHHHHHHHh----CCCEEEE
Confidence 3589999999999999999999999999 6899987531 011111111 1123333
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPL 211 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~ 211 (340)
...+. ...+.++|+||.||++.+.-..|...| +.++++
T Consensus 60 ~~~~~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lv 97 (202)
T PRK06718 60 QKEFE----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALF 97 (202)
T ss_pred ecCCC----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcE
Confidence 33233 234678999999999999988899999 456644
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.84 E-value=3.1e-05 Score=62.23 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=63.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.|++++|+|||.|.+|..-++.|..+| .+++++..+. +. . + ..+++ ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~----~---~~i~~--~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------S----E---GLIQL--IR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------H----H---TSCEE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------h----h---hHHHH--Hh
Confidence 578999999999999999999999999 6899988764 10 0 0 12222 22
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~ 214 (340)
..+ .+.+.++++|+.|+++......|.+.|++.++|+-.+
T Consensus 52 ~~~-----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 REF-----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hhH-----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 222 2347889999999999999999999999999976543
No 61
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.82 E-value=0.00028 Score=63.88 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=69.4
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.|++++|+|||.|.+|..-++.|...|. ++++|+++.- ..+. .+.+. -.+..+.
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~-~l~~~---~~i~~~~ 59 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELT-LLAEQ---GGITWLA 59 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHH-HHHHc---CCEEEEe
Confidence 4789999999999999999999999995 7999987531 0111 11111 1344444
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
..+. ...+.++++||.|||+.+....|...|+..++++-.
T Consensus 60 ~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 60 RCFD----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNV 99 (205)
T ss_pred CCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4444 234688999999999988888899999999997743
No 62
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.71 E-value=0.00015 Score=71.47 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=65.8
Q ss_pred EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 96 ILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 96 VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
|+|+|+|.+|+.++..|++.+-- ++++.|.+. .|++.+++.+ ....+.....++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999854 899988543 2333333333 23345555555553
Q ss_pred -ccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 175 -SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 175 -~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
+...++++++|+||+|...+ ....+-++|.+.|+++|+.+
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEESS
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeeccc
Confidence 44678899999999999866 66678899999999999943
No 63
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.68 E-value=0.00016 Score=68.58 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=56.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+. .|++.+++.+....+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence 5678999999999999999999999999999997542 37788887776544432222211
Q ss_pred cCCcccHHhhcccCcEEEEcCC
Q 019513 171 ALRTSNALEILSQYEIVVDATD 192 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD 192 (340)
.....+.+..+|+||+||-
T Consensus 185 ---~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 185 ---ARGIEDVIAAADGVVNATP 203 (283)
T ss_pred ---HhHHHHHHhhcCEEEEcCC
Confidence 1111223467999999985
No 64
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.67 E-value=0.00049 Score=59.62 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=62.8
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
+-.|++++|+|||.|.+|...++.|...|. ++++|+.+..+ .+.++ +. +..
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~ 58 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITW 58 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEE
Confidence 347899999999999999999999999995 68898755321 01111 11 222
Q ss_pred ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL 207 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~ 207 (340)
....+.+ ..+.++|+||.+||+.+....+...|++.
T Consensus 59 ~~~~~~~----~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 59 KQKTFSN----DDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred EecccCh----hcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2333332 23678999999999999988888888774
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.65 E-value=0.00022 Score=67.84 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=58.9
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+.+..+.+.+...+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d- 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD- 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence 56789999999999999999999999999999874310 1135666777776655554443332
Q ss_pred cCCc-ccHHhhcccCcEEEEcCC
Q 019513 171 ALRT-SNALEILSQYEIVVDATD 192 (340)
Q Consensus 171 ~~~~-~~~~~~l~~~DlVi~~tD 192 (340)
++. +...+.+..+|+||+||-
T Consensus 187 -~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 187 -LNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred -hhhhhHHHhhhccCCEEEEeCC
Confidence 221 233445677899998874
No 66
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.52 E-value=0.0014 Score=60.05 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=70.5
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
.-.+++.+|+|||.|.++..=+..|..+| .+|++|-++.-+ .+.++...-.+..
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~-------------------------el~~l~~~~~i~~ 73 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK-------------------------EFLDLKKYGNLKL 73 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH-------------------------HHHHHHhCCCEEE
Confidence 34677899999999999999999999999 569998665310 1111111222444
Q ss_pred ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~ 214 (340)
+...+.+ ..+.++++||.|||+...-..|...|...++++..+
T Consensus 74 ~~r~~~~----~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 74 IKGNYDK----EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EeCCCCh----HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 4444443 346789999999999999999999999999876654
No 67
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.44 E-value=0.00045 Score=65.47 Aligned_cols=78 Identities=26% Similarity=0.320 Sum_probs=54.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+||.|..++..|+..|+.+|+|++.+ ..|++.+++.+.... . +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceecc-
Confidence 567899999999999999999999999999998643 136777776654321 1 11111
Q ss_pred cCCcccHHhhcccCcEEEEcCCC
Q 019513 171 ALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
. .++....+..+|+||.||-.
T Consensus 180 -~-~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 180 -G-DSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred -c-hhhhhhcccCCCEEEECCCC
Confidence 0 01223445789999999864
No 68
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.40 E-value=0.00058 Score=67.33 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccCCCCCCccCCCCC------CCCCCCCCCCCHHHHhhhhhhcc
Q 019513 13 VLGEIETLKAAKSDIDYRISALEAQLR-------DTTVSQPQTDTVSNGSY------RPSSAVDYGLSPDMIYRYSRHLL 79 (340)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~e~~ry~Rq~~ 79 (340)
||++++++|.+|.++..+|-+|-.+-. +.....+.+. ..+... .........|+++.++..-|.++
T Consensus 1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v-~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~ 79 (374)
T PRK11199 1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSRHGLPI-YVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVM 79 (374)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 367788888888888887776632221 1111111000 000000 00001124578887777766654
Q ss_pred CCCCCHHHHHccc-----CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 80 LPSFGVEGQSNLL-----KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 80 l~~~G~~~q~~L~-----~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
-..+-.+.+..++ ..+|+||| +|.+|..++..|...|. .++++|.+
T Consensus 80 ~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 80 RESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred HHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 2111122233332 36799998 99999999999999994 58888864
No 69
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.36 E-value=0.00072 Score=64.34 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=56.2
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+||.+..++..|+..|+.+|+|++.+. -...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 5778999999999999999999999999999987431 113477777777754332 2222211
Q ss_pred cCCc-ccHHhhcccCcEEEEcCC
Q 019513 171 ALRT-SNALEILSQYEIVVDATD 192 (340)
Q Consensus 171 ~~~~-~~~~~~l~~~DlVi~~tD 192 (340)
+.. ....+.+.++|+||+||-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 111 112234567999999874
No 70
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.31 E-value=0.00044 Score=68.59 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=59.4
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.|++++|+|||+|-+|.-+|++|+..|+.+|+|+. |+. -|++.+++.+. .++.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT~---------erA~~La~~~~-----~~~~--- 227 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RTL---------ERAEELAKKLG-----AEAV--- 227 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CCH---------HHHHHHHHHhC-----Ceee---
Confidence 48999999999999999999999999999999963 433 36666676665 2221
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChh
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
.-++..+.+.++|+||.+|..+.
T Consensus 228 ---~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 228 ---ALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ---cHHHHHHhhhhCCEEEEecCCCc
Confidence 22345677899999999998765
No 71
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00072 Score=63.88 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=54.3
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.+++++|+|+|+||+|..++..|...|+.++++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3678899999999999999999999999999998743 1356666665543321 111 1
Q ss_pred ccCCcccHHhhcccCcEEEEcCCC
Q 019513 170 EALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
.+..+.+.++|+||+||-.
T Consensus 177 -----~~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 177 -----LELQEELADFDLIINATSA 195 (278)
T ss_pred -----ccchhccccCCEEEECCcC
Confidence 1123456789999999854
No 72
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00095 Score=63.29 Aligned_cols=145 Identities=21% Similarity=0.328 Sum_probs=83.6
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+||.+..++..|+..|+.+|+|++.. ..|++.+++.+.+..+.+.......
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~ 184 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD 184 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc
Confidence 346899999999999999999999999999998643 2478888888887765222211111
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeecCceeEEEEEeCCCCCceeecCCCCCCCcccccc
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 250 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~i~v~~~~~~pC~~C~~~~~~~~~~~~~c 250 (340)
.+....+|+||+||----.-.. +-+.+... ..+...-+++..|... +......+
T Consensus 185 -------~~~~~~~dliINaTp~Gm~~~~--------~~~~~~~~----------~l~~~~~v~D~vY~P~-~TplL~~A 238 (283)
T COG0169 185 -------LEGLEEADLLINATPVGMAGPE--------GDSPVPAE----------LLPKGAIVYDVVYNPL-ETPLLREA 238 (283)
T ss_pred -------cccccccCEEEECCCCCCCCCC--------CCCCCcHH----------hcCcCCEEEEeccCCC-CCHHHHHH
Confidence 0111168999998753110000 00111100 1122233455554322 11111223
Q ss_pred cCCCccccHHHH-HHHHHHHHHHHHHhcCCCC
Q 019513 251 ADSGVLGVVPGI-IGCLQALEAIKVASAVGEP 281 (340)
Q Consensus 251 ~~~g~~gpv~~i-~g~l~A~eaik~l~g~~~~ 281 (340)
...|.. .+.|+ |-..||.|+.++.+|..++
T Consensus 239 ~~~G~~-~idGl~Mlv~Qaa~aF~lwtg~~p~ 269 (283)
T COG0169 239 RAQGAK-TIDGLGMLVHQAAEAFELWTGVEPP 269 (283)
T ss_pred HHcCCe-EECcHHHHHHHHHHHHHHHhCCCCC
Confidence 333433 33333 5566999999999998554
No 73
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.21 E-value=0.00073 Score=67.50 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=56.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.+.+++|+|+|+|+.|..++++|+..|+.+|+|+... ..|++.+++.+. ...+..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~-- 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHY-- 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEec--
Confidence 4778999999999999999999999999999997532 125555554432 122111
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChh
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
-++..+.+.++|+||.||..+.
T Consensus 233 ----~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 ----LSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ----HHHHHHHhccCCEEEECcCCCC
Confidence 1344667889999999998755
No 74
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.21 E-value=0.0029 Score=52.52 Aligned_cols=96 Identities=25% Similarity=0.341 Sum_probs=61.0
Q ss_pred cEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
||+|+|+ |-+|..+++.+.. .|+.=...+|...= . +...|+|. .+ ......+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~-~~g~d~g~----~~----~~~~~~~~v------- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------A-KVGKDVGE----LA----GIGPLGVPV------- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------T-TTTSBCHH----HC----TSST-SSBE-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------c-cccchhhh----hh----CcCCccccc-------
Confidence 7999999 9999999999998 77666667765430 0 00123331 10 000111111
Q ss_pred CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.++..+++..+|+|||.| +++.-...-++|.++++|+|.+.+
T Consensus 58 -~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 58 -TDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp -BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred -chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECC
Confidence 245677777899999999 677777888899999999998754
No 75
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.12 E-value=0.0016 Score=55.37 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=31.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+++++|+|+|+|++|..+++.|...|...++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 667899999999999999999999987778888743
No 76
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.12 E-value=0.0013 Score=60.47 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=35.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D 126 (340)
.+++.+|+|+|+|+.|..++..|+..|+. +|.|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 58889999999999999999999999999 99999976
No 77
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.10 E-value=0.0013 Score=57.71 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=31.1
Q ss_pred cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~ 125 (340)
.|.+++|+|||+|. +|..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 58999999999998 59999999999998 6888773
No 78
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.10 E-value=0.0033 Score=63.07 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=62.7
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.+++++|+|+|+|++|..+|+.|+..|. +++++|.+.- ...+...+.|.+.+ ++ .+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~--~~--~~~ 58 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG--IE--LVL 58 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC--CE--EEe
Confidence 3678999999999999999999999996 6899886531 01122223343332 22 222
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.... .+.+.++|+||.+++..+... +-.+|++.|+|++.
T Consensus 59 ~~~~----~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 59 GEYP----EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred CCcc----hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 2222 134567999999988655444 44566778888765
No 79
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.07 E-value=0.0018 Score=58.78 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=67.0
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
-.|++++|+|||.|.+|..=++.|..+| .+++++-.+. + ......+.+ ..+..+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~--------------------~el~~~~~~----~~i~~~ 61 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E--------------------PELKALIEE----GKIKWI 61 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c--------------------HHHHHHHHh----cCcchh
Confidence 3688999999999999999999999999 5678775443 0 111111111 113333
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
...+. .+.+.++++||.|||+......|.+.|.++++|+-.
T Consensus 62 ~~~~~----~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 62 EREFD----AEDLDDAFLVIAATDDEELNERIAKAARERRILVNV 102 (210)
T ss_pred hcccC----hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceec
Confidence 32233 233455999999999999999999999999987654
No 80
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.06 E-value=0.0025 Score=61.18 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=58.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|+..+++.+. . .+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g---~--~~~~--- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG---G--NAVP--- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC---C--eEEe---
Confidence 6889999999999999999999999999999987532 23444443331 1 1111
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHH
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDC 203 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~ 203 (340)
.++..+.+..+|+||.||..+.....+...
T Consensus 229 ---~~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 229 ---LDELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred ---HHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 123455677899999999987773334433
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0071 Score=55.47 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=66.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.+++|+|+|-+|..+|+.|+..| ..+.+||.|. +.+.+.+.. .....++...-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~----------------------~~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDE----------------------ERVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCH----------------------HHHHHHhhh---hcceEEEEecCC
Confidence 47999999999999999999999 4577787653 112222221 122334433434
Q ss_pred ccc-HHhh-cccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEEee
Q 019513 174 TSN-ALEI-LSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSGAA 216 (340)
Q Consensus 174 ~~~-~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~~~ 216 (340)
..+ +.+. +.++|+++.+|++-.....+-..+.+ +|+|-+.+-+
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 332 2333 58899999999998887777777766 8999887654
No 82
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.97 E-value=0.0033 Score=62.88 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=54.2
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.+.+++|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+ . . ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~---g-~-~~---- 228 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKEL---G-G-EA---- 228 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-eE----
Confidence 47889999999999999999999999999999987531 2333333322 1 1 11
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhh
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPS 196 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~ 196 (340)
+..++..+.+.++|+||.||..+..
T Consensus 229 --i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 229 --VKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred --eeHHHHHHHHhhCCEEEECCCCCCc
Confidence 1112445667889999999987553
No 83
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.86 E-value=0.0087 Score=65.91 Aligned_cols=99 Identities=19% Similarity=0.324 Sum_probs=63.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCC-C------------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGV-G------------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR 157 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGv-g------------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~ 157 (340)
-+.++|+|+|+|.+|..++.+|++.+- . .+++.|. -..+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~--- 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVE--- 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHH---
Confidence 457799999999999999999998642 2 2444432 2223333333
Q ss_pred hhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 158 SINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 158 ~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
..|+++.... ++. .+...++++++|+||.|+.. .....+...|.+.|++++..+
T Consensus 625 -~~~~~~~v~l--Dv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 625 -GIENAEAVQL--DVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -hcCCCceEEe--ecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 2344332222 222 34456666889999999876 345567778888888877654
No 84
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.86 E-value=0.0054 Score=58.72 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=52.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEe
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH 168 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~ 168 (340)
++|.|+|+|++|+.+|..|+..|+. +|.|+|.+ ..|++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999853 2345556666655432 222221
Q ss_pred cccCCcccHHhhcccCcEEEEcCCCh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
.+ .+.+.++|+||.++..+
T Consensus 61 ------~~-~~~l~~aDIVIitag~~ 79 (306)
T cd05291 61 ------GD-YSDCKDADIVVITAGAP 79 (306)
T ss_pred ------CC-HHHhCCCCEEEEccCCC
Confidence 11 23368999999999874
No 85
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.80 E-value=0.0091 Score=60.47 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=69.1
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
-.|++++|+|||.|.++..=++.|..+|. +|++|-++.- ..+.++...-.+..+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~ 61 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLV 61 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEE
Confidence 46899999999999999999999999995 6888754321 112222222234444
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i 212 (340)
...+. .+.++++++||.|||+......|.+.|+..++++-
T Consensus 62 ~~~~~----~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 62 EGPFD----ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred eCCCC----hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 54444 34568899999999999999999999999988643
No 86
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.78 E-value=0.0057 Score=52.73 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=59.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh------CCCceEEEe
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI------NSTVHIIEH 168 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l------np~v~i~~~ 168 (340)
+|.|+|+|..|+.+|..|+..| .+++|...|.= ..+.|++- .|..++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-----------------------~~~~i~~~~~n~~~~~~~~l~~- 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-----------------------QIEEINETRQNPKYLPGIKLPE- 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-----------------------HHHHHHHHTSETTTSTTSBEET-
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-----------------------HHHHHHHhCCCCCCCCCcccCc-
Confidence 6999999999999999999999 67888765531 11122211 22332222
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~ 214 (340)
+..+ ..+..+.+++.|+||.++-+...+..+.+... +.+.++|+.
T Consensus 56 ~i~~-t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 56 NIKA-TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp TEEE-ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cccc-ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 1122 24556778999999999998888877777654 456667763
No 87
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.73 E-value=0.0047 Score=52.47 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=53.4
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
||.|||+ |.+|+.+|..|+..|+. +|.|+|.+. .|++..+.-|....+..........
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence 7999999 99999999999999985 599998432 2666666666665433322211111
Q ss_pred CcccHHhhcccCcEEEEcCCCh
Q 019513 173 RTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
+..+.++++|+||.+...+
T Consensus 62 ---~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 62 ---GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp ---SSGGGGTTESEEEETTSTS
T ss_pred ---ccccccccccEEEEecccc
Confidence 2244578999999887664
No 88
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.72 E-value=0.0087 Score=53.17 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=56.7
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++.+.+.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999998 488887633 235556666554322 2333322
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
+ ..+.++..+.++++|+||.++....
T Consensus 84 ~-~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 84 E-TSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred e-CCCHHHHHHHHhcCCEEEECCCCCc
Confidence 1 1123444567789999998886544
No 89
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.72 E-value=0.011 Score=53.10 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.1
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.|++++|+|+|.|.+|..+++.|...|. ++.++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 5788999999999999999999999996 67788754
No 90
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.70 E-value=0.0082 Score=55.99 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~a----Gv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ 158 (340)
++|++.||+++|+|+.|..+++.|..+ |+ ++|.++|.+-+=..+ ..++ -..-+...+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l----~~~~~~~a~~ 88 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDL----NPHKKPFARK 88 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSH----SHHHHHHHBS
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccC----Chhhhhhhcc
Confidence 469999999999999999999999999 99 899999976431110 0111 1112222223
Q ss_pred hCCCceEEEecccCCcccHHhhcccC--cEEEEcCCChh--hHHHHHHHHHHcCCcEEEEe
Q 019513 159 INSTVHIIEHREALRTSNALEILSQY--EIVVDATDNAP--SRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 159 lnp~v~i~~~~~~~~~~~~~~~l~~~--DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~ 215 (340)
.++.... .++.+.++.. |++|.++.-.. ++.+|...+.....|+|+.-
T Consensus 89 ~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 89 TNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp SSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred Ccccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEEC
Confidence 3322111 3556677766 99998875333 56677777887888998754
No 91
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.66 E-value=0.017 Score=54.54 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=68.9
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~a----Gv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ 158 (340)
++|++.+|+++|+|+.|..+++.|..+ |+ ++|.++|.+-+=..+ | .++-..|.. ..+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence 578899999999999999999999988 99 799999966431111 1 112122222 2222
Q ss_pred hCCCceEEEecccCCcccHHhhcc--cCcEEEEcCC--ChhhHHHHHHHHHHcCCcEEEEe
Q 019513 159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATD--NAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 159 lnp~v~i~~~~~~~~~~~~~~~l~--~~DlVi~~tD--~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.++ ....++.+.++ +.|++|.++. ..-++..|...+.....|+|+.-
T Consensus 89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 222 01134566777 7788888875 23456677777777778888753
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.65 E-value=0.013 Score=45.73 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=56.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC--CcEEEE-eCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 95 SILVIGAGGLGSPALLYLAACGV--GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv--g~i~lv-D~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
||.|||+|.+|..++..|+..|+ .++.++ +. .-+.+ +.+.+..+ +.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~-~~~~~~~~-~~~------ 50 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKA-AELAKEYG-VQA------ 50 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHH-HHHHHHCT-TEE------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHH-HHHHHhhc-ccc------
Confidence 68999999999999999999994 344433 32 12222 22333332 111
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHH-HHHcCCcEEEEe
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDC-CVVLGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~-~~~~~~p~i~~~ 215 (340)
...+..+.++.+|+||.|+........+.+. ....++-+|+..
T Consensus 51 -~~~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 51 -TADDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp -ESEEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred -ccCChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 1123466778899999999987777776666 345667777753
No 93
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.63 E-value=0.011 Score=57.24 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.2
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
++..||.|||+|.+|+.+|..|+..|+..+.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 566899999999999999999999998669999854
No 94
>PLN00203 glutamyl-tRNA reductase
Probab=96.57 E-value=0.0075 Score=61.95 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=54.6
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
|.+++|+|||+|.+|..++++|...|+.+|++++.+. .|++.+++.+ +.+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~-------------------era~~La~~~----~g~~i~~~~- 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE-------------------ERVAALREEF----PDVEIIYKP- 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHh----CCCceEeec-
Confidence 6689999999999999999999999999999986431 2444444333 233222211
Q ss_pred cCCcccHHhhcccCcEEEEcCCChh
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
.++..+.+.++|+||.||....
T Consensus 320 ---~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 320 ---LDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred ---HhhHHHHHhcCCEEEEccCCCC
Confidence 1234566789999999987654
No 95
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.011 Score=60.58 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHHHcccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCce
Q 019513 86 EGQSNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVH 164 (340)
Q Consensus 86 ~~q~~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~ 164 (340)
.-+.-+.+++|+|-|+|| +|+++++.++..+.++|.++|.| ++|-..+...|++..|+.+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHHHHHHHHHhhCCCcc
Confidence 346779999999999887 89999999999999999998755 4577788889999999888
Q ss_pred EEEecccCCc-ccHHhhccc--CcEEEEcCC
Q 019513 165 IIEHREALRT-SNALEILSQ--YEIVVDATD 192 (340)
Q Consensus 165 i~~~~~~~~~-~~~~~~l~~--~DlVi~~tD 192 (340)
+..+-.++.+ +.....+.+ .|+|+.+..
T Consensus 304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred eEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 8888887765 345556666 899998764
No 96
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.54 E-value=0.0049 Score=61.79 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=53.1
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+.+++|+|+|+|.+|..++.+|...|+.+++++|.+. .|+..+++.+ . ..+..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~---g--~~~~~--- 232 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEF---G--GEAIP--- 232 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHc---C--CcEee---
Confidence 7889999999999999999999999999999987532 2333333332 1 11111
Q ss_pred cCCcccHHhhcccCcEEEEcCCChh
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
.++..+.+.++|+||.||..+.
T Consensus 233 ---~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 233 ---LDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ---HHHHHHHhccCCEEEECCCCCC
Confidence 1233456678999999998755
No 97
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.52 E-value=0.0097 Score=57.36 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc-eEEEec
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR 169 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v-~i~~~~ 169 (340)
+..||.|||+|.+|+.+|..|+..|+- +|.|+|- -..|++..+.-|....|.. .+...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~- 64 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIY- 64 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEE-
Confidence 346999999999999999999999985 7999974 2345556666666655422 11111
Q ss_pred ccCCcccHHhhcccCcEEEEcCCC
Q 019513 170 EALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
..+ .+.++++|+||.+...
T Consensus 65 ----~~~-~~~~~~adivIitag~ 83 (315)
T PRK00066 65 ----AGD-YSDCKDADLVVITAGA 83 (315)
T ss_pred ----eCC-HHHhCCCCEEEEecCC
Confidence 112 3347899999987665
No 98
>PRK04148 hypothetical protein; Provisional
Probab=96.42 E-value=0.025 Score=47.78 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=67.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
++.+|++||+| .|..+|..|+..|. .++.+|-+. ..++.++ +.. +.+...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a~----~~~----~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKAK----KLG----LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHH----HhC----CeEEECc
Confidence 44789999999 99999999999995 688887432 2233332 221 2333334
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
+... ..++.+++|+|-.+--.++....|-+.+.+.+.+++-.-
T Consensus 67 lf~p-~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 67 LFNP-NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred CCCC-CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3322 256678999999888777788889999999999988643
No 99
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.37 E-value=0.022 Score=53.16 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=68.3
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCC----------cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG----------RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg----------~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ 158 (340)
++|++.||+++|+|+.|..+++.|..+|+. +|.++|.+-+-..+- .+.-..|... ++ -
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~---~ 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-AR---F 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HH---H
Confidence 578999999999999999999999999987 899999664311100 0111111111 11 1
Q ss_pred hCCCceEEEecccCCcccHHhhcc--cCcEEEEcCCCh--hhHHHHHHHHHHcCCcEEEEe
Q 019513 159 INSTVHIIEHREALRTSNALEILS--QYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 159 lnp~v~i~~~~~~~~~~~~~~~l~--~~DlVi~~tD~~--~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.++.- ...++.+.++ +.|++|..+..+ -++..|...+.....|+|+.-
T Consensus 89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 11110 0135666777 788888877632 356677777777788888754
No 100
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.32 E-value=0.022 Score=54.73 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=51.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC-----CceEEEe
Q 019513 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS-----TVHIIEH 168 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp-----~v~i~~~ 168 (340)
||.|||+|.+|+.+|..|+..|+ ++|.|+|- -+.|++.-+.-|....+ ++++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~- 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA- 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence 68999999999999999999998 67999983 23455555555555433 233332
Q ss_pred cccCCcccHHhhcccCcEEEEcCCCh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
. ..+.++++|+||.+...+
T Consensus 61 -~------~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 61 -G------DYDDCADADIIVITAGPS 79 (307)
T ss_pred -C------CHHHhCCCCEEEECCCCC
Confidence 1 145678999999887753
No 101
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.29 E-value=0.036 Score=52.29 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+|+|+|.+|+.++..|+.+| .+++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 6999999999999999999999 468998863
No 102
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.28 E-value=0.017 Score=55.73 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=32.7
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.++.+|.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999954
No 103
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.016 Score=58.67 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=58.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+++++|+|+|+|++|.++|..|...|. +++++|.... .......+.|++. .+++..-.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~- 71 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGP- 71 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECC-
Confidence 567899999999999999999999997 5999885421 1122344455554 34443211
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
... ....+|+||.++.-.+...++ ..+++.|+|+++
T Consensus 72 ~~~------~~~~~D~Vv~s~Gi~~~~~~~-~~a~~~gi~v~~ 107 (480)
T PRK01438 72 GPT------LPEDTDLVVTSPGWRPDAPLL-AAAADAGIPVWG 107 (480)
T ss_pred Ccc------ccCCCCEEEECCCcCCCCHHH-HHHHHCCCeecc
Confidence 111 235689999887654433222 234555555543
No 104
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.015 Score=55.29 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.5
Q ss_pred cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD 124 (340)
.+++++|+|+|.|+ +|.+++..|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 57899999999999 99999999999998 899875
No 105
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.26 E-value=0.04 Score=51.44 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=56.6
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 94 SSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
-+|+|+|+ |.+|..++..+... ++.-..++|.+.-. .... ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~---~~~~------------------------~~~~i~----- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP---LVGQ------------------------GALGVA----- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc---cccc------------------------CCCCcc-----
Confidence 37999999 99999999988764 55556667654310 0000 000110
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~ 214 (340)
...+..+++.++|+|||++ ++..-..+...|.+.|+|+|.+
T Consensus 50 -~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 50 -ITDDLEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 1133455566789999998 4555567788899999999965
No 106
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.25 E-value=0.011 Score=59.19 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.+.+++|+|+|+|.+|..++..|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 4689999999999999999999999998 688888654
No 107
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.18 E-value=0.075 Score=52.37 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=32.1
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 3677889999999999999999999998 69999864
No 108
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.16 E-value=0.01 Score=51.40 Aligned_cols=123 Identities=22% Similarity=0.233 Sum_probs=68.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.+|.+||+|..|+.+|++|+.+|.. +.++|.+.- ...+. .+.|-..+...++.+++. ++-+......-.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~-----~~~g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL-----AEAGAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH-----HHTTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh-----HHhhhhhhhhhhhHhhcc--cceEeecccchh
Confidence 4799999999999999999999964 778774421 11110 012333344444444443 332322221100
Q ss_pred -cc-----cHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513 174 -TS-----NALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (340)
Q Consensus 174 -~~-----~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~ 227 (340)
.+ +....+..-++|||++-. +.....+.+.+...|+.+|++...|. .|.+.++.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~ 136 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMV 136 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEE
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEc
Confidence 00 123333456788887655 44566788888889999998887664 35554443
No 109
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.15 E-value=0.034 Score=55.58 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.1
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+.+++|+|+|+|.+|..+++.+...|+ ++.++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 678999999999999999999999998 688887553
No 110
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.14 E-value=0.026 Score=54.00 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..+|.|+|+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999995 68888865
No 111
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.12 E-value=0.027 Score=53.87 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=52.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ceEEEeccc
Q 019513 96 ILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEHREA 171 (340)
Q Consensus 96 VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~i~~~~~~ 171 (340)
|.|||+|.+|+.+|..|+..|+ .+|.|+|.+ +.|++..+..|....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 569999843 34566666667766543 22221
Q ss_pred CCcccHHhhcccCcEEEEcCCCh
Q 019513 172 LRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
. .+ .+.++++|+||.+...+
T Consensus 58 -~-~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 58 -G-GD-YADAADADIVVITAGAP 77 (300)
T ss_pred -C-CC-HHHhCCCCEEEEcCCCC
Confidence 1 11 34678999999988764
No 112
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.09 E-value=0.017 Score=56.10 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=33.3
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|.+++|+|||+|-+|.-++++|...|+.+|++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 488999999999999999999999999999999753
No 113
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.036 Score=52.49 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=33.1
Q ss_pred CCHHHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 83 FGVEGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 83 ~G~~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|+......+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4444445678899999986 7899999999999997 5666654
No 114
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.04 E-value=0.039 Score=50.37 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=35.4
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..|+.++|+|.|.|.+|..+|+.|...|...+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357899999999999999999999999999999998654
No 115
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.04 E-value=0.08 Score=52.97 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=62.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+...+|+|+|+|.+|..+++.|...|. .++++|.|. .+. +.+++..+++.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~-------------------~~~----~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP-------------------ERA----EELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHH----HHHHHHCCCCeE--EEC
Confidence 457899999999999999999999886 578888653 112 223332233332 222
Q ss_pred cCCccc-H-HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513 171 ALRTSN-A-LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (340)
Q Consensus 171 ~~~~~~-~-~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i 212 (340)
+.+... . ...++++|.||.++++......+...+++.+.+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i 326 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV 326 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence 322222 1 12357899999999887776667667777765433
No 116
>PLN02602 lactate dehydrogenase
Probab=96.04 E-value=0.02 Score=56.09 Aligned_cols=75 Identities=12% Similarity=0.277 Sum_probs=52.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---CceEEEec
Q 019513 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEHR 169 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~i~~~~ 169 (340)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|- -+.|++..+.-|....+ .++|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence 699999999999999999999998 57999984 22345555555555433 23332211
Q ss_pred ccCCcccHHhhcccCcEEEEcCCCh
Q 019513 170 EALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
+ .+.++++|+||.+...+
T Consensus 99 ------d-y~~~~daDiVVitAG~~ 116 (350)
T PLN02602 99 ------D-YAVTAGSDLCIVTAGAR 116 (350)
T ss_pred ------C-HHHhCCCCEEEECCCCC
Confidence 1 33478999999886653
No 117
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.02 E-value=0.015 Score=54.90 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4589999999999999999999999999998754
No 118
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.00 E-value=0.035 Score=53.69 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=65.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
-..++|+|+|+|+.|...+..|. ..|+.++.++|.+ ..|++..++.+.+.. .+++..+
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~- 183 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV- 183 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe-
Confidence 34678999999999998888775 5689999998643 246677777776533 2333222
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
++..+.+.++|+|+.||-+.. ..+. .+.+.|..++..+
T Consensus 184 -----~~~~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~iG 221 (325)
T PRK08618 184 -----NSADEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINAVG 221 (325)
T ss_pred -----CCHHHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEecC
Confidence 234566789999999998764 3444 5556677665544
No 119
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.98 E-value=0.02 Score=55.09 Aligned_cols=78 Identities=23% Similarity=0.195 Sum_probs=56.6
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+...++|+|+|+|..|...++.+.. .++.+|.+++.+ ..|++..++.+.+.... +...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~~--~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGFD--AEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCCc--eEEe
Confidence 4456899999999999999987765 688899997532 35777787777664222 2221
Q ss_pred cccCCcccHHhhcccCcEEEEcCCCh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
++..+.+.++|+|+.||.+.
T Consensus 181 ------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 181 ------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------CCHHHHHhcCCEEEEeeCCC
Confidence 33456678999999998864
No 120
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.98 E-value=0.035 Score=53.46 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
...+++++|.|||.|.+|..+|+.|...|+ ++..+|... . +. +.+. .
T Consensus 131 ~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~-------------~------~~-----------~~~~--~ 177 (312)
T PRK15469 131 EYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR-------------K------SW-----------PGVQ--S 177 (312)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC-------------C------CC-----------CCce--e
Confidence 346889999999999999999999999997 466666421 0 00 0000 0
Q ss_pred ecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513 168 HREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
+ .......++++.+|+|+.+.. +..++.+++..... .+.-+|+.+
T Consensus 178 ~---~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 178 F---AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred e---cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 1 122356678889998887765 46678888753322 344466644
No 121
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.98 E-value=0.022 Score=54.89 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC---ceEEEe
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST---VHIIEH 168 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~---v~i~~~ 168 (340)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-. ..|++..+.-|....|. .++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999984 69999842 23455555556655432 233221
Q ss_pred cccCCcccHHhhcccCcEEEEcCCC
Q 019513 169 REALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
.+ .+.++++|+||.+...
T Consensus 64 ------~d-y~~~~~adivvitaG~ 81 (312)
T cd05293 64 ------KD-YSVTANSKVVIVTAGA 81 (312)
T ss_pred ------CC-HHHhCCCCEEEECCCC
Confidence 12 2347899999987664
No 122
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.98 E-value=0.17 Score=40.60 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=56.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (340)
Q Consensus 96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~ 175 (340)
|+|+|.|.+|..+++.|...+ -.+.++|.|. ...+.+++.. +..+....+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~-----------------------~~~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP-----------------------ERVEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH-----------------------HHHHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc-----------------------HHHHHHHhcc----cccccccchhh
Confidence 789999999999999999944 5799999764 1123333332 22344444433
Q ss_pred cHHh--hcccCcEEEEcCCChhhHHHHHHHHHHc
Q 019513 176 NALE--ILSQYEIVVDATDNAPSRYMISDCCVVL 207 (340)
Q Consensus 176 ~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~ 207 (340)
+..+ -+++++.||.++++......+...++..
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 3222 3578999999999888877777777763
No 123
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.93 E-value=0.059 Score=52.08 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
...|++++|.|||.|.+|..+|++|..+|+. +.+.|... +.... .... ..++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~~--------------------~s~~~---A~~~--G~~v-- 62 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRPG--------------------KSFEV---AKAD--GFEV-- 62 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECcc--------------------hhhHH---HHHc--CCEE--
Confidence 4679999999999999999999999999984 55554210 11000 1111 1211
Q ss_pred ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHH
Q 019513 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISD 202 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~ 202 (340)
.+..+.++.+|+|+.+.-+..++..+++
T Consensus 63 -------~sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 63 -------MSVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred -------CCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1356778899999988877777777664
No 124
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.91 E-value=0.056 Score=50.74 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.++++|+|+|+|++|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 357789999999999999999999996 8888864
No 125
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.91 E-value=0.033 Score=52.70 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 69999854
No 126
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.91 E-value=0.032 Score=53.25 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999996 47888764
No 127
>PLN02494 adenosylhomocysteinase
Probab=95.89 E-value=0.0099 Score=60.05 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=41.9
Q ss_pred CCCHHH-Hhhhh-hhccCCCCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 65 GLSPDM-IYRYS-RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 65 ~l~~~e-~~ry~-Rq~~l~~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+.+... -+||. ||..+..+=.....-+.+++|+|+|+|.+|..+|+.+...|+ ++.++|.|.
T Consensus 224 s~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 224 SVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred hhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 344442 35777 555431110111123689999999999999999999999998 588887654
No 128
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.85 E-value=0.017 Score=44.63 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=34.7
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..+..++|+|+|+|..|..++.+|...|..++.++|.|.
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 347889999999999999999999999888999998733
No 129
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.85 E-value=0.027 Score=53.64 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.8
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5778999999999999999999999997 7888774
No 130
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.80 E-value=0.049 Score=52.70 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=56.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
..++|+|+|+|+.|...+..|. ..++.+++|++.+ ..|++..++.+.+..+ +++...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~-- 185 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAA-- 185 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence 3468999999999999999997 5788999998643 2477777777765332 333222
Q ss_pred cCCcccHHhhcccCcEEEEcCCC
Q 019513 171 ALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
++..+.+.++|+|+.||-.
T Consensus 186 ----~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 186 ----TDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred ----CCHHHHhccCCEEEEecCC
Confidence 3456677899999999876
No 131
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.087 Score=53.02 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=58.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
++|+|+|+|+.|..+|..|.+.|. ++++.|..... +.......|... .+++..- ....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence 479999999999999999999996 68888854321 122223345443 3444321 1122
Q ss_pred cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.+.....+.++|+||....-+.... +-..+++.++|+++
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~~~-~~~~a~~~~i~v~~ 97 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWDHP-TLVELRERGIEVIG 97 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCCCH-HHHHHHHcCCcEEE
Confidence 2222345678999987655444333 33345667777765
No 132
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.77 E-value=0.03 Score=51.29 Aligned_cols=81 Identities=27% Similarity=0.378 Sum_probs=61.0
Q ss_pred ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
+++++++++| +||+|-.+++.|...|+..+.|.|.-. | -.+...|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence 5678888884 999999999999999999888865311 1 34667899999999999988
Q ss_pred ccCCcc-c-------HHhhcccCcEEEEcCC
Q 019513 170 EALRTS-N-------ALEILSQYEIVVDATD 192 (340)
Q Consensus 170 ~~~~~~-~-------~~~~l~~~DlVi~~tD 192 (340)
.+++.. . ...-+...|++|+-..
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgAG 92 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGAG 92 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcccc
Confidence 888752 1 2223466888887643
No 133
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.76 E-value=0.15 Score=44.10 Aligned_cols=88 Identities=25% Similarity=0.281 Sum_probs=56.9
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
|+|+|+ |.+|..+++.|...| .+++++= |. ..|.+. .+.+++...+. .+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~~~~~~d~-~d~ 51 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGVEIIQGDL-FDP 51 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTEEEEESCT-TCH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccccccceeee-hhh
Confidence 789998 779999999999999 5566532 11 113222 55565543332 233
Q ss_pred ccHHhhcccCcEEEEcCCChh----hHHHHHHHHHHcCCcEE
Q 019513 175 SNALEILSQYEIVVDATDNAP----SRYMISDCCVVLGKPLV 212 (340)
Q Consensus 175 ~~~~~~l~~~DlVi~~tD~~~----~r~~i~~~~~~~~~p~i 212 (340)
+...+.++++|.||.+..... .-..+-+++.+.+++-+
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 93 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRV 93 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred hhhhhhhhhcchhhhhhhhhcccccccccccccccccccccc
Confidence 556777889999999986422 22345667777787643
No 134
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.73 E-value=0.013 Score=49.52 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=50.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (340)
Q Consensus 96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~ 175 (340)
|+|+|+|++|+.+|..|..+|.. +++++... ....+.++-+.- ..+.-+......... .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~~------------------~~~~~~~~~~~~~~~-~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLTI------------------TGPDGDETVQPPIVI-S 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEEE------------------EETTEEEEEEEEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEEE------------------Eecccceeccccccc-C
Confidence 78999999999999999998854 77766432 111111111100 001100000000000 0
Q ss_pred cHHhhcccCcEEEEcCCChhhHHHHHHHHHH
Q 019513 176 NALEILSQYEIVVDATDNAPSRYMISDCCVV 206 (340)
Q Consensus 176 ~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~ 206 (340)
........+|+||.|+-.......+..+...
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred cchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence 1123457899999999998888888775433
No 135
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.73 E-value=0.04 Score=52.17 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 699998654
No 136
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.71 E-value=0.036 Score=53.63 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=50.6
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
++-.||+|+|+ |.+|+.++..|+..|. .+|.|+|-+. ++.-+.-|...++...+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~---------------------~~g~a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG---------------------APGVAADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC---------------------CcccccchhhcCcCceEEEe
Confidence 56679999999 9999999999997776 4799998521 11111122333333333222
Q ss_pred cccCCcccHHhhcccCcEEEEcCCCh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
. ++.+..+.++++|+||.+...+
T Consensus 65 t---d~~~~~~~l~gaDvVVitaG~~ 87 (321)
T PTZ00325 65 A---DGELWEKALRGADLVLICAGVP 87 (321)
T ss_pred c---CCCchHHHhCCCCEEEECCCCC
Confidence 1 1122256678999999887763
No 137
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.69 E-value=0.081 Score=50.81 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=53.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc---
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE--- 170 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~--- 170 (340)
.||+|+|+|++|+..+..|+++| ..++++-.+. + .+++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------R----LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------H----HHHHHhC--CeEEecCCCccc
Confidence 37999999999999999999999 6666643221 1 2222222 222222221
Q ss_pred -cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513 171 -ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (340)
Q Consensus 171 -~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~ 208 (340)
.....+..+....+|+||.++-+..+...+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 01112223445579999999888777777666654443
No 138
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.69 E-value=0.1 Score=47.81 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=54.9
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+..+|.|||+|.+|..++..|...|. ..+.+++.. ...|++.+++ +. .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence 45689999999999999999998873 224333311 0112222221 11 1221 1
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG 214 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~ 214 (340)
.+..+.++++|+|+.|+-....+..+.+.... .+..+|+.
T Consensus 58 ------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~ 98 (245)
T PRK07634 58 ------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTV 98 (245)
T ss_pred ------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEE
Confidence 12345567899999999877666666655422 34556664
No 139
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.67 E-value=0.025 Score=53.86 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=57.9
Q ss_pred EEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCC--ce--EEEecc
Q 019513 96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINST--VH--IIEHRE 170 (340)
Q Consensus 96 VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~--v~--i~~~~~ 170 (340)
|+|-|+|| +|++++++|++.+..+|.++|.|. ++--.+.+.+++..++ +. +..+..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E-------------------~~l~~l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE-------------------NKLYELERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H-------------------HHHHHHHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh-------------------hHHHHHHHHHhhcccccCcccccCceee
Confidence 68888655 899999999999999999998665 3444555556554443 43 234455
Q ss_pred cCCc-ccHHhhcc--cCcEEEEcCCChhhH-----------------HHHHHHHHHcCCc-EEEEe
Q 019513 171 ALRT-SNALEILS--QYEIVVDATDNAPSR-----------------YMISDCCVVLGKP-LVSGA 215 (340)
Q Consensus 171 ~~~~-~~~~~~l~--~~DlVi~~tD~~~~r-----------------~~i~~~~~~~~~p-~i~~~ 215 (340)
++.+ +....+++ +.|+|+.+...-... .-+-++|.++++. +|..+
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IS 127 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIS 127 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEE
T ss_pred cccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 5554 33455666 789999886543221 1244777777764 44444
No 140
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.65 E-value=0.074 Score=49.48 Aligned_cols=89 Identities=24% Similarity=0.181 Sum_probs=54.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
.+|.|||+|.+|+.++..|...|. ..+.++|.+. .+++. +.+.. .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~----~~~~~-g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAA----LAEEY-GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHH----HHHhc-CCee------
Confidence 469999999999999999999984 3566665321 12222 22211 1111
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEE
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 214 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~ 214 (340)
. .+..+.+.++|+||.|+-....+..+..+....+..+|+.
T Consensus 53 -~-~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 53 -A-TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -c-CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 1 1233456789999999977666666666543334556653
No 141
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.60 E-value=0.053 Score=51.98 Aligned_cols=78 Identities=21% Similarity=0.219 Sum_probs=57.8
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+...++|+|+|+|..|...++.|.. .++.++.++|.+ ..|++..++.+...+. .+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--
Confidence 4456899999999999999999975 688889987643 3577788887765422 222
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
..+..+.+.++|+|+.||-+..
T Consensus 179 -----~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 179 -----PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred -----ECCHHHHhhcCCEEEEccCCCC
Confidence 1344567789999999988643
No 142
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.59 E-value=0.047 Score=52.17 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.3
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578999999999999999999999997 89988754
No 143
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.55 E-value=0.081 Score=52.77 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.2
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+.+++|+|+|+|.+|..++..|...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 689999999999999999999999998 588887654
No 144
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.54 E-value=0.049 Score=51.91 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=68.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~ 172 (340)
+|.|||+|.+|+.++.+|+..|. ++.++|.+.-....+ .+.|..-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999995 588888653111111 011222222333333332 355544444432 1
Q ss_pred Ccc---cHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513 173 RTS---NALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 173 ~~~---~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
..+ .....+..-++||+++.. +.....+.+.+...|+.++++...|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 111 122334556789998654 43444567788889999998765553
No 145
>PRK09242 tropinone reductase; Provisional
Probab=95.54 E-value=0.1 Score=47.76 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=58.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++++|.|+ |++|..+++.|+..|. ++.+++.+. .+.+.+.+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence 367889999986 6799999999999996 577776421 2445566667666777777777
Q ss_pred cccCCccc--------HHhhcccCcEEEEcCCC
Q 019513 169 REALRTSN--------ALEILSQYEIVVDATDN 193 (340)
Q Consensus 169 ~~~~~~~~--------~~~~l~~~DlVi~~tD~ 193 (340)
..++.... ..+.+...|+||.+...
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 66665422 12233568999888753
No 146
>PRK07680 late competence protein ComER; Validated
Probab=95.49 E-value=0.11 Score=48.83 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=52.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
+|.|||+|.+|+.++..|...|. ..+.++|.+. .++ +.+.+..+.+.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE-----
Confidence 59999999999999999999984 4567765431 112 2222222222211
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~ 215 (340)
.+..+.+.++|+||.|+-.......+.++... .+..+|+..
T Consensus 54 ---~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ 96 (273)
T PRK07680 54 ---KTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSIT 96 (273)
T ss_pred ---CCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 12334567789999888654445555554322 244455543
No 147
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.48 E-value=0.08 Score=50.49 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=28.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999996 68888854
No 148
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.47 E-value=0.032 Score=53.21 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.||.|||+|.+|+.+|..|+..|.+++.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999986
No 149
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.45 E-value=0.046 Score=52.64 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=57.7
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|++++|.|||.|.+|..+|+.|...|.. +..+|... ..+..
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~~----------------------- 185 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVCR----------------------- 185 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------ccccc-----------------------
Confidence 469999999999999999999999988874 55444210 00000
Q ss_pred cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
.......++++.+|+|+.+.- +..++.+|+...... +.-+|+.+
T Consensus 186 ---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 186 ---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred ---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 001235677888998877654 577888888655443 44466644
No 150
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.42 E-value=0.078 Score=52.21 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=61.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--C---
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--N--- 160 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--n--- 160 (340)
+..+|.|+|+|+.|+.+|..|+..|. .++.|+..|..- -++ ...+.+++- |
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~----~~~~~in~~~~N~~y 71 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGE----KLSDIINTKHENVKY 71 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cch----HHHHHHHhcCCCccc
Confidence 34689999999999999999999884 356666443210 011 122222221 1
Q ss_pred -CCceEEEecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHH----HcCCcEEEE
Q 019513 161 -STVHIIEHREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV----VLGKPLVSG 214 (340)
Q Consensus 161 -p~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~----~~~~p~i~~ 214 (340)
|.++. +..+. ..+..+.++++|+||.++-+...+..+.+... ..+.++|+.
T Consensus 72 lp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~ 128 (365)
T PTZ00345 72 LPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL 128 (365)
T ss_pred CCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE
Confidence 22221 11121 13345677899999999998888877776643 223456664
No 151
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.41 E-value=0.21 Score=47.93 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=48.5
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+++++|+|.|+ |++|+.+++.|+..| ..++.++|.+.. +...+...+ +...+..+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence 46788999986 779999999999987 457888774421 111111111 11234444
Q ss_pred cccCCc-ccHHhhcccCcEEEEcCC
Q 019513 169 REALRT-SNALEILSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~-~~~~~~l~~~DlVi~~tD 192 (340)
..++.. +...+.++++|+||.+..
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEECcc
Confidence 444443 344556677898888754
No 152
>PLN02427 UDP-apiose/xylose synthase
Probab=95.38 E-value=0.12 Score=50.72 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=64.5
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
+.++..+|+|.|+ |-+|+.+++.|...|--++..+|...- .+. +. .. .+. ....+. ++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~~-~l-~~---~~~----------~~~~~~--~~~ 69 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KIK-HL-LE---PDT----------VPWSGR--IQF 69 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hhh-hh-hc---ccc----------ccCCCC--eEE
Confidence 4567788999996 669999999999985236777764210 000 00 00 000 000112 334
Q ss_pred ecccCCc-ccHHhhcccCcEEEEcCCChh---------h--------HHHHHHHHHHcCCcEEEEeecCceeE
Q 019513 168 HREALRT-SNALEILSQYEIVVDATDNAP---------S--------RYMISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 168 ~~~~~~~-~~~~~~l~~~DlVi~~tD~~~---------~--------r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
+..++.. +...+.++++|+||.+..... . -..+-++|+..++.+|..++...+|.
T Consensus 70 ~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~ 142 (386)
T PLN02427 70 HRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK 142 (386)
T ss_pred EEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence 4444443 334566778899998764210 0 01133566777788988877665553
No 153
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.34 E-value=0.11 Score=50.62 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
...+|+|+|+|.+|--++..+...|..+|.++|.+. .|.+.|++..- ..+......
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g-----~~~~~~~~~ 223 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG-----ADVVVNPSE 223 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC-----CeEeecCcc
Confidence 334899999999999999999999999999997543 23333332111 111111100
Q ss_pred -CCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513 172 -LRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (340)
Q Consensus 172 -~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i 212 (340)
.......+.- ..+|+||+|+.+..+.....++++..|.-.+
T Consensus 224 ~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 0011112222 3599999999987766666666666665333
No 154
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.33 E-value=0.052 Score=51.70 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=65.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEecccCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~~~ 173 (340)
+|.|||+|.+|+.++.+|+..|. ++.++|.+.-...-+... |...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999994 577787654221111111 111111112222221 34544444443322
Q ss_pred cc---cHHhhcccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEEEEeecC
Q 019513 174 TS---NALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAALG 218 (340)
Q Consensus 174 ~~---~~~~~l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i~~~~~g 218 (340)
.+ .....+..=++|||++... ..-..+...+...+++++.+...|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 21 1223344557999987664 334445556677889999877665
No 155
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.33 E-value=0.091 Score=43.09 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=53.3
Q ss_pred cEEEEc-CChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEe
Q 019513 95 SILVIG-AGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEH 168 (340)
Q Consensus 95 ~VlVvG-~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~ 168 (340)
||.||| .|-+|.++++.|...- +.-+.++.... ..|+. +....| ...+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~--------~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKP--------LSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCe--------eehhccccccccceeEe
Confidence 699999 6779999999999832 22233332211 14442 222222 1111111
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
. . ..+.+.+.|+||.|+++...+.+...+ .+.|+++|+.+
T Consensus 58 ~--~----~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 58 D--A----DPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp E--T----SGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred e--c----chhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 1 1 133458999999999987666655554 88899999854
No 156
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.32 E-value=0.12 Score=48.11 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=51.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+|.|||+|-+|..+++.|...|.. .+.+.|.+ ..|++ .+.+..+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~-------------------~~~~~----~l~~~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN-------------------AQIAA----RLAERFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCC-------------------HHHHH----HHHHHcCCceEe------
Confidence 699999999999999999998853 23333211 11222 233322322221
Q ss_pred CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.+..+.++++|+|+.|+-.......+.......+..+|+
T Consensus 53 --~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 53 --KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred --CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 123445677999999988544555555443334555666
No 157
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.32 E-value=0.2 Score=48.26 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=59.4
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
.+|+|.|+ |-+|+.+++.|...|=-++..+|...- + +..+.+.-.++.+..++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~-------------------~-------~~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD-------------------R-------LGDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH-------------------H-------HHHhccCCCeEEEeCCC
Confidence 36999997 669999999999863236777663210 0 11111211234444455
Q ss_pred C-c-ccHHhhcccCcEEEEcCCC--h-------h--------hHHHHHHHHHHcCCcEEEEeecCcee
Q 019513 173 R-T-SNALEILSQYEIVVDATDN--A-------P--------SRYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 173 ~-~-~~~~~~l~~~DlVi~~tD~--~-------~--------~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
. + +...+.++++|+||.+... + . .-..+-++|++.+..+|..++...+|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 3 2 2334566788999976421 1 1 01124567777888899877665554
No 158
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.13 Score=47.17 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=56.8
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.|+++.++|.|+ ||+|.++++.|+..|.. +.+++.+. .+.+.+.+.+.+..+..++..+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 64 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAA 64 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 367889999997 56999999999999974 77766432 2445556666666666666666
Q ss_pred cccCCccc-H-------HhhcccCcEEEEcCC
Q 019513 169 REALRTSN-A-------LEILSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~~~-~-------~~~l~~~DlVi~~tD 192 (340)
..+++... . .+.+...|+||.+..
T Consensus 65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 66665432 1 122346799988765
No 159
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.31 E-value=0.036 Score=46.33 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=49.2
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
..-+|.|||+|-+|..+++.|..+|.. |.-| +. +....++++...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~----- 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAIL----- 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCccccccccccccccccc-----
Confidence 345799999999999999999999953 3322 11 1223444444444444321
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH----cCCcEEEEe
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV----LGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~----~~~p~i~~~ 215 (340)
+..+.+..+|+||.++-+-.......+++.. .+.-+++++
T Consensus 61 ----~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 61 ----DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -----TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred ----ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECC
Confidence 2235567899999888665655555555433 344455543
No 160
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.30 E-value=0.14 Score=52.08 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=33.5
Q ss_pred HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 86 ~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+....+.+++|+|+|+|+.|..++..|...|. .+++.|.
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 44455777899999999999999999999998 7888774
No 161
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.28 E-value=0.099 Score=50.74 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=51.4
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|++++|.|||+|.+|..+|.+|..+|+ ++.+.+... .|.... ..+. .+.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~---A~~~--G~~~--- 64 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKK---AEAD--GFEV--- 64 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHH---HHHC--CCee---
Confidence 45888999999999999999999999998 455444211 011111 1111 1211
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHH
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMI 200 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i 200 (340)
.+..+.++.+|+|+.++-+...+..+
T Consensus 65 ------~s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 ------LTVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred ------CCHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 13456778899999998866665555
No 162
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.26 E-value=0.19 Score=47.96 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D 126 (340)
..+|+|||+|.+|..++..|...|. .++.++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3579999999999999999999997 478888754
No 163
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.095 Score=48.49 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.9
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 467899999997 7899999999999997 5777764
No 164
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.24 E-value=0.1 Score=55.21 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCCCHHHHhhhhhhccCC-CCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccC-
Q 019513 64 YGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHT- 140 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~- 140 (340)
.+++=..++||--...+. .|... .+..-.+++|+|||+|..|-.+|.+|++.|.. ++|+|.+. .++-+..+.
T Consensus 296 ~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~~----~~GG~l~~gi 370 (654)
T PRK12769 296 GAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRHP----EIGGLLTFGI 370 (654)
T ss_pred CCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC----CCCceeeecC
Confidence 356666667775332210 01110 11123578999999999999999999999975 99998642 222221111
Q ss_pred -CCccCcccHHHHHHHHHhhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChh
Q 019513 141 -EPYIGQSKVKSAAATCRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 141 -~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
...+.+...+...+.++++. +++.... .+. .-...++...||.||.++....
T Consensus 371 p~~~l~~~~~~~~~~~~~~~G--v~~~~~~-~v~~~i~~~~~~~~~DavilAtGa~~ 424 (654)
T PRK12769 371 PAFKLDKSLLARRREIFSAMG--IEFELNC-EVGKDISLESLLEDYDAVFVGVGTYR 424 (654)
T ss_pred CCccCCHHHHHHHHHHHHHCC--eEEECCC-EeCCcCCHHHHHhcCCEEEEeCCCCC
Confidence 11122222222233344432 3332211 111 1122334467999999998754
No 165
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.24 E-value=0.19 Score=47.17 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=25.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACG--VGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D 126 (340)
+|.|||+|.+|..++..|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 3345556644
No 166
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.23 E-value=0.069 Score=51.08 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|+|+|+|++|+.++-+|+++|. .+++++..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 479999999999999999999995 68888864
No 167
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.23 E-value=0.17 Score=50.78 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=58.1
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+.+++|+|+|.|+.|..+|+.|+..|. ++++.|.+... . ....|.+....+.+.. .
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~------------------~---~~~~l~~~~~gi~~~~--g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP------------------E---RVAQIGKMFDGLVFYT--G 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc------------------h---hHHHHhhccCCcEEEe--C
Confidence 467899999999999999999999996 57888854311 0 0122433223344322 1
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
... ...+.++|+||....-++.... -..+++.++|+++
T Consensus 59 ~~~----~~~~~~~d~vv~spgi~~~~p~-~~~a~~~~i~v~~ 96 (445)
T PRK04308 59 RLK----DALDNGFDILALSPGISERQPD-IEAFKQNGGRVLG 96 (445)
T ss_pred CCC----HHHHhCCCEEEECCCCCCCCHH-HHHHHHcCCcEEE
Confidence 111 2234679999987765544333 3345667777764
No 168
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.21 E-value=0.083 Score=50.86 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999994 58888764
No 169
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.19 E-value=0.11 Score=50.51 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=59.1
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...- +. ... .+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~-------~~---- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDF-------LT---- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhh-------hh----
Confidence 46899999999999999999999999996 5777774320 00 000 00
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChh-hHHHHHHHHHH---cCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAP-SRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~---~~~p~i~~~ 215 (340)
. ..+..+.++.+|+|+.+.-..+ ++..+++.... .+..+|+.+
T Consensus 188 ---~-~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 ---Y-KDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred ---c-cCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 0 1235677889999888876544 56667654333 345566654
No 170
>PLN02240 UDP-glucose 4-epimerase
Probab=95.17 E-value=0.24 Score=47.53 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=28.2
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999986 7799999999999995 677776
No 171
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.17 E-value=0.027 Score=54.79 Aligned_cols=37 Identities=38% Similarity=0.630 Sum_probs=32.2
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~-aGvg~i~lvD~D 126 (340)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++.+++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 588999999999 7899999999985 589999998643
No 172
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.17 E-value=0.021 Score=50.22 Aligned_cols=94 Identities=22% Similarity=0.205 Sum_probs=58.7
Q ss_pred HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEE
Q 019513 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHII 166 (340)
Q Consensus 87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~ 166 (340)
....|.+++|.|+|.|.+|..+|+.|...|. ++..+|...-.. . .....
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~--------------------~---~~~~~------- 78 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE--------------------E---GADEF------- 78 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH--------------------H---HHHHT-------
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh--------------------h---hcccc-------
Confidence 3457899999999999999999999999998 688877543211 0 01110
Q ss_pred EecccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 167 EHREALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
.+......++++.+|+|+.+.- +..++.+|++..... +.-+|+.+
T Consensus 79 ----~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 79 ----GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp ----TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred ----cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 1112345677888998877765 456777777654433 33455543
No 173
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.12 Score=52.15 Aligned_cols=96 Identities=14% Similarity=0.203 Sum_probs=59.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
-+.+++|+|+|.|..|..+|+.|...|. .+++.|.+.-+ +.....+.|.+. .+.+..
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~-- 67 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKEL--GVKLVL-- 67 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhC--CCEEEe--
Confidence 4557899999999999999999999996 68888854310 000111224333 233321
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.... .+.+.++|+||....-++... +-..+++.++|+++
T Consensus 68 ~~~~----~~~~~~~dlVV~Spgi~~~~p-~~~~a~~~~i~i~s 106 (458)
T PRK01710 68 GENY----LDKLDGFDVIFKTPSMRIDSP-ELVKAKEEGAYITS 106 (458)
T ss_pred CCCC----hHHhccCCEEEECCCCCCCch-HHHHHHHcCCcEEe
Confidence 1111 233577999998755444333 34456778888875
No 174
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.13 Score=52.44 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=30.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+++++|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 467889999999999999999999997 58887743
No 175
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.14 E-value=0.048 Score=52.46 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=57.2
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-.. ..+.+ +
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~------------~~~~~-----------------~----- 185 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGK------------NKNEE-----------------Y----- 185 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcc------------ccccC-----------------c-----
Confidence 47999999999999999999999998886 4666664110 00000 0
Q ss_pred cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
......++++.+|+|+.+.- +.+++.+|++..... +.-+|+.+
T Consensus 186 ----~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 186 ----ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred ----eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 11235667788887766654 466788887665443 33456543
No 176
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.14 E-value=0.24 Score=44.97 Aligned_cols=97 Identities=22% Similarity=0.171 Sum_probs=55.3
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
+|.||| +|.+|+.++..|+..| .++.++|.+ ..|++.+.+..........+ ...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~---~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGS---DIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCC---CceEE
Confidence 699997 8999999999999999 567776532 12333333322211110000 00001
Q ss_pred cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEEE
Q 019513 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVSG 214 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~~ 214 (340)
..+..+.++.+|+||.|+-....+..+.++... .++.+|+.
T Consensus 59 ~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 59 GADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISP 100 (219)
T ss_pred EeChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEe
Confidence 112245567899999998877666666554322 23445543
No 177
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.033 Score=52.91 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|..|+.+|..|+.+|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999996 599998653
No 178
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.13 E-value=0.2 Score=48.68 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=57.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.+|.|+|+|.+|+.++..|+..| ++.++..+.-....++..... ....+.. ..+.+.+. .+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~-~~~l~~~---------~~l~~~i~-------~t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRN-SRYLGND---------VVLSDTLR-------AT 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCC-cccCCCC---------cccCCCeE-------EE
Confidence 57999999999999999999998 456654432111111111000 0001000 00001111 11
Q ss_pred cccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEEe
Q 019513 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSGA 215 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~~ 215 (340)
.+..+.++++|+||.|+-+...+..+.++... .+.++|+..
T Consensus 69 -~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~ 111 (341)
T PRK12439 69 -TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV 111 (341)
T ss_pred -CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 23345578899999999988888777766543 344566643
No 179
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.11 E-value=0.075 Score=50.31 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
-++|.|||+|..|+.+|..|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999996 68888854
No 180
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.11 E-value=0.042 Score=41.53 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=38.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln 160 (340)
||+|||.|.+|+++|..|+..|. +++|++...- ++ ......=.+.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999994 7888875431 11 1233444556667777764
No 181
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.07 E-value=0.08 Score=50.44 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=65.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~ 172 (340)
+|.|||+|.+|..++.+|+..|. .+.++|.+.-... .+ ...|...+....+.+++. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~-----~~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVD-----VA---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHH-----HH---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 5778876531100 00 012322233333333332 134444443332 1
Q ss_pred CcccHHh---hcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513 173 RTSNALE---ILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 173 ~~~~~~~---~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
..+-... .+..=.+|||++.. +..-..+.+.+...++.++++...|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 1111112 23344689988544 44555566777788888988665544
No 182
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.05 E-value=0.09 Score=50.44 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D 126 (340)
+|.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 779999853
No 183
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.068 Score=50.80 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=54.8
Q ss_pred cccCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.|++++|+|||.|. +|.+++..|...|. ++++++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence 58999999999999 99999999999984 577665210
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.+..+.++.+|+||.++..+. .+...-.+.+.-+|+.+.
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi 231 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGN 231 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCC
Confidence 234566788999999998754 233323445666666654
No 184
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.064 Score=50.50 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=29.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 788888553
No 185
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.98 E-value=0.13 Score=49.88 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 93 KSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
.++|+|+|+|+.|...+..|.. .|+.++.+++.+ ..|++..++.+++.. .+++..+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEe---
Confidence 4689999999999999999985 578999998643 236777777776432 2333222
Q ss_pred CCcccHHhhcccCcEEEEcCCCh
Q 019513 172 LRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
++..+.+.++|+|+.||-..
T Consensus 189 ---~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 ---RDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ---CCHHHHHccCCEEEEeeCCC
Confidence 23456678899999998653
No 186
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.98 E-value=0.18 Score=48.53 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.7
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
..+.+|+|.|+|++|..++..+...|+.++.++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 35789999999999999999999999988888764
No 187
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.96 E-value=0.096 Score=49.79 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+..+|+|+|+|++|..++..+...|+..+.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 35678999999999999999888899988887764
No 188
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.96 E-value=0.21 Score=48.24 Aligned_cols=101 Identities=21% Similarity=0.212 Sum_probs=62.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC-
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL- 172 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~- 172 (340)
.+|.|+|+|+.|+.+|..|+..| ..+.+...|.-....++... . -.+.-|++. .+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~--~---------------N~~yLp~i~---lp~~l~ 60 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR--E---------------NPKYLPGIL---LPPNLK 60 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC--c---------------CccccCCcc---CCcccc
Confidence 57999999999999999999999 66777665432111111110 0 000111111 11111
Q ss_pred CcccHHhhcccCcEEEEcCCChhhHHHHHHHH--HHcCCcEEEEe
Q 019513 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCC--VVLGKPLVSGA 215 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~--~~~~~p~i~~~ 215 (340)
...+..+.++++|+||.++-+...|..+.... ...+.++|++.
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 12456777888999999998888887777652 34566677653
No 189
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.94 E-value=0.042 Score=52.83 Aligned_cols=32 Identities=38% Similarity=0.608 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~ 125 (340)
.||.|+|+|.+|+.+|..|+.-+++ .+.|+|-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 4799999999999999999999999 9999984
No 190
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.16 Score=48.39 Aligned_cols=64 Identities=25% Similarity=0.243 Sum_probs=43.8
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.|++++|+|.|+ +|+|.++++.|++.|. ++.+++.+. .|.+.+.+.|.+.++..++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 366788999985 5699999999999995 577765331 2455555666666665555555
Q ss_pred cccCC
Q 019513 169 REALR 173 (340)
Q Consensus 169 ~~~~~ 173 (340)
..++.
T Consensus 71 ~~Dl~ 75 (313)
T PRK05854 71 ALDLS 75 (313)
T ss_pred EecCC
Confidence 55554
No 191
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.92 E-value=0.12 Score=50.12 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|.+|+.+|..++.+|. .++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999995 488888653
No 192
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.91 E-value=0.1 Score=50.67 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=54.3
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
-..+.+++|.|+|+|.+|..+|+.|-..| ..|. ... |+ .. .-+.+.+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~-y~~---------r~--------~~-~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVIL-YHS---------RT--------QL-PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceee-eec---------cc--------CC-chhhHHHhccc---------
Confidence 46889999999999999999999999966 3333 221 10 00 01111111111
Q ss_pred ecccCCcccHHhhcccCcE-EEEcCCChhhHHHHHHHHHH
Q 019513 168 HREALRTSNALEILSQYEI-VVDATDNAPSRYMISDCCVV 206 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~Dl-Vi~~tD~~~~r~~i~~~~~~ 206 (340)
..+..+.+.+.|+ ||.|..+..++.++|.....
T Consensus 208 ------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~ 241 (336)
T KOG0069|consen 208 ------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIE 241 (336)
T ss_pred ------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH
Confidence 2345667788885 56667888999999976433
No 193
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.90 E-value=0.089 Score=50.72 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=28.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|+|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 58888854
No 194
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.90 E-value=0.25 Score=49.48 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=57.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|+|+|+|.+|..+++.|...|. .+.++|.+. .+++.+ ++ ... +..+....+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~~----~~-~~~--~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRRL----QD-RLD--VRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHHH----Hh-hcC--EEEEEeCCCC
Confidence 79999999999999999999996 577887543 122222 21 112 2233333332
Q ss_pred -ccHHhh-cccCcEEEEcCCChhhHHHHHHHHHHc-CCcEE
Q 019513 175 -SNALEI-LSQYEIVVDATDNAPSRYMISDCCVVL-GKPLV 212 (340)
Q Consensus 175 -~~~~~~-l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i 212 (340)
....+. +.++|.||.++++...-..+...++.. +.+.+
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~i 95 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTT 95 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeE
Confidence 222333 578999999998877766666667665 54443
No 195
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.89 E-value=0.26 Score=46.40 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=55.8
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
+|.|||+|.+|..++..|...|. .++.++|.+.- .|. +.+....+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEE------
Confidence 69999999999999999999983 46777664310 111 112222222221
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~ 214 (340)
. .+..+.+.++|+||.|+-....+..+.++.. ..++.+|+.
T Consensus 55 -~-~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 55 -A-DNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI 97 (277)
T ss_pred -e-CCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 2233456789999999886666666665532 245567764
No 196
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.89 E-value=0.22 Score=47.95 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=59.6
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
..++|+|+|+|++|-....-+-..|..+|.++|-. .+|.+.|++ +.-.+........
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~-------------------~~Rle~Ak~----~Ga~~~~~~~~~~ 225 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV-------------------ANRLELAKK----FGATVTDPSSHKS 225 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC-------------------HHHHHHHHH----hCCeEEeeccccc
Confidence 56899999999999999999999999999998743 234444443 1111111111111
Q ss_pred CCcccHHhhc------ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 172 LRTSNALEIL------SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l------~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
..+...+.+ ..+|+.++|+....+-..--.+.+..|+ ++-++
T Consensus 226 -~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg 273 (354)
T KOG0024|consen 226 -SPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVG 273 (354)
T ss_pred -cHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCE-EEEec
Confidence 111111211 3489999999976654443445566666 44433
No 197
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.88 E-value=0.13 Score=53.37 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=31.5
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
-.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 357899999999999999999999998 599998543
No 198
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.87 E-value=0.19 Score=46.21 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.9
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..|+.++|+|.|.|.+|..+++.|...|+.-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56899999999999999999999999998877788764
No 199
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.86 E-value=0.24 Score=48.36 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=60.1
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC-------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 95 SILVIGAGGLGSPALLYLAACGV-------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv-------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
+|.|+|+|..|+.+|..|+..|. .+++++..+. ++- -+...+.+++...+.++-+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~---~~~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE---GRNLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC---CHHHHHHHHhcCCCccccC
Confidence 58999999999999999999883 4566665421 110 0112222322211111100
Q ss_pred ---ecccCC-cccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513 168 ---HREALR-TSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (340)
Q Consensus 168 ---~~~~~~-~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~ 214 (340)
.+..+. ..+..+.++++|+||.++-+...+..+.+... +.+.++|+.
T Consensus 63 gi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 63 GIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred CCcCCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 111111 13456778899999999988888877666542 345677774
No 200
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.23 Score=46.92 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|.+|..+|..|+.+|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999995 688888653
No 201
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.82 E-value=0.34 Score=38.96 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=54.6
Q ss_pred cEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+|+|||+|..|...+..+... ++.-..++|.+. .+++.+ .++.+ +. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~---~~~~~--~~--~~---- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAF---AEKYG--IP--VY---- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHH---HHHTT--SE--EE----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHH---HHHhc--cc--ch----
Confidence 699999999999999998887 333334555432 222222 22221 11 11
Q ss_pred CcccHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 173 RTSNALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 173 ~~~~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.+..++++ +.|+|+.+|.+ ..+..+...+.+.|++++.
T Consensus 52 --~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 52 --TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp --SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred --hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 22445554 68999988875 5566777778888887664
No 202
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.2 Score=45.93 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=50.4
Q ss_pred cccCCcEEEEcC-C-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 90 NLLKSSILVIGA-G-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 90 ~L~~~~VlVvG~-G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
.+++++|+|.|+ | |+|..+++.|+..|.. +.++|.+ ..+.+...+.+++..+...+..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 73 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIH-------------------ERRLGETADELAAELGLGRVEA 73 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEE
Confidence 355788999997 5 7999999999999975 7776532 1233444455544333334444
Q ss_pred ecccCCcc-cHHh-------hcccCcEEEEcCC
Q 019513 168 HREALRTS-NALE-------ILSQYEIVVDATD 192 (340)
Q Consensus 168 ~~~~~~~~-~~~~-------~l~~~DlVi~~tD 192 (340)
+..+++.. .... .+...|+||.+..
T Consensus 74 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 74 VVCDVTSEAQVDALIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 44455432 1211 1235688887765
No 203
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.81 E-value=0.15 Score=49.49 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
..+|+|+|+||+|.-.+++...+| -+++.+| .+..|.+.+++ +--+.-|.. .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~----lGAd~~i~~---~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKK----LGADHVINS---S- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHH----hCCcEEEEc---C-
Confidence 678999999999999999999999 6777765 45566655543 322222322 2
Q ss_pred CcccHHhhcccCcEEEEcCC
Q 019513 173 RTSNALEILSQYEIVVDATD 192 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD 192 (340)
+++.....-+.+|+||++..
T Consensus 219 ~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 219 DSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CchhhHHhHhhCcEEEECCC
Confidence 22222222233999999987
No 204
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.80 E-value=0.32 Score=50.57 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=50.5
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-------CC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-------ST 162 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-------p~ 162 (340)
-.++.|+|.|+ |++|..+++.|+..|. ++.+++.+. .|.+.+.+.+.++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 35567888886 7899999999999996 466554321 12333333332211 11
Q ss_pred ceEEEecccCCc-ccHHhhcccCcEEEEcCCC
Q 019513 163 VHIIEHREALRT-SNALEILSQYEIVVDATDN 193 (340)
Q Consensus 163 v~i~~~~~~~~~-~~~~~~l~~~DlVi~~tD~ 193 (340)
.++..+..++.. +.....+.++|+||.+...
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence 234445555553 3445567889999988643
No 205
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.78 E-value=0.26 Score=46.27 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred cEEEEc-CChhHHHHHHHHHH-cCCCcEEEEe-CCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 95 SILVIG-AGGLGSPALLYLAA-CGVGRLGIVD-HDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 95 ~VlVvG-~GglGs~va~~La~-aGvg~i~lvD-~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
+|+|+| +|.+|..++..+.. .++.-+.++| .+.-. +|+. +.+ +....+. .+..+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~-~~~~~~~-gv~~~--- 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGE-LAGIGKV-GVPVT--- 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHH-hcCcCcC-Cceee---
Confidence 799999 59999999999985 5776677777 22100 1110 000 1111100 01111
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.+..++...+|+|||+| .+.....+-..|.++|+|+|.+.+
T Consensus 60 ---~d~~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 60 ---DDLEAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred ---CCHHHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence 12223334589999998 566666777888899999987664
No 206
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.78 E-value=0.07 Score=50.87 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 96 VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
|.|||+|.+|+.+|..|+..|..++.|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6799999999999999999886699999976
No 207
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.75 E-value=0.18 Score=53.20 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
..+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++.+ ++. .. ..+..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~----~~~--g~--~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETL----RKF--GM--KVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHH----Hhc--CC--eEEEEeC
Confidence 5799999999999999999999997 4889997751 23333 222 22 2344444
Q ss_pred CcccHH--hhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513 173 RTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (340)
Q Consensus 173 ~~~~~~--~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~ 208 (340)
+..+.. .-++++|+||.++|+.+....+...++++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 433322 235689999999999988888877877763
No 208
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.75 E-value=0.052 Score=54.99 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.9
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.|.+++|+|+|.|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5899999999999999999999999998 588877553
No 209
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.74 E-value=0.16 Score=45.88 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=51.1
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+. .+...+...+...++. +..+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~ 60 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG-------------------DDAAATAELVEAAGGK--ARAR 60 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCe--EEEE
Confidence 466789999995 6799999999999996 577766442 2334444555544433 3444
Q ss_pred cccCCc-ccHHhhc-------ccCcEEEEcCCC
Q 019513 169 REALRT-SNALEIL-------SQYEIVVDATDN 193 (340)
Q Consensus 169 ~~~~~~-~~~~~~l-------~~~DlVi~~tD~ 193 (340)
..++.. +...+++ ..+|+||.+...
T Consensus 61 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 61 QVDVRDRAALKAAVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 444442 2222222 367888888633
No 210
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.71 E-value=0.1 Score=50.00 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+|.|||+|-+|+.+|..|+..|.+.+.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999995
No 211
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.70 E-value=0.16 Score=50.44 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=78.8
Q ss_pred CCCCCHHHHhhhhhhccCCCCCHHH------------------HHcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEE
Q 019513 63 DYGLSPDMIYRYSRHLLLPSFGVEG------------------QSNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGI 122 (340)
Q Consensus 63 ~~~l~~~e~~ry~Rq~~l~~~G~~~------------------q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~l 122 (340)
+.++--++..||.-.+-+ |..+- -++|+..+|++.|+|+.|..++..|..+|+. +|.+
T Consensus 153 p~cf~ie~~lr~~~~IPv--FhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~ 230 (432)
T COG0281 153 PRCFAIEERLRYRMNIPV--FHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFV 230 (432)
T ss_pred chhhHHHHHHhhcCCCCc--ccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEE
Confidence 345666677777655544 64322 1589999999999999999999999999998 9999
Q ss_pred EeCCcccccCCccccccCCC-c--cCcccHHHHHHHHHhhCCCceEEEecccCCcccHHhhcccCcEEEEcCCChh-hHH
Q 019513 123 VDHDVVELNNMHRQVIHTEP-Y--IGQSKVKSAAATCRSINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP-SRY 198 (340)
Q Consensus 123 vD~D~Ve~sNL~Rq~l~~~~-d--iG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~-~r~ 198 (340)
+|.--+ ++... | .++.|.+.+.+...... + ...+.+.|++|.++..-. +..
T Consensus 231 ~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~---~-------------~~~~~~adv~iG~S~~G~~t~e 285 (432)
T COG0281 231 VDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT---L-------------DLALAGADVLIGVSGVGAFTEE 285 (432)
T ss_pred EecCCc---------ccCCCcccccchHHHHHHHhhhcccc---c-------------cccccCCCEEEEcCCCCCcCHH
Confidence 996533 22111 2 35556555543322211 0 114567899998887522 344
Q ss_pred HHHHHHHHcCCcEEEEee
Q 019513 199 MISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 199 ~i~~~~~~~~~p~i~~~~ 216 (340)
++...+.. |+|..-+
T Consensus 286 ~V~~Ma~~---PiIfala 300 (432)
T COG0281 286 MVKEMAKH---PIIFALA 300 (432)
T ss_pred HHHHhccC---CEEeecC
Confidence 45544333 8877543
No 212
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.68 E-value=0.24 Score=48.21 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=55.8
Q ss_pred CcEEEEcCChhHHHHHHHHHH--------cCCC--cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAA--------CGVG--RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV 163 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~--------aGvg--~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v 163 (340)
-+|+|+|+|.+|+.+++.|.. .|+. -+.+.|.+. .++.+..+.. ..+.+..++-..-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~---~~l~~~~~~~~~~~ 70 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDL---REAKEVKENFGKLS 70 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCCh---HHHHHhhhccCchh
Confidence 479999999999999999877 5633 344445321 1122222221 22222222221111
Q ss_pred eEEEecccCCcccHHhhc--ccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 164 HIIEHREALRTSNALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 164 ~i~~~~~~~~~~~~~~~l--~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.+.. +......+..+++ .++|+||+++..... ..+...+.+.|+++|.+.
T Consensus 71 ~~~~-~~~~~~~~~~ell~~~~~DVvVd~t~~~~a-~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 71 NWGN-DYEVYNFSPEEIVEEIDADIVVDVTNDKNA-HEWHLEALKEGKSVVTSN 122 (336)
T ss_pred hccc-cccccCCCHHHHHhcCCCCEEEECCCcHHH-HHHHHHHHhhCCcEEECC
Confidence 1100 0000011334455 368999999965433 344455667788888654
No 213
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.16 Score=47.94 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=26.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+|+|+|+|++|+.+|..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999984 5888764
No 214
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.64 E-value=0.087 Score=53.72 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|+|+||+|..++..|+..|+ ++.++|.
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3577899999999999999999999998 7888763
No 215
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.64 E-value=0.2 Score=45.33 Aligned_cols=35 Identities=34% Similarity=0.615 Sum_probs=30.2
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
|++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999997 8999999999999996 57877743
No 216
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.64 E-value=0.21 Score=47.99 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=27.2
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|.|+|+|.+|+.++..|+..| ..+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 5999999999999999999999 457888754
No 217
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.60 E-value=0.11 Score=50.36 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCceE
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STVHI 165 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v~i 165 (340)
.||.|||+ |.+|+.+|..|+..|+ + +|.|+|-.. .+.|++.-+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~- 65 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA- 65 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence 57999998 9999999999999987 4 688887321 1234444454555544 3221
Q ss_pred EEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513 166 IEHREALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
...+. ....+.++++|+||.+.+.+
T Consensus 66 ---~~~i~-~~~~~~~~daDvVVitAG~~ 90 (323)
T TIGR01759 66 ---GVVAT-TDPEEAFKDVDAALLVGAFP 90 (323)
T ss_pred ---CcEEe-cChHHHhCCCCEEEEeCCCC
Confidence 01122 23356678999999887663
No 218
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.57 E-value=0.2 Score=45.35 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=28.5
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
|++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 67899999997 6799999999999997 576665
No 219
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.56 E-value=0.12 Score=49.75 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=28.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D 126 (340)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999998887 679999854
No 220
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.56 E-value=0.62 Score=42.08 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=61.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
|+|+|+ |.+|..++..|...|.. +.++= +. . .....+.++.. .+++.. ...-+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~---------------R~--~----~~~~~~~l~~~--g~~vv~-~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALV---------------RD--P----SSDRAQQLQAL--GAEVVE-ADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEE---------------SS--S----HHHHHHHHHHT--TTEEEE-S-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEE---------------ec--c----chhhhhhhhcc--cceEee-cccCCH
Confidence 789997 77999999999997754 44421 11 1 22233445543 455542 222245
Q ss_pred ccHHhhcccCcEEEEcCCCh---h--hHHHHHHHHHHcCCcEEEEeec
Q 019513 175 SNALEILSQYEIVVDATDNA---P--SRYMISDCCVVLGKPLVSGAAL 217 (340)
Q Consensus 175 ~~~~~~l~~~DlVi~~tD~~---~--~r~~i~~~~~~~~~p~i~~~~~ 217 (340)
+...+.+++.|.|+.++... . ....+-++|.+.|++.+--+.+
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 66778899999999999843 2 2344778999999887754433
No 221
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.55 E-value=0.2 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHc
Q 019513 94 SSILVIGAGGLGSPALLYLAAC 115 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~a 115 (340)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999765
No 222
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.53 E-value=0.32 Score=45.53 Aligned_cols=93 Identities=25% Similarity=0.262 Sum_probs=58.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|+|+|.-+-|..++..|...|..-+..+-.+ .|.... ... +. ...+...++.
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~-----------------~~~~~~-------~~~-g~--~~v~~g~l~~ 54 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS-----------------EGKHLY-------PIH-QA--LTVHTGALDP 54 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCCeEEEEEccC-----------------Cccccc-------ccc-CC--ceEEECCCCH
Confidence 79999997789999999999985444332211 111110 000 01 1122333444
Q ss_pred ccHHhhcc--cCcEEEEcCCChhhH--HHHHHHHHHcCCcEEEE
Q 019513 175 SNALEILS--QYEIVVDATDNAPSR--YMISDCCVVLGKPLVSG 214 (340)
Q Consensus 175 ~~~~~~l~--~~DlVi~~tD~~~~r--~~i~~~~~~~~~p~i~~ 214 (340)
+...+++. +.|+|||+|..++.. ..+.++|.+.++|++-.
T Consensus 55 ~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 55 QELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 44445553 489999999988864 45788999999999863
No 223
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.53 E-value=0.15 Score=46.11 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=30.2
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
++++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 367889999996 67999999999999975 8887654
No 224
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.52 E-value=0.15 Score=55.95 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=35.3
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL 133 (340)
-.+++|+|||+|..|-.+|.+|++.|. +++++|...++.-|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPF 422 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEcccccccccc
Confidence 467899999999999999999999995 599999876554443
No 225
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.52 E-value=0.085 Score=51.11 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=57.6
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-. .+.+. ...
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~-----------------~~~~~-----------------~~~ 183 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYS-----------------PRERA-----------------GVD 183 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCC-----------------chhhh-----------------ccc
Confidence 68899999999999999999999999976 44455311 00000 000
Q ss_pred ccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513 170 EALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
......+..++++.+|+|+..+- +++++.+|+..-.. .|.-+|+++
T Consensus 184 ~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 184 GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 01112346778888998776654 46678888765433 244456644
No 226
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.52 E-value=0.062 Score=54.68 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCc--ccHHHHHHHHHhh-CCCceEEEe-c
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQ--SKVKSAAATCRSI-NSTVHIIEH-R 169 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~--~Ka~~a~~~L~~l-np~v~i~~~-~ 169 (340)
++|.|||+|..|+.+|.+|+..|. +++++|.+.=....+..... .-|. .-+...++.+..+ .|++-+... +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 479999999999999999999997 68888865422111111000 0010 0122344444443 345333321 1
Q ss_pred ccCCc---ccHHhhcccCcEEEEcCCCh-hhHHHHHHHHHHcCCcEEEEeecCc
Q 019513 170 EALRT---SNALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 170 ~~~~~---~~~~~~l~~~DlVi~~tD~~-~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
..... +.....+..-|+|||++... ..-....+.+...|+.++.+.+.|.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 11111 12334456678999998763 3333445677788999998777653
No 227
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.47 E-value=0.13 Score=52.37 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=67.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh-CCCceEEEeccc-C
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI-NSTVHIIEHREA-L 172 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l-np~v~i~~~~~~-~ 172 (340)
.|.|||+|..|..+|.+|+..|. ++.++|.+.-....+...... .-+..-+...++....+ .|++-+...+.. .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~---g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAK---GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccC---CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48899999999999999999997 588888654322222111000 00001122233333333 355444333321 1
Q ss_pred Cc---ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513 173 RT---SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 173 ~~---~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
.. +.....+..=|+|||++.. +..-....+.+...++.+|.+.+.|.
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 11 1223344566899999864 34333345567788999998777653
No 228
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.46 E-value=0.29 Score=47.39 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=65.2
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceE
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHI 165 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i 165 (340)
..++.++|+|.|+ |-+|+.+++.|...|. +++.+|...-...+ ......... ...-.+
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 71 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQH------------------NLDDVRTSVSEEQWSRF 71 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchh------------------hhhhhhhccccccCCce
Confidence 4567799999996 6699999999999985 57777753211000 000000000 001123
Q ss_pred EEecccCCc-ccHHhhcccCcEEEEcCCChhh-----------------HHHHHHHHHHcCC-cEEEEeecCcee
Q 019513 166 IEHREALRT-SNALEILSQYEIVVDATDNAPS-----------------RYMISDCCVVLGK-PLVSGAALGLEG 221 (340)
Q Consensus 166 ~~~~~~~~~-~~~~~~l~~~DlVi~~tD~~~~-----------------r~~i~~~~~~~~~-p~i~~~~~g~~G 221 (340)
..+..++.. +....+++++|+||.+...... -.-+-++|++.++ .+|..++...+|
T Consensus 72 ~~~~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg 146 (348)
T PRK15181 72 IFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYG 146 (348)
T ss_pred EEEEccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhC
Confidence 444445543 3445667788888887642110 0124467888775 688777655554
No 229
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.45 E-value=0.086 Score=50.99 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=28.8
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeC
Q 019513 93 KSSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDH 125 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~ 125 (340)
-.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 358999999 9999999999999887 4 6999874
No 230
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=94.44 E-value=0.3 Score=46.77 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=60.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccC--CccccccCCCcc---Cc-ccHHHHHHHHHhhCCCceEE
Q 019513 95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNN--MHRQVIHTEPYI---GQ-SKVKSAAATCRSINSTVHII 166 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sN--L~Rq~l~~~~di---G~-~Ka~~a~~~L~~lnp~v~i~ 166 (340)
+|.|||.||-|+.++..|.+.|+. .+..+|.|.-.... ..+-++..+... |. ...+..++...+.
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~------- 74 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEES------- 74 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHHHHHHHHHHH-------
Confidence 699999999999999999999985 45678887743332 223333322110 10 0111111111110
Q ss_pred EecccCCcccHHhhcccCcEEEEc------CCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 167 EHREALRTSNALEILSQYEIVVDA------TDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~DlVi~~------tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.+...+.++++|+|+.+ |.+-.+. .+.+++++++++.+...+
T Consensus 75 -------~~~I~~~l~~~d~v~i~aglGGGTGSG~ap-~ia~~a~e~g~~~~~vvt 122 (304)
T cd02201 75 -------REEIKEALEGADMVFITAGMGGGTGTGAAP-VIAKIAKEMGALTVAVVT 122 (304)
T ss_pred -------HHHHHHHHhCCCEEEEeeccCCCcchhHHH-HHHHHHHHcCCCEEEEEe
Confidence 01234456778877765 3333333 377888898887666444
No 231
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=94.44 E-value=0.049 Score=54.66 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEE
Q 019513 257 GVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 298 (340)
Q Consensus 257 gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~ 298 (340)
-|+++++|+++|+|+||+++.+..|+.| .++||+.+++..+
T Consensus 384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n-~~i~dg~~~~s~~ 424 (425)
T cd01493 384 HNISAFMGGIAAQEVIKLITKQYVPIDN-TFIFDGIRSKSAT 424 (425)
T ss_pred chHHHHHhHHHHHHHHHHHhccccccCC-ceEEeccccceec
Confidence 5788999999999999999999999866 8889999887654
No 232
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.43 E-value=0.19 Score=51.35 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=55.6
Q ss_pred cCCcEEEEcCChhHHHHHHHHHH--cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceEEE
Q 019513 92 LKSSILVIGAGGLGSPALLYLAA--CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIE 167 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i~~ 167 (340)
..++|+|||+|..|.++|..|+. .| .+++|+|.... +-.+.|..... + .+........+.++ .+.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~gvaP--~--~~~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRSGVAP--D--HPETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEeeccCC--C--cchhHHHHHHHHHHHHHCCeEEEc
Confidence 46789999999999999999997 56 47999997653 34444432211 1 11222222222221 13444322
Q ss_pred ecccCCc-ccHHhhcccCcEEEEcCCChh
Q 019513 168 HREALRT-SNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 168 ~~~~~~~-~~~~~~l~~~DlVi~~tD~~~ 195 (340)
+..+.. -...++...||.||.++....
T Consensus 99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 99 -NVTLGRDVSLSELRDLYHVVVLAYGAES 126 (491)
T ss_pred -CEEECccccHHHHhhhCCEEEEecCCCC
Confidence 111111 133445568999999998753
No 233
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.42 E-value=0.44 Score=44.91 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.7
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D 126 (340)
+..+|.|||+|.+|..++..|... |+.-..++|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 446899999999999999999874 44323355543
No 234
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.38 E-value=0.15 Score=49.73 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=56.3
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEE-EEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLG-IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~-lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+|+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+..|.+... ....+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~-~~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL-VDLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCcccccc-CCcee
Confidence 7999999 77999999999966333444 545331 12221 12222322110 01112
Q ss_pred CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
...+..++.+++|+|+.|+.+...+.++..+ .+.|+.+|+.++
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 2112234445799999999987766665554 557899998543
No 235
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.38 E-value=0.083 Score=50.61 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..+|+|||+|++|+.+|..|+.+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 357999999999999999999999 5688887654
No 236
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.34 E-value=0.29 Score=51.73 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCCHHHHhhhhhhccCC-CCCHHH-HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC
Q 019513 64 YGLSPDMIYRYSRHLLLP-SFGVEG-QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE 141 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~-~~G~~~-q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~ 141 (340)
.+++=..++||--..... .|.... ...-..++|+|||+|..|-.+|..|++.|. +++|+|....-- -+-|.-. ..
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~G-G~l~~gi-p~ 355 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIG-GMLTFGI-PP 355 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCC-CeeeccC-Cc
Confidence 456666777775433210 121111 112257999999999999999999999997 599998553210 0111000 00
Q ss_pred CccCcccHHHHHHHHHhhCCCceEEEecccCC-cccHHhhcccCcEEEEcCCChh
Q 019513 142 PYIGQSKVKSAAATCRSINSTVHIIEHREALR-TSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 142 ~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~-~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
..+-+.-.+...+.++++. +++.... .+. .....++...||.||.++....
T Consensus 356 ~~l~~~~~~~~~~~~~~~G--v~~~~~~-~v~~~~~~~~l~~~~DaV~latGa~~ 407 (639)
T PRK12809 356 FKLDKTVLSQRREIFTAMG--IDFHLNC-EIGRDITFSDLTSEYDAVFIGVGTYG 407 (639)
T ss_pred ccCCHHHHHHHHHHHHHCC--eEEEcCC-ccCCcCCHHHHHhcCCEEEEeCCCCC
Confidence 0111111222233444443 3333221 111 1123344568999999998754
No 237
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.33 E-value=0.31 Score=48.58 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=33.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQ 136 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq 136 (340)
+|.|||+|-+|..+|..|+..|. +++++|.+.-....++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999996 588899765444444443
No 238
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.30 E-value=0.41 Score=46.17 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=28.0
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD 124 (340)
|++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5789999999999999999999999973 44433
No 239
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.24 Score=45.40 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=55.1
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+ ..+.+.+++.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 477889999986 5799999999999996 47776632 23455556666654455566666
Q ss_pred cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513 169 REALRTS-NALEI-------LSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD 192 (340)
..+++.. ....+ +...|++|.+..
T Consensus 64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 6666542 22222 246888888764
No 240
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.27 E-value=0.36 Score=45.46 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=27.7
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|.|||+|.+|..++..|...|. ++.++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999985 68888864
No 241
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.26 E-value=0.29 Score=51.35 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++. +++. . ...+..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g--~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNL----MRKY--G--YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhC--C--CeEEEeeC
Confidence 5789999999999999999999997 5899997741 2222 2222 1 22333344
Q ss_pred CcccHHh--hcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513 173 RTSNALE--ILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (340)
Q Consensus 173 ~~~~~~~--~l~~~DlVi~~tD~~~~r~~i~~~~~~~~ 208 (340)
+..+..+ -++++|+||.++|+......+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4333222 24789999999999888877777777753
No 242
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.16 Score=46.86 Aligned_cols=37 Identities=14% Similarity=0.342 Sum_probs=31.0
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.++++++|+|.|+ |++|..+++.|+..|.. +.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4678899999997 68999999999999964 7777643
No 243
>PRK13018 cell division protein FtsZ; Provisional
Probab=94.22 E-value=0.35 Score=47.79 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=32.3
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~ 127 (340)
..+.+|.|||+||.|+.++.+|...|+. .+..+|.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 4467899999999999999999999976 567888887
No 244
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.21 E-value=0.43 Score=50.56 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=60.5
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
-++++|+|.|+ |-+|+.+++.|...|=-+++.+|...- +.. ...+.-.++.+.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~-----------------------~~~~~~~~~~~~ 366 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AIS-----------------------RFLGHPRFHFVE 366 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhh-----------------------hhcCCCceEEEe
Confidence 45678999996 669999999999864235666664320 000 000111233344
Q ss_pred ccCCcc-c-HHhhcccCcEEEEcCCCh-----------------hhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513 170 EALRTS-N-ALEILSQYEIVVDATDNA-----------------PSRYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 170 ~~~~~~-~-~~~~l~~~DlVi~~tD~~-----------------~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
.+++.. . ..+.++++|+||.+.... ..-..+-++|.++++.+|+.++...+|
T Consensus 367 gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 367 GDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred ccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 455432 1 234567788888754311 111224567888888898877765555
No 245
>PLN00106 malate dehydrogenase
Probab=94.21 E-value=0.14 Score=49.52 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=31.1
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 127 (340)
...||+|+|+ |.+|+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3468999999 9999999999998887 5799998654
No 246
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.20 E-value=0.13 Score=48.05 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=47.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--C-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC---CceEEEe
Q 019513 96 ILVIGA-GGLGSPALLYLAACG--V-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS---TVHIIEH 168 (340)
Q Consensus 96 VlVvG~-GglGs~va~~La~aG--v-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp---~v~i~~~ 168 (340)
|.|||+ |.+|..++..|+..| . .+|.|+|.+. .|++..+..|+.... ..++..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~- 60 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSI- 60 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEE-
Confidence 689999 889999999999998 4 6899998543 233334444444432 233332
Q ss_pred cccCCcccHHhhcccCcEEEEcCCC
Q 019513 169 REALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
+ .+..+.++++|+||.+...
T Consensus 61 ----~-~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 61 ----T-DDPYEAFKDADVVIITAGV 80 (263)
T ss_pred ----C-CchHHHhCCCCEEEECCCC
Confidence 1 2234557899999986644
No 247
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.18 E-value=0.33 Score=44.30 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.7
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999996 7799999999999997 5777664
No 248
>PRK13529 malate dehydrogenase; Provisional
Probab=94.18 E-value=0.32 Score=50.18 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=66.1
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHH----cCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHh
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRS 158 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~----aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ 158 (340)
.+|++.+|+++|+|+.|..+|+.|.. .|+ .+|.++|.+-+=..+ | .++-..|..-+..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence 57899999999999999999999987 699 599999976431110 0 1122223222221
Q ss_pred hCCCceEEEecccCCcccHHhhcccC--cEEEEcCCC--hhhHHHHHHHHHHcCCcEEEEe
Q 019513 159 INSTVHIIEHREALRTSNALEILSQY--EIVVDATDN--APSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 159 lnp~v~i~~~~~~~~~~~~~~~l~~~--DlVi~~tD~--~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.++ . ......-...++.+.++.. |++|.++.. .-+...|...+.....|+|.+-
T Consensus 359 ~~~-~--~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 416 (563)
T PRK13529 359 REE-L--ADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPL 416 (563)
T ss_pred ccc-c--cccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 111 0 0000000112455666655 888877652 3356667777776777877643
No 249
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.17 E-value=0.56 Score=42.97 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=27.1
Q ss_pred HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 019513 88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGI 122 (340)
Q Consensus 88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~l 122 (340)
.+..+.++|+|+|+ |.+|..+++.|+..|.. ++.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 34556789999996 77999999999998854 444
No 250
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.14 E-value=0.27 Score=54.23 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=55.0
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCccc--HHHHHHHHHhhCCCceEEEec
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSK--VKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K--a~~a~~~L~~lnp~v~i~~~~ 169 (340)
.+++|+|||+|..|..+|.+|++.|. +++|+|... .++=..-+.--+.-.+| ++.-.+.++++ .+++..-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n~ 377 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKNF 377 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEeE
Confidence 58999999999999999999999996 589998542 12221111111111222 22233344444 34443211
Q ss_pred ccCC-cccHHhhcc-cCcEEEEcCCCh
Q 019513 170 EALR-TSNALEILS-QYEIVVDATDNA 194 (340)
Q Consensus 170 ~~~~-~~~~~~~l~-~~DlVi~~tD~~ 194 (340)
.+. .-...++.+ +||.||.++...
T Consensus 378 -~vG~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 378 -VVGKTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred -EeccEEeHHHhccccCCEEEEeCCCC
Confidence 111 112334444 699999999874
No 251
>PLN03139 formate dehydrogenase; Provisional
Probab=94.14 E-value=0.14 Score=50.70 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=58.0
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|.... +.+.. .+.+ + ..
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~-------------------~~~~~----~~~g--~--~~- 245 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKM-------------------DPELE----KETG--A--KF- 245 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCc-------------------chhhH----hhcC--c--ee-
Confidence 469999999999999999999999999975 555663211 00000 0110 1 00
Q ss_pred cccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHH---cCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
.++..++++.+|+|+.+. .+..++.+++..... .+.-+|+.+
T Consensus 246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 124567778899877665 456678888754332 234455543
No 252
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.14 E-value=0.13 Score=52.53 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=70.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcc---cHHHHHHHHHhh-CCCceEEEec
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQS---KVKSAAATCRSI-NSTVHIIEHR 169 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~---Ka~~a~~~L~~l-np~v~i~~~~ 169 (340)
.+|.+||+|-.|+.+|.+|+..|. ++++.|.+.=....+... ....|.. -+...++....+ .|++-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999996 588887542111111000 0000211 123334444433 2555444332
Q ss_pred ccCCc----ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc
Q 019513 170 EALRT----SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 170 ~~~~~----~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
..-.- +.+...+..=|+|||++-. +..-..+.+.+...|+.+|.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 22110 1123344567899999877 44445567788889999998777654
No 253
>PRK09330 cell division protein FtsZ; Validated
Probab=94.13 E-value=0.35 Score=47.95 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=66.7
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc--ccccCCccccccCCCcc---Cc-ccHHHHHHHHHhhCCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV--VELNNMHRQVIHTEPYI---GQ-SKVKSAAATCRSINST 162 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~--Ve~sNL~Rq~l~~~~di---G~-~Ka~~a~~~L~~lnp~ 162 (340)
....+|.|||+||-|+.++.+|...|+. .+..++.|. .+.+...+-++..+.-. |- ...+..++...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~--- 87 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEES--- 87 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHH---
Confidence 4467899999999999999999999875 567777776 33344433333322100 10 1112222111110
Q ss_pred ceEEEecccCCcccHHhhcccCcEEEEcCC------ChhhHHHHHHHHHHcCCcEEEEee
Q 019513 163 VHIIEHREALRTSNALEILSQYEIVVDATD------NAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 163 v~i~~~~~~~~~~~~~~~l~~~DlVi~~tD------~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.+...+.++++|+|+.+.. +-.+. .|.+++++++++.+...+
T Consensus 88 -----------~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVvt 135 (384)
T PRK09330 88 -----------REEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVVT 135 (384)
T ss_pred -----------HHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEEe
Confidence 0223455678998886643 22333 789999999988776554
No 254
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=94.10 E-value=0.37 Score=47.21 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=68.1
Q ss_pred HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCcc--cccCCccccccCCCc---cCc-ccHHHHHHHHHh
Q 019513 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGR--LGIVDHDVV--ELNNMHRQVIHTEPY---IGQ-SKVKSAAATCRS 158 (340)
Q Consensus 87 ~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~--i~lvD~D~V--e~sNL~Rq~l~~~~d---iG~-~Ka~~a~~~L~~ 158 (340)
.|+--.+.+|.|||.||-|+.++..|.+.|+.. +..+|.|.- +.++..+.++..+.. .|. ...+..++...+
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~aee 90 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAEE 90 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 344445578999999999999999999999864 455888763 333333333333211 111 011111111111
Q ss_pred hCCCceEEEecccCCcccHHhhcccCcEEEEcC------CChhhHHHHHHHHHHcCCcEEEEeec--CceeEE
Q 019513 159 INSTVHIIEHREALRTSNALEILSQYEIVVDAT------DNAPSRYMISDCCVVLGKPLVSGAAL--GLEGQL 223 (340)
Q Consensus 159 lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~t------D~~~~r~~i~~~~~~~~~p~i~~~~~--g~~G~i 223 (340)
. .+...+.++++|.|+.+. .+-. -..|.+++++.+++.+...+. .++|..
T Consensus 91 ~--------------~d~Ir~~le~~D~vfI~aglGGGTGSG~-apvia~~ake~~~l~vaivt~Pf~~Eg~~ 148 (349)
T TIGR00065 91 S--------------RDEIRKLLEGADMVFITAGMGGGTGTGA-APVVAKIAKELGALTVAVVTKPFKFEGLK 148 (349)
T ss_pred H--------------HHHHHHHHhCCCEEEEEEeccCccchhH-HHHHHHHHHHcCCCEEEEEeCCccccchh
Confidence 0 012334556788777653 2222 337888888888877765443 344543
No 255
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.10 E-value=0.39 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.233 Sum_probs=28.7
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+++++|+|.|+ |.+|+.+++.|+..|. ++.++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999996 6699999999999995 56666644
No 256
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.09 E-value=0.44 Score=44.79 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
..+|.+||+|.+|..++..|...|+ ..+.++|... ..+++. +.... .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~----l~~~~-g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQE----LHQKY-GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHH----HHHhc-CceEe---
Confidence 4579999999999999999999983 3344433110 011222 22111 12211
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH--cCCcEEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--LGKPLVSG 214 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~--~~~p~i~~ 214 (340)
.+..+..+++|+||.|+-+......+..+... .+..+|+.
T Consensus 57 -----~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 -----HNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred -----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 12234567789999998877777666665432 34556664
No 257
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.06 E-value=0.22 Score=50.28 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=32.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 129 (340)
+.+++|+|+|+|..|..+++.|.+.| ..+++.|.+...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44899999999999999999999999 668888866543
No 258
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.06 E-value=0.49 Score=44.57 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=54.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
+.+|.+||+|-+|..++..|...|. .+|.++|.+ ..+++ .+.+.. .+++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~----~l~~~~-g~~~--~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLK----NASDKY-GITI--T- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHH----HHHHhc-CcEE--e-
Confidence 4579999999999999999999985 246655432 11222 222211 1221 1
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~ 214 (340)
.+..+.++++|+||.|+-.......+.++.- +.+.-+|+.
T Consensus 55 -----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi 96 (272)
T PRK12491 55 -----TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTI 96 (272)
T ss_pred -----CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEe
Confidence 1223456789999999986666666666542 233446663
No 259
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.05 E-value=0.32 Score=49.40 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCCCCHHHHhhhhhhccCC-CCCHH-HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 63 DYGLSPDMIYRYSRHLLLP-SFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 63 ~~~l~~~e~~ry~Rq~~l~-~~G~~-~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..+++=..++||.-..... .|... ....-.+++|+|||+|..|..+|..|++.|.. ++|+|.+
T Consensus 109 ~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 109 FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 3467777888887443221 11111 01122568999999999999999999999975 8888854
No 260
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.18 Score=50.55 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=30.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+++++|+|+|.|++|..+|+.|+..|. ++.+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 57777744
No 261
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.02 E-value=0.44 Score=45.46 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=29.5
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 4789999999999999999999999886777654
No 262
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.97 E-value=0.07 Score=51.20 Aligned_cols=80 Identities=24% Similarity=0.310 Sum_probs=49.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc--------ccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE--------LNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve--------~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i 165 (340)
++|.|||+|-.|+-+|..++.+|+ .++++|...-. ..++.|+. .-|+.+-+.....+..+.+...+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~ 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence 689999999999999999999664 48888865211 11222222 11444444444444444433321
Q ss_pred EEecccCCcccHHhhcccCcEEEEcCC
Q 019513 166 IEHREALRTSNALEILSQYEIVVDATD 192 (340)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD 192 (340)
.-++++|+||.+.-
T Consensus 78 -------------~~l~~~DlVIEAv~ 91 (307)
T COG1250 78 -------------AALKDADLVIEAVV 91 (307)
T ss_pred -------------hHhccCCEEEEecc
Confidence 14678999998763
No 263
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.95 E-value=0.5 Score=44.12 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=24.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDH 125 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~ 125 (340)
+|+|.|+ |.+|..+++.|...|- -++.++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899996 7799999999999873 35777663
No 264
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.34 Score=44.07 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=28.8
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999996 7799999999999997 4776653
No 265
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.92 E-value=0.28 Score=41.49 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=54.4
Q ss_pred CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
++|+|.| .+|+|.++++.|+..|-.++.+++.+ .-..+.+.+...++..+ .++..+..++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence 4688898 56799999999999998888887644 11234555556666444 5566665555
Q ss_pred Ccc-cH-------HhhcccCcEEEEcCCChh
Q 019513 173 RTS-NA-------LEILSQYEIVVDATDNAP 195 (340)
Q Consensus 173 ~~~-~~-------~~~l~~~DlVi~~tD~~~ 195 (340)
+.. .. .+.....|++|.+.....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 532 11 122357889998876544
No 266
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.91 E-value=0.36 Score=46.64 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=28.9
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|+|+|++|..++..+...|+ ++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 5777764
No 267
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.33 Score=45.88 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=28.8
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 356788999996 7899999999999996 5777654
No 268
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.89 E-value=0.14 Score=49.28 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=29.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDV 127 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 127 (340)
||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6999999 9999999999999887 5799998643
No 269
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.85 E-value=0.16 Score=50.16 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=30.6
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|++++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58999999999999999999999999975 555663
No 270
>PRK07574 formate dehydrogenase; Provisional
Probab=93.83 E-value=0.22 Score=49.40 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=58.2
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||.|.+|..+|+.|...|+ ++..+|.... +.+.. ... .+ ..
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-------------------~~~~~----~~~--g~--~~- 238 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-------------------PEEVE----QEL--GL--TY- 238 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-------------------chhhH----hhc--Cc--ee-
Confidence 46899999999999999999999999997 4666653210 00000 011 11 11
Q ss_pred cccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHH---cCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
.....++++.+|+|+.+. .+..++.++++.... .+.-+|+.+
T Consensus 239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 123567788899877665 456678888754322 344466544
No 271
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.83 E-value=0.43 Score=49.49 Aligned_cols=104 Identities=17% Similarity=0.262 Sum_probs=65.6
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHH-----cCC------CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAA-----CGV------GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR 157 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~-----aGv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~ 157 (340)
++|++.+|+++|+|+.|..+|+.|+. .|+ ++|.++|.+-+-..+ | .+.+-..|..-+..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 57899999999999999999999988 477 699999976431111 0 00122233332221
Q ss_pred hhCCCceEEEecccCCcccHHhhccc--CcEEEEcCC--ChhhHHHHHHHHHHcCCcEEEEe
Q 019513 158 SINSTVHIIEHREALRTSNALEILSQ--YEIVVDATD--NAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 158 ~lnp~v~i~~~~~~~~~~~~~~~l~~--~DlVi~~tD--~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.+. ..+..+.++. .|++|.++. ..-+...|...+.....|+|.+-
T Consensus 387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 100 1345556665 788887764 23355667777766777887653
No 272
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.83 E-value=0.53 Score=47.46 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCCCHHHHhhhhhhccCCCCCHH---HHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 64 YGLSPDMIYRYSRHLLLPSFGVE---GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~~G~~---~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++-..++||--.... ..|.. ........+|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 102 ~~v~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 102 KPVSIGALERFVADWER-QHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCccHHHHHHHHHhHHH-hcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46777777777643211 01110 0122356799999999999999999999996 69999964
No 273
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.81 E-value=0.18 Score=49.38 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|.|||+|.+|..+++.|.+.|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 469999999999999999999996 56777754
No 274
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.79 E-value=0.39 Score=49.13 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=58.6
Q ss_pred cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhh--CCCceEEEe
Q 019513 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSI--NSTVHIIEH 168 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~l--np~v~i~~~ 168 (340)
+.++|+|||+|..|.++|..|+ ..|+ +++|+|....-- =+-|..... + .++.+...+.+... ++.+++. .
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaP-d---h~~~k~v~~~f~~~~~~~~v~f~-g 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAP-D---HIHVKNTYKTFDPVFLSPNYRFF-G 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCC-C---CccHHHHHHHHHHHHhhCCeEEE-e
Confidence 4678999999999999999865 5665 599998655432 222322211 1 23444555555432 3555543 2
Q ss_pred cccCCc-ccHHhhcccCcEEEEcCCCh
Q 019513 169 REALRT-SNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 169 ~~~~~~-~~~~~~l~~~DlVi~~tD~~ 194 (340)
+..+.. -...++.+.||.||.++...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 323322 23455667899999999865
No 275
>PRK12862 malic enzyme; Reviewed
Probab=93.79 E-value=0.27 Score=52.96 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=35.6
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~ 127 (340)
++|++.||+|.|+|+.|..+++.|...|+. +|.++|..-
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 229 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 229 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 578999999999999999999999999995 899999654
No 276
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.77 E-value=0.38 Score=48.53 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=60.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
+-++++|+|.|+ |-+|+.+++.|...|. ++..+|..... . + +.....+ .++.+++ +
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~----------------~-~-~~~~~~~--~~~~~~~--i 172 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG----------------R-K-ENVMHHF--SNPNFEL--I 172 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc----------------c-h-hhhhhhc--cCCceEE--E
Confidence 446688999996 6699999999999996 46666643210 0 0 0000000 1222322 2
Q ss_pred cccCCcccHHhhcccCcEEEEcCCC---------hhh--------HHHHHHHHHHcCCcEEEEeecCcee
Q 019513 169 REALRTSNALEILSQYEIVVDATDN---------APS--------RYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~---------~~~--------r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
..++.. ..+.++|+||.+... +.. -..+-++|++.++++|..++...+|
T Consensus 173 ~~D~~~----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg 238 (442)
T PLN02206 173 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238 (442)
T ss_pred ECCccC----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence 222221 234568999987642 110 0224578888888999887765554
No 277
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=93.76 E-value=0.32 Score=48.29 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CCc-
Q 019513 93 KSSILVIGA-GGLGSPALLYLAACGVGR------LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-STV- 163 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~aGvg~------i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~v- 163 (340)
-.||.|||+ |.+|+.+|..|+..|+-. |.|+|.| +-+.|++..+.-|.... |..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~ 106 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLR 106 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcC
Confidence 358999999 999999999999999843 6666544 44456666666666544 332
Q ss_pred eEEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513 164 HIIEHREALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 164 ~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
.+. +.. +..+.++++|+||.+...+
T Consensus 107 ~v~-----i~~-~~y~~~kdaDIVVitAG~p 131 (387)
T TIGR01757 107 EVS-----IGI-DPYEVFEDADWALLIGAKP 131 (387)
T ss_pred ceE-----Eec-CCHHHhCCCCEEEECCCCC
Confidence 121 111 2245678999999887664
No 278
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.76 E-value=0.42 Score=45.31 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=58.5
Q ss_pred cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
+|+|.|++| ||.++.+.|. +-..+.-.|...++ -.-.+.+.+.+++..|++-|++-..
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D----------------itd~~~v~~~i~~~~PDvVIn~AAy--- 60 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELD----------------ITDPDAVLEVIRETRPDVVINAAAY--- 60 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcccc----------------ccChHHHHHHHHhhCCCEEEECccc---
Confidence 499999887 9999999998 43445555443322 2335678888889899887764221
Q ss_pred cccHHhhcccCcEEEEcCCChhhH--------HHHHHHHHHcCCcEEEEee
Q 019513 174 TSNALEILSQYEIVVDATDNAPSR--------YMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r--------~~i~~~~~~~~~p~i~~~~ 216 (340)
.-|-.|-.+++.. ..|.++|.+.|.++|+.++
T Consensus 61 -----------t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 61 -----------TAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred -----------cccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 1111233333333 3466789999999998775
No 279
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.76 E-value=0.45 Score=44.19 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=52.3
Q ss_pred cEEEEcCChhHHHHHHHHHHcCC---CcEEEE-eCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 95 SILVIGAGGLGSPALLYLAACGV---GRLGIV-DHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGv---g~i~lv-D~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+|.+||+|.+|+.++..|...|. ..|.++ |.+ ..|++ .+.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~-------------------~~~~~----~~~~~--g~~~~---- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN-------------------PARRD----VFQSL--GVKTA---- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC-------------------HHHHH----HHHHc--CCEEe----
Confidence 69999999999999999999985 245554 211 11222 22222 22221
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHH--HcCCcEEEE
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCV--VLGKPLVSG 214 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~--~~~~p~i~~ 214 (340)
.+..+.++++|+||.|+.....+..+..... ..+..+|+.
T Consensus 53 ----~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 53 ----ASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSV 94 (266)
T ss_pred ----CChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEe
Confidence 1223456789999999976555666655532 234456653
No 280
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=93.72 E-value=0.77 Score=42.79 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=61.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
..+|+|+|--+=|..++..|...|+.-+.-+-.+ .|.++ ...+..+...+
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~-----------------~g~~~-------------~~~~~v~~G~l 51 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGR-----------------TGGPA-------------DLPGPVRVGGF 51 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccC-----------------CCCcc-------------cCCceEEECCC
Confidence 3579999988889999999999987544333222 22200 11223334445
Q ss_pred -CcccHHhhc--ccCcEEEEcCCChhhHH--HHHHHHHHcCCcEEEE
Q 019513 173 -RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVSG 214 (340)
Q Consensus 173 -~~~~~~~~l--~~~DlVi~~tD~~~~r~--~i~~~~~~~~~p~i~~ 214 (340)
+.+...+++ .+.++|||+|..++... .+.++|.+.++|++--
T Consensus 52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 444555555 36899999999988654 4889999999999863
No 281
>PRK07478 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.38 Score=43.84 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=50.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++++|.|+ ||+|..+++.|+..|. ++.+++.+. .+.+.+.+.+++.+.. +..+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~ 60 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQ-------------------AELDQLVAEIRAEGGE--AVAL 60 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCc--EEEE
Confidence 467789999986 5799999999999997 577765421 2455555566655433 3344
Q ss_pred cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513 169 REALRTS-NALEI-------LSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD 192 (340)
..+++.. ....+ +...|+||.+..
T Consensus 61 ~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 61 AGDVRDEAYAKALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4444432 11111 235788887764
No 282
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.54 Score=44.31 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=29.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999996 6799999999999997 5777764
No 283
>PRK09186 flagellin modification protein A; Provisional
Probab=93.65 E-value=0.29 Score=44.49 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.2
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
+++++|+|.|+ |++|..+++.|+..|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 46789999997 67999999999999964 66554
No 284
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.46 Score=43.50 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=30.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 367889999997 6799999999999998 78887643
No 285
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.64 E-value=0.26 Score=42.90 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=29.4
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
..|..++|+|+|.|-+|..+|..|...| -+++++|-|.+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 3577899999999999999999999999 56888887763
No 286
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.61 E-value=0.11 Score=46.05 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=47.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH-HHHHHhhCCCceEEEecccC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA-AATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a-~~~L~~lnp~v~i~~~~~~~ 172 (340)
.+|.|+|+|=+|.+.|..||..| -++.-+|.|.-....+++-..+.. .+-.+.+ ++.++. -++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~~v~~l~~g~~p~~----E~~l~~ll~~~~~~----~~l~~----- 66 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEEKVEALNNGELPIY----EPGLDELLKENVSA----GRLRA----- 66 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S-HHHHHHHHTTSSSS-----CTTHHHHHHHHHHT----TSEEE-----
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEeCChHHHHHHhhcccccc----ccchhhhhcccccc----ccchh-----
Confidence 37999999999999999999999 557888988766666666544332 2222222 222221 11111
Q ss_pred CcccHHhhcccCcEEEEcCCChh
Q 019513 173 RTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
..+..+.++++|+++.|..++.
T Consensus 67 -t~~~~~ai~~adv~~I~VpTP~ 88 (185)
T PF03721_consen 67 -TTDIEEAIKDADVVFICVPTPS 88 (185)
T ss_dssp -ESEHHHHHHH-SEEEE----EB
T ss_pred -hhhhhhhhhccceEEEecCCCc
Confidence 1234455788999999987654
No 287
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.58 E-value=0.44 Score=43.37 Aligned_cols=35 Identities=37% Similarity=0.525 Sum_probs=29.3
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 366789999997 7799999999999997 4777664
No 288
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.57 E-value=0.44 Score=46.40 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=29.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3578999999999999998888999987877763
No 289
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.56 Score=47.12 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=55.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+..|+|+|.|+.|-.+|+.|...|. +++..|... .. ...+.|++.++.+.+..- ..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~-------------------~~--~~~~~l~~~~~g~~~~~~--~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSRE-------------------QP--PGLDTLAREFPDVELRCG--GF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCC-------------------Cc--hhHHHHHhhcCCcEEEeC--CC
Confidence 4679999999999999999999996 588877432 00 011234443445544321 11
Q ss_pred CcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 173 RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
. .+.+.++|+||....-++.... -..+++.++|+++
T Consensus 62 ~----~~~~~~~d~vV~sp~i~~~~p~-~~~a~~~~i~i~~ 97 (448)
T PRK03803 62 D----CELLVQASEIIISPGLALDTPA-LRAAAAMGIEVIG 97 (448)
T ss_pred C----hHHhcCCCEEEECCCCCCCCHH-HHHHHHCCCcEEE
Confidence 1 2335678999877654433332 3345666777665
No 290
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.57 E-value=0.52 Score=43.65 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999996 7799999999999997 57777643
No 291
>PRK06194 hypothetical protein; Provisional
Probab=93.55 E-value=0.39 Score=44.61 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=29.0
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999985 6799999999999996 5777764
No 292
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.54 E-value=0.59 Score=43.85 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=23.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEe
Q 019513 94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVD 124 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD 124 (340)
.||.|+|+|.+|..+++.|... ++.-..+++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~ 33 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIV 33 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEE
Confidence 3799999999999999999875 443334443
No 293
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.47 Score=42.93 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.2
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 67889999997 5799999999999995 5776653
No 294
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.39 Score=43.83 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=31.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 477899999996 6799999999999998778887754
No 295
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.51 E-value=0.6 Score=47.68 Aligned_cols=89 Identities=24% Similarity=0.353 Sum_probs=56.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
.+++|+|+|+|..|..+++.|...|. ++++.|... .+ . +.+++. .+.+. ..
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~---~-~~l~~~--g~~~~--~~- 61 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA---L-RPHAER--GVATV--ST- 61 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH---H-HHHHhC--CCEEE--cC-
Confidence 57899999999999999999999995 677777321 01 1 123332 23322 11
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
....+.++++|+||.+..-+.... +-..+++.|+|+++
T Consensus 62 ---~~~~~~l~~~D~VV~SpGi~~~~p-~~~~a~~~gi~v~~ 99 (488)
T PRK03369 62 ---SDAVQQIADYALVVTSPGFRPTAP-VLAAAAAAGVPIWG 99 (488)
T ss_pred ---cchHhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEee
Confidence 111234567899998877555433 34455677777774
No 296
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.4 Score=43.26 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=49.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+|.|+ |++|..+++.|+..|.. +.+++.+ ..+.+...+.++.... ++..+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~ 61 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGL-------------------AAEARELAAALEAAGG--RAHAI 61 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence 366789999996 78999999999999964 5555422 2233444445544433 34444
Q ss_pred cccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513 169 REALRTS-NALEI-------LSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~~-~~~~~-------l~~~DlVi~~tD 192 (340)
..+++.. ....+ +.+.|+||.+..
T Consensus 62 ~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 62 AADLADPASVQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4444432 22222 246788888765
No 297
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.45 E-value=0.41 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHcccCCcEEEEcCChhHHHHHHHHHHcCCCcE
Q 019513 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRL 120 (340)
Q Consensus 88 q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i 120 (340)
...|++++|+|||+|..|..-|.+|--+|+..+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 478999999999999999999999999998644
No 298
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.45 E-value=0.37 Score=47.57 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+...+|+|||. |.+|..+++.|....-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45678999999 999999999999753345777775
No 299
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.62 Score=42.16 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=52.9
Q ss_pred CCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 93 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
+++|+|.| .|++|..+++.|+..|. ++.+++.+. .+.+.+...+.+.+|...+..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56789998 56799999999999995 677776431 2334455566666777777777666
Q ss_pred CCccc-HH-------hhcccCcEEEEcC
Q 019513 172 LRTSN-AL-------EILSQYEIVVDAT 191 (340)
Q Consensus 172 ~~~~~-~~-------~~l~~~DlVi~~t 191 (340)
++... .. +.+...|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 66432 11 1234578888775
No 300
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.36 E-value=0.26 Score=49.23 Aligned_cols=89 Identities=17% Similarity=0.273 Sum_probs=58.1
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|... .... ..+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~-------------~~~~----------------~~~~---- 192 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED-------------KLPL----------------GNAR---- 192 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc-------------cccc----------------CCce----
Confidence 46999999999999999999999999997 466666310 0000 0000
Q ss_pred cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
......++++.+|+|+.+.- +..++.++++..... +.-+|+.+
T Consensus 193 ----~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 193 ----QVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred ----ecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 01245678888998776654 466888887654332 34456544
No 301
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.35 E-value=0.61 Score=47.76 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999997 68888864
No 302
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.34 E-value=0.43 Score=45.09 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRT 174 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~ 174 (340)
+|.|||+|.+|+.++..|+..|. +++++|.+.-....+. ..|...+....+.++ +.++-+...+....-
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~--------~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELL--------AAGAVTAETARQVTE--QADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HCCCcccCCHHHHHh--cCCEEEEecCCHHHH
Confidence 58999999999999999999995 6888876532111111 112222222222222 234444433321110
Q ss_pred -------ccHHhhcccCcEEEEcCCChh-hHHHHHHHHHHcCCcEEEEeec
Q 019513 175 -------SNALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAAL 217 (340)
Q Consensus 175 -------~~~~~~l~~~DlVi~~tD~~~-~r~~i~~~~~~~~~p~i~~~~~ 217 (340)
+.....+..-.+||+++...+ ....+.+.+...+..|+++-..
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~ 120 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC
Confidence 001112233457777654433 3345666677778888875444
No 303
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.34 E-value=0.49 Score=44.69 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=52.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
||+|+|+ |-+|+.+...|...|..-+.+ +.. ++.....+.+.+.+.+..|++-|+.-.. +
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~--~ 62 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAY--T 62 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT----------------CS-TTSHHHHHHHHHHH--SEEEE-------
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch----------------hcCCCCHHHHHHHHHHhCCCeEecccee--e
Confidence 7999996 559999999999877543332 322 2222345677777777766654443211 0
Q ss_pred cccHHhhcccCcEEEEcCCChh--------hHHHHHHHHHHcCCcEEEEeecC
Q 019513 174 TSNALEILSQYEIVVDATDNAP--------SRYMISDCCVVLGKPLVSGAALG 218 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~--------~r~~i~~~~~~~~~p~i~~~~~g 218 (340)
.-+ . |-.++. .-..|.++|...+.++|+.++..
T Consensus 63 ~~~---~---------ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~ 103 (286)
T PF04321_consen 63 NVD---A---------CEKNPEEAYAINVDATKNLAEACKERGARLIHISTDY 103 (286)
T ss_dssp -HH---H---------HHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred cHH---h---------hhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence 000 0 001122 22346788999999999987754
No 304
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=93.27 E-value=0.67 Score=42.27 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
+++|+|.|+ |++|..+++.|+..|. ++.++|.+. .+.+...+.+...++..++..+..+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINS-------------------EKAANVAQEINAEYGEGMAYGFGAD 61 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhcCCceeEEEEcc
Confidence 467999987 4699999999999996 677777432 1233344455544433345555555
Q ss_pred CCcc-cHH-------hhcccCcEEEEcCC
Q 019513 172 LRTS-NAL-------EILSQYEIVVDATD 192 (340)
Q Consensus 172 ~~~~-~~~-------~~l~~~DlVi~~tD 192 (340)
++.. ... +.+...|+||.+..
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 62 ATSEQSVLALSRGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5532 111 12245788887764
No 305
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.27 E-value=0.27 Score=47.06 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=56.4
Q ss_pred HcccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 89 SNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 89 ~~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
-.|++++|+|||.| -+|.+++.+|...|. .+++++..+
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t---------------------------------------- 193 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS---------------------------------------- 193 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC----------------------------------------
Confidence 36899999999997 689999999999995 577764221
Q ss_pred ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (340)
.+..+..+.+|+||.++..+. .+...-.+.|.-+|+.+..
T Consensus 194 -------~~l~e~~~~ADIVIsavg~~~---~v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 194 -------TDAKALCRQADIVVAAVGRPR---LIDADWLKPGAVVIDVGIN 233 (301)
T ss_pred -------CCHHHHHhcCCEEEEecCChh---cccHhhccCCcEEEEeccc
Confidence 134556678999999988764 3333335666777776643
No 306
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.25 E-value=0.51 Score=43.15 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=30.0
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 4578899999995 7799999999999997 5777664
No 307
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.24 E-value=0.64 Score=48.23 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
+.||+|+|+|.+|..+++.|...|. .+.++|.|. .|++.+ ++. + +.++..+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~-------------------~~~~~~----~~~--g--~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR-------------------TRVDEL----RER--G--IRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHH----HHC--C--CeEEEcCC
Confidence 5789999999999999999999996 589999764 123333 222 1 33344444
Q ss_pred CcccHHh--hcccCcEEEEcCCChhhH
Q 019513 173 RTSNALE--ILSQYEIVVDATDNAPSR 197 (340)
Q Consensus 173 ~~~~~~~--~l~~~DlVi~~tD~~~~r 197 (340)
++.+..+ -++++|.|+.++++....
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHH
Confidence 4433322 346899887777665443
No 308
>PLN02780 ketoreductase/ oxidoreductase
Probab=93.23 E-value=0.55 Score=45.10 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=44.3
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.++.|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .|.+.+++.+++.++..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 4678999996 5799999999999997 588876431 355666677776666556655554
Q ss_pred cCC
Q 019513 171 ALR 173 (340)
Q Consensus 171 ~~~ 173 (340)
+++
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 444
No 309
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.21 E-value=0.13 Score=49.69 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=28.8
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGR------LGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~------i~lvD~D 126 (340)
.||+|+|+ |.+|+.++..|+..|+-. |.|+|.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988754 9999864
No 310
>PRK05442 malate dehydrogenase; Provisional
Probab=93.19 E-value=0.23 Score=48.16 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=28.3
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGv-g-----~i~lvD~ 125 (340)
.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999998887 4 6999884
No 311
>PLN02928 oxidoreductase family protein
Probab=93.18 E-value=0.1 Score=50.98 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=61.3
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-. . +.. ....|.+ .+.+....
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~-~-----~~~---~~~~~~~------------~~~~~~~~- 211 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW-T-----SEP---EDGLLIP------------NGDVDDLV- 211 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C-----hhh---hhhhccc------------cccccccc-
Confidence 46999999999999999999999999997 677766420 0 000 0000000 00000000
Q ss_pred cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHH---cCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
..........++++.+|+|+.+.- +..++.+|++.... .+.-+|+.+
T Consensus 212 ~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 212 DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 000123456788899999888764 46678888764433 244466644
No 312
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.18 E-value=0.78 Score=44.74 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.9
Q ss_pred HhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 178 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 178 ~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
.+++.++|+|++||.....+. ....+.+.|+++|+.+.
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAK-NKELYEKAGVKAIFQGG 110 (341)
T ss_pred hHhhccCCEEEECCCchhhHH-HHHHHHHCCCEEEEcCC
Confidence 445578999999998765554 44577778899887554
No 313
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.42 Score=46.20 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=29.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467889999998 6799999999999996 4777664
No 314
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.14 E-value=0.32 Score=45.73 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=63.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEE---EEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLG---IVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~---lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.||.|||+|.+|..++..|..-+...+. +.|.+.-.. +.+ .+..++-.--+.|....|++-|++-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~----~~~------~~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP----PAL------AGRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH----HHh------hccCcccCCHHHHhhcCCCEEEECCCH
Confidence 5899999999999999998765433233 233221000 000 111221111233334567776665544
Q ss_pred cCCcccHHhhcc-cCcEEEEcCCChh---hHHHHHHHHHHcCCcEE
Q 019513 171 ALRTSNALEILS-QYEIVVDATDNAP---SRYMISDCCVVLGKPLV 212 (340)
Q Consensus 171 ~~~~~~~~~~l~-~~DlVi~~tD~~~---~r~~i~~~~~~~~~p~i 212 (340)
..-.+....+++ +.|+|+..+.-+. .+..+.+.|++.+..+.
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ 118 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIR 118 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEE
Confidence 444455666775 7899988766554 45567788888775543
No 315
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.11 E-value=0.78 Score=46.54 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=41.8
Q ss_pred CCCCHHHHhhhhhhccCC-CC-CHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 64 YGLSPDMIYRYSRHLLLP-SF-GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~-~~-G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++=..++||.-..... .| .......-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 456667777876433210 01 1110112245789999999999999999999997 59999864
No 316
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.10 E-value=0.61 Score=45.13 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=29.4
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999999999999888999887877764
No 317
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.53 Score=43.08 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=47.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
++|+|.|+ |++|..+++.|+..|. +++++|.+. .+.+.+.+.+..... .+..+..++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~~Dl 59 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNE-------------------TRLASLAQELADHGG--EALVVPTDV 59 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEEEEccC
Confidence 57899997 7799999999999996 677776431 234444555555443 333344444
Q ss_pred Cc-ccHHhh-------cccCcEEEEcCC
Q 019513 173 RT-SNALEI-------LSQYEIVVDATD 192 (340)
Q Consensus 173 ~~-~~~~~~-------l~~~DlVi~~tD 192 (340)
.. +....+ +.+.|+||.+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~id~vi~~ag 87 (263)
T PRK06181 60 SDAEACERLIEAAVARFGGIDILVNNAG 87 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 43 222222 235788888864
No 318
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.52 Score=43.55 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.3
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
|+++.++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67788999987 5799999999999996 57777643
No 319
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.08 E-value=0.4 Score=51.45 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=35.5
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~ 127 (340)
++|.+.||++.|+|..|..+++.|...|+. +|.++|..-
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G 221 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 221 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence 578999999999999999999999999995 899999654
No 320
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.06 E-value=0.42 Score=45.20 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=24.7
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+|+|.|+ |-+|+.+++.|...| +++.+|.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~ 31 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDV 31 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence 6999997 679999999999888 5777774
No 321
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.05 E-value=1.4 Score=44.34 Aligned_cols=36 Identities=36% Similarity=0.488 Sum_probs=30.4
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.++++++|+|.|+ |.+|+.+++.|+..|. ++.++|.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 4677788999996 7799999999999995 5888884
No 322
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.05 E-value=0.6 Score=36.76 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHhhCCCceEEEe--cccCCccc--HHhhcccCcEEEEcCCChh--hHHHHHHHHHHcCCcEEEEeecCc
Q 019513 147 SKVKSAAATCRSINSTVHIIEH--REALRTSN--ALEILSQYEIVVDATDNAP--SRYMISDCCVVLGKPLVSGAALGL 219 (340)
Q Consensus 147 ~Ka~~a~~~L~~lnp~v~i~~~--~~~~~~~~--~~~~l~~~DlVi~~tD~~~--~r~~i~~~~~~~~~p~i~~~~~g~ 219 (340)
......++.+++.+ .+...+ +....... ....+++.|+||..||... ..+.+.+.|.+.++|++.....|+
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 55666777777754 455555 34444433 6778899999999999754 566789999999999998765443
No 323
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.04 E-value=0.3 Score=47.30 Aligned_cols=91 Identities=5% Similarity=0.076 Sum_probs=55.6
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
..|.+++|.|||.|.+|..+|+.|. ..|+ ++...|.-. +.+.. ... .++
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~--------------------~~~~~----~~~--~~~--- 190 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH--------------------HKEAE----ERF--NAR--- 190 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC--------------------chhhH----Hhc--CcE---
Confidence 3699999999999999999999987 5665 344443210 00000 000 111
Q ss_pred ecccCCcccHHhhcccCcEEEEcC-CChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 168 HREALRTSNALEILSQYEIVVDAT-DNAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~t-D~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
.....++++.+|+|+.+. -++.++.+|++..... +.-+|+.+
T Consensus 191 ------~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 191 ------YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred ------ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 123567788899877654 5577888887654432 33456543
No 324
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.04 E-value=1.2 Score=41.80 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=32.9
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
..|++++|+|.|.|.+|+.+|+.|...|..-+.+-|.
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999999999999999999877767774
No 325
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.03 E-value=0.13 Score=49.39 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.2
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D 126 (340)
.+|.|+|+ |.+|+.++..|+..|+. ++.++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 37999998 99999999999999974 79999963
No 326
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=93.03 E-value=0.16 Score=50.06 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=34.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCcc
Q 019513 93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR 135 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~R 135 (340)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-...-.|
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 45799999999999999999984 87789999988764433333
No 327
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.99 E-value=0.57 Score=42.57 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=29.3
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999985 5699999999999996 6888764
No 328
>PRK06436 glycerate dehydrogenase; Provisional
Probab=92.98 E-value=0.11 Score=49.85 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=33.6
Q ss_pred CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 83 ~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|.......|.+++|.|+|.|.+|.++|+.|...|. ++..+|.
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 43333357999999999999999999998888887 5667764
No 329
>PRK12861 malic enzyme; Reviewed
Probab=92.98 E-value=0.4 Score=51.44 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=35.7
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~ 127 (340)
++|++.||++.|+|+.|..+++.|...|+. +|.++|..-
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~G 225 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEG 225 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCC
Confidence 578999999999999999999999999996 899999554
No 330
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.94 E-value=0.67 Score=43.19 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=52.6
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+.+|.|||+|-+|+.++..|...|+ .++.++|.+.- ..+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~--------------~~~-------------------~~~- 47 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK--------------NTP-------------------FVY- 47 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh--------------cCC-------------------eEE-
Confidence 34579999999999999999999884 23666554220 000 011
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHH-cCCcEEE
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-LGKPLVS 213 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~-~~~p~i~ 213 (340)
. .+..+.++++|+||.|+.....+..+.++... .+..+|+
T Consensus 48 ----~-~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS 88 (260)
T PTZ00431 48 ----L-QSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLIS 88 (260)
T ss_pred ----e-CChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEE
Confidence 0 11233456789999998877777777765432 2344555
No 331
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.90 E-value=0.16 Score=49.36 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=36.9
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQ 136 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq 136 (340)
...+|+|||+|-+|..+|.+|++.|. +++++|.+.+...+-.|.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~ 46 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN 46 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence 46789999999999999999999998 999999888754444333
No 332
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.89 E-value=0.58 Score=52.06 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=55.3
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
++++|+|||+|..|..+|.+|++.|. +++|+|....--.-+...+ .....++.-++...+.++++ .+++..-. .
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gi--p~~rl~~e~~~~~~~~l~~~--Gv~~~~~~-~ 502 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGI--PSFRLPRDIIDREVQRLVDI--GVKIETNK-V 502 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccC--CccCCCHHHHHHHHHHHHHC--CCEEEeCC-c
Confidence 46799999999999999999999996 6999986532111111111 11112222233344455554 35543321 1
Q ss_pred CCcc-cHHhhc--ccCcEEEEcCCCh
Q 019513 172 LRTS-NALEIL--SQYEIVVDATDNA 194 (340)
Q Consensus 172 ~~~~-~~~~~l--~~~DlVi~~tD~~ 194 (340)
+..+ ...++. .+||-||.+|...
T Consensus 503 vg~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 503 IGKTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred cCCccCHHHHhhccCCCEEEEecCCC
Confidence 1111 223333 3699999999873
No 333
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.89 E-value=0.42 Score=48.25 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.2
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.|++++|+|.|.|-+|+.+|+.|...|..-+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 5899999999999999999999999998877777743
No 334
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=92.84 E-value=0.72 Score=43.89 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC-
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR- 173 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~- 173 (340)
+|.+||+|-+|..++.+|...|. +++++|.+. +. ..+. ..|-..+....+.++ ..++-+...+....
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence 59999999999999999999996 677887543 11 1111 233333333333322 23444433332200
Q ss_pred ------cccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513 174 ------TSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (340)
Q Consensus 174 ------~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~ 227 (340)
+......+..-.+|||++-. +.+-..+.+.+...|..++++-..|. .|.+.++.
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMV 135 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEE
Confidence 00011112334578887655 44555688888888999988654432 46665554
No 335
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.61 Score=42.88 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=29.6
Q ss_pred ccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D 126 (340)
+++++|+|.|++ ++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 678899999966 599999999999997 78777653
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=92.83 E-value=0.52 Score=49.32 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=30.7
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+.++|+|||+|..|..+|..|.+.|+ +++|+|.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 56789999999999999999999997 588887554
No 337
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.81 E-value=1.2 Score=44.10 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=26.9
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
-+..+|+|+|+ |.+|+.+++.|...|. ++.+++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 34568999997 6699999999999995 4666654
No 338
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.81 E-value=0.56 Score=42.15 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=26.1
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcE
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRL 120 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i 120 (340)
.|.+++|+|+|+ |++|..+++.|+..|...+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~ 33 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVV 33 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 467789999996 7899999999999997533
No 339
>PRK06392 homoserine dehydrogenase; Provisional
Probab=92.80 E-value=0.74 Score=44.65 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.9
Q ss_pred cEEEEcCChhHHHHHHHHHH
Q 019513 95 SILVIGAGGLGSPALLYLAA 114 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~ 114 (340)
+|+|+|+|.+|+.+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999987
No 340
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.79 E-value=1.1 Score=40.71 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=57.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.++.|+|.|-+|+.++..|+.+|. +++|-- .=+..+.+++++ .+.|. ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs------------------~r~~~~~~a~a~---~l~~~---------i~ 50 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGS------------------SRGPKALAAAAA---ALGPL---------IT 50 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC-eEEEec------------------CCChhHHHHHHH---hhccc---------cc
Confidence 468999999999999999999993 344311 111223333333 33333 23
Q ss_pred cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEEEe
Q 019513 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGA 215 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~~~ 215 (340)
.....+-.+..|+||.++--......+.++.-.. ++-+|+..
T Consensus 51 ~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 51 GGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred cCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 3334555678999999988766666666666545 47777754
No 341
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.79 E-value=0.61 Score=45.68 Aligned_cols=33 Identities=30% Similarity=0.185 Sum_probs=27.6
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
++++|+|.|+ |-+|+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999997 6699999999999984 5777774
No 342
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.75 E-value=0.65 Score=46.49 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
-.+|.|||+|-+|.++|..|+..| -+++.+|.|.-
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHH
Confidence 367999999999999999999999 46888886553
No 343
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.73 E-value=0.58 Score=37.86 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=47.1
Q ss_pred cCChhHHHHHHHHHHc----CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCCcc
Q 019513 100 GAGGLGSPALLYLAAC----GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALRTS 175 (340)
Q Consensus 100 G~GglGs~va~~La~a----Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~~~ 175 (340)
|+|.+|+.+++.|... ++.-..|.|.+.. ... + ...... ... ...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~----------~~~-~-----------~~~~~~-~~~--------~~~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSML----------ISK-D-----------WAASFP-DEA--------FTT 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEE----------EET-T-----------HHHHHT-HSC--------EES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCch----------hhh-h-----------hhhhcc-ccc--------ccC
Confidence 8999999999999976 4555666664410 000 0 111111 111 113
Q ss_pred cHHhhcc--cCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEee
Q 019513 176 NALEILS--QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 216 (340)
Q Consensus 176 ~~~~~l~--~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~ 216 (340)
+..+++. +.|+||+|+.......++ ..+.+.|+.+|.++.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~-~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYY-EKALERGKHVVTANK 91 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHH-HHHHHTTCEEEES-H
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHH-HHHHHCCCeEEEECH
Confidence 3455555 799999998775554433 456778999998653
No 344
>PLN02214 cinnamoyl-CoA reductase
Probab=92.73 E-value=1.3 Score=42.73 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=59.6
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
+++++|+|.|+ |.+|+.+++.|...|. ++..++.+. ++ .+. .....+....+ .+..+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~--------------~~~-~~~~~~~~~~~--~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DD--------------PKN-THLRELEGGKE--RLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hh--------------hhH-HHHHHhhCCCC--cEEEEe
Confidence 46788999998 7799999999999995 455544321 00 000 01111111111 234444
Q ss_pred ccCCc-ccHHhhcccCcEEEEcCCCh----h--------hHHHHHHHHHHcCC-cEEEEee
Q 019513 170 EALRT-SNALEILSQYEIVVDATDNA----P--------SRYMISDCCVVLGK-PLVSGAA 216 (340)
Q Consensus 170 ~~~~~-~~~~~~l~~~DlVi~~tD~~----~--------~r~~i~~~~~~~~~-p~i~~~~ 216 (340)
.+++. +...+.++++|+||.+.... . .-..+-++|.+.++ .+|..++
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 44543 34456678899999886421 1 11234567777775 4776554
No 345
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.73 E-value=0.28 Score=46.95 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=47.5
Q ss_pred EEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCC----CceEEEecccC
Q 019513 98 VIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINS----TVHIIEHREAL 172 (340)
Q Consensus 98 VvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp----~v~i~~~~~~~ 172 (340)
|||+|.+|+.+|..|+..|+ .+|.|+|- -..|++..+.-|....+ ++++..
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~----- 56 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS----- 56 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec-----
Confidence 68999999999999999997 57999974 22345555555555432 233321
Q ss_pred CcccHHhhcccCcEEEEcCCC
Q 019513 173 RTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~ 193 (340)
...+.++++|+||.+...
T Consensus 57 ---~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 57 ---GDYSDCKDADLVVITAGA 74 (299)
T ss_pred ---CCHHHHCCCCEEEECCCC
Confidence 114567899999987765
No 346
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.70 E-value=0.14 Score=45.16 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+|.|||+|.+|..+|..++++|. +++++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 69999999999999999999994 599999755
No 347
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=92.69 E-value=0.75 Score=48.73 Aligned_cols=63 Identities=22% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCCCHHHHhhhhhhccCC-CCCH-HHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 64 YGLSPDMIYRYSRHLLLP-SFGV-EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~-~~G~-~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.+++-..++||....... .+.. .....-..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 162 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 162 EPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 456667778886532110 0110 00112245799999999999999999999996 599998653
No 348
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.69 E-value=0.62 Score=47.30 Aligned_cols=36 Identities=19% Similarity=0.031 Sum_probs=30.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+++++|+|+|+|--|..+++.|...|.. +++.|.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence 4678999999999999999999999976 77777543
No 349
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.68 E-value=0.64 Score=41.96 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=28.0
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|++++|+|.|+ |++|+.+++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 56889999995 6699999999999986 4666653
No 350
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.75 Score=41.57 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=29.7
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356789999997 8899999999999995 57777643
No 351
>PRK06914 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.78 Score=42.42 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=26.8
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4567899985 6799999999999996 46666543
No 352
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.68 E-value=0.36 Score=46.79 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=55.5
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
..+.+++|.|+|.|.+|..+|+.+. |+| +|...|... + ++.+. +.+
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~--------~----------~~~~~------~~~------- 188 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSP--------N----------PEAEK------ELG------- 188 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCC--------C----------hHHHh------hcC-------
Confidence 4689999999999999999999999 554 344433221 0 00000 000
Q ss_pred ecccCCcccHHhhcccCcEE-EEcCCChhhHHHHHHHHHHcC---CcEEEE
Q 019513 168 HREALRTSNALEILSQYEIV-VDATDNAPSRYMISDCCVVLG---KPLVSG 214 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlV-i~~tD~~~~r~~i~~~~~~~~---~p~i~~ 214 (340)
...-...++++.+|+| +.|-.+..++.+||..-.+.= .-+|+.
T Consensus 189 ----~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 189 ----ARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred ----ceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence 0111156778889965 456677889999997665543 335554
No 353
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.66 E-value=0.77 Score=43.19 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+|.|+ |.+|+.+++.|+..|. ++.++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899986 7799999999999995 67777754
No 354
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.64 E-value=0.15 Score=52.44 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
-++|.|||+|..|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999995 47888754
No 355
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.64 E-value=0.76 Score=46.29 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=27.4
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+..+|+|.|+ |-+|+.+++.|...|. ++..+|.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4568999996 5599999999999985 57777754
No 356
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.60 E-value=0.44 Score=52.76 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.6
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
-.+++|+|||+|..|..+|.+|++.|. +++|+|...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 356899999999999999999999996 699998643
No 357
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.59 E-value=0.16 Score=49.23 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998754
No 358
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.59 E-value=1.9 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=25.5
Q ss_pred cCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 92 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
.+.+|+|.|+ |.+|+.+++.|+..|. ++.+++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 3568999995 6799999999999986 455544
No 359
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.59 E-value=0.45 Score=47.78 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=51.5
Q ss_pred cEEEEcCChhHHHHHH--HHH---HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHH----HHHHHhhCCCceE
Q 019513 95 SILVIGAGGLGSPALL--YLA---ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSA----AATCRSINSTVHI 165 (340)
Q Consensus 95 ~VlVvG~GglGs~va~--~La---~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a----~~~L~~lnp~v~i 165 (340)
+|.|||+|++|...+. .|+ .....++.|+|.|. .+.+.. .+.+....+..++
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~-------------------e~l~~~~~~~~~~~~~~~~~~~I 62 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE-------------------ERLETVEILAKKIVEELGAPLKI 62 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeEE
Confidence 6999999999987665 454 22225899998553 112222 2333333333444
Q ss_pred EEecccCCcccHHhhcccCcEEEEcCCChhhHHHHH--HHHHHcCC
Q 019513 166 IEHREALRTSNALEILSQYEIVVDATDNAPSRYMIS--DCCVVLGK 209 (340)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~--~~~~~~~~ 209 (340)
... .+..+.++++|+||.+.-....+.... +...++++
T Consensus 63 ~~t------tD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~ 102 (423)
T cd05297 63 EAT------TDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGY 102 (423)
T ss_pred EEe------CCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCe
Confidence 321 234566789999999876533333333 25555554
No 360
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.55 E-value=0.51 Score=47.09 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=29.7
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+.++|+|+|.|+.|..+|+.|...|. +++.+|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999999999999999999996 58888854
No 361
>PLN02253 xanthoxin dehydrogenase
Probab=92.55 E-value=0.81 Score=42.37 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=28.7
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467788999985 6799999999999995 5777764
No 362
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.54 E-value=0.8 Score=46.14 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 46789999999999999999999995 68998854
No 363
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.53 E-value=0.5 Score=43.85 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+|+|||+|..|.++|..|.+.|.. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999975 99999654
No 364
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.53 E-value=0.85 Score=42.94 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=60.2
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
++.++++|-|+ +|+|-++|+.|++-|. ++.||-.+ +.|-+.+++.|+... .++++.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~-------------------~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARR-------------------EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHHHhh-CceEEEEE
Confidence 56789999996 5799999999999995 46665422 357788888998887 78888888
Q ss_pred ccCCcccHHhhc--------ccCcEEEEcCC
Q 019513 170 EALRTSNALEIL--------SQYEIVVDATD 192 (340)
Q Consensus 170 ~~~~~~~~~~~l--------~~~DlVi~~tD 192 (340)
.+++..+..+.+ -..|++|++..
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 888754332221 15888888754
No 365
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.53 E-value=0.78 Score=42.27 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=28.7
Q ss_pred cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD 124 (340)
.++++.++|.|+ +|+|.++|+.|++.|. ++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 367789999998 5999999999999996 566665
No 366
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.53 E-value=0.16 Score=52.54 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.1
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|+|+|+||+|..++..|+..|+ ++.+++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 667899999999999999999999999 8998864
No 367
>PRK06046 alanine dehydrogenase; Validated
Probab=92.52 E-value=0.63 Score=44.98 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=52.2
Q ss_pred cCCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
...+|.|+|+|..|...+.+|. ..++..+.++|.+ ..+++.+++.+.+..+ +.+..+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3578999999999999999987 4578889988744 2456666666654322 3333222
Q ss_pred cCCcccHHhhcccCcEEEEcCCC
Q 019513 171 ALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
+..+.++ .|+|+.||-+
T Consensus 187 -----~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 -----DIEEACD-CDILVTTTPS 203 (326)
T ss_pred -----CHHHHhh-CCEEEEecCC
Confidence 3345555 9999999876
No 368
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.52 E-value=0.17 Score=43.41 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=55.0
Q ss_pred cEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
+|.|+|+|.+|..+++.+.. .++.-+.+.| ..++..+...+=| ++--|+.+...- ..+-...+......+.
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d--~~~~~~~a~ll~~-Ds~hg~~~~~v~-----~~~~~l~i~g~~i~~~ 73 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND--LTDPETLAHLLKY-DSVHGRFPGEVE-----VDEDGLIVNGKKIKVL 73 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec--CCCHHHHHHHhcc-cCCCCCCCCcEE-----EeCCEEEECCEEEEEE
Confidence 69999999999999998874 4554455554 2344443332222 223455543211 0011111111111111
Q ss_pred ----cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEE
Q 019513 174 ----TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 212 (340)
Q Consensus 174 ----~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i 212 (340)
+.+..--..+.|+||+||..+.++.....+.. .|.+-|
T Consensus 74 ~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~-~GakkV 115 (149)
T smart00846 74 AERDPANLPWKELGVDIVVECTGKFTTREKASAHLK-AGAKKV 115 (149)
T ss_pred ecCChHHCcccccCCeEEEeccccccchHHHHHHHH-cCCCEE
Confidence 11111011367999999998887765544433 344433
No 369
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.49 E-value=0.2 Score=48.03 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=52.8
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
...++|+|+|.|-+|.+.|+..+..| ..++|+|.+.-..++| ..++ ..+++. .
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~l-----------------------dd~f-~~rv~~--~ 218 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQL-----------------------DDLF-GGRVHT--L 218 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhh-----------------------hHhh-CceeEE--E
Confidence 67899999999999999999999999 5689988543211111 1111 111222 2
Q ss_pred cCCcccHHhhcccCcEEEEcCCCh
Q 019513 171 ALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
.-++.++.+.+..+|+||.+.--+
T Consensus 219 ~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 219 YSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred EcCHHHHHHHhhhccEEEEEEEec
Confidence 234577888899999999886544
No 370
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.73 Score=41.99 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.9
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 367889999997 6799999999999996 4666653
No 371
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.48 E-value=1.5 Score=41.74 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=55.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
+|+|.|+ |-+|+.++..|...|. +++.++.+. .+. ..+.. +.++ .+..+++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~~v~--~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--WGAE--LVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--cCCE--EEECCCC
Confidence 6999996 6699999999999995 466655321 011 11111 1333 3333443
Q ss_pred -cccHHhhcccCcEEEEcCCChh------------hHHHHHHHHHHcCC-cEEEEeec
Q 019513 174 -TSNALEILSQYEIVVDATDNAP------------SRYMISDCCVVLGK-PLVSGAAL 217 (340)
Q Consensus 174 -~~~~~~~l~~~DlVi~~tD~~~------------~r~~i~~~~~~~~~-p~i~~~~~ 217 (340)
++...+.++++|+||.+..... .-..+-++|...++ .+|..++.
T Consensus 54 d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 54 LPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 3445666788898888754221 11235567777775 46665543
No 372
>PLN02740 Alcohol dehydrogenase-like
Probab=92.46 E-value=1.1 Score=44.01 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.8
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|+|+|++|..++..+...|+.++..+|.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 3678999999999999999999999888888764
No 373
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.42 E-value=0.67 Score=41.99 Aligned_cols=34 Identities=38% Similarity=0.455 Sum_probs=27.8
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 46789999995 7799999999999996 5666553
No 374
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.42 E-value=0.19 Score=47.55 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccc
Confidence 48999999999999999999998 8999998865
No 375
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.7 Score=42.08 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.3
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
..+++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 4578899999996 56999999999999974 777763
No 376
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.37 E-value=0.86 Score=41.58 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=30.5
Q ss_pred cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~D 126 (340)
.|++++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 4677889999985 799999999999996 78887754
No 377
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=92.37 E-value=0.82 Score=42.36 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+|+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899996 8899999999999984 5666654
No 378
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.35 E-value=0.72 Score=41.34 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=27.6
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+.+.+|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999986 66999999999999974 776653
No 379
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=92.34 E-value=0.78 Score=35.99 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=53.1
Q ss_pred cCCcEEEEcCChhHHHHHHH-HHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGAGGLGSPALLY-LAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~-La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
+..+|+|+|+|++|..++.. ....|.+-..++|.|. ..+|+.-. . +..+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i~------------g--ipV~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEIG------------G--IPVYG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEET------------T--EEEES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEEC------------C--EEeec-
Confidence 45789999999999988743 4568888889988553 22332110 1 22221
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.-+.+.+.+ +.|+.|.|+....++..+. .+.+.|+..|...
T Consensus 53 --~~~~l~~~~-~i~iaii~VP~~~a~~~~~-~~~~~gIk~i~nf 93 (96)
T PF02629_consen 53 --SMDELEEFI-EIDIAIITVPAEAAQEVAD-ELVEAGIKGIVNF 93 (96)
T ss_dssp --SHHHHHHHC-TTSEEEEES-HHHHHHHHH-HHHHTT-SEEEEE
T ss_pred --cHHHhhhhh-CCCEEEEEcCHHHHHHHHH-HHHHcCCCEEEEe
Confidence 112333444 4888888885444444444 4455888776543
No 380
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.33 E-value=0.82 Score=41.71 Aligned_cols=36 Identities=33% Similarity=0.485 Sum_probs=29.8
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+|++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 3577889999986 6699999999999996 5777764
No 381
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.31 E-value=0.18 Score=48.98 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=57.9
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|... +.... ... .+
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~--------------------~~~~~----~~~--~~----- 193 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTR--------------------KPEAE----KEL--GA----- 193 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC--------------------ChhhH----HHc--CC-----
Confidence 46899999999999999999999999997 577766421 00000 010 01
Q ss_pred cccCCcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHH---cCCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATDN-APSRYMISDCCVV---LGKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~---~~~p~i~~~ 215 (340)
...+..++++.+|+|+.++-. ..++.+|++.... .+.-+|+.+
T Consensus 194 ----~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 194 ----EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred ----EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 012345677889988877653 5567777654332 234456544
No 382
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=92.30 E-value=0.42 Score=47.40 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCccCC----CCCCCCCCCCCCCCHHHHh
Q 019513 14 LGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSN----GSYRPSSAVDYGLSPDMIY 72 (340)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~e~~ 72 (340)
..+|+.|++|++.|+.++.+|+++|+..+...+...+..+ ....|+.+..+.|++++..
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~ 86 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDAT 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHH
Confidence 4788999999999999999999999877654432111111 1112333457889999983
No 383
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.28 E-value=0.81 Score=41.65 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.4
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+.+++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 367899999996 5699999999999997 68887754
No 384
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.28 E-value=0.59 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+|.|||+|.+|..++..|++.|. ++.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999996 47777754
No 385
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.23 E-value=0.83 Score=43.74 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=28.0
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|+|.|+ |.+|+++++.|+..|. ++.++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEec
Confidence 46788999996 7799999999999996 4666664
No 386
>PRK08589 short chain dehydrogenase; Validated
Probab=92.19 E-value=0.73 Score=42.69 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=28.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
+|++++|+|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467889999997 6799999999999996 566665
No 387
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.19 E-value=2 Score=40.78 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=24.4
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
+|+|.|+ |.+|+.+++.|+..|. +++++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 6999995 8899999999999985 466665
No 388
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.17 E-value=0.56 Score=45.18 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=28.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~ 125 (340)
.+.+|+|+|+|++|..++..+.+ .|..+++++|.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 36799999999999998888876 67777888774
No 389
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.16 E-value=0.2 Score=49.48 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999995 799999875
No 390
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.15 E-value=0.71 Score=43.83 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=51.4
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
..|++++++|.|+ ||+|..+++.|+..|. ++.++|... ..+++.+.+.++... .++..
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~ 66 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA 66 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence 4577889999986 5699999999999997 466665321 123445555555543 34444
Q ss_pred ecccCCcc-cHHhh------cccCcEEEEcCC
Q 019513 168 HREALRTS-NALEI------LSQYEIVVDATD 192 (340)
Q Consensus 168 ~~~~~~~~-~~~~~------l~~~DlVi~~tD 192 (340)
+..++... ....+ +...|+||.+..
T Consensus 67 ~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 67 VAGDISQRATADELVATAVGLGGLDIVVNNAG 98 (306)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 55555432 12111 346788887654
No 391
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=92.14 E-value=0.73 Score=47.63 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHH----HcCC------CcEEEEeCCc
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLA----ACGV------GRLGIVDHDV 127 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La----~aGv------g~i~lvD~D~ 127 (340)
++|++.+|++.|+|+.|..+|+.|+ +.|+ .+|.++|.+-
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 5789999999999999999999988 4899 8999999664
No 392
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.09 E-value=1 Score=41.99 Aligned_cols=35 Identities=40% Similarity=0.476 Sum_probs=30.1
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
..+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 36789999999999999999888999987887753
No 393
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.19 Score=50.11 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEcCCCcEEEEEe
Q 019513 256 LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 301 (340)
Q Consensus 256 ~gpv~~i~g~l~A~eaik~l~g~~~~~~~~~~~fd~~~~~~~~~~l 301 (340)
+-.+.+.+|+++|+|+||+++.+.-|+.| .++||+.+..-.++++
T Consensus 479 lH~VsAfiGGiaaQEvIKLiTkQyvPidN-TFIfnGi~~~SaT~Kl 523 (523)
T KOG2016|consen 479 LHVVSAFIGGIAAQEVIKLITKQYVPIDN-TFIFNGITQESATFKL 523 (523)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhceecccc-eeEecccccccceecC
Confidence 34577899999999999999999999866 8889999987766653
No 394
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.63 Score=42.48 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=31.3
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 477899999996 6799999999999997 588887653
No 395
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.99 E-value=1.4 Score=42.82 Aligned_cols=35 Identities=34% Similarity=0.521 Sum_probs=32.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
...+|+|+|+||+|-.+..-+..+|.++|.-||-+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~ 219 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDIN 219 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCC
Confidence 46789999999999999999999999999999843
No 396
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.98 E-value=0.59 Score=45.53 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=53.3
Q ss_pred cEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 95 SILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 95 ~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
+|+|||+. .+|.++++.|...|...+.|+= +.+..+.|+.=. + ....+...+ ++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~~~~--~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELEVNE--AK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEEEEe--CC
Confidence 68999965 5899999999987655443321 112223333111 0 112222111 11
Q ss_pred cccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 174 TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 174 ~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
. +.+.++|+||.|+.+..++.+.... .+.|..+|+.+
T Consensus 56 ---~-~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 ---I-ESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred ---h-HHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 1 2347899999999988777665544 45677888754
No 397
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.98 E-value=0.89 Score=40.91 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=29.9
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456788999985 4799999999999997 78888744
No 398
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=91.96 E-value=1.3 Score=41.35 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=61.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH-hhCCCceEEEecccC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR-SINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~-~lnp~v~i~~~~~~~ 172 (340)
.+|+|+|--+=|..++..|...|. +.+ . . .+ +. ...+. ...+.+ ..+...+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s--v-----------~t--~~--------g~~~~~~~~~~~--~v~~G~l 52 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S--V-----------AT--SY--------GGELLKPELPGL--EVRVGRL 52 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-E--E-----------Eh--hh--------hHhhhccccCCc--eEEECCC
Confidence 479999988889999999999997 221 1 0 00 11 11111 111223 3344555
Q ss_pred -CcccHHhhc--ccCcEEEEcCCChhhHH--HHHHHHHHcCCcEEE
Q 019513 173 -RTSNALEIL--SQYEIVVDATDNAPSRY--MISDCCVVLGKPLVS 213 (340)
Q Consensus 173 -~~~~~~~~l--~~~DlVi~~tD~~~~r~--~i~~~~~~~~~p~i~ 213 (340)
+.+...+++ .+.++|||+|..++... -+.++|.+.|+|++-
T Consensus 53 g~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 53 GDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred CCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 555556666 47899999999988654 477899999999985
No 399
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.93 E-value=0.69 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=28.6
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 66889999996 5799999999999996 5777764
No 400
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.92 E-value=0.8 Score=44.18 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=50.9
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+. .+.+.+.+.+++... ++..+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~-------------------~~l~~~~~~l~~~g~--~~~~v 62 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGE-------------------EGLEALAAEIRAAGG--EALAV 62 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHcCC--cEEEE
Confidence 467788999996 6799999999999996 577766321 234445555554433 34444
Q ss_pred cccCCccc-HH-------hhcccCcEEEEcCC
Q 019513 169 REALRTSN-AL-------EILSQYEIVVDATD 192 (340)
Q Consensus 169 ~~~~~~~~-~~-------~~l~~~DlVi~~tD 192 (340)
..++++.. .. +.+...|++|.+..
T Consensus 63 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 63 VADVADAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred EecCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 44444321 11 12346788887764
No 401
>PRK12831 putative oxidoreductase; Provisional
Probab=91.90 E-value=1.2 Score=45.24 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCCCHHHHhhhhhhccCC-CCCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 64 YGLSPDMIYRYSRHLLLP-SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~-~~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++=..++||.-..... .|-......-..++|+|||+|..|..+|.+|++.|. +++|+|..
T Consensus 110 ~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 110 EPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 355556677775442110 011111122356889999999999999999999996 58888853
No 402
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.89 E-value=0.86 Score=41.63 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=28.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 478899999997 56999999999999974 556553
No 403
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.88 E-value=1.1 Score=43.09 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=26.4
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999996 669999999999999766666663
No 404
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.84 E-value=0.37 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD 124 (340)
.+++++|+|+|+|+.|-.+|.+|...|. .+++.|
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D 39 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGA-EVIAWD 39 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEC
Confidence 3667899999999999999999999996 577777
No 405
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.82 E-value=0.28 Score=48.95 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~ 127 (340)
++|+|||+|..|..+|..|.+.|- .+|+|||...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 379999999999999999999875 4899999765
No 406
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.78 E-value=1.4 Score=42.26 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.3
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4679999999999999999999999887776653
No 407
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.75 E-value=0.89 Score=45.61 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=55.4
Q ss_pred cccC-CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEE
Q 019513 90 NLLK-SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIE 167 (340)
Q Consensus 90 ~L~~-~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~ 167 (340)
++++ ++|+|+|.|+.|-..+..|...|- -.+++.|.... . ...+.|++ .+++.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~-------------------~--~~~~~l~~---g~~~~- 57 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET-------------------P--PGQEQLPE---DVELH- 57 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC-------------------c--hhHHHhhc---CCEEE-
Confidence 4556 789999999999999999999864 46888774320 0 01122322 33332
Q ss_pred ecccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 168 HREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 168 ~~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
..... .+.+.++|+||....-++.... -..+++.|+|+++
T Consensus 58 -~g~~~----~~~~~~~d~vV~SpgI~~~~p~-~~~a~~~gi~i~~ 97 (438)
T PRK04663 58 -SGGWN----LEWLLEADLVVTNPGIALATPE-IQQVLAAGIPVVG 97 (438)
T ss_pred -eCCCC----hHHhccCCEEEECCCCCCCCHH-HHHHHHCCCcEEE
Confidence 11111 2234678999877654443333 3345667777764
No 408
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.74 E-value=0.84 Score=40.81 Aligned_cols=35 Identities=40% Similarity=0.501 Sum_probs=28.9
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678999996 67999999999999976 7777654
No 409
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.73 E-value=1.3 Score=40.09 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=30.9
Q ss_pred HcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 89 ~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 4678899999985 5599999999999997 77887754
No 410
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.71 E-value=1 Score=46.38 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.9
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.....+|+|+|+|.+|..++..+.+.|. .+.++|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~ 197 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTR 197 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4568999999999999999999999998 68888753
No 411
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.70 E-value=1 Score=41.32 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=28.8
Q ss_pred cccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~ 125 (340)
+|+++.|+|.|++ |+|..+|+.|++.|.. +.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence 3678899999985 8999999999999964 666553
No 412
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.68 E-value=1.1 Score=41.03 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=27.4
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV 123 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv 123 (340)
.|++++|+|.|+ +|+|.++++.|+..|.. +.++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 477889999986 67999999999999975 5554
No 413
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.67 E-value=0.55 Score=44.92 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred cccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+||| .|-+|.++|.+|...|. .+++.+..+-
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~---------------------------------------- 193 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR---------------------------------------- 193 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC----------------------------------------
Confidence 58999999999 77799999999999995 5666532110
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (340)
+..+..+.+|+||.|+..+. .+.....+.|.-+|+.+..
T Consensus 194 -------~l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 194 -------DLPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred -------CHHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 12445678999999998865 3444445566667776643
No 414
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.66 E-value=1.3 Score=40.59 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=29.7
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 356788999995 7799999999999996 58887743
No 415
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.66 E-value=0.46 Score=47.92 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=26.8
Q ss_pred cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+||| +|.+|..++..|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999995 67887754
No 416
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.65 E-value=0.88 Score=43.31 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=27.9
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 45678999985 7799999999999994 6777764
No 417
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.64 E-value=0.39 Score=48.97 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=53.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL 172 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~ 172 (340)
.+|.|+|+|-+|..+|..|+..|.+ ++..+|.|.-....|+...+. +..+-.+.+..... .... .+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----~~e~gl~ell~~~~--~~~l-------~~ 68 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----IYEPGLDEVVKQCR--GKNL-------FF 68 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----cCCCCHHHHHHHhh--cCCE-------EE
Confidence 3699999999999999999999865 477788776555555555432 21222222211110 1011 11
Q ss_pred CcccHHhhcccCcEEEEcCCChh
Q 019513 173 RTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 173 ~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
+ .+..+.++++|++|.|+.++.
T Consensus 69 t-~~~~~~i~~advi~I~V~TP~ 90 (473)
T PLN02353 69 S-TDVEKHVAEADIVFVSVNTPT 90 (473)
T ss_pred E-cCHHHHHhcCCEEEEEeCCCC
Confidence 2 223445788999999987654
No 418
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.62 E-value=0.31 Score=44.92 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 86 ~~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
-.|.++++++++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4688999999999997 5799999999999996 57777654
No 419
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.59 E-value=0.22 Score=48.03 Aligned_cols=86 Identities=21% Similarity=0.201 Sum_probs=57.5
Q ss_pred HcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 89 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|... .....
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~------------------------ 186 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP------------------------ 186 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc------------------------
Confidence 46999999999999999999999998887 455555310 00000
Q ss_pred cccCCcccHHhhcccCcEEEEcCC-ChhhHHHHHHHHHHc---CCcEEEEe
Q 019513 169 REALRTSNALEILSQYEIVVDATD-NAPSRYMISDCCVVL---GKPLVSGA 215 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD-~~~~r~~i~~~~~~~---~~p~i~~~ 215 (340)
......++++.+|+|+.+.- +..++.+|+...... +.-+|+.+
T Consensus 187 ----~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 187 ----DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred ----cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 00135677888998776654 567888888765443 33456644
No 420
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.49 E-value=1 Score=41.83 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=29.0
Q ss_pred ccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD~ 125 (340)
++++.++|.|++ |+|.++|+.|+..|. ++.++|.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEec
Confidence 678899999986 799999999999996 4777664
No 421
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.49 E-value=1.1 Score=40.56 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.8
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|.+++|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999996 6799999999999997 6777763
No 422
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.48 E-value=1.5 Score=43.70 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=26.9
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+|+|.|+.|-.+|+.|...|. +++..|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence 58999999999999999999997 57777743
No 423
>PRK00811 spermidine synthase; Provisional
Probab=91.46 E-value=0.82 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=25.8
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+.++|+++|+|. |..+...|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 467899999985 44444445556899999998664
No 424
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=91.46 E-value=0.97 Score=43.71 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=51.8
Q ss_pred cCCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
...+|.|||+|..|..-++.|.. ..+.++.++| ....|++..++.+++... ++...
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g~--~v~~~-- 183 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYEV--PVRAA-- 183 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhCC--cEEEe--
Confidence 34789999999999987777654 3456777765 334567777777775432 22221
Q ss_pred cCCcccHHhhcccCcEEEEcCCC
Q 019513 171 ALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
.+..+.++++|+|+.||.+
T Consensus 184 ----~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 ----TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred ----CCHHHHhccCCEEEEecCC
Confidence 3456677899999999865
No 425
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.44 E-value=1.2 Score=44.38 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=57.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.++.||+|+|.|.+|..+++.|...|. .+.++|.|.++. . ...+.. .+..
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------~---------------------~~~g~~--vI~G 287 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------R---------------------LPDDAD--LIPG 287 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------h---------------------ccCCCc--EEEe
Confidence 446889999999999999999999886 688888763210 0 001111 2222
Q ss_pred cCCcccHH--hhcccCcEEEEcCCChhhHHHHHHHHHHcC
Q 019513 171 ALRTSNAL--EILSQYEIVVDATDNAPSRYMISDCCVVLG 208 (340)
Q Consensus 171 ~~~~~~~~--~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~ 208 (340)
+.+.++.. .-+++++.|+.++++......+-..+++.+
T Consensus 288 D~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 288 DSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 33322211 134678999989988777766666677765
No 426
>PLN00016 RNA-binding protein; Provisional
Probab=91.41 E-value=0.88 Score=44.55 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=63.8
Q ss_pred HHHHcccCCcEEEE----cC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC
Q 019513 86 EGQSNLLKSSILVI----GA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN 160 (340)
Q Consensus 86 ~~q~~L~~~~VlVv----G~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln 160 (340)
........++|+|+ |+ |-+|+.+++.|...|. ++++++.+.-....+.. ...... ..+..
T Consensus 45 ~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~-----------~~~~~~-~~l~~-- 109 (378)
T PLN00016 45 AAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK-----------EPFSRF-SELSS-- 109 (378)
T ss_pred hhhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc-----------Cchhhh-hHhhh--
Confidence 33455666889999 86 6699999999999994 67777754311000000 000000 11111
Q ss_pred CCceEEEecccCCcccHHhhc--ccCcEEEEcCCC-hhhHHHHHHHHHHcCC-cEEEEeecCcee
Q 019513 161 STVHIIEHREALRTSNALEIL--SQYEIVVDATDN-APSRYMISDCCVVLGK-PLVSGAALGLEG 221 (340)
Q Consensus 161 p~v~i~~~~~~~~~~~~~~~l--~~~DlVi~~tD~-~~~r~~i~~~~~~~~~-p~i~~~~~g~~G 221 (340)
+.+++ +..++.. ..+.+ .++|+||++... ...-..+-++|.+.++ .+|..++.+.+|
T Consensus 110 ~~v~~--v~~D~~d--~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 110 AGVKT--VWGDPAD--VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred cCceE--EEecHHH--HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 12332 2222221 22333 468999988643 2223345667888887 588776655544
No 427
>PRK05086 malate dehydrogenase; Provisional
Probab=91.40 E-value=0.65 Score=44.68 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=26.8
Q ss_pred CcEEEEcC-ChhHHHHHHHHHH-cCC-CcEEEEeCC
Q 019513 94 SSILVIGA-GGLGSPALLYLAA-CGV-GRLGIVDHD 126 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~-aGv-g~i~lvD~D 126 (340)
.||+|||+ |++|+.++..|.. .+. ..+.++|.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 47999999 9999999999865 455 468998853
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.40 E-value=0.95 Score=42.16 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=25.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
++.++|.|+||+|..+++.|+ .| .++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence 457888899999999999996 78 46777764
No 429
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.40 E-value=0.26 Score=47.75 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 430
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.37 E-value=2 Score=43.52 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=34.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.|++++|+|-|.|-+|..+|+.|...|..-+++-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5889999999999999999999999998888788866
No 431
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=91.29 E-value=0.25 Score=46.74 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=27.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 3699999999999999999999976 88888654
No 432
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.29 E-value=1.4 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.2
Q ss_pred ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|+|.| .||+|..+++.|+..|. ++.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6778899998 56799999999999997 4777664
No 433
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.24 E-value=1.1 Score=45.31 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred cEEEEcCChh-HHHHHHHHHH----cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 95 SILVIGAGGL-GSPALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 95 ~VlVvG~Ggl-Gs~va~~La~----aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
||+|||+|+. +-.+...|+. .++++|.|+|-|. ..|.+ =...+++..++.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 7999999996 4456666663 4578999999664 11111 1223445556666677776543
Q ss_pred ccCCcccHHhhcccCcEEEEcC--CChhhHHHHHHHHHHcCCcEEEEeecCceeE
Q 019513 170 EALRTSNALEILSQYEIVVDAT--DNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~t--D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
+..+.++++|+||.+. +..+.|..-.++..++|+ +...+.|..|.
T Consensus 67 ------dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 67 ------DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF 113 (437)
T ss_pred ------CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence 3467789999999775 334566666788899996 44455555553
No 434
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.18 E-value=0.68 Score=46.46 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=66.9
Q ss_pred cEEEEcCChhHH-HHHHHHHH----cCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 95 SILVIGAGGLGS-PALLYLAA----CGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 95 ~VlVvG~GglGs-~va~~La~----aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
||.|||+|+.-+ .+...|+. .++++|.|+|-|. +..|.. =...+.+.+++.++..+|....
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999744 56666665 5679999999773 211111 1234556666777777765543
Q ss_pred ccCCcccHHhhcccCcEEEEcCCC--hhhHHHHHHHHHHcCCcEEEEeecCcee
Q 019513 170 EALRTSNALEILSQYEIVVDATDN--APSRYMISDCCVVLGKPLVSGAALGLEG 221 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~--~~~r~~i~~~~~~~~~p~i~~~~~g~~G 221 (340)
+..+.+.+.|+||.+.-- .+.|..-.+...++|+- -..+.|..|
T Consensus 68 ------d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG 113 (419)
T cd05296 68 ------DRREALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGG 113 (419)
T ss_pred ------CHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcch
Confidence 346678899999987643 33455555566667653 244555555
No 435
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.18 E-value=1.3 Score=44.73 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred ccCCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEec
Q 019513 91 LLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHR 169 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~-va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~ 169 (340)
.++++|+|+|+|+.|.. +|+.|...|.. +++.|.+.. + .. +.|.+. .+.+..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~~~-------------------~--~~-~~l~~~--gi~~~~-- 57 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLKES-------------------A--VT-QRLLEL--GAIIFI-- 57 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCCCC-------------------h--HH-HHHHHC--CCEEeC--
Confidence 35578999999999999 79999999965 777764321 0 11 124443 333321
Q ss_pred ccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEE
Q 019513 170 EALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVS 213 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~ 213 (340)
.. . .+.+.++|+||....-++....+ ..+++.++|+++
T Consensus 58 ~~-~----~~~~~~~d~vv~spgi~~~~~~~-~~a~~~~i~i~~ 95 (461)
T PRK00421 58 GH-D----AENIKDADVVVYSSAIPDDNPEL-VAARELGIPVVR 95 (461)
T ss_pred CC-C----HHHCCCCCEEEECCCCCCCCHHH-HHHHHCCCcEEe
Confidence 11 1 23356799999776544433322 344566666664
No 436
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.16 E-value=0.95 Score=45.73 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=50.3
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHc-------CC-CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhC-CC
Q 019513 93 KSSILVIGA-GGLGSPALLYLAAC-------GV-GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSIN-ST 162 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~a-------Gv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~ln-p~ 162 (340)
-.+|.|||+ |.+|+.+|..|+.. |+ .+|.++| +-+.|++.-+.-|..-. |.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~ 160 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL 160 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence 368999999 99999999999988 44 2466654 33345555555555543 32
Q ss_pred c-eEEEecccCCcccHHhhcccCcEEEEcCCCh
Q 019513 163 V-HIIEHREALRTSNALEILSQYEIVVDATDNA 194 (340)
Q Consensus 163 v-~i~~~~~~~~~~~~~~~l~~~DlVi~~tD~~ 194 (340)
. +|.... +..+.++++|+||.+...+
T Consensus 161 ~~~v~i~~------~~ye~~kdaDiVVitAG~p 187 (444)
T PLN00112 161 LREVSIGI------DPYEVFQDAEWALLIGAKP 187 (444)
T ss_pred cCceEEec------CCHHHhCcCCEEEECCCCC
Confidence 2 221111 2245678999999887763
No 437
>PLN02712 arogenate dehydrogenase
Probab=91.12 E-value=1.1 Score=47.81 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.6
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.++..+|.|||+|.+|..+|+.|...|. +|.++|.+
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~ 401 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRS 401 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECC
Confidence 4577899999999999999999999984 57777753
No 438
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.11 E-value=0.3 Score=49.11 Aligned_cols=32 Identities=38% Similarity=0.418 Sum_probs=28.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
..+|+|||+|-+|+++|..|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35799999999999999999999965 888884
No 439
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.09 E-value=1.4 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.8
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
++++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 366789999997 7899999999999996 455554
No 440
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.07 E-value=1.5 Score=47.19 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCCCHHHHhhhhhhccCCC--CCHHHHHcccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 64 YGLSPDMIYRYSRHLLLPS--FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 64 ~~l~~~e~~ry~Rq~~l~~--~G~~~q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+.+-..++||-=...... +.......-..++|+|||+|..|..+|.+|++.|. +++|+|..
T Consensus 400 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 400 EAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 4577777777653221100 00111123357799999999999999999999996 59999864
No 441
>PRK08264 short chain dehydrogenase; Validated
Probab=91.06 E-value=0.37 Score=43.37 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=32.3
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++++++|+|.|+ |++|..+++.|+..|..++.+++.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 467889999995 77999999999999987888887543
No 442
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.05 E-value=1 Score=42.69 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
..+|+|+|+|.+|..+++.|.+.|... .+++.|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~d 35 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV-RIIGRD 35 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE-EEEeec
Confidence 468999999999999999999999653 344443
No 443
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.02 E-value=0.9 Score=50.43 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.9
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..++|+|||+|..|-.+|.+|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 35789999999999999999999996 699998653
No 444
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.01 E-value=0.72 Score=46.15 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.4
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+.+++|+|+|.|+.|-.++..|...|. +++..|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 457889999999999999999999996 68888854
No 445
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.00 E-value=1.2 Score=44.75 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHH
Q 019513 93 KSSILVIGAGGLGSPALLYLAA 114 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~ 114 (340)
.-+|.|+|+|.+|..+++.|..
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~ 24 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEE 24 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHH
Confidence 3579999999999999988854
No 446
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.96 E-value=1.4 Score=40.26 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=26.5
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGI 122 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~l 122 (340)
.|++++|+|.|+ |++|..+++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 467789999985 569999999999999764433
No 447
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.92 E-value=1.1 Score=40.50 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.5
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcE
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRL 120 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i 120 (340)
+.+++|+|.|+ |++|..+++.|+..|...+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999986 5699999999999996533
No 448
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=90.82 E-value=1.8 Score=38.42 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=56.7
Q ss_pred EEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC-
Q 019513 96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR- 173 (340)
Q Consensus 96 VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~- 173 (340)
|+|+|+.| +|+++++.|...|..-+.+..... ......... .+..+..++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~--------------------~~~~~~~~~-------~~~~~~~dl~~ 53 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSN--------------------SESFEEKKL-------NVEFVIGDLTD 53 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCST--------------------GGHHHHHHT-------TEEEEESETTS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccc--------------------ccccccccc-------eEEEEEeeccc
Confidence 78999655 999999999999976443221110 000000000 2333333444
Q ss_pred cccHHhhcccC--cEEEEcCCChh--------h---------HHHHHHHHHHcCC-cEEEEeecCceeE
Q 019513 174 TSNALEILSQY--EIVVDATDNAP--------S---------RYMISDCCVVLGK-PLVSGAALGLEGQ 222 (340)
Q Consensus 174 ~~~~~~~l~~~--DlVi~~tD~~~--------~---------r~~i~~~~~~~~~-p~i~~~~~g~~G~ 222 (340)
.+...++++.. |.|+.+..... . -..+-+.|.+.++ .+|..++.+.+|.
T Consensus 54 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~ 122 (236)
T PF01370_consen 54 KEQLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGD 122 (236)
T ss_dssp HHHHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTS
T ss_pred cccccccccccCceEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34555666655 88888866531 0 0124466777776 7888777655553
No 449
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.81 E-value=0.7 Score=43.96 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=56.8
Q ss_pred cccCCcEEEEcCChh-HHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGAGGL-GSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.+++++|+|||.|.+ |.+++..|...|. ++++.+.
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs------------------------------------------- 190 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS------------------------------------------- 190 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC-------------------------------------------
Confidence 579999999999997 9999999998884 4555311
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEeec
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 217 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~~~ 217 (340)
...+..+.++.+|+||.++..+. ++.....+.|.-+|+.+..
T Consensus 191 ----~t~~l~~~~~~ADIVV~avG~~~---~i~~~~ik~gavVIDVGin 232 (285)
T PRK14189 191 ----KTRDLAAHTRQADIVVAAVGKRN---VLTADMVKPGATVIDVGMN 232 (285)
T ss_pred ----CCCCHHHHhhhCCEEEEcCCCcC---ccCHHHcCCCCEEEEcccc
Confidence 01234567788999999988644 4555666677778887754
No 450
>PLN00198 anthocyanidin reductase; Provisional
Probab=90.80 E-value=3.6 Score=39.33 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccCCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 91 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
++.++|+|.| +|.+|+.+++.|...|. ++.+++.|
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3467899999 55699999999999996 56555443
No 451
>PRK05855 short chain dehydrogenase; Validated
Probab=90.80 E-value=1.1 Score=45.87 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=52.7
Q ss_pred HHHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceE
Q 019513 87 GQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHI 165 (340)
Q Consensus 87 ~q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i 165 (340)
.+..+++.+++|+|+ ||+|..+++.|+..|.. +.+++.+ ..+.+.+++.+++... ++
T Consensus 309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~--~~ 366 (582)
T PRK05855 309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDID-------------------EAAAERTAELIRAAGA--VA 366 (582)
T ss_pred ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--eE
Confidence 345678899999986 78999999999999975 7776632 1344455555554433 34
Q ss_pred EEecccCCcc-cHHhh-------cccCcEEEEcCC
Q 019513 166 IEHREALRTS-NALEI-------LSQYEIVVDATD 192 (340)
Q Consensus 166 ~~~~~~~~~~-~~~~~-------l~~~DlVi~~tD 192 (340)
..+..++++. ...++ +...|+||.+..
T Consensus 367 ~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag 401 (582)
T PRK05855 367 HAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAG 401 (582)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 4444555532 22222 234688877764
No 452
>PRK06720 hypothetical protein; Provisional
Probab=90.79 E-value=1.7 Score=37.81 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=29.7
Q ss_pred cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+++.++|.|++ |+|..++..|+..| .++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 4678899999976 59999999999999 467777744
No 453
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=90.76 E-value=1.9 Score=41.40 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=25.4
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
++|+|.|+ |.+|+.+++.|...|. ++.++|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 47899986 6699999999999996 5666664
No 454
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.74 E-value=1.2 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=26.4
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV 123 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv 123 (340)
+++++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 56789999985 77999999999999974 4443
No 455
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=90.68 E-value=1.9 Score=44.01 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.4
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.+.+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 34799999999999999999999996 589988543
No 456
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.67 E-value=0.95 Score=43.59 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=60.7
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHH--hhCCCceEEEec
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCR--SINSTVHIIEHR 169 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~--~lnp~v~i~~~~ 169 (340)
..++|+|.|+|++|..+++---.+|.++|.=|| +...|-+.+++.=. =+||. ...-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvD-------------------iN~~Kf~~ak~fGaTe~iNp~-d~~~-- 249 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVD-------------------INPDKFEKAKEFGATEFINPK-DLKK-- 249 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEe-------------------cCHHHHHHHHhcCcceecChh-hccc--
Confidence 458999999999999999999999999999987 33334444432210 12332 1000
Q ss_pred ccCCcccHHhhc-ccCcEEEEcCCChhhHHHHHHHHHHc-CCcEEE
Q 019513 170 EALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVL-GKPLVS 213 (340)
Q Consensus 170 ~~~~~~~~~~~l-~~~DlVi~~tD~~~~r~~i~~~~~~~-~~p~i~ 213 (340)
.+. +-+.+.- .++|+-++|+.++.+-..--..|+.- |+-++-
T Consensus 250 -~i~-evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 250 -PIQ-EVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred -cHH-HHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 000 0011111 47999999999988766555555553 554443
No 457
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.65 E-value=1.4 Score=40.03 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.9
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
.|.+++++|.|+ |++|..+++.|+..|. ++.++|
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 367788999986 5699999999999996 566655
No 458
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=90.60 E-value=1.1 Score=43.70 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=52.2
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHcCCCcE-EEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 94 SSILVIGA-GGLGSPALLYLAACGVGRL-GIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 94 ~~VlVvG~-GglGs~va~~La~aGvg~i-~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
.+|+|+|+ |.+|.+++..|....--++ .+.|.. ..|+ .+.+..+..... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence 58999998 6789999999987643344 333311 1111 111111211100 0001
Q ss_pred CCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 172 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
+.+.... .+.+.|+|+.|+.+.....++ ..+.+.|+++|+.+
T Consensus 58 ~~~~~~~-~~~~vD~Vf~alP~~~~~~~v-~~a~~aG~~VID~S 99 (343)
T PRK00436 58 LEPLDPE-ILAGADVVFLALPHGVSMDLA-PQLLEAGVKVIDLS 99 (343)
T ss_pred eecCCHH-HhcCCCEEEECCCcHHHHHHH-HHHHhCCCEEEECC
Confidence 1111111 346799999999886554444 44566899999854
No 459
>PRK06199 ornithine cyclodeaminase; Validated
Probab=90.55 E-value=1.5 Score=43.43 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=57.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCc-eEEEec
Q 019513 93 KSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTV-HIIEHR 169 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v-~i~~~~ 169 (340)
.++++|+|+|.-+..-+..++.. .+.++.++|.+ ..|++..++++.+..+.+ ++...
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEe-
Confidence 47899999999999999988763 58899987643 357888888888766544 34442
Q ss_pred ccCCcccHHhhcccCcEEEEcCCC
Q 019513 170 EALRTSNALEILSQYEIVVDATDN 193 (340)
Q Consensus 170 ~~~~~~~~~~~l~~~DlVi~~tD~ 193 (340)
++..+.+.++|+|+.||-+
T Consensus 215 -----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 -----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred -----CCHHHHHcCCCEEEEccCC
Confidence 3456778999999998865
No 460
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.48 E-value=2.5 Score=41.16 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.0
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~ 218 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI 218 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3678999999999999998888899877877763
No 461
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.48 E-value=2.4 Score=41.13 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=66.0
Q ss_pred cCCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 92 LKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 92 ~~~~VlVvG~Gg-lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.+++|+|-|++| +|+++++.|...|-.-.+.|. +-+..|-......|....+. ...+..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR------------------~~~~~k~~~~L~~l~~a~~~--l~l~~a 64 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR------------------DPEDEKKTEHLRKLEGAKER--LKLFKA 64 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc------------------CcchhhhHHHHHhcccCccc--ceEEec
Confidence 568899999988 999999999999976555443 22222322222233322222 445555
Q ss_pred cCCc-ccHHhhcccCcEEEEcCCChhh-------HH---------HHHHHHHHcC--CcEEEEeec
Q 019513 171 ALRT-SNALEILSQYEIVVDATDNAPS-------RY---------MISDCCVVLG--KPLVSGAAL 217 (340)
Q Consensus 171 ~~~~-~~~~~~l~~~DlVi~~tD~~~~-------r~---------~i~~~~~~~~--~p~i~~~~~ 217 (340)
++.. +...+.++++|.|+.+...+.. +. -+-++|.+.+ +++|..+..
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~ 130 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSST 130 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccH
Confidence 6554 4456678999999977654221 11 1447788887 778875543
No 462
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=90.46 E-value=0.35 Score=47.18 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=30.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
...|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 4579999999999999999999997 599999764
No 463
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=90.44 E-value=0.95 Score=41.60 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=22.2
Q ss_pred cEEEEcCChhHHHHHHHHHHc--CCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAAC--GVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D 126 (340)
+|.|||||++|..+++.+-.- .+..+.+.|.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~ 35 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD 35 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC
Confidence 689999999999988866432 24445555543
No 464
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.43 E-value=1.2 Score=40.83 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=29.6
Q ss_pred cccCCcEEEEcC---ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~---GglGs~va~~La~aGvg~i~lvD~ 125 (340)
++++++++|.|+ +|+|.++++.|++.|. ++.+.|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence 367889999996 6999999999999996 5777764
No 465
>PRK07074 short chain dehydrogenase; Provisional
Probab=90.43 E-value=1.3 Score=40.28 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=26.8
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467999997 6799999999999995 5777764
No 466
>PRK08303 short chain dehydrogenase; Provisional
Probab=90.42 E-value=2.3 Score=40.44 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=30.0
Q ss_pred cccCCcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~G-glGs~va~~La~aGvg~i~lvD~D 126 (340)
.|+++.|+|.|++ |+|.++++.|+..|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 3678899999974 799999999999996 57777654
No 467
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.38 E-value=0.37 Score=46.04 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999996 689998653
No 468
>PLN02827 Alcohol dehydrogenase-like
Probab=90.33 E-value=1.7 Score=42.67 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.2
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4689999999999999999888999877777763
No 469
>PRK06184 hypothetical protein; Provisional
Probab=90.33 E-value=0.36 Score=49.18 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=30.1
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
....|+|||+|..|..+|..|++.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 356799999999999999999999995 8888854
No 470
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.32 E-value=1.4 Score=40.20 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=27.8
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
+|.+++|+|.|+ |++|..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 467899999985 56999999999999964 55555
No 471
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.31 E-value=1.6 Score=39.95 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.6
Q ss_pred HcccCCcEEEEcCC---hhHHHHHHHHHHcCCCcEEEEe
Q 019513 89 SNLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 89 ~~L~~~~VlVvG~G---glGs~va~~La~aGvg~i~lvD 124 (340)
.+|++++|+|.|++ |+|..+|+.|+..|. ++.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 36889999999995 799999999999997 466554
No 472
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=90.30 E-value=2.1 Score=41.04 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=24.6
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 019513 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVD 124 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGvg~i~lvD 124 (340)
+|+|.|+ |.+|+.+++.|...|...+..+|
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 6899986 77999999999999876555555
No 473
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.30 E-value=2.5 Score=42.75 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=32.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|++++|+|-|.|-+|+.+|+.|...|..-+.+-|.
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~ 260 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGP 260 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 488999999999999999999999999887776553
No 474
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.28 E-value=1.4 Score=42.77 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=53.5
Q ss_pred CcEEEEcCCh-hHHHHHHHHHHcCCCc--EEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 94 SSILVIGAGG-LGSPALLYLAACGVGR--LGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 94 ~~VlVvG~Gg-lGs~va~~La~aGvg~--i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.+|+|+|+.| +|.++++.|...|... +..+- +..+.|+.=. ++ ..++...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~---------------s~~~~g~~l~---------~~-g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLA---------------SARSAGKELS---------FK-GKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEE---------------ccccCCCeee---------eC-CceeEEe--
Confidence 4799999766 8999999999876543 33321 1122332210 11 1222221
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHHHHcCCcEEEEe
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 215 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~~~~~~p~i~~~ 215 (340)
.+.. ..++++|+||.|+.+..++.+..++ .+.|..+|+.+
T Consensus 55 d~~~----~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 55 DLTT----FDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred eCCH----HHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 1111 1246899999999988777766654 45677888644
No 475
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.27 E-value=0.36 Score=51.15 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 476
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=90.25 E-value=2.7 Score=39.93 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=24.0
Q ss_pred cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEe
Q 019513 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVD 124 (340)
Q Consensus 95 ~VlVvG~-GglGs~va~~La~aGv-g~i~lvD 124 (340)
+|+|.|+ |.+|+.+++.|...|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5899997 7799999999999984 3566654
No 477
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.25 E-value=0.72 Score=42.09 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=30.3
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++.+++|+|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 366789999996 7799999999999996 577776543
No 478
>PRK06128 oxidoreductase; Provisional
Probab=90.20 E-value=1.5 Score=41.24 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHcccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 019513 88 QSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIV 123 (340)
Q Consensus 88 q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lv 123 (340)
..+|++++|+|.|+ |++|..+++.|++.|.. +.++
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~ 85 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGAD-IALN 85 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEE
Confidence 34688899999986 67999999999999974 5544
No 479
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=90.20 E-value=0.38 Score=47.35 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999995 699999874
No 480
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=90.16 E-value=1.4 Score=46.83 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=28.6
Q ss_pred ccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 91 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
|++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 56788999986 6799999999999996 6777764
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.15 E-value=0.41 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
++|.|||+|..|+.||..++.+|. .++|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999996 699999653
No 482
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.12 E-value=0.35 Score=47.63 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999997 589998764
No 483
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.11 E-value=0.36 Score=47.27 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=30.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
...|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 35799999999999999999999986 99999754
No 484
>PRK15076 alpha-galactosidase; Provisional
Probab=90.10 E-value=0.8 Score=46.12 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=59.0
Q ss_pred CcEEEEcCChhHHHHHH--HHH-HcCC--CcEEEEeCCcccccCCccccccCCCccCccc-HHH-HHHHHHhhCCCceEE
Q 019513 94 SSILVIGAGGLGSPALL--YLA-ACGV--GRLGIVDHDVVELNNMHRQVIHTEPYIGQSK-VKS-AAATCRSINSTVHII 166 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~--~La-~aGv--g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K-a~~-a~~~L~~lnp~v~i~ 166 (340)
.+|.|||+|++|...+. .++ ..+. .+|.|+|-|. .+.+ +.. +.+.+....+..+|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~-----------------er~~~~~~l~~~~~~~~~~~~~i~ 64 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP-----------------ERLEESEIVARKLAESLGASAKIT 64 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH-----------------HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 47999999999876655 554 2223 3899998543 0111 112 333344444445554
Q ss_pred EecccCCcccHHhhcccCcEEEEcCCCh--hhHH-HHHHHHHHcCCcEEEEeecCceeE
Q 019513 167 EHREALRTSNALEILSQYEIVVDATDNA--PSRY-MISDCCVVLGKPLVSGAALGLEGQ 222 (340)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~DlVi~~tD~~--~~r~-~i~~~~~~~~~p~i~~~~~g~~G~ 222 (340)
.. .+..+.++++|+||.+.... ..+. .=.+...++|+----+.+.|..|.
T Consensus 65 ~t------tD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~ 117 (431)
T PRK15076 65 AT------TDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGI 117 (431)
T ss_pred EE------CCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccch
Confidence 32 22345678999999887764 2222 233566777764111244444443
No 485
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=90.07 E-value=1.6 Score=41.03 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=26.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 96 VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
|+|.|+ |-+|+++++.|...|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 788885 6699999999999998778888753
No 486
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.03 E-value=0.91 Score=43.22 Aligned_cols=125 Identities=20% Similarity=0.215 Sum_probs=68.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccC-
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREAL- 172 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~- 172 (340)
.+|.+||+|..|.++|.+|..+| -.++++|.+.--...+-+ ..|-.-+...++...+. ++-|.......
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~~a--DvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYNRTPEKAAELLA-------AAGATVAASPAEAAAEA--DVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHHhC--CEEEEecCCHHH
Confidence 47999999999999999999999 457777654311000000 11221122222222221 22222211110
Q ss_pred ------CcccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEeC
Q 019513 173 ------RTSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYNY 228 (340)
Q Consensus 173 ------~~~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~~ 228 (340)
-++...+-+++=.+|||++-. +..-..+.+.....|..++++-+.|. .|.+++..-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeC
Confidence 011122223445677777654 55566788888999999988655543 467766543
No 487
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.00 E-value=1.3 Score=42.02 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=65.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecccCC
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREALR 173 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~~~ 173 (340)
.+|.|||+|-+|..++..|++.|. +++++|.+.-....+.. .|...+....+.++. .++-+...+....
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~--------~g~~~~~s~~~~~~~--aDvVi~~vp~~~~ 70 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD--------KGATPAASPAQAAAG--AEFVITMLPNGDL 70 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------cCCcccCCHHHHHhc--CCEEEEecCCHHH
Confidence 379999999999999999999995 68888865322111111 122222222222221 1333333222110
Q ss_pred -c------ccHHhhcccCcEEEEcCCC-hhhHHHHHHHHHHcCCcEEEEeecCc-----eeEEEEEe
Q 019513 174 -T------SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 227 (340)
Q Consensus 174 -~------~~~~~~l~~~DlVi~~tD~-~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~i~v~~ 227 (340)
. ......+..-.+||+++-. +..-..+.+.....++.++++-..|. .|.+.++.
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence 0 0111123333466666544 44455566777778888887655443 35555543
No 488
>PRK05717 oxidoreductase; Validated
Probab=89.99 E-value=1.5 Score=40.05 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=29.6
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 126 (340)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 356788999996 6799999999999995 67877643
No 489
>PRK06185 hypothetical protein; Provisional
Probab=89.99 E-value=0.43 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=30.7
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
.+..|+|||+|.+|..+|..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 35679999999999999999999997 589999753
No 490
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=89.97 E-value=0.94 Score=46.00 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=58.0
Q ss_pred cccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCC-CccCcccHHHHHHHHHhhCCCceEEEe
Q 019513 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTE-PYIGQSKVKSAAATCRSINSTVHIIEH 168 (340)
Q Consensus 90 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~-~diG~~Ka~~a~~~L~~lnp~v~i~~~ 168 (340)
.....+|+|||+|+-|-.+|..|+++|+. +++++...- .-.+-.+... -.+.+.=++...+.|.+.+ +++..-
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~~~---~GGll~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~~~ 193 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERVAL---DGGLLLYGIPDFKLPKDILDRRLELLERSG--VEFKLN 193 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCcCC---CceeEEecCchhhccchHHHHHHHHHHHcC--eEEEEc
Confidence 34558999999999999999999999965 666553211 1111111100 0112222334445555555 555432
Q ss_pred cccCCcccHHhhcccCcEEEEcCCChh
Q 019513 169 REALRTSNALEILSQYEIVVDATDNAP 195 (340)
Q Consensus 169 ~~~~~~~~~~~~l~~~DlVi~~tD~~~ 195 (340)
...=.+-...++++.||.|+.|+....
T Consensus 194 ~~vG~~it~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 194 VRVGRDITLEELLKEYDAVFLATGAGK 220 (457)
T ss_pred ceECCcCCHHHHHHhhCEEEEeccccC
Confidence 221113445677788999999987654
No 491
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.93 E-value=1.7 Score=34.11 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEeccc
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHREA 171 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~~ 171 (340)
++.+|+-+|||. |......+....-.+++-||.+. .-.+.+.+.+.+....-++..+...
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d 60 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGD 60 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESC
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECc
Confidence 468999999985 44433333333445688888643 2245566666454445555555555
Q ss_pred CCcccHHhhcccCcEEEEcC
Q 019513 172 LRTSNALEILSQYEIVVDAT 191 (340)
Q Consensus 172 ~~~~~~~~~l~~~DlVi~~t 191 (340)
+ ....+...+||+|+...
T Consensus 61 ~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 61 A--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp C--HGGTTTSSCEEEEEECS
T ss_pred c--ccCcccCCCCCEEEECC
Confidence 5 22244556799999765
No 492
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.92 E-value=0.47 Score=45.88 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=30.5
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 129 (340)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 59999999999999999999995 69999988763
No 493
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.92 E-value=2.5 Score=41.03 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=29.6
Q ss_pred cCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 92 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~ 219 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDI 219 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3678999999999999999999999877887764
No 494
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=89.90 E-value=0.39 Score=47.55 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=28.0
Q ss_pred cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 019513 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (340)
Q Consensus 95 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 126 (340)
+|+|||+|..|+.+|..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999975 8888854
No 495
>PRK07454 short chain dehydrogenase; Provisional
Probab=89.87 E-value=1.9 Score=38.73 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=26.9
Q ss_pred CCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 93 KSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 93 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467899986 7799999999999997 6777764
No 496
>PRK08628 short chain dehydrogenase; Provisional
Probab=89.83 E-value=1.7 Score=39.53 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=28.4
Q ss_pred cccCCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 019513 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (340)
Q Consensus 90 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~ 125 (340)
.|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 477889999995 56999999999999975 555543
No 497
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.83 E-value=2.6 Score=38.06 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=27.4
Q ss_pred CCcEEEEcCChhHHHHHHHHH--HcCCCcEEEEeCC
Q 019513 93 KSSILVIGAGGLGSPALLYLA--ACGVGRLGIVDHD 126 (340)
Q Consensus 93 ~~~VlVvG~GglGs~va~~La--~aGvg~i~lvD~D 126 (340)
..+|+|+|+|.+|..++.++. ..|+.-+.++|.|
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 458999999999999998743 4677777888865
No 498
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.82 E-value=2.6 Score=39.67 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=58.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCCcccccCCccccccCCCccCcccHHHHHHHHHhhCCCceEEEecc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRQVIHTEPYIGQSKVKSAAATCRSINSTVHIIEHRE 170 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~a~~~L~~lnp~v~i~~~~~ 170 (340)
.+|.+||+|..|..++.-|...|. .+|.+.|.+ .+... .+.+.++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~----------------------~e~~~-~l~~~~g~~-~----- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS----------------------EEKRA-ALAAEYGVV-T----- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC----------------------HHHHH-HHHHHcCCc-c-----
Confidence 479999999999999999999994 466665432 12222 344443322 1
Q ss_pred cCCcccHHhhcccCcEEEEcCCChhhHHHHHHHH-HHcCCcEEEEe
Q 019513 171 ALRTSNALEILSQYEIVVDATDNAPSRYMISDCC-VVLGKPLVSGA 215 (340)
Q Consensus 171 ~~~~~~~~~~l~~~DlVi~~tD~~~~r~~i~~~~-~~~~~p~i~~~ 215 (340)
..+..+.....|+||.|.-.......++++- ...++.+||..
T Consensus 53 ---~~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISia 95 (266)
T COG0345 53 ---TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIA 95 (266)
T ss_pred ---cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEe
Confidence 2334566778999999988755555555554 23456677743
No 499
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=89.80 E-value=0.45 Score=46.31 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 019513 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (340)
Q Consensus 94 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 128 (340)
..|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 469999999999999999999997 6999996654
No 500
>PRK07236 hypothetical protein; Provisional
Probab=89.80 E-value=0.47 Score=46.45 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.3
Q ss_pred ccCCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 019513 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (340)
Q Consensus 91 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 127 (340)
+...+|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4567899999999999999999999985 88888653
Done!