Query 019514
Match_columns 340
No_of_seqs 131 out of 1641
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 03:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 25.4 33 0.0024 15.8 2.9 17 159-175 3-19 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 19.0 2.3E+02 0.016 23.0 22.0 76 126-205 249-325 (383)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 17.8 2.2E+02 0.016 22.4 15.1 13 289-301 190-202 (447)
4 d1iwga8 f.35.1.1 (A:513-566,A: 10.2 2.7E+02 0.02 20.3 6.1 30 269-298 96-125 (222)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 7.8 1.3E+02 0.0093 18.8 2.7 16 292-307 30-45 (91)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 5.7 3.1E+02 0.023 17.0 3.9 16 291-306 40-55 (100)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.9 6E+02 0.044 18.8 5.7 52 82-137 5-56 (248)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 4.0 3E+02 0.022 19.6 3.1 40 261-300 70-109 (199)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.6 5E+02 0.036 16.2 3.7 15 292-306 47-61 (107)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.7 4.1E+02 0.03 13.1 2.9 18 158-175 18-35 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.41 E-value=33 Score=15.83 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019514 159 FGFCAALFGCLATSTKT 175 (340)
Q Consensus 159 ~G~~~~l~~~~~~a~~~ 175 (340)
+|.+...++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 67888888888888875
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=19.03 E-value=2.3e+02 Score=23.03 Aligned_cols=76 Identities=11% Similarity=-0.095 Sum_probs=33.3
Q ss_pred Hhhcccchhhhhhhhhhhhhceeee-cccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Q 019514 126 VWRKYFDWRIWASLVPIVGGILLTS-VTELSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMIL 204 (340)
Q Consensus 126 ~l~e~~~~~~~~~i~l~~~Gv~i~~-~~~~~~~~~G~~~~l~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (340)
+.++|++...... -.++|.+-+. ..+.-..+...+.+.++++..-....+.|+..| -.|+..........+..-.
T Consensus 249 ~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~Gi~G~ 324 (383)
T d1u7ga_ 249 ALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVHGVCGIVGC 324 (383)
T ss_dssp HHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeehhhhHHHHH
Confidence 4556666555432 1223333222 222223334566666655444333333333233 2366666555555444433
Q ss_pred H
Q 019514 205 S 205 (340)
Q Consensus 205 ~ 205 (340)
+
T Consensus 325 l 325 (383)
T d1u7ga_ 325 I 325 (383)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.83 E-value=2.2e+02 Score=22.40 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=5.4
Q ss_pred hhhHHhHhHHHHH
Q 019514 289 GCAITLIGCTFYG 301 (340)
Q Consensus 289 G~~li~~g~~~~~ 301 (340)
+....+.++..+.
T Consensus 190 ~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 190 AFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3334444444443
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.24 E-value=2.7e+02 Score=20.25 Aligned_cols=30 Identities=13% Similarity=-0.061 Sum_probs=21.2
Q ss_pred HHhhhhhhccCcccccchhhhhhHHhHhHH
Q 019514 269 VAVLVSWLIFRNPISGMNAVGCAITLIGCT 298 (340)
Q Consensus 269 ~~~l~~~~~~~e~~s~~~~~G~~li~~g~~ 298 (340)
...+.+..+.+.+++....+|.++.+.-..
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 344566677888999999888887654333
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.83 E-value=1.3e+02 Score=18.76 Aligned_cols=16 Identities=13% Similarity=-0.284 Sum_probs=9.8
Q ss_pred HHhHhHHHHHhhhhhh
Q 019514 292 ITLIGCTFYGYIRHLL 307 (340)
Q Consensus 292 li~~g~~~~~~~~~~~ 307 (340)
+.+.|..+|...+.|+
T Consensus 30 v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 30 IPAILMAVGFAWKYRA 45 (91)
T ss_dssp THHHHHHHTTTTTTTT
T ss_pred HHHHHHHHhhheeeec
Confidence 4556667777655544
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.66 E-value=3.1e+02 Score=16.97 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.7
Q ss_pred hHHhHhHHHHHhhhhh
Q 019514 291 AITLIGCTFYGYIRHL 306 (340)
Q Consensus 291 ~li~~g~~~~~~~~~~ 306 (340)
.+.+.|...|...+.+
T Consensus 40 ~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 40 TIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3445566666655444
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.88 E-value=6e+02 Score=18.82 Aligned_cols=52 Identities=6% Similarity=-0.201 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 019514 82 IFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWA 137 (340)
Q Consensus 82 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~~l~~~~l~e~~~~~~~~ 137 (340)
+..++++..+..+.....+..-+-..+ ....+.+.+..++++.+|.-+.+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehh
Confidence 445566655555544444333332222 2334445556677788887777766
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=3e+02 Score=19.58 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=24.5
Q ss_pred HHhhhhhHHHhhhhhhccCcccccchhhhhhHHhHhHHHH
Q 019514 261 VAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 300 (340)
Q Consensus 261 ~~~~~~~v~~~l~~~~~~~e~~s~~~~~G~~li~~g~~~~ 300 (340)
.....-.+........++|.+++.....+..+.+....-+
T Consensus 70 ~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 70 TIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3333334444455566778888888877777776655544
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.60 E-value=5e+02 Score=16.20 Aligned_cols=15 Identities=13% Similarity=-0.029 Sum_probs=7.7
Q ss_pred HHhHhHHHHHhhhhh
Q 019514 292 ITLIGCTFYGYIRHL 306 (340)
Q Consensus 292 li~~g~~~~~~~~~~ 306 (340)
+.+.|...|...+.+
T Consensus 47 ~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 47 IFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHhhhhh
Confidence 344555666554443
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.68 E-value=4.1e+02 Score=13.07 Aligned_cols=18 Identities=22% Similarity=0.133 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019514 158 MFGFCAALFGCLATSTKT 175 (340)
Q Consensus 158 ~~G~~~~l~~~~~~a~~~ 175 (340)
.+|.++.+.-++.++.|.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777777777766654
Done!