Query 019514
Match_columns 340
No_of_seqs 131 out of 1641
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 02:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.3E-07 4.4E-12 72.8 5.4 61 243-303 43-104 (137)
2 3b5d_A Multidrug transporter E 98.5 1.2E-06 4.2E-11 65.0 9.9 71 83-153 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 3.9E-07 1.3E-11 70.1 4.2 70 83-152 34-104 (137)
4 3b5d_A Multidrug transporter E 98.0 1.5E-05 5.3E-10 58.9 7.5 58 245-302 45-103 (110)
5 3l1l_A Arginine/agmatine antip 42.7 45 0.0016 29.9 6.5 22 286-307 410-431 (445)
6 3rko_J NADH-quinone oxidoreduc 18.0 3.6E+02 0.012 21.1 7.4 23 272-294 128-150 (184)
7 4djk_A Probable glutamate/gamm 16.3 5.9E+02 0.02 22.8 9.4 8 292-299 454-461 (511)
8 4h33_A LMO2059 protein; bilaye 13.6 3.9E+02 0.013 19.4 7.2 16 286-301 71-86 (137)
9 2hac_A T-cell surface glycopro 10.4 2.4E+02 0.0082 15.2 3.0 26 110-135 7-32 (33)
10 2jp3_A FXYD domain-containing 9.7 2.1E+02 0.0072 18.3 2.4 36 287-322 23-58 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.50 E-value=1.3e-07 Score=72.84 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccchhHHHHH-hhhhhHHHhhhhhhccCcccccchhhhhhHHhHhHHHHHhh
Q 019514 243 LNFSIFYVIHSTTAVTFNVA-GNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 303 (340)
Q Consensus 243 ~~~~~~~~~~~~~a~~~s~~-~~~~~v~~~l~~~~~~~e~~s~~~~~G~~li~~g~~~~~~~ 303 (340)
..+.....+++.++..+..+ ..+.|+++.++|++++||++|+.+++|+++++.|+++.+..
T Consensus 43 s~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33455677899999988777 89999999999999999999999999999999999998753
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.46 E-value=1.2e-06 Score=64.95 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhceeeeccc
Q 019514 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 153 (340)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~l~~~~l~e~~~~~~~~~i~l~~~Gv~i~~~~~ 153 (340)
+...+++.....+...++++.|.+.+..+ .++.|+++.+++++++||++++.+++|+.++++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44456678888999999999999999888 899999999999999999999999999999999998876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.31 E-value=3.9e-07 Score=70.10 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHHhhcccchhhhhhhhhhhhhceeeecc
Q 019514 83 FPMSFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 152 (340)
Q Consensus 83 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~~l~~~~l~e~~~~~~~~~i~l~~~Gv~i~~~~ 152 (340)
+...+++++..++++.+++++|++.+..+ .++.|++++++++++++|++++.+++|+.++++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44456678899999999999999988888 89999999999999999999999999999999999887643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.03 E-value=1.5e-05 Score=58.94 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHHHhccchhHHHHH-hhhhhHHHhhhhhhccCcccccchhhhhhHHhHhHHHHHh
Q 019514 245 FSIFYVIHSTTAVTFNVA-GNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 302 (340)
Q Consensus 245 ~~~~~~~~~~~a~~~s~~-~~~~~v~~~l~~~~~~~e~~s~~~~~G~~li~~g~~~~~~ 302 (340)
+.....+++.+...+... ..+.|+.+.+++++++||++|+.+++|..+++.|++..+.
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344566899988888776 8999999999999999999999999999999999998764
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=42.73 E-value=45 Score=29.89 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=15.6
Q ss_pred hhhhhhHHhHhHHHHHhhhhhh
Q 019514 286 NAVGCAITLIGCTFYGYIRHLL 307 (340)
Q Consensus 286 ~~~G~~li~~g~~~~~~~~~~~ 307 (340)
.+.|.+++..|..+|...++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4457778888888888765544
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=17.97 E-value=3.6e+02 Score=21.11 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=17.2
Q ss_pred hhhhhccCcccccchhhhhhHHh
Q 019514 272 LVSWLIFRNPISGMNAVGCAITL 294 (340)
Q Consensus 272 l~~~~~~~e~~s~~~~~G~~li~ 294 (340)
-+|..++++..=+.++.|.++..
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788887788888877764
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=16.26 E-value=5.9e+02 Score=22.84 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=2.9
Q ss_pred HHhHhHHH
Q 019514 292 ITLIGCTF 299 (340)
Q Consensus 292 li~~g~~~ 299 (340)
+++.++.+
T Consensus 454 ~~~~~i~~ 461 (511)
T 4djk_A 454 LVVLALPF 461 (511)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=13.62 E-value=3.9e+02 Score=19.43 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=8.7
Q ss_pred hhhhhhHHhHhHHHHH
Q 019514 286 NAVGCAITLIGCTFYG 301 (340)
Q Consensus 286 ~~~G~~li~~g~~~~~ 301 (340)
.+++++.++.|+.++.
T Consensus 71 r~~~~~~~~~g~~~~~ 86 (137)
T 4h33_A 71 RILASIMMLFGIAFIG 86 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555556655543
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=10.44 E-value=2.4e+02 Score=15.18 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhh
Q 019514 110 TIKSFTPATTVVLQWLVWRKYFDWRI 135 (340)
Q Consensus 110 ~l~~~~pi~~~~l~~~~l~e~~~~~~ 135 (340)
++...--+...++..++.++|+.+.+
T Consensus 7 iLDgiL~iYgii~T~Ly~R~K~~~~~ 32 (33)
T 2hac_A 7 LLDGILFIYGVILTALFLRVKFSRSA 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhccC
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.69 E-value=2.1e+02 Score=18.26 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhhhHHhHhHHHHHhhhhhhhCCCCCCCCCCCCCc
Q 019514 287 AVGCAITLIGCTFYGYIRHLLSQQPPPGTPRTPRTP 322 (340)
Q Consensus 287 ~~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (340)
+.+.++.++|+++....+-+...+.+.+....+.+.
T Consensus 23 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~~ 58 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTP 58 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSHH
T ss_pred hhHHHHHHHHHHHHHcCcccccCCCCCCCCCccCCc
Done!