Query 019517
Match_columns 340
No_of_seqs 400 out of 2562
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 4.2E-44 9E-49 330.4 10.3 267 68-334 15-283 (295)
2 cd04670 Nudix_Hydrolase_12 Mem 99.9 3.1E-22 6.6E-27 166.4 12.9 126 167-297 1-126 (127)
3 cd04679 Nudix_Hydrolase_20 Mem 99.8 8.7E-20 1.9E-24 151.2 12.8 111 168-282 2-115 (125)
4 cd03430 GDPMH GDP-mannose glyc 99.8 2.2E-19 4.7E-24 153.2 14.1 117 166-286 10-136 (144)
5 PRK15434 GDP-mannose mannosyl 99.8 3.2E-19 6.9E-24 154.7 14.6 116 167-286 16-141 (159)
6 PRK09438 nudB dihydroneopterin 99.8 1.6E-19 3.4E-24 154.3 11.7 126 167-302 6-146 (148)
7 PRK00714 RNA pyrophosphohydrol 99.8 6.6E-19 1.4E-23 152.3 14.4 127 166-300 6-149 (156)
8 cd04680 Nudix_Hydrolase_21 Mem 99.8 3E-19 6.6E-24 146.3 11.7 108 170-284 2-110 (120)
9 cd03671 Ap4A_hydrolase_plant_l 99.8 4.7E-19 1E-23 151.4 12.8 116 168-287 3-136 (147)
10 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 4.8E-19 1E-23 148.9 12.5 117 168-285 2-118 (137)
11 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.1E-18 2.3E-23 145.3 13.7 114 168-283 2-118 (129)
12 PRK11762 nudE adenosine nucleo 99.8 7.6E-19 1.6E-23 156.0 13.5 153 109-286 7-163 (185)
13 PRK15472 nucleoside triphospha 99.8 1.1E-18 2.4E-23 147.8 13.8 116 171-287 6-130 (141)
14 cd04681 Nudix_Hydrolase_22 Mem 99.8 1E-18 2.2E-23 145.5 12.9 108 170-281 3-114 (130)
15 PF00293 NUDIX: NUDIX domain; 99.8 1.2E-18 2.6E-23 144.5 12.5 120 168-287 2-124 (134)
16 cd04673 Nudix_Hydrolase_15 Mem 99.8 2E-18 4.3E-23 141.7 13.2 113 169-287 1-119 (122)
17 PLN02325 nudix hydrolase 99.8 1.5E-18 3.3E-23 148.1 12.7 117 163-282 4-125 (144)
18 cd04700 DR1025_like DR1025 fro 99.8 2.4E-18 5.2E-23 146.4 13.9 116 167-285 12-128 (142)
19 cd03673 Ap6A_hydrolase Diadeno 99.8 1.8E-18 4E-23 143.5 12.7 120 169-298 2-129 (131)
20 cd04682 Nudix_Hydrolase_23 Mem 99.8 1.3E-18 2.8E-23 143.8 11.5 113 172-285 4-117 (122)
21 cd04677 Nudix_Hydrolase_18 Mem 99.8 2.1E-18 4.6E-23 143.7 12.8 112 166-284 5-124 (132)
22 cd04684 Nudix_Hydrolase_25 Con 99.8 1.8E-18 4E-23 142.9 12.3 114 170-286 2-121 (128)
23 cd03674 Nudix_Hydrolase_1 Memb 99.8 3.2E-18 7E-23 144.7 14.1 121 169-299 3-137 (138)
24 cd04683 Nudix_Hydrolase_24 Mem 99.8 3.5E-18 7.5E-23 140.3 13.7 112 170-285 2-117 (120)
25 cd04696 Nudix_Hydrolase_37 Mem 99.8 2E-18 4.3E-23 143.1 12.4 112 169-287 3-119 (125)
26 cd04669 Nudix_Hydrolase_11 Mem 99.8 5.3E-18 1.1E-22 140.2 14.2 108 171-287 3-119 (121)
27 cd04676 Nudix_Hydrolase_17 Mem 99.8 5.3E-18 1.1E-22 139.9 14.1 112 169-287 3-122 (129)
28 cd03427 MTH1 MutT homolog-1 (M 99.8 5.7E-18 1.2E-22 142.2 14.1 122 171-299 4-125 (137)
29 cd03672 Dcp2p mRNA decapping e 99.8 2.3E-18 5E-23 147.2 11.6 110 170-285 3-114 (145)
30 cd04697 Nudix_Hydrolase_38 Mem 99.8 2.3E-18 5.1E-23 143.3 11.3 112 170-284 2-114 (126)
31 cd04672 Nudix_Hydrolase_14 Mem 99.8 8.6E-18 1.9E-22 139.0 14.1 111 168-287 2-117 (123)
32 cd03426 CoAse Coenzyme A pyrop 99.8 2.9E-18 6.3E-23 148.3 11.4 114 170-284 4-120 (157)
33 cd03675 Nudix_Hydrolase_2 Cont 99.8 8.9E-18 1.9E-22 140.7 14.0 125 170-299 2-128 (134)
34 cd04691 Nudix_Hydrolase_32 Mem 99.8 8E-18 1.7E-22 138.3 12.6 108 171-284 3-110 (117)
35 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.6E-17 3.4E-22 138.3 13.5 114 169-286 2-125 (128)
36 cd04671 Nudix_Hydrolase_13 Mem 99.7 2E-17 4.2E-22 137.5 13.4 108 171-286 3-113 (123)
37 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.2E-17 2.7E-22 138.1 12.2 114 169-285 2-117 (129)
38 PRK15393 NUDIX hydrolase YfcD; 99.7 1.9E-17 4.2E-22 146.5 13.9 130 169-304 38-170 (180)
39 COG1051 ADP-ribose pyrophospha 99.7 2.2E-17 4.7E-22 141.2 13.6 116 166-285 8-125 (145)
40 PRK00241 nudC NADH pyrophospha 99.7 2.5E-17 5.3E-22 153.3 14.9 133 159-301 123-255 (256)
41 PRK10546 pyrimidine (deoxy)nuc 99.7 4.5E-17 9.8E-22 136.4 15.1 123 171-301 6-128 (135)
42 cd03429 NADH_pyrophosphatase N 99.7 1.7E-17 3.6E-22 139.2 12.2 105 171-282 3-107 (131)
43 cd04688 Nudix_Hydrolase_29 Mem 99.7 3.8E-17 8.1E-22 135.5 13.9 110 170-287 3-123 (126)
44 cd04693 Nudix_Hydrolase_34 Mem 99.7 8.4E-18 1.8E-22 139.8 9.6 111 170-284 2-115 (127)
45 cd04692 Nudix_Hydrolase_33 Mem 99.7 1.5E-17 3.2E-22 141.5 10.6 114 170-283 4-128 (144)
46 cd04664 Nudix_Hydrolase_7 Memb 99.7 3E-17 6.5E-22 136.7 11.6 112 170-286 3-122 (129)
47 cd04511 Nudix_Hydrolase_4 Memb 99.7 7.1E-17 1.5E-21 134.9 13.9 111 164-282 9-119 (130)
48 cd04690 Nudix_Hydrolase_31 Mem 99.7 4.8E-17 1E-21 133.0 12.5 107 171-286 3-114 (118)
49 PRK10776 nucleoside triphospha 99.7 1.5E-16 3.2E-21 131.5 15.4 120 171-298 7-126 (129)
50 cd04689 Nudix_Hydrolase_30 Mem 99.7 6E-17 1.3E-21 134.1 12.9 107 169-281 2-113 (125)
51 cd03428 Ap4A_hydrolase_human_l 99.7 3.8E-17 8.2E-22 135.9 11.1 118 170-298 4-128 (130)
52 cd04694 Nudix_Hydrolase_35 Mem 99.7 6.5E-17 1.4E-21 137.9 11.6 115 169-283 2-132 (143)
53 TIGR00586 mutt mutator mutT pr 99.7 3.9E-16 8.5E-21 129.2 15.1 113 170-287 6-118 (128)
54 cd04695 Nudix_Hydrolase_36 Mem 99.7 7.8E-17 1.7E-21 134.9 10.6 106 177-287 11-119 (131)
55 cd04686 Nudix_Hydrolase_27 Mem 99.7 1E-16 2.2E-21 134.4 11.1 107 170-282 2-119 (131)
56 cd02885 IPP_Isomerase Isopente 99.7 1.2E-16 2.6E-21 139.3 11.1 115 169-286 31-152 (165)
57 cd04667 Nudix_Hydrolase_10 Mem 99.7 1.6E-16 3.6E-21 129.2 11.2 103 172-287 4-106 (112)
58 cd03425 MutT_pyrophosphohydrol 99.7 4.3E-16 9.4E-21 127.2 13.7 113 171-288 4-116 (124)
59 PRK10729 nudF ADP-ribose pyrop 99.7 4.5E-16 9.7E-21 140.1 14.6 118 169-287 50-176 (202)
60 cd04666 Nudix_Hydrolase_9 Memb 99.7 2.5E-16 5.5E-21 130.7 11.7 108 171-285 3-118 (122)
61 PRK03759 isopentenyl-diphospha 99.7 2.1E-16 4.5E-21 140.3 11.8 115 169-286 35-156 (184)
62 TIGR00052 nudix-type nucleosid 99.7 3.3E-16 7.1E-21 139.2 11.5 117 169-286 45-169 (185)
63 TIGR02150 IPP_isom_1 isopenten 99.7 3.2E-16 7E-21 135.7 11.1 114 169-287 28-147 (158)
64 PRK15009 GDP-mannose pyrophosp 99.7 1.4E-15 3.1E-20 135.7 13.8 116 169-286 46-170 (191)
65 cd04685 Nudix_Hydrolase_26 Mem 99.7 7.3E-16 1.6E-20 129.9 11.0 113 170-282 2-123 (133)
66 cd02883 Nudix_Hydrolase Nudix 99.6 3.2E-15 6.9E-20 121.0 13.4 112 170-286 2-116 (123)
67 PRK05379 bifunctional nicotina 99.6 1.4E-15 3E-20 147.3 13.1 128 167-299 202-338 (340)
68 PRK10707 putative NUDIX hydrol 99.6 2E-15 4.3E-20 134.7 13.1 114 169-283 31-147 (190)
69 COG2816 NPY1 NTP pyrophosphohy 99.6 1.1E-15 2.3E-20 141.4 9.2 140 137-284 112-253 (279)
70 cd03676 Nudix_hydrolase_3 Memb 99.6 5.4E-15 1.2E-19 130.6 10.8 110 173-283 39-159 (180)
71 cd04661 MRP_L46 Mitochondrial 99.6 4.4E-15 9.5E-20 124.8 8.6 98 178-282 11-120 (132)
72 TIGR02705 nudix_YtkD nucleosid 99.6 4.4E-14 9.5E-19 121.8 14.2 124 169-304 25-152 (156)
73 cd04665 Nudix_Hydrolase_8 Memb 99.5 7.1E-14 1.5E-18 115.4 12.4 100 171-279 3-102 (118)
74 PRK08999 hypothetical protein; 99.5 8.7E-14 1.9E-18 133.0 14.6 112 171-287 8-119 (312)
75 cd04662 Nudix_Hydrolase_5 Memb 99.5 1.8E-13 3.9E-18 113.7 13.7 105 170-276 2-126 (126)
76 cd04674 Nudix_Hydrolase_16 Mem 99.5 4.8E-13 1E-17 110.4 14.0 56 171-229 7-62 (118)
77 PLN02552 isopentenyl-diphospha 99.5 3.3E-13 7.2E-18 124.6 13.7 138 162-301 51-226 (247)
78 PLN02709 nudix hydrolase 99.5 2.6E-13 5.6E-18 123.0 12.7 104 180-283 51-156 (222)
79 PLN03143 nudix hydrolase; Prov 99.5 2.1E-13 4.6E-18 128.4 11.1 113 170-283 130-266 (291)
80 KOG3084 NADH pyrophosphatase I 99.5 1.3E-14 2.8E-19 134.7 1.3 113 164-281 183-297 (345)
81 cd04663 Nudix_Hydrolase_6 Memb 99.4 1.6E-12 3.5E-17 108.2 12.5 106 171-282 3-116 (126)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 3E-12 6.6E-17 113.4 13.8 120 171-300 37-184 (186)
83 PLN02791 Nudix hydrolase homol 99.3 7.5E-12 1.6E-16 131.0 11.5 114 169-282 33-158 (770)
84 COG0494 MutT NTP pyrophosphohy 99.3 5.1E-11 1.1E-15 98.6 12.5 112 171-286 14-138 (161)
85 KOG2839 Diadenosine and diphos 99.2 1.7E-11 3.8E-16 102.4 7.6 126 168-301 9-141 (145)
86 KOG3041 Nucleoside diphosphate 99.1 1E-09 2.2E-14 96.0 11.4 101 180-281 88-193 (225)
87 cd03431 DNA_Glycosylase_C DNA 99.1 2E-09 4.2E-14 87.3 11.5 109 173-295 7-115 (118)
88 KOG3069 Peroxisomal NUDIX hydr 99.0 1.5E-09 3.2E-14 97.7 7.6 112 170-281 45-162 (246)
89 COG1443 Idi Isopentenyldiphosp 98.9 4.7E-09 1E-13 90.4 6.7 116 170-286 35-157 (185)
90 PLN02839 nudix hydrolase 98.7 3.8E-07 8.1E-12 88.0 14.8 170 95-282 148-327 (372)
91 PF14815 NUDIX_4: NUDIX domain 98.7 8.2E-08 1.8E-12 78.2 8.1 106 173-286 2-107 (114)
92 COG4119 Predicted NTP pyrophos 98.5 5.4E-07 1.2E-11 73.8 9.3 124 169-297 4-150 (161)
93 KOG0142 Isopentenyl pyrophosph 97.9 2.1E-05 4.6E-10 69.4 5.0 129 170-299 54-203 (225)
94 KOG4195 Transient receptor pot 97.5 0.0001 2.2E-09 66.0 4.6 67 140-224 109-178 (275)
95 COG4112 Predicted phosphoester 97.5 0.001 2.2E-08 57.0 9.6 109 172-281 65-186 (203)
96 KOG2937 Decapping enzyme compl 97.1 6.6E-05 1.4E-09 71.0 -1.2 101 170-279 84-189 (348)
97 PRK10880 adenine DNA glycosyla 96.8 0.0063 1.4E-07 59.3 9.5 111 170-296 232-342 (350)
98 KOG4432 Uncharacterized NUDIX 96.4 0.011 2.3E-07 55.5 7.2 86 198-283 286-377 (405)
99 KOG4432 Uncharacterized NUDIX 95.2 0.058 1.3E-06 50.7 6.9 86 169-255 27-140 (405)
100 KOG4313 Thiamine pyrophosphoki 95.1 0.071 1.5E-06 48.9 7.0 48 180-227 148-196 (306)
101 COG4111 Uncharacterized conser 94.7 0.18 3.8E-06 46.6 8.3 42 292-333 222-266 (322)
102 PRK13910 DNA glycosylase MutY; 92.8 0.59 1.3E-05 44.5 8.6 27 173-202 191-217 (289)
103 PF13869 NUDIX_2: Nucleotide h 92.8 0.42 9.1E-06 42.5 7.0 49 172-226 48-98 (188)
104 KOG1689 mRNA cleavage factor I 91.4 0.42 9E-06 41.5 5.2 48 172-225 74-123 (221)
105 COG1194 MutY A/G-specific DNA 90.1 0.79 1.7E-05 44.4 6.4 103 162-286 229-331 (342)
106 KOG4548 Mitochondrial ribosoma 85.4 2.1 4.6E-05 39.6 5.9 98 180-283 139-248 (263)
107 TIGR01084 mutY A/G-specific ad 80.7 4.2 9.1E-05 38.4 6.2 32 171-203 230-261 (275)
108 PF03487 IL13: Interleukin-13; 51.5 14 0.00031 24.3 2.1 24 200-223 13-36 (43)
109 PF14443 DBC1: DBC1 49.0 69 0.0015 26.7 6.4 35 195-229 23-60 (126)
110 PF12860 PAS_7: PAS fold 48.1 8.6 0.00019 30.4 0.9 41 171-216 6-46 (115)
111 cd09232 Snurportin-1_C C-termi 40.5 13 0.00028 33.0 1.0 70 146-216 4-79 (186)
112 KOG2937 Decapping enzyme compl 26.2 17 0.00036 35.2 -0.8 76 150-229 217-297 (348)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-44 Score=330.44 Aligned_cols=267 Identities=51% Similarity=0.836 Sum_probs=251.3
Q ss_pred eecccceeecccCCCCcEEEcCCCCCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCccc
Q 019517 68 FSRNLRVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEY 147 (340)
Q Consensus 68 ~~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y 147 (340)
...+..++.|..|+|||++++.-..+.|+..|.+.|+.|+..|+..|++++|++++...+++++.|++.||.|||++.+|
T Consensus 15 ~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~ 94 (295)
T KOG0648|consen 15 MSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLY 94 (295)
T ss_pred cccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccc
Confidence 34556899999999999999997666699999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc
Q 019517 148 LMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT 227 (340)
Q Consensus 148 ~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~ 227 (340)
+|++.|+++.+.++|.++.|+++++++|+|.+++|||++..++.....|.|++|+|.|++||++.++|+||++||||++.
T Consensus 95 ~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ 174 (295)
T KOG0648|consen 95 VMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDT 174 (295)
T ss_pred eeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcch
Confidence 99999999999999999999999999999988999999998777788999999999999999999999999999999999
Q ss_pred eeeEEEEEEeeccCCCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 228 EFVEVIAFRHAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 228 ~~~~~l~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
++.+.+.+++.|...+. +.++||+|.+++.+-+++.+..|+..++|||++|+..++..+...+++.+...|++++...
T Consensus 175 ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~~~~~ 254 (295)
T KOG0648|consen 175 EFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNRLEEF 254 (295)
T ss_pred hhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHHHhhh
Confidence 99999999999988877 8999999999999999999999999999999999999999888778888999999999999
Q ss_pred cCCCCCCcCcccchhhhhhhhhhhcCCCC
Q 019517 306 YCGLYPHQLVSAFDGQTSSLYYNDSDTQD 334 (340)
Q Consensus 306 y~g~~~~~l~~~f~~~~~~ly~~~~~~~~ 334 (340)
|.|+....+++++.++..+||+|..+...
T Consensus 255 ~~~~~~~~l~~~~~~k~~~ly~~~~~~~~ 283 (295)
T KOG0648|consen 255 YLGLTAIVLTTTYTGKESYLYYNEDHANM 283 (295)
T ss_pred cCCccceeccccccCcccccccccchhhh
Confidence 99999999999999999999999877543
No 2
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=3.1e-22 Score=166.41 Aligned_cols=126 Identities=59% Similarity=0.995 Sum_probs=99.8
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
|.++|+++|++++++|||++++.. .++.|.+|||++++||++.+||+||++||||+.+.....++....+...+...
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 77 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKS 77 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCce
Confidence 568899999998899999988632 57899999999999999999999999999999998777776655544445556
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 297 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~ 297 (340)
.++|++.+......+..+++|+.+++|++++++.+.++.+. +.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~ 126 (127)
T cd04670 78 DLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI 126 (127)
T ss_pred eEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence 67777777544444555678889999999999988877654 34555543
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=8.7e-20 Score=151.20 Aligned_cols=111 Identities=21% Similarity=0.334 Sum_probs=85.0
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCce
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQK 245 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~~~~ 245 (340)
+++|+++|++.+++|||++|... ...+.|.+|||++++||++.+||+||++||||+++....+++....... ....
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHW 79 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeE
Confidence 57899999998899999998632 3578999999999999999999999999999999988887765543322 1223
Q ss_pred EEEEEEEEEecCCCcc-cCCcCceeeEEEEeccccccC
Q 019517 246 SDLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~ 282 (340)
..++|++... .+.. ..+++|+.+++|++++++++.
T Consensus 80 ~~~~f~~~~~--~~~~~~~~~~E~~~~~W~~~~~l~~~ 115 (125)
T cd04679 80 VAPVYLAENF--SGEPRLMEPDKLLELGWFALDALPQP 115 (125)
T ss_pred EEEEEEEeec--CCccccCCCccccEEEEeCHHHCCch
Confidence 3445666543 2222 235578999999999999763
No 4
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.82 E-value=2.2e-19 Score=153.24 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=87.6
Q ss_pred cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeecc-C-
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHN-V- 241 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~-~- 241 (340)
++.++|+++|+|.+|+|||+||... +.+|.|.+|||++++||++.+||+||++||||+++... .+++...... .
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~ 87 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNR--PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDN 87 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCC--CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccc
Confidence 4568899999999899999999632 46899999999999999999999999999999998766 6665543211 0
Q ss_pred ----CC--ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 242 ----AF--QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 242 ----~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.. ....++|.|... .+.+...++|+.+++|+++++++++...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 136 (144)
T cd03430 88 FFGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDDVH 136 (144)
T ss_pred cccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCCcC
Confidence 11 123344555542 33444567899999999999999865433
No 5
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.82 E-value=3.2e-19 Score=154.66 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=85.1
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccCC--
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNVA-- 242 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~~-- 242 (340)
+.++|+++|.+++++|||+||.++ +.+|.|++|||++++||++.+||+||++||||+++.. ..+++........
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~ 93 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 93 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCC--CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeeccccc
Confidence 347899999988899999999743 4679999999999999999999999999999998743 2455433221111
Q ss_pred ----Cc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 243 ----FQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 ----~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
+. ...++|.+.. ..+.+.++++|+.+++|++++++.++...+
T Consensus 94 ~~~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~~~ 141 (159)
T PRK15434 94 SGTDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDNVH 141 (159)
T ss_pred CCCccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccccC
Confidence 11 2233444443 345566667799999999999998865443
No 6
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.81 E-value=1.6e-19 Score=154.28 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=90.7
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEe-------
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT--EFVEVIAFRH------- 237 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~--~~~~~l~~~~------- 237 (340)
++++|++++++.+++|||++|.. .++.|++|||++|+||++.+||+||++||||+++ ....++....
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF 81 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence 45789999999999999998852 3578999999999999999999999999999998 4433332110
Q ss_pred e------ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517 238 A------HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 302 (340)
Q Consensus 238 ~------~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l 302 (340)
. .........++|++... . ...++.+|+.+++|++++++.++...+. .+.+++.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~--~-~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~l~~~~~~~ 146 (148)
T PRK09438 82 PHWRHRYAPGVTRNTEHWFCLALP--H-ERPVVLTEHLAYQWLDAREAAALTKSWS---NAEAIEQLVIRL 146 (148)
T ss_pred hhhhhccccccCCceeEEEEEecC--C-CCccccCcccceeeCCHHHHHHHhcChh---HHHHHHHHHHHh
Confidence 0 11112334466666542 1 2223445999999999999999876543 467777776654
No 7
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.80 E-value=6.6e-19 Score=152.29 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=93.7
Q ss_pred cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe--------
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-------- 237 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-------- 237 (340)
.++++|+++++|.+|+|||++|.. .++.|.+|||++++||++.+||.||++||||+++....+++...
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~ 81 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLP 81 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCc
Confidence 355789999999999999999862 25789999999999999999999999999999987777665431
Q ss_pred ------eccCCCceEEEEEEEEEecCCCcccC---CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 238 ------AHNVAFQKSDLFFICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 238 ------~~~~~~~~~~~~f~~~~~~~~~~~~~---~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
......+...++|++........+.+ +++|+.+++|++++|++++..+.. +.+++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~----r~~~~~~~~ 149 (156)
T PRK00714 82 KRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFK----RDVYRRVLK 149 (156)
T ss_pred HHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhh----HHHHHHHHH
Confidence 01112233567788876443333333 346999999999999998766554 444444443
No 8
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3e-19 Score=146.25 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=83.1
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce-eeEEEEEEeeccCCCceEEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE-FVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~-~~~~l~~~~~~~~~~~~~~~ 248 (340)
+|.++++++++++||++|.. .+.|.+|||++++||++.+||+||++||||+.+. ....++.............+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~-----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY-----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVI 76 (120)
T ss_pred ceEEEEECCCCeEEEEEECC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEE
Confidence 57889999889999999862 3389999999999999999999999999999998 77777765544333333344
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
+|.|.. .......+++|+.+++|+++++++++..
T Consensus 77 ~f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 77 VFRARA--DTQPVIRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred EEEecc--cCCCccCCcccEEEEEEECHHHCcccCC
Confidence 455544 3333345678999999999999988533
No 9
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.80 E-value=4.7e-19 Score=151.42 Aligned_cols=116 Identities=28% Similarity=0.425 Sum_probs=86.9
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----ecc--
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHN-- 240 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-----~~~-- 240 (340)
+++|++++++.+++|||++|.+. ++.|.+|||++++||++.+||+||++||||+++....+++... ..+
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~----~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~ 78 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDT----PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE 78 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCC----CCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence 46799999998899999999632 2899999999999999999999999999999987776665321 001
Q ss_pred ---C-----CCceEEEEEEEEEecCCCcccCC---cCceeeEEEEeccccccCCCCCC
Q 019517 241 ---V-----AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 241 ---~-----~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
. ..+...++|++........+..+ ++|+.+++|++++++.++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~ 136 (147)
T cd03671 79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK 136 (147)
T ss_pred hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence 0 11234466666664423333333 47999999999999999876543
No 10
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.80 E-value=4.8e-19 Score=148.94 Aligned_cols=117 Identities=22% Similarity=0.185 Sum_probs=88.1
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
..+|+++++++++++||+++. +.+..++.|.+|||++++||++.+||+||++||||+.+..+..++.............
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~-~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQY-RPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI 80 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEee-ecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence 467899999999999999885 4445678999999999999999999999999999999976666654443332223334
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
.+|++...........++.|+.+++|++++|+.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence 45555553322214456788999999999999876554
No 11
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.1e-18 Score=145.35 Aligned_cols=114 Identities=28% Similarity=0.404 Sum_probs=87.2
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CCCce
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAFQK 245 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--~~~~~ 245 (340)
+++|+++++|++++|||++|..+ ...+.|.+|||++++||++.+||+||++||||+++.....++...... .....
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHY 79 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEE
Confidence 57899999999899999999732 468899999999999999999999999999999988777776544322 12224
Q ss_pred EEEEEEEEEecCCCccc-CCcCceeeEEEEeccccccCC
Q 019517 246 SDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~leel~~~~ 283 (340)
..++|.|.......... .+.+|+.+++|++++++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (129)
T cd04678 80 VTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVD 118 (129)
T ss_pred EEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCcc
Confidence 55667776643222222 145778899999999999873
No 12
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.80 E-value=7.6e-19 Score=156.04 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=112.2
Q ss_pred HHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEEE
Q 019517 109 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVLV 184 (340)
Q Consensus 109 ~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VLL 184 (340)
.|+..+++.| |+++...+..+++ +....|.... .+ +..+|.+++++++++|||
T Consensus 7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~---G~~~~~~~v~----------------~~----~~~~v~v~~~~~~~~vlL 63 (185)
T PRK11762 7 KPEILNRETVAKSRLFRVESVDLEFSN---GVERVYERMR----------------PS----GRGAVMIVPILDDDTLLL 63 (185)
T ss_pred CCEEeeEEEEEeCCEEEEEEEEEEcCC---CCEEEEEEEe----------------cC----CCCEEEEEEEeCCCEEEE
Confidence 6777777777 9999888877776 3323232220 00 113577777888889999
Q ss_pred EEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccCC
Q 019517 185 VQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVD 264 (340)
Q Consensus 185 vqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 264 (340)
+++. +++...+.|++|||.+|+||++.+||+||++||||+++..+..++.+...++......++|++..... .....+
T Consensus 64 vrq~-r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~-~~~~~~ 141 (185)
T PRK11762 64 IREY-AAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYP-ERLEGD 141 (185)
T ss_pred EEee-cCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccc-ccCCCC
Confidence 9985 67778889999999999999999999999999999999999998877766665555555566553221 122345
Q ss_pred cCceeeEEEEeccccccCCCCC
Q 019517 265 DLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 265 ~~E~~~~~Wv~leel~~~~~~~ 286 (340)
+.|..++.|+|++++.++....
T Consensus 142 e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 142 EPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred CCceeEEEEEcHHHHHHHHHcC
Confidence 6777899999999998765543
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.80 E-value=1.1e-18 Score=147.82 Aligned_cols=116 Identities=20% Similarity=0.318 Sum_probs=79.9
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE--EE-----eecc-CC
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA--FR-----HAHN-VA 242 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~--~~-----~~~~-~~ 242 (340)
+.+.+++.+++|||+||...+...+|.|++|||++++||++.+||+||++||||+++....+.. +. .... ..
T Consensus 6 ~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T PRK15472 6 IVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGR 85 (141)
T ss_pred EEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCC
Confidence 4455555678999999876566678999999999999999999999999999999875443221 10 0001 11
Q ss_pred CceE-EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 243 FQKS-DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 243 ~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.... .+++++.+....+.+.+ ++|+.+++|++++|+.++++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~ 130 (141)
T PRK15472 86 KEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVA 130 (141)
T ss_pred ceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHH
Confidence 1111 22233333333344443 47899999999999999987664
No 14
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1e-18 Score=145.53 Aligned_cols=108 Identities=26% Similarity=0.451 Sum_probs=81.5
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--C--Cce
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--A--FQK 245 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~--~~~ 245 (340)
+|++++++++++|||++|... ..+|.|.+|||++++||++.+||+||++||||+++.....++....... . ...
T Consensus 3 av~~~i~~~~~~vLL~~r~~~--~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd04681 3 AVGVLILNEDGELLVVRRARE--PGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDT 80 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCC--CCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEE
Confidence 578889998899999998633 3578999999999999999999999999999999987777654322111 1 112
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~ 281 (340)
..++|+|... ......+.+|+.+++|++++++..
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~ 114 (130)
T cd04681 81 LDLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIEL 114 (130)
T ss_pred EEEEEEEEeC--CCCCcCChHHhheeEEecHHHCCc
Confidence 3346666653 233444567899999999999853
No 15
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.79 E-value=1.2e-18 Score=144.52 Aligned_cols=120 Identities=31% Similarity=0.475 Sum_probs=91.8
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC---c
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF---Q 244 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~---~ 244 (340)
+++|++++++.+++|||++|.......++.|.+|||++++||++.+||+||+.||||+++.....+.......... +
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 4779999999989999999975433467999999999999999999999999999999986666655433322222 2
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
...++|++...........+..|+.+++|++++++.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 124 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR 124 (134)
T ss_dssp EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence 4556666665544334555556999999999999999876553
No 16
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2e-18 Score=141.70 Aligned_cols=113 Identities=28% Similarity=0.473 Sum_probs=83.2
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cc
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ 244 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----~~ 244 (340)
++|+++++++ ++|||++|.+. .+++.|.+|||++++||++.+||+||++||||+++.....++........ ..
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANP--PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVE 77 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCC--CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccc
Confidence 3577888875 79999998632 36789999999999999999999999999999998777776654432211 11
Q ss_pred --eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 245 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 245 --~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
...+.|.+.. ..+.. .+++|+.+++|++++++.++++.+.
T Consensus 78 ~~~~~~~~~~~~--~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~ 119 (122)
T cd04673 78 FHYVLIDFLCRY--LGGEP-VAGDDALDARWVPLDELAALSLTES 119 (122)
T ss_pred eEEEEEEEEEEe--CCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence 2223344443 33333 3457889999999999999887654
No 17
>PLN02325 nudix hydrolase
Probab=99.78 E-value=1.5e-18 Score=148.12 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=85.3
Q ss_pred CCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--
Q 019517 163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-- 240 (340)
Q Consensus 163 ~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-- 240 (340)
.+++++++|+++++++ ++|||++|... .+.|.|.+|||+++.||++.+||+||++||||+++....+++......
T Consensus 4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~--~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~ 80 (144)
T PLN02325 4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS--IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE 80 (144)
T ss_pred CCCCCeEEEEEEEEcC-CEEEEEEecCC--CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence 3456678899888875 69999998632 356899999999999999999999999999999998888877643221
Q ss_pred --CCCceEEEEEEEEEecCCC-cccCCcCceeeEEEEeccccccC
Q 019517 241 --VAFQKSDLFFICMLKPLST-EIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 241 --~~~~~~~~~f~~~~~~~~~-~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
.......++|.+....... ....+++|+.+++|+++++++..
T Consensus 81 ~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 81 EPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 1122344556665432221 12234456788999999999874
No 18
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.78 E-value=2.4e-18 Score=146.35 Aligned_cols=116 Identities=23% Similarity=0.273 Sum_probs=85.8
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC-CCce
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-AFQK 245 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~-~~~~ 245 (340)
...+|+++|++.+++|||++++. +..++.|++|||++++||++.+||+||++||||+++....+++.+..... ....
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~--~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 89 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKG--GPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLV 89 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcC--CCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEE
Confidence 34778999999888999998753 34679999999999999999999999999999999988777765432211 1112
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
..++|++........+ ...+|+.+++|++++++.++...
T Consensus 90 ~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 90 LRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred EEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence 3355666653221122 23478999999999999987543
No 19
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.78 E-value=1.8e-18 Score=143.46 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=87.0
Q ss_pred eEEEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC----
Q 019517 169 VGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV---- 241 (340)
Q Consensus 169 v~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~---- 241 (340)
.++++++++.+ ++|||+++.. .+.|.+|||++++||++.+||+||++||||+++.....++.......
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 76 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGK 76 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCC
Confidence 45788888865 8999999862 37999999999999999999999999999999987776654433222
Q ss_pred CCceEEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517 242 AFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 298 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~ 298 (340)
.......+|.+... ...... +++|+.+++|++++++.++...+. .+.+++.+
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~ 129 (131)
T cd03673 77 RVHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYPN---DRELLRAA 129 (131)
T ss_pred CcceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCHh---HHHHHHHh
Confidence 22234445555542 333333 568899999999999987654332 35666554
No 20
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.3e-18 Score=143.76 Aligned_cols=113 Identities=18% Similarity=0.230 Sum_probs=78.9
Q ss_pred EEEEEeCCceEEEEEeccC-CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 172 GGFVINDNNEVLVVQEKYC-NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 172 ~~lv~~~~~~VLLvqr~~~-~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+++++.++|+|||++|... ...++|.|.+|||+++.||++.+||+||++||||++++...+...............++|
T Consensus 4 ~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f 83 (122)
T cd04682 4 ALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVF 83 (122)
T ss_pred EEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEE
Confidence 3334444599999999754 346789999999999999999999999999999999864333222111111223344556
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
.+...... ....+++|+.+++|++++|+.+....
T Consensus 84 ~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~ 117 (122)
T cd04682 84 VVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA 117 (122)
T ss_pred EEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence 66553222 24456789999999999999876543
No 21
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.1e-18 Score=143.72 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=82.3
Q ss_pred cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec------
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH------ 239 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~------ 239 (340)
.+.++|++++++.+++|||++|. ..+.|.+|||++++||++.+||+||++||||+++.....++.+...
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~-----~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRS-----DTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP 79 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEec-----CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence 34577899999988999999886 2378999999999999999999999999999999887777543211
Q ss_pred -cCCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 240 -NVAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 240 -~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
.... ....+++++.. ....+..+.+|+.+++|++++++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchh
Confidence 1111 12223333332 2333445678899999999999987654
No 22
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.78 E-value=1.8e-18 Score=142.90 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=83.9
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CC-----C
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VA-----F 243 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-~~-----~ 243 (340)
+|.++++++ ++|||+++...+ .++.|.+|||++++||++.+||+||++||||+++....+++...... .. .
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA 78 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence 577888876 899999997432 67999999999999999999999999999999988777776543221 11 1
Q ss_pred ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 244 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 244 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
....++|.+.............+|..+++|++++++.+....+
T Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~ 121 (128)
T cd04684 79 HHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSP 121 (128)
T ss_pred cEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence 2344566666532211113455788899999999998776544
No 23
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.78 E-value=3.2e-18 Score=144.70 Aligned_cols=121 Identities=22% Similarity=0.474 Sum_probs=85.8
Q ss_pred eEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE------EeeccC
Q 019517 169 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF------RHAHNV 241 (340)
Q Consensus 169 v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~------~~~~~~ 241 (340)
.+|+++++|++ ++|||++|. ..|.|.+|||++++||++.+||+||++||||+++......++ ......
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 77 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHR-----KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGH 77 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEc-----CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCC
Confidence 45788899887 999999986 257899999999999999999999999999998765554321 111111
Q ss_pred C------CceEEEEEEEEEecCCCccc-CCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 242 A------FQKSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 242 ~------~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
. .....+.|+|... .+... .+++|+.+++|++++++..+++... .+.++..++
T Consensus 78 ~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~i~~~~ 137 (138)
T cd03674 78 PKRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPED---VRRLVEKAL 137 (138)
T ss_pred CCCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCHH---HHHHHHHHh
Confidence 0 1123345666542 23333 2567999999999999987766442 477777664
No 24
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.5e-18 Score=140.34 Aligned_cols=112 Identities=23% Similarity=0.378 Sum_probs=80.8
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccCC-CceE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVA-FQKS 246 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~~-~~~~ 246 (340)
+|.+++.+ +++|||++|. +.+..+|.|.+|||++++||++.+||+||++||||+.+. .+.+++........ ....
T Consensus 2 ~v~~vi~~-~~~vLL~~r~-~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRA-NTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRI 79 (120)
T ss_pred cEEEEEEE-CCEEEEEEcc-CCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEE
Confidence 46777765 5799999986 344458999999999999999999999999999999986 44555544333222 2344
Q ss_pred EEEEEEEEecCCCcc-cCCcCceeeEEEEeccccccCCCC
Q 019517 247 DLFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
.++|.+... .+.. ..+++|+.+++|++++++.....+
T Consensus 80 ~~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~~ 117 (120)
T cd04683 80 GLFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhcc
Confidence 456666542 2222 234578899999999999876543
No 25
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2e-18 Score=143.13 Aligned_cols=112 Identities=24% Similarity=0.345 Sum_probs=81.9
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--CCC-ce
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--VAF-QK 245 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--~~~-~~ 245 (340)
++|+++|++.+++|||+|+.. ..|.|.+|||++++||++.+||+||++||||+++....++....... ... ..
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA 78 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence 678899999889999998741 46899999999999999999999999999999987776654422211 111 11
Q ss_pred E--EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 246 S--DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 246 ~--~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
. .+.|.+.. ....+. .++|+.+++|++++++.++++.+.
T Consensus 79 ~~~~~~~~~~~--~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~ 119 (125)
T cd04696 79 HFVLFDFFART--DGTEVT-PNEEIVEWEWVTPEEALDYPLNSF 119 (125)
T ss_pred EEEEEEEEEEe--cCCccc-CCcccceeEEECHHHHhcCCCCHH
Confidence 1 22334443 223333 346899999999999999887653
No 26
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=5.3e-18 Score=140.23 Aligned_cols=108 Identities=21% Similarity=0.326 Sum_probs=81.6
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
|++++++++++|||++|... ..+.|.+|||++++||++.+||+||++||||+++....+++.... .+...++|
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~---~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f 75 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP---GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF 75 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC---CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence 67788887789999998532 358899999999999999999999999999999977676665443 12345677
Q ss_pred EEEEecCCCcccC---------CcCceeeEEEEeccccccCCCCCC
Q 019517 251 ICMLKPLSTEIKV---------DDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 251 ~~~~~~~~~~~~~---------~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.|.... +.+.. ++.++.+++|+++++++.+++.+.
T Consensus 76 ~~~~~~--g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p~ 119 (121)
T cd04669 76 LARVIS--GKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRPE 119 (121)
T ss_pred EEEEEC--CeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCCC
Confidence 776532 22211 134567899999999999887653
No 27
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=5.3e-18 Score=139.86 Aligned_cols=112 Identities=30% Similarity=0.475 Sum_probs=82.8
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--c--cCC--
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA--H--NVA-- 242 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~--~--~~~-- 242 (340)
.+|+++++++++++||++|.. .+.|.+|||++++||++.+||+||++||||+++....+++.... + ...
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 77 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG 77 (129)
T ss_pred ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCC
Confidence 568888899889999999862 38999999999999999999999999999999877666543211 1 111
Q ss_pred --CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 243 --FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 243 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.....++|++... ++....+..|..+++|++++++.++.++..
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~~ 122 (129)
T cd04676 78 DVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHPS 122 (129)
T ss_pred CcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCHh
Confidence 1233344555442 333334567888999999999999877654
No 28
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.77 E-value=5.7e-18 Score=142.24 Aligned_cols=122 Identities=19% Similarity=0.267 Sum_probs=86.5
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+.+++.++ ++|||++|..++ ..+.|.+|||++++||++.+||+||++||||+++....+++.............+.+
T Consensus 4 ~~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 4 TLCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 44555554 899999997433 688999999999999999999999999999999988887766554333212223333
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
++......+... +.+|..+++|++++++.++++.+. .+.+++.++
T Consensus 81 ~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 125 (137)
T cd03427 81 VFLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPG---DREWLPLML 125 (137)
T ss_pred EEEECCcccccC-CCCccccceEEcHhhcccccCCCC---cHHHHHHHh
Confidence 333333333333 345667899999999998877654 256666655
No 29
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.77 E-value=2.3e-18 Score=147.20 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=75.2
Q ss_pred EEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 170 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 170 ~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
.+++++++++ ++|||+++. ..+.|+||||++|+||++.+||+||++||||+.+........+. .....+....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~-----~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~-~~~~~~~~~~ 76 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGW-----KSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYI-ELIIRGQNVK 76 (145)
T ss_pred eeEEEEEeCCCCEEEEEEec-----CCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceee-ecccCCcEEE
Confidence 4788888865 799999985 23489999999999999999999999999999986532211111 1112223334
Q ss_pred EEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCC
Q 019517 249 FFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~ 285 (340)
+|++..........+ +++|+.+++|++++++.++...
T Consensus 77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 444432221122222 3578999999999999987554
No 30
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=2.3e-18 Score=143.25 Aligned_cols=112 Identities=19% Similarity=0.333 Sum_probs=85.4
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
++.++++|.+++|||++|.......+|.|++ |||++++||++.+||+||++||||+++..+..++.+............
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK 81 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence 4788999999999999887555557899999 699999999999999999999999999876666554433222222334
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
+|.+.. ...+.++++|+.+++|++++++.++..
T Consensus 82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~ 114 (126)
T cd04697 82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE 114 (126)
T ss_pred EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence 455543 234556678999999999999988654
No 31
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=8.6e-18 Score=139.02 Aligned_cols=111 Identities=29% Similarity=0.506 Sum_probs=84.7
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-----
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----- 242 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----- 242 (340)
.++|+++|+++ ++|||++++ ..+.|.+|||++++||++.+||+||++||||+.+....++++.......
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~-----~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~ 75 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREK-----SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQP 75 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEc-----CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCc
Confidence 47789999986 799999986 2689999999999999999999999999999998766777665432211
Q ss_pred CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.....++|+|... ...+... +|+.+++|++++++.++.++..
T Consensus 76 ~~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~~ 117 (123)
T cd04672 76 YQVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKRN 117 (123)
T ss_pred eEEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCCc
Confidence 1223455666653 3344444 7899999999999998876543
No 32
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.77 E-value=2.9e-18 Score=148.32 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=87.0
Q ss_pred EEEEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 170 GVGGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 170 ~V~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
+|.+++.+.+ ++|||+||......++|.|++|||++++| |++.+||+||++||||+++.....++.........+..
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4666677654 69999999755445789999999999999 99999999999999999998887777654333333444
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
...|++..... ..+.++++|+.+++|++++++.+...
T Consensus 84 v~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~ 120 (157)
T cd03426 84 VTPVVGLVPPP-LPLVLNPDEVAEVFEVPLSFLLDPAN 120 (157)
T ss_pred EEEEEEEECCC-CCCCCCHHHhheeEEEcHHHHhCcCC
Confidence 45566655332 34556777999999999999988643
No 33
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.77 E-value=8.9e-18 Score=140.67 Aligned_cols=125 Identities=20% Similarity=0.223 Sum_probs=85.5
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc--eEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--KSD 247 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~--~~~ 247 (340)
+|++++. .++++||++|.+. .++.|.+|||++++||++.+||.||++||||+++....+++.........+ ...
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLR 77 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEE
Confidence 4666665 4579999998632 568999999999999999999999999999999987777665433222112 223
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
++|++..... ......++|+.++.|++++++.++..........+.+..++
T Consensus 78 ~~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l 128 (134)
T cd03675 78 FAFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYL 128 (134)
T ss_pred EEEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHH
Confidence 4565655321 11113346889999999999998863222223455555554
No 34
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=8e-18 Score=138.32 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=78.2
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
|+++++++ ++|||++|.......+|.|.+|||++++||++.+||+||++||||+++.....+........ ......+|
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY 80 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence 44555554 89999998644335789999999999999999999999999999999766665554433222 22334455
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
.+.. ..+.+ ..+|+.+++|+++++++.++.
T Consensus 81 ~~~~--~~~~~--~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 81 VVTF--WQGEI--PAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred EEEE--ecCCC--CcccccccEEcCHHHcchhhh
Confidence 5543 23333 347899999999999987543
No 35
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.6e-17 Score=138.32 Aligned_cols=114 Identities=25% Similarity=0.406 Sum_probs=80.0
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc--------
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-------- 240 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-------- 240 (340)
++|+++|++ +++|||+++.. . ..+.|.+|||++++||++.+||+||+.||||+.+....++.......
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~-~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHD-D--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELP 77 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEc-C--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCC
Confidence 567888886 57999999852 2 35789999999999999999999999999999987665554432211
Q ss_pred CCCceEEEEEEEEEecCCC-cc-cCCcCceeeEEEEeccccccCCCCC
Q 019517 241 VAFQKSDLFFICMLKPLST-EI-KVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 241 ~~~~~~~~~f~~~~~~~~~-~~-~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.......++|+|....... .. ...+.|..+++|++++++.++++.+
T Consensus 78 ~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 78 GHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred CceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence 1122344566666532111 11 1123456799999999999988765
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2e-17 Score=137.47 Aligned_cols=108 Identities=30% Similarity=0.456 Sum_probs=80.4
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
|++++++.+++|||++|..+ ..++.|.+|||++++||++.+||+||++||||+++....++...... .....++|
T Consensus 3 ~~~vv~~~~~~vLl~~r~~~--~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f 77 (123)
T cd04671 3 VAAVILNNQGEVLLIQEAKR--SCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF 77 (123)
T ss_pred EEEEEEcCCCEEEEEEecCC--CCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence 67788888899999998632 35789999999999999999999999999999999888777654321 22344555
Q ss_pred EEEEecCCCcccC---CcCceeeEEEEeccccccCCCCC
Q 019517 251 ICMLKPLSTEIKV---DDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 251 ~~~~~~~~~~~~~---~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.|... ++.+.. ++.|+.+++|+++++++ +++..
T Consensus 78 ~a~~~--~g~~~~~~~~~~e~~~~~W~~~~el~-~~~~~ 113 (123)
T cd04671 78 TGNIT--GGDLKTEKEADSESLQARWYSNKDLP-LPLRA 113 (123)
T ss_pred EEEEe--CCeEccCCCCCcceEEEEEECHHHCC-Cccch
Confidence 55543 232222 34678899999999993 44433
No 37
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.2e-17 Score=138.10 Aligned_cols=114 Identities=24% Similarity=0.344 Sum_probs=80.9
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC--CceE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA--FQKS 246 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~--~~~~ 246 (340)
++|+++|++++++|||++|.......+|.|++|||++++||++.+||+||++||||+++.....+.....+... ....
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 46788888877999999997444346899999999999999999999999999999998776664322223222 1222
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
.++|.+.. ... ...+++|..+++|++++++..+.++
T Consensus 82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~ 117 (129)
T cd04699 82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD 117 (129)
T ss_pred EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence 23344332 222 2234568889999999998655443
No 38
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.75 E-value=1.9e-17 Score=146.46 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=90.3
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
.++.++|+|++++|||++|.......+|.|. +|||++++||++.+||+|||+||||+.+.....++.+...........
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG 117 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence 4577888998899999988644445577775 799999999999999999999999998766555544333222222223
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCC--CCCCCchHHHHHHHHHHHHhc
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP--LIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~--~~~~~~~~~~il~~~l~~l~~ 304 (340)
.+|.+.. .+...++++|+.+++|++++++.++. +.+. ....+..++.+..+
T Consensus 118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~---~~~~l~~~l~~~~~ 170 (180)
T PRK15393 118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD---SLKALALWLTRNAK 170 (180)
T ss_pred EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc---HHHHHHHHHHhhcc
Confidence 3444443 24455677899999999999999873 3322 23555555555443
No 39
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.75 E-value=2.2e-17 Score=141.20 Aligned_cols=116 Identities=28% Similarity=0.474 Sum_probs=84.1
Q ss_pred cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-Cc
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-FQ 244 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-~~ 244 (340)
.+.++|++++...+ +|||++|.. .+..|.|.+|||++|.||++++||+||++||||+++...++++.+...... .+
T Consensus 8 ~p~~~v~~~i~~~~-~iLLvrR~~--~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~ 84 (145)
T COG1051 8 TPLVAVGALIVRNG-RILLVRRAN--EPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG 84 (145)
T ss_pred CcceeeeEEEEeCC-EEEEEEecC--CCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence 44577888887654 999999974 347789999999999999999999999999999999889988877655432 22
Q ss_pred eEE-EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 245 KSD-LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 245 ~~~-~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
... ++|+... ........+.++...+.|+++++++.++..
T Consensus 85 ~~v~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~ 125 (145)
T COG1051 85 HHVSFLFFAAE-PEGELLAGDGDDAAEVGWFPLDELPELPLP 125 (145)
T ss_pred eEEEEEEEEEe-cCCCcccCChhhHhhcceecHhHccccccc
Confidence 222 2222222 222222233357789999999999986443
No 40
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.75 E-value=2.5e-17 Score=153.32 Aligned_cols=133 Identities=21% Similarity=0.263 Sum_probs=97.8
Q ss_pred CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 019517 159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA 238 (340)
Q Consensus 159 ~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~ 238 (340)
|....++.+.++|.++|. ++++|||+++.. . ..|.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus 123 c~~~~yp~~~paViv~V~-~~~~iLL~rr~~-~--~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~ 198 (256)
T PRK00241 123 CRERYYPRIAPCIIVAVR-RGDEILLARHPR-H--RNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW 198 (256)
T ss_pred CCCEECCCCCCEEEEEEE-eCCEEEEEEccC-C--CCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee
Confidence 444555556666666555 458999999863 2 278999999999999999999999999999999988887765422
Q ss_pred ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
... ....+.|.+.. ..+++.++++|+.+++|++++|++.++... .+.+++++.++++
T Consensus 199 -~~p-~~lm~~f~a~~--~~~~~~~~~~Ei~~a~W~~~del~~lp~~~--sia~~li~~~~~~ 255 (256)
T PRK00241 199 -PFP-HSLMLGFHADY--DSGEIVFDPKEIADAQWFRYDELPLLPPSG--TIARRLIEDTVAL 255 (256)
T ss_pred -cCC-CeEEEEEEEEe--cCCcccCCcccEEEEEEECHHHCcccCCch--HHHHHHHHHHHHh
Confidence 111 23345566654 345566777899999999999998875433 4778888877653
No 41
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.74 E-value=4.5e-17 Score=136.43 Aligned_cols=123 Identities=20% Similarity=0.316 Sum_probs=85.6
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+.+++++.+++|||+||. ..+.+.|.|.+|||++++||++.+||+||++||||+++....+++...+..........+|
T Consensus 6 ~~~~ii~~~~~vLL~~R~-~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (135)
T PRK10546 6 VVAAIIERDGKILLAQRP-AHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW 84 (135)
T ss_pred EEEEEEecCCEEEEEEcc-CCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence 444455667899999986 3445789999999999999999999999999999999876666654433322222222334
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
.+.. ..+.+ ...|..+++|++++++..++++... +.+++.+++.
T Consensus 85 ~~~~--~~~~~--~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~ 128 (135)
T PRK10546 85 HVPD--FHGEL--QAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL 128 (135)
T ss_pred EEEE--ecCcc--cccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence 3432 12222 2346778999999999999887653 5666665544
No 42
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.74 E-value=1.7e-17 Score=139.22 Aligned_cols=105 Identities=27% Similarity=0.363 Sum_probs=80.7
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
|.+++.+++++|||++|.. . ..|.|.+|||++++||++.+||+||++||||+++..+..++..... . .....++|
T Consensus 3 v~i~l~~~~~~vLL~~r~~-~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~-~~~~~~~f 77 (131)
T cd03429 3 VIVLVIDGGDRILLARQPR-F--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-F-PSSLMLGF 77 (131)
T ss_pred EEEEEEeCCCEEEEEEecC-C--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-C-CceEEEEE
Confidence 5666777778999999863 2 3789999999999999999999999999999999877777643221 1 13344566
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
++... .+....+++|+.+++|++++++.++
T Consensus 78 ~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 78 TAEAD--SGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence 66653 3455566789999999999998874
No 43
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.8e-17 Score=135.54 Aligned_cols=110 Identities=18% Similarity=0.311 Sum_probs=81.0
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc----CCCce
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN----VAFQK 245 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~----~~~~~ 245 (340)
.|.++++++ ++|||+++. ..+.|.+|||++++||++.+||+||++||||+++.....++...... .....
T Consensus 3 ~v~~vi~~~-~~vLl~~~~-----~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNP-----DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE 76 (126)
T ss_pred EEEEEEEEC-CEEEEEEeC-----CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence 356666654 599999876 26789999999999999999999999999999998877776543211 11233
Q ss_pred EEEEEEEEEecCCCccc-------CCcCceeeEEEEeccccccCCCCCC
Q 019517 246 SDLFFICMLKPLSTEIK-------VDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~-------~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
..++|.|... .+... .++.|+.+++|++++++..+++.+.
T Consensus 77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p~ 123 (126)
T cd04688 77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE 123 (126)
T ss_pred EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCCc
Confidence 4566666653 22222 2457899999999999998877653
No 44
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=8.4e-18 Score=139.76 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=79.2
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeeccCCCceE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAHNVAFQKS 246 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~--~l~~~~~~~~~~~~~ 246 (340)
.|.+++++++++|||++|...+...+|.|++| ||++++||++ +||+||++||||+++.... .+..+..... +..
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~ 78 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD 78 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence 36788899889999999875555578999998 8999999999 9999999999999976432 3332222111 222
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
..++ +..........++.+|+.+++|++++++.++..
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~ 115 (127)
T cd04693 79 DYYL-FYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG 115 (127)
T ss_pred EEEE-EEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence 2222 222222344556678999999999999987654
No 45
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.5e-17 Score=141.55 Aligned_cols=114 Identities=20% Similarity=0.331 Sum_probs=82.9
Q ss_pred EEEEEEEeCC---ceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccC--
Q 019517 170 GVGGFVINDN---NEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNV-- 241 (340)
Q Consensus 170 ~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~-- 241 (340)
+|.++|+|.+ +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+. .+..++.......
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~ 83 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI 83 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence 3788999976 899999997555567899999 5999999999999999999999999864 3444444332221
Q ss_pred -C--CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517 242 -A--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 242 -~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
. ......+|++......+.+.++++|+.+++|++++++.++.
T Consensus 84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred CCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 1 11234556665532223445667899999999999997654
No 46
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.73 E-value=3e-17 Score=136.68 Aligned_cols=112 Identities=25% Similarity=0.284 Sum_probs=82.8
Q ss_pred EEEEEEEeC--CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----ccCC-
Q 019517 170 GVGGFVIND--NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----HNVA- 242 (340)
Q Consensus 170 ~V~~lv~~~--~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~----~~~~- 242 (340)
.|.+++++. +++|||++|... .+|.|.+|||++++||++.+||+||++||||+.+.....+..... ....
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCC
Confidence 477888887 899999999732 689999999999999999999999999999999876666554321 1111
Q ss_pred -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.....++|++.+.. ......++|+.+++|++++++.++...+
T Consensus 80 ~~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 122 (129)
T cd04664 80 GRVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE 122 (129)
T ss_pred ceEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence 12334556666532 2222345788999999999999876544
No 47
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.73 E-value=7.1e-17 Score=134.94 Aligned_cols=111 Identities=22% Similarity=0.303 Sum_probs=83.3
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCC
Q 019517 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAF 243 (340)
Q Consensus 164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~ 243 (340)
+.++.++|+++++++ ++|||++|... ...|.|.+|||++++||++.+||+||++||||+++....+++.+... ..
T Consensus 9 ~~~~~~~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~ 83 (130)
T cd04511 9 YQNPKIIVGCVPEWE-GKVLLCRRAIE--PRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP--HI 83 (130)
T ss_pred CCCCcEEEEEEEecC-CEEEEEEecCC--CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC--Cc
Confidence 344557778777765 79999998643 36789999999999999999999999999999998766666655432 22
Q ss_pred ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 244 QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 244 ~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
....++|++... ...+. .+.|..+++|+++++++..
T Consensus 84 ~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~~~ 119 (130)
T cd04511 84 SQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIPWD 119 (130)
T ss_pred eEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCCch
Confidence 345567777663 33333 3467889999999999743
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4.8e-17 Score=133.02 Aligned_cols=107 Identities=21% Similarity=0.364 Sum_probs=78.6
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEeeccC-CC--ce
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV-AF--QK 245 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~-~~--~~ 245 (340)
+++++++.++++||++++ ..+.|.+|||++++||++.+||+||++||||+.+.. +..++.+..... .. ..
T Consensus 3 ~~~~v~~~~~~vLl~~r~-----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T cd04690 3 AAALILVRDGRVLLVRKR-----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118)
T ss_pred EEEEEEecCCeEEEEEEC-----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEE
Confidence 566677778899999986 357899999999999999999999999999999877 777665443221 11 22
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
...+|++... . .+. ...|+.+++|++++++...++.+
T Consensus 78 ~~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~ 114 (118)
T cd04690 78 RATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP 114 (118)
T ss_pred EEEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence 3344555432 2 332 34688999999999997766544
No 49
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=1.5e-16 Score=131.46 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=83.5
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+.+++.+++|+|||+||.. .+..+|.|+||||++++||++.+||+||++||||+++.....++...+..........+|
T Consensus 7 ~~~ii~~~~~~vll~rR~~-~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T PRK10776 7 AVGIIRNPNNEIFITRRAA-DAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW 85 (129)
T ss_pred EEEEEECCCCEEEEEEecC-CCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence 4456667778999999863 345789999999999999999999999999999998766555544333222222223344
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 298 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~ 298 (340)
.+... ... +...|..+++|++++++...+++.. .+++++.+
T Consensus 86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~---~~~~~~~~ 126 (129)
T PRK10776 86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPA---NEPIIAKL 126 (129)
T ss_pred EEEEE--CCc--cCCccCCccEEecHHHCccCCCCcc---cHHHHHHH
Confidence 44332 122 2235677889999999999887664 35555543
No 50
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.73 E-value=6e-17 Score=134.15 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=76.3
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cc
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ 244 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----~~ 244 (340)
+.|.+++++ +++|||+++. ..+.|.+|||++++||++.+||+||++||||+++....+++........ ..
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~-----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 75 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVI-----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTH 75 (125)
T ss_pred eEEEEEEEe-CCEEEEEEec-----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEE
Confidence 456777774 6799999985 3568999999999999999999999999999999877777654332211 12
Q ss_pred eEEEEEEEEEecCCCc-ccCCcCceeeEEEEecccccc
Q 019517 245 KSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel~~ 281 (340)
...++|.+........ ....++|+.+++|++++++..
T Consensus 76 ~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04689 76 EINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL 113 (125)
T ss_pred EEEEEEEEEcccccccCCccCccceEEEEEccHHHccc
Confidence 2334555554321111 223356789999999999754
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.72 E-value=3.8e-17 Score=135.91 Aligned_cols=118 Identities=27% Similarity=0.516 Sum_probs=83.9
Q ss_pred EEEEEEEeCCc---eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE---ee-ccCC
Q 019517 170 GVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR---HA-HNVA 242 (340)
Q Consensus 170 ~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~---~~-~~~~ 242 (340)
++++++++.++ +|||++++ . +.|.+|||++++||++.+||+||++||||+++....+++.+ .. ....
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~-----~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 77 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQAS-----Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG 77 (130)
T ss_pred EEEEEEEEecCCCceEEEEEcc-----C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence 46777777443 79999986 2 78999999999999999999999999999999877664211 11 1111
Q ss_pred CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517 243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 298 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~ 298 (340)
......+|++.... ...+..+ +|+.++.|++++++.++..... ++.+++.+
T Consensus 78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~ 128 (130)
T cd03428 78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYED---LKAVLDKA 128 (130)
T ss_pred cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCchh---HHHHHHHh
Confidence 23445667776642 2334444 7899999999999998765432 45666554
No 52
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.5e-17 Score=137.93 Aligned_cols=115 Identities=17% Similarity=0.339 Sum_probs=82.5
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee----EEEEEEeecc----
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV----EVIAFRHAHN---- 240 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~----~~l~~~~~~~---- 240 (340)
++|+++++|.+++|||++|......++|.|.+|||++++||++.+||+||++||||+.+... .+++......
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 46888889999999999997554467899999999999999999999999999999998653 4554332111
Q ss_pred --CC--CceEEEEEEEEEecC----CCcccCCcCceeeEEEEeccccccCC
Q 019517 241 --VA--FQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 241 --~~--~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
.. ......|+++..... ...+.++++|+.+++|++++++.++.
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~ 132 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVV 132 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHH
Confidence 11 223333443332211 11344566899999999999987653
No 53
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.9e-16 Score=129.19 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=82.0
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 249 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~ 249 (340)
.++++++++++++||++|. ..+...|.|++|||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus 6 ~~~~ii~~~~~~vLl~~R~-~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~ 84 (128)
T TIGR00586 6 IAVGIIRNENGEIIITRRA-DGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW 84 (128)
T ss_pred EEEEEEECCCCEEEEEEEe-CCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence 3555666777899999996 455678999999999999999999999999999999987666665444433333333334
Q ss_pred EEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 250 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 250 f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
|.+... .+.. ...+..+++|++++++.+++++..
T Consensus 85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~ 118 (128)
T TIGR00586 85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAA 118 (128)
T ss_pred EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCC
Confidence 444432 2221 234566889999999999888765
No 54
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=7.8e-17 Score=134.88 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=73.5
Q ss_pred eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE---EEEEeeccCCCceEEEEEEEE
Q 019517 177 NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV---IAFRHAHNVAFQKSDLFFICM 253 (340)
Q Consensus 177 ~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~---l~~~~~~~~~~~~~~~~f~~~ 253 (340)
+++++|||++|... .+|.|.+|||++++||++.+||+||++||||+++..... +...............+|++.
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 87 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF 87 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence 46789999999732 578999999999999999999999999999999865422 111122111111223345554
Q ss_pred EecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 254 LKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 254 ~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
... ...+. .++|+.+++|++++++.++...+.
T Consensus 88 ~~~-~~~~~-~~~E~~~~~W~~~~e~~~~~~~~~ 119 (131)
T cd04695 88 VPP-HQEVV-LNHEHTEYRWCSFAEALELAPFPG 119 (131)
T ss_pred ecC-CCccc-cCchhcccEecCHHHHHHhcCChh
Confidence 422 22232 347899999999999998876654
No 55
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1e-16 Score=134.36 Aligned_cols=107 Identities=21% Similarity=0.455 Sum_probs=75.1
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEEEee---ccC----
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAFRHA---HNV---- 241 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~-~~~~~l~~~~~---~~~---- 241 (340)
+|+++|+++ ++|||+++. ..+.|.+|||++++||++.+||+||++||||+.+ .....++.... ...
T Consensus 2 ~~~~ii~~~-~~vLLv~~~-----~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~ 75 (131)
T cd04686 2 AVRAIILQG-DKILLLYTK-----RYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDAD 75 (131)
T ss_pred cEEEEEEEC-CEEEEEEEc-----CCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCc
Confidence 467777764 799999986 2357999999999999999999999999999987 44555554321 111
Q ss_pred CCceEEEEEEEEEecCCCcccCCcCce---eeEEEEeccccccC
Q 019517 242 AFQKSDLFFICMLKPLSTEIKVDDLEI---KGAKWMPFMEFVKQ 282 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~---~~~~Wv~leel~~~ 282 (340)
.+....++|+|...........++.|. ..++|+|++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 76 IFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred eeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 122345678887654333344443333 36899999998764
No 56
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.69 E-value=1.2e-16 Score=139.33 Aligned_cols=115 Identities=16% Similarity=0.289 Sum_probs=84.2
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEEE-EEE-eecc--CCC
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEVI-AFR-HAHN--VAF 243 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~l-~~~-~~~~--~~~ 243 (340)
.+|++++++++++|||++|.......+|.|.+| ||++++||++.+||+||++||||+.+....++ ... .... ...
T Consensus 31 ~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 110 (165)
T cd02885 31 RAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGL 110 (165)
T ss_pred eEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCc
Confidence 457888999999999999976555678999997 89999999999999999999999998766554 221 1111 111
Q ss_pred --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.....+|.+.. .....++.+|+.+++|++++++.++....
T Consensus 111 ~~~~i~~~f~~~~---~~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 111 VEHEIDHVFFARA---DVTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred eeeEEEEEEEEEe---CCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 11234444443 23344567899999999999998865443
No 57
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.6e-16 Score=129.19 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=76.4
Q ss_pred EEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 019517 172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI 251 (340)
Q Consensus 172 ~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~ 251 (340)
++++. .+++|||++|. .|.|.+|||++++||++.+||.||++||||+.+.....+..+.. ......+|+
T Consensus 4 ~~i~~-~~~~vLlv~r~------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~ 72 (112)
T cd04667 4 TVICR-RGGRVLLVRKS------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFV 72 (112)
T ss_pred EEEEe-cCCEEEEEEcC------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEE
Confidence 44444 56899999985 27899999999999999999999999999999877666654322 122345566
Q ss_pred EEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 252 ~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
+.+. .......++|+.+++|++++++.++..+..
T Consensus 73 ~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 106 (112)
T cd04667 73 ASVP--PSAQPKPSNEIADCRWLSLDALGDLNASAA 106 (112)
T ss_pred EEcC--CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence 6542 222333467899999999999998877653
No 58
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.69 E-value=4.3e-16 Score=127.18 Aligned_cols=113 Identities=27% Similarity=0.418 Sum_probs=83.1
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+.++++++++++||++|..+ +..+|.|.+|||+++++|++.+||.||+.||||+++.....++...+..........+|
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~-~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAG-KHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF 82 (124)
T ss_pred EEEEEECCCCEEEEEEeCCC-CCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence 44556677799999998743 36799999999999999999999999999999999877666655443333333333444
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCC
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGD 288 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~ 288 (340)
.+... .... ...|..++.|++++++..++++..+
T Consensus 83 ~~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~ 116 (124)
T cd03425 83 LVELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD 116 (124)
T ss_pred EEeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence 44432 2222 2457789999999999999887763
No 59
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.69 E-value=4.5e-16 Score=140.12 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=91.9
Q ss_pred eEEEEEEEeC-CceEEEEEeccCCCCC-----CCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517 169 VGVGGFVIND-NNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 242 (340)
Q Consensus 169 v~V~~lv~~~-~~~VLLvqr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~ 242 (340)
-+|+++++++ +++|||+++. +++.. +..|++|+|.+|+||++.+||+||+.||||+.+..+..+..+.+.++.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQy-R~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~ 128 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGG 128 (202)
T ss_pred CeEEEEEEECCCCEEEEEEee-ecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCc
Confidence 3577888876 4799999994 66653 368999999999999999999999999999999988888777777777
Q ss_pred CceEEEEEEEEEecC---CCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 243 FQKSDLFFICMLKPL---STEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~---~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.....++|++..... ......+++|..++.|+|++++.++.....
T Consensus 129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~ 176 (202)
T PRK10729 129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK 176 (202)
T ss_pred CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence 777777777764211 112334667888999999999988765443
No 60
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=2.5e-16 Score=130.68 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=77.8
Q ss_pred EEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeeccCC----
Q 019517 171 VGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAHNVA---- 242 (340)
Q Consensus 171 V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~-~~l~~~~~~~~~---- 242 (340)
+++++++.+ ++|||+++. ..+.|.+|||++++||++.+||+||++||||+.+... .+++.+......
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~-----~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~ 77 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSR-----RTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRP 77 (122)
T ss_pred EEEEEEEEcCCceEEEEEEec-----CCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCC
Confidence 566666643 689999986 2378999999999999999999999999999998777 777665443222
Q ss_pred CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC
Q 019517 243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI 285 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~ 285 (340)
.....++|.+..... ....++.|+.+++|++++++.++...
T Consensus 78 ~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 78 PRCEVAVFPLEVTEE--LDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred ceEEEEEEEEEEecc--ccCCcccCceEEEEecHHHHHHhcCC
Confidence 133445565555322 22223456789999999999876543
No 61
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.69 E-value=2.1e-16 Score=140.28 Aligned_cols=115 Identities=13% Similarity=0.286 Sum_probs=83.4
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEee-ccCCC--
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHA-HNVAF-- 243 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~~-l~~~~~-~~~~~-- 243 (340)
.+|++++++++++|||++|.......+|.|.+| ||++++||++.+||+||++||||+++..... ++.+.. .....
T Consensus 35 ~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 114 (184)
T PRK03759 35 LAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGI 114 (184)
T ss_pred eEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCc
Confidence 457888999999999999865555568899987 8999999999999999999999999864432 222211 11111
Q ss_pred --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.....+|++... +.+.++++|+.+++|++++++.++....
T Consensus 115 ~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~~~ 156 (184)
T PRK03759 115 VENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVDAT 156 (184)
T ss_pred eeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence 123345555542 3556677899999999999998865544
No 62
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.67 E-value=3.3e-16 Score=139.17 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=88.8
Q ss_pred eEEEEEEEeC-CceEEEEEeccCCCC-----CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517 169 VGVGGFVIND-NNEVLVVQEKYCNPA-----FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 242 (340)
Q Consensus 169 v~V~~lv~~~-~~~VLLvqr~~~~~~-----~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~ 242 (340)
.+|++++++. +++|||+++. +++. .++.|++|||++|+||++++||+||++||||+.+..+..++.....++.
T Consensus 45 ~~v~vl~~~~~~~~vlLvrq~-R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~ 123 (185)
T TIGR00052 45 NAAAVLLYDPKKDTVVLIEQF-RIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG 123 (185)
T ss_pred CeEEEEEEECCCCEEEEEECc-eeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence 4577888875 4799999985 5544 5778999999999999999999999999999999988887766666666
Q ss_pred CceEEEEEEEEEecCC--CcccCCcCceeeEEEEeccccccCCCCC
Q 019517 243 FQKSDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.....++|++...... .....+++|..++.|++++++.++....
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 5666677777653211 1112244566789999999998875544
No 63
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.67 E-value=3.2e-16 Score=135.75 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=81.8
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceeeE--EEEEEeec-cCCCc
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFVE--VIAFRHAH-NVAFQ 244 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~~--~l~~~~~~-~~~~~ 244 (340)
.+|+++|+|.+++|||+||...+...+|.|++| ||+++.|| .+||+||++||||+++.... .+...... ....+
T Consensus 28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g 105 (158)
T TIGR02150 28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG 105 (158)
T ss_pred EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC
Confidence 447788999999999999976666789999997 79999999 49999999999999986553 23211111 11112
Q ss_pred --eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 245 --KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 245 --~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
....+|.+.. . ..+.++++|+.+++|++++|+.++...++
T Consensus 106 ~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 106 EHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred cEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 2334444443 2 24556667999999999999988765443
No 64
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.66 E-value=1.4e-15 Score=135.67 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=91.8
Q ss_pred eEEEEEEEeC-CceEEEEEeccCCCC------CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517 169 VGVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241 (340)
Q Consensus 169 v~V~~lv~~~-~~~VLLvqr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~ 241 (340)
-+|++++++. +++|+|+++. |++. .+..|++|+|.+|+| ++++||+||+.||||+.+..+..++.+.+.++
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQy-R~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG 123 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQF-RVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPG 123 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcc-cccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCc
Confidence 3577777875 6799999994 7776 677899999999976 69999999999999999999988887777777
Q ss_pred CCceEEEEEEEEEecC--CCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 242 AFQKSDLFFICMLKPL--STEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
......++|++..... ......+++|..++.|+|++|+.++....
T Consensus 124 ~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 124 GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 7777777787775321 12223456788899999999998876544
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=7.3e-16 Score=129.86 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=79.1
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc-eeeEEEEE----EeeccCCCc
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT-EFVEVIAF----RHAHNVAFQ 244 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~-~~~~~l~~----~~~~~~~~~ 244 (340)
++.+++++.+++|||+++........+.|.+|||++++||++.+||.||++||||+.+ .....+.. +........
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~ 81 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence 4788999999999999986432246789999999999999999999999999999988 44444322 112222223
Q ss_pred eEEEEEEEEEecCCCc-cc--CC-cCceeeEEEEeccccccC
Q 019517 245 KSDLFFICMLKPLSTE-IK--VD-DLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~-~~--~~-~~E~~~~~Wv~leel~~~ 282 (340)
...++|++........ .. .. ..++.+++|++++++.+.
T Consensus 82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 4556777776421111 11 11 234568999999999886
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.65 E-value=3.2e-15 Score=121.00 Aligned_cols=112 Identities=26% Similarity=0.476 Sum_probs=80.9
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--CCceEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV--AFQKSD 247 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~--~~~~~~ 247 (340)
++++++++.++++||++|... ..|.|.+|||+++.||++.++|+||+.||+|+.+.....+........ ......
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVV 78 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEE
Confidence 467888888789999998732 579999999999999999999999999999998865444443332222 223344
Q ss_pred EEEEEEEecCCCcc-cCCcCceeeEEEEeccccccCCCCC
Q 019517 248 LFFICMLKPLSTEI-KVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 248 ~~f~~~~~~~~~~~-~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.+|.+.... ... ..++.|..+.+|++++++.++....
T Consensus 79 ~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~~l~~~~~~~ 116 (123)
T cd02883 79 FVFLARLVG--GEPTLLPPDEISEVRWVTLDELPALALSP 116 (123)
T ss_pred EEEEEEeCC--CCcCCCCCCccceEEEEcHHHCccccccc
Confidence 455555432 222 2455778899999999998865543
No 67
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.65 E-value=1.4e-15 Score=147.34 Aligned_cols=128 Identities=22% Similarity=0.347 Sum_probs=84.9
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE------E-eec
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF------R-HAH 239 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~------~-~~~ 239 (340)
..++|+++++. +|+|||++|... ++.|.|.+|||++++||++.+||+||++||||+++....+.+. + .+.
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~ 278 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG 278 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCC--CCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCC
Confidence 34777777775 579999998643 3689999999999999999999999999999998754433221 1 111
Q ss_pred cCCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC-CCCCCchHHHHHHHHH
Q 019517 240 NVAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICI 299 (340)
Q Consensus 240 ~~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~-~~~~~~~~~~il~~~l 299 (340)
.... ....++|++............++|..+++|++++++..++ ....++ ..++..++
T Consensus 279 r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh--~~ii~~~~ 338 (340)
T PRK05379 279 RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDH--FQIITHFL 338 (340)
T ss_pred CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHH--HHHHHHHh
Confidence 1111 2345566666532211111234688999999999998752 122333 55665544
No 68
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.64 E-value=2e-15 Score=134.68 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=84.6
Q ss_pred eEEEEEEEe--CCceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517 169 VGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 245 (340)
Q Consensus 169 v~V~~lv~~--~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~ 245 (340)
.+++++++. +++.||++||........|.|+||||.+|+| |++.+||+||++||||+.+..+..++.........+.
T Consensus 31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~ 110 (190)
T PRK10707 31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY 110 (190)
T ss_pred CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence 445555553 4568999998755555789999999999985 6799999999999999999998888776544344444
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
....+++.+.. .....++++|..++.|+|++++.++.
T Consensus 111 ~~~~~v~~~~~-~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 111 QVTPVVGIIPP-DLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEEEEECC-CCCCCCChhhhheEEEEeHHHHhCcc
Confidence 44445454432 23445677899999999999998875
No 69
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.1e-15 Score=141.44 Aligned_cols=140 Identities=25% Similarity=0.334 Sum_probs=105.9
Q ss_pred cccccccCcccccccccccCCC-CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHH
Q 019517 137 GFKYHHAEPEYLMLTYWIPDGP-CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGA 215 (340)
Q Consensus 137 ~f~~h~~~~~y~~l~~w~~~~~-~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAA 215 (340)
.|.-+.-.+.+.....|...++ |....++..-+.|.++|.+.+ ++||.++.+ + .+|.+.+-+|+||+|||+++|+
T Consensus 112 RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~-h--~~g~yS~LAGFVE~GETlE~AV 187 (279)
T COG2816 112 RFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPR-H--FPGMYSLLAGFVEPGETLEQAV 187 (279)
T ss_pred cCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCC-C--CCcceeeeeecccCCccHHHHH
Confidence 3433334667777777877654 556667777787777777665 488888763 2 4899999999999999999999
Q ss_pred HHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccc-cccCCC
Q 019517 216 VREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFME-FVKQPL 284 (340)
Q Consensus 216 iREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~lee-l~~~~~ 284 (340)
+||++||+||+++.+.+++ +.+.++..+. +..|.....+++++++..|+.+++|++.+| ++.++-
T Consensus 188 ~REv~EE~Gi~V~~vrY~~---SQPWPfP~SL-Migf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 188 AREVFEEVGIKVKNVRYVG---SQPWPFPHSL-MLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred HHHHHHhhCeEEeeeeEEe---ccCCCCchhh-hhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence 9999999999999888776 5666666433 233333345788999999999999999999 555553
No 70
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.60 E-value=5.4e-15 Score=130.62 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=78.4
Q ss_pred EEEEeCC--ceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceeeE---EEEE---Eee-ccCC
Q 019517 173 GFVINDN--NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFVE---VIAF---RHA-HNVA 242 (340)
Q Consensus 173 ~lv~~~~--~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~---~l~~---~~~-~~~~ 242 (340)
+++.|.+ ++||+.||...+..++|.|+ +|||++++||++.+||+||++||||+++.... .++. ... ....
T Consensus 39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~ 118 (180)
T cd03676 39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG 118 (180)
T ss_pred EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence 4456665 89999999888888999995 99999999999999999999999999987533 2321 111 1111
Q ss_pred -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517 243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
.....++|.+... ....+.++++|+.++.|++++|+.++.
T Consensus 119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 1122333444432 222345677899999999999998654
No 71
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.59 E-value=4.4e-15 Score=124.75 Aligned_cols=98 Identities=26% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEE-----EEeec-c------CCCce
Q 019517 178 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIA-----FRHAH-N------VAFQK 245 (340)
Q Consensus 178 ~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~-----~~~~~-~------~~~~~ 245 (340)
+++++||+++.++ ..|.|.||||++++||++.+||+||++||||+.+.. .+++ .+... + ...+.
T Consensus 11 ~~~~~Llvk~~~~---~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (132)
T cd04661 11 DDTLVLLVQQKVG---SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGA 86 (132)
T ss_pred cCcEEEEEEeecC---CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCccc
Confidence 4578999998632 368999999999999999999999999999998764 2222 11110 0 11123
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
...+|.|.. .++.+.+ .+|+.+++|++++|+.++
T Consensus 87 ~~~~f~~~~--~~g~~~~-~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 87 KVFFFKARY--MSGQFEL-SQNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEEEEEE--ecCcccc-CCCcceeEecCHHHHHhh
Confidence 345555554 3444443 378899999999999875
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.58 E-value=4.4e-14 Score=121.82 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=89.5
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
..|.+++.++ +++||+++. ...|++|||++|+||++.+||+||++||||+.+..+.+++.+............
T Consensus 25 ~~V~ii~~~~-~~~LL~~~~------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~ 97 (156)
T TIGR02705 25 NHVLVIPRYK-DQWLLTEHK------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKD 97 (156)
T ss_pred CEEEEEEEEC-CEEEEEEEc------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEE
Confidence 4566666654 489999875 235999999999999999999999999999999999999887776655455566
Q ss_pred EEEEEEecCCCcccCCcCceeeEE-EEeccccccCCCCCCC---chHHHHHHHHHHHHhc
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAK-WMPFMEFVKQPLIQGD---CMFKKVIDICIARLRK 304 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~-Wv~leel~~~~~~~~~---~~~~~il~~~l~~l~~ 304 (340)
+|++..... . .. +|..+.. ++++++++++....+. -+-...+..++++++.
T Consensus 98 vf~A~~~~~--~--~~-~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~~ 152 (156)
T TIGR02705 98 VYFAEVSAL--E--SK-DDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAKH 152 (156)
T ss_pred EEEEEEecc--c--cC-CCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHHH
Confidence 677766422 2 12 4545555 7999999876654431 1335567777777643
No 73
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.55 E-value=7.1e-14 Score=115.38 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=75.4
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
|.+++++ ++++||+++. .+.|++|||++++||++.+||+||++||||+.+....+++.+............+|
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y 75 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVY 75 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEE
Confidence 4556665 4799999875 35799999999999999999999999999999988888887665544334455566
Q ss_pred EEEEecCCCcccCCcCceeeEEEEecccc
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEF 279 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel 279 (340)
++.... ........|+..+.|++.+..
T Consensus 76 ~a~~~~--~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 76 PAVSAQ--LEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEEEe--cccccccccccCcEEeccCCc
Confidence 665532 222234589999999997655
No 74
>PRK08999 hypothetical protein; Provisional
Probab=99.54 E-value=8.7e-14 Score=133.04 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=81.1
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+.+++++.+++|||++|. ..+.++|.|++|||++++||++.+||.||++||||+.+.....+....+..........+|
T Consensus 8 ~~~vi~~~~~~vLL~kR~-~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y 86 (312)
T PRK08999 8 AAGVIRDADGRILLARRP-EGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR 86 (312)
T ss_pred EEEEEECCCCeEEEEEec-CCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence 445566777899999986 3456789999999999999999999999999999999876655544433333323233344
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.+... .+. +...|..+++|++++++.+++++..
T Consensus 87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~ 119 (312)
T PRK08999 87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPA 119 (312)
T ss_pred EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcc
Confidence 44331 222 2345677899999999999888765
No 75
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.53 E-value=1.8e-13 Score=113.74 Aligned_cols=105 Identities=23% Similarity=0.233 Sum_probs=65.7
Q ss_pred EEEEEEEe---CCceEEEEEeccC--CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517 170 GVGGFVIN---DNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ 244 (340)
Q Consensus 170 ~V~~lv~~---~~~~VLLvqr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~ 244 (340)
++++++++ +..+|||++|... .....+.|++|||+++.||++.+||+||++||||+++. ...+..... ....+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence 35666765 2347999987421 01357889999999999999999999999999999875 222221111 11112
Q ss_pred eEEEEEEEE--------------EecCCCcccCC-cCceeeEEEEec
Q 019517 245 KSDLFFICM--------------LKPLSTEIKVD-DLEIKGAKWMPF 276 (340)
Q Consensus 245 ~~~~~f~~~--------------~~~~~~~~~~~-~~E~~~~~Wv~l 276 (340)
....+|++. +...+++.... .+|..+++|+|+
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI 126 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence 223333332 22223333333 478899999984
No 76
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=4.8e-13 Score=110.38 Aligned_cols=56 Identities=32% Similarity=0.406 Sum_probs=43.9
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF 229 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~ 229 (340)
+++++...+ .+||++|... ...|.|.||||++++||++.+||+||+.||||+++..
T Consensus 7 av~vl~~~~-~~lL~~r~~~--~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 7 VVALLPVDD-GLLVIRRGIE--PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred EEEEEEECC-CEEEEEeecC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 334444444 5777776532 3579999999999999999999999999999998763
No 77
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.50 E-value=3.3e-13 Score=124.56 Aligned_cols=138 Identities=15% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCC-----------------HHHHHHHHHHHHh
Q 019517 162 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEE-----------------IFKGAVREVKEET 223 (340)
Q Consensus 162 p~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAAiREv~EET 223 (340)
+.+-.|++ +.++|+|.+|++||+||...+..++|.|+.. +||+..||+ ..+||+||++|||
T Consensus 51 ~~gl~Hra-~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EEl 129 (247)
T PLN02552 51 PRGLLHRA-FSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHEL 129 (247)
T ss_pred CCCceEEE-EEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHh
Confidence 33445554 8899999999999999988888899999776 466655432 6789999999999
Q ss_pred CCccee-----eEEEEEEee-ccCC--------C-c-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC-CC
Q 019517 224 GVDTEF-----VEVIAFRHA-HNVA--------F-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL-IQ 286 (340)
Q Consensus 224 Gi~~~~-----~~~l~~~~~-~~~~--------~-~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~-~~ 286 (340)
||.+.. +.+++.+.. .... . . ..+.+++ ........+.++++|+.+++|++++|+.++.. .+
T Consensus 130 GI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~-~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~ 208 (247)
T PLN02552 130 GIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLF-IRPVRDVKVNPNPDEVADVKYVNREELKEMMRKES 208 (247)
T ss_pred CCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEE-EEecCCCcccCCHHHhheEEEEeHHHHHHHHhhcC
Confidence 999643 333432211 1111 1 1 2222222 22222346778889999999999999988632 11
Q ss_pred ---CCchHHHHHHHHHHH
Q 019517 287 ---GDCMFKKVIDICIAR 301 (340)
Q Consensus 287 ---~~~~~~~il~~~l~~ 301 (340)
-...++.+++.++..
T Consensus 209 ~~~~tpw~~~~~~~~l~~ 226 (247)
T PLN02552 209 GLKLSPWFRLIVDNFLMK 226 (247)
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 122566666665543
No 78
>PLN02709 nudix hydrolase
Probab=99.50 E-value=2.6e-13 Score=122.98 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=81.4
Q ss_pred ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEec-C
Q 019517 180 NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKP-L 257 (340)
Q Consensus 180 ~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~-~ 257 (340)
.+|||++|.......+|.|.||||++|+| +++.+||+||+.||+|+.....++++.........+....-|++.+.. .
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 48999999865556899999999999996 578999999999999999988888887665555555555556665532 1
Q ss_pred CCcccCCcCceeeEEEEeccccccCC
Q 019517 258 STEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 258 ~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
.....++++|+.++.|+|++++.+..
T Consensus 131 ~~~~~~np~EV~~vf~vPL~~ll~~~ 156 (222)
T PLN02709 131 AFKPLPNPAEVEEIFDVPLEMFLKDK 156 (222)
T ss_pred CccccCChhhhheeEEecHHHHhCCc
Confidence 23444677899999999999997644
No 79
>PLN03143 nudix hydrolase; Provisional
Probab=99.48 E-value=2.1e-13 Score=128.40 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=77.4
Q ss_pred EEEEEEE-eCCce--EEEEEeccCCCCCCCceEcceeeecC-CCCHHHHHHHHHHHHhCCccee--eEEEE---------
Q 019517 170 GVGGFVI-NDNNE--VLVVQEKYCNPAFAGLWKLPTGFIDE-SEEIFKGAVREVKEETGVDTEF--VEVIA--------- 234 (340)
Q Consensus 170 ~V~~lv~-~~~~~--VLLvqr~~~~~~~~g~W~lPGG~ve~-GEs~~eAAiREv~EETGi~~~~--~~~l~--------- 234 (340)
+|+++++ +.+++ |+|++|. +++.+...|++|||.+|+ +|++.+||+||++||||+.+.. +..+.
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~-R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~ 208 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQV-RVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC 208 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeE-ecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence 4555554 44444 8999885 777778899999999997 5899999999999999998643 33332
Q ss_pred EEeeccCCCceEEEEEEEEEecCC-------C--cccCCcCceeeEEEEeccccccCC
Q 019517 235 FRHAHNVAFQKSDLFFICMLKPLS-------T--EIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 235 ~~~~~~~~~~~~~~~f~~~~~~~~-------~--~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
.+.+.++.......+|++...... . ....++.|..++.|++++++..+.
T Consensus 209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 233444444445556665443211 1 112356788899999999998775
No 80
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.46 E-value=1.3e-14 Score=134.75 Aligned_cols=113 Identities=24% Similarity=0.339 Sum_probs=80.1
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-
Q 019517 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA- 242 (340)
Q Consensus 164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~- 242 (340)
|++..+.|..++++.+++.+|..|..++ .+|.|..++|++|+||+++|||+||++||||++++.+.+.. ..+.+
T Consensus 183 yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~a---sQPWP~ 257 (345)
T KOG3084|consen 183 YPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVA---SQPWPL 257 (345)
T ss_pred ccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeee---cCCCCC
Confidence 4444455777888877655544444344 57899999999999999999999999999999998887554 44444
Q ss_pred CceEEEEEEEEEecCCCcccCCcC-ceeeEEEEecccccc
Q 019517 243 FQKSDLFFICMLKPLSTEIKVDDL-EIKGAKWMPFMEFVK 281 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~~~~~~~-E~~~~~Wv~leel~~ 281 (340)
++.+.+...+.+...++.+..+.+ |.++++|++.+|+.+
T Consensus 258 ~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 258 MPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred CchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence 333322222222233467777776 999999999988754
No 81
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.44 E-value=1.6e-12 Score=108.25 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=61.7
Q ss_pred EEEEEEeCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE-EEEEeeccCCCceEE
Q 019517 171 VGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV-IAFRHAHNVAFQKSD 247 (340)
Q Consensus 171 V~~lv~~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~-l~~~~~~~~~~~~~~ 247 (340)
|.+++.+.++ +||+.+.. . +.|++|||.+++||++.+||+||++||||+++..... ...............
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~-----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP-----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFW 76 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC-----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEE
Confidence 4455555443 66666553 2 4599999999999999999999999999999732221 122111111122233
Q ss_pred EEEEEEEe---cCC--CcccCCcCceeeEEEEeccccccC
Q 019517 248 LFFICMLK---PLS--TEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 248 ~~f~~~~~---~~~--~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
.++++... +.. +....++.+...+.|++++++...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~~ 116 (126)
T cd04663 77 HLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLDE 116 (126)
T ss_pred EEEEEEecCCCcccccCcccCCCCceEEEEEEcccccccc
Confidence 33334331 111 111222333445569999999654
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.42 E-value=3e-12 Score=113.43 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=72.1
Q ss_pred EEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeE----------------
Q 019517 171 VGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVE---------------- 231 (340)
Q Consensus 171 V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~---------------- 231 (340)
.++++.+. .-+||+++|. ..|.|.+|||++++||++.+||+||+.||||+.+....
T Consensus 37 ~~~i~~~~~~~~l~vLl~~r~-----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~ 111 (186)
T cd03670 37 DGSIHPKSGKPILQFVAIKRP-----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKD 111 (186)
T ss_pred CEEEEecCCCCeeEEEEEEeC-----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhccc
Confidence 34455543 2378888885 36899999999999999999999999999976531110
Q ss_pred EEEEE-eeccCCC----c-eEEEEEEEEEecC--CCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 232 VIAFR-HAHNVAF----Q-KSDLFFICMLKPL--STEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 232 ~l~~~-~~~~~~~----~-~~~~~f~~~~~~~--~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
.+..+ .....+. . ...+.|.+..... .....+ ..+|..+++|+++++++.+.+ +| .+|++.+++
T Consensus 112 ~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~---dH--~~Il~~a~~ 184 (186)
T cd03670 112 GVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYA---NH--SQFLKKVAE 184 (186)
T ss_pred ccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccccc---CH--HHHHHHHHH
Confidence 11111 1111111 1 1233333332110 011112 246788999999999986544 44 677776654
No 83
>PLN02791 Nudix hydrolase homolog
Probab=99.32 E-value=7.5e-12 Score=131.01 Aligned_cols=114 Identities=18% Similarity=0.390 Sum_probs=82.9
Q ss_pred eEEEEEEEeC-CceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCccee--eEEEEEEee----cc
Q 019517 169 VGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEF--VEVIAFRHA----HN 240 (340)
Q Consensus 169 v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~--~~~l~~~~~----~~ 240 (340)
.++.++++|. +++|||+||...+..++|.|++ ||||++.||+..+||+||+.||+||.+.. ..+++.+.. ..
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~ 112 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND 112 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence 3488999996 6899999998888889999999 79999999999999999999999998542 344443211 11
Q ss_pred CCCc--eEEEEEEEEEe-cC-CCcccCCcCceeeEEEEeccccccC
Q 019517 241 VAFQ--KSDLFFICMLK-PL-STEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 241 ~~~~--~~~~~f~~~~~-~~-~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
..+. ....+|++... +. ..++.++++|+.+++|++++|+.++
T Consensus 113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence 1111 23334444321 11 1256678899999999999999744
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.29 E-value=5.1e-11 Score=98.56 Aligned_cols=112 Identities=29% Similarity=0.454 Sum_probs=70.5
Q ss_pred EEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHH-HHHHHHHHHhCCcce--eeEEEEEEeeccCCCc--
Q 019517 171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFK-GAVREVKEETGVDTE--FVEVIAFRHAHNVAFQ-- 244 (340)
Q Consensus 171 V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~e-AAiREv~EETGi~~~--~~~~l~~~~~~~~~~~-- 244 (340)
+.+++.... ++||++++... .+.|.+|||++++||++.+ ||+||++||||+.+. ....++.+........
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~----~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 89 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDD----GGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSV 89 (161)
T ss_pred EEEEEecCCCCEEeEEEcccc----CCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccc
Confidence 344444333 78999988632 1699999999999999988 999999999999988 4555554443332221
Q ss_pred --eEEE-EEEEEEec-CCCcccCC---cCceeeEEEEeccccccCCCCC
Q 019517 245 --KSDL-FFICMLKP-LSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 245 --~~~~-~f~~~~~~-~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.... ++.+.... ........ ..|...+.|+++.++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161)
T COG0494 90 GGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161)
T ss_pred cceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccccc
Confidence 1222 22222111 11111111 2578899999999988765543
No 85
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-11 Score=102.38 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=80.3
Q ss_pred eeEEEEEEEeCCc---eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-eccCC-
Q 019517 168 QVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-AHNVA- 242 (340)
Q Consensus 168 ~v~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-~~~~~- 242 (340)
+..++++++..++ +|||++-.+ .+..|-+|+|++|+||+..+||+||+.||.|+.......++... .....
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~ 84 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKH 84 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCC----CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhh
Confidence 3556777777433 899998763 35679999999999999999999999999999988777443322 21111
Q ss_pred Cce-EEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 243 FQK-SDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 243 ~~~-~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
... ....|...... ..+.-+ ...|..+.+|+.++|.....- +..++..+..+++.
T Consensus 85 ~~~~k~~~~~l~v~e-~le~wp~~~~~~r~r~W~~ledA~~~~~---~~~m~~al~e~~~~ 141 (145)
T KOG2839|consen 85 RTKPKGVMYVLAVTE-ELEDWPESEHEFREREWLKLEDAIELCQ---HKWMKAALEEFLQF 141 (145)
T ss_pred cccccceeehhhhhh-hcccChhhhcccceeEEeeHHHHHHHHh---hHHHHHHHHHHHHH
Confidence 111 11233322211 111111 234588999999999877543 33455555555544
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.09 E-value=1e-09 Score=96.04 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=69.5
Q ss_pred ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceEEEEEEEEEe-c
Q 019517 180 NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKSDLFFICMLK-P 256 (340)
Q Consensus 180 ~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~-~ 256 (340)
-.++|+++. +++.++-..++|+|.||.||++..||+|||+||||+.-... ....+..+..+......+.+..... +
T Consensus 88 ~~ivL~kQf-RpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~p 166 (225)
T KOG3041|consen 88 PYIVLVKQF-RPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVP 166 (225)
T ss_pred EEEEEEEee-cCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCc
Confidence 358888884 88888889999999999999999999999999999985433 3344444433222233333333332 1
Q ss_pred CCC--cccCCcCceeeEEEEecccccc
Q 019517 257 LST--EIKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 257 ~~~--~~~~~~~E~~~~~Wv~leel~~ 281 (340)
.+. ...+++.|..++.-+++.+|.+
T Consensus 167 Enqrp~q~ledgEfIev~~i~~~~L~~ 193 (225)
T KOG3041|consen 167 ENQRPVQQLEDGEFIEVFLIPLSELWR 193 (225)
T ss_pred cccCccccCCCCceEEEEEeeHHHHHH
Confidence 111 1234568899999999988865
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.07 E-value=2e-09 Score=87.28 Aligned_cols=109 Identities=18% Similarity=0.311 Sum_probs=73.7
Q ss_pred EEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 019517 173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 252 (340)
Q Consensus 173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~ 252 (340)
++++..++++||.||. ..+.++|.|+||+|.++.+|+..++..||+.||.++ ....++...+..+.+.....+|.+
T Consensus 7 ~~ii~~~~~~ll~kR~-~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~ 82 (118)
T cd03431 7 VVVIRNDGRVLLEKRP-EKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLA 82 (118)
T ss_pred EEEEecCCeEEEEECC-CCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEE
Confidence 3334456899999996 567889999999999999999999999999998775 122233333333444434445555
Q ss_pred EEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHH
Q 019517 253 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVI 295 (340)
Q Consensus 253 ~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il 295 (340)
.... +. .+..+++|++++++.+++++.. +++++
T Consensus 83 ~~~~--~~-----~~~~~~~W~~~eel~~~~~p~~---~~kil 115 (118)
T cd03431 83 RLEG--DL-----LAPDEGRWVPLEELDEYALPTV---MRKIL 115 (118)
T ss_pred EEeC--CC-----cCccccEEccHHHHhhCCCCHH---HHHHH
Confidence 4421 11 2345779999999999877543 44544
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.97 E-value=1.5e-09 Score=97.66 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=79.2
Q ss_pred EEEEEEEeC-C--ceEEEEEeccCCCCCCCceEcceeeecCC-CCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517 170 GVGGFVIND-N--NEVLVVQEKYCNPAFAGLWKLPTGFIDES-EEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 245 (340)
Q Consensus 170 ~V~~lv~~~-~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~G-Es~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~ 245 (340)
+|.+.+++. + -+|||.+|...-..++|.-.||||..|+. ++-.++|.||.+||.|++.+....++...+.....+.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~ 124 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGW 124 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCc
Confidence 355555543 2 47999999876677899999999999984 5677899999999999999877777654443333332
Q ss_pred EEEEEEEEEecCC--CcccCCcCceeeEEEEecccccc
Q 019517 246 SDLFFICMLKPLS--TEIKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 246 ~~~~f~~~~~~~~--~~~~~~~~E~~~~~Wv~leel~~ 281 (340)
...-+++.+.... ....+...|..++.|+|++++..
T Consensus 125 ~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 125 SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 3322333322211 34556789999999999999975
No 89
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.87 E-value=4.7e-09 Score=90.41 Aligned_cols=116 Identities=14% Similarity=0.273 Sum_probs=86.4
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCCCCHHHHHHHHHHHHhCCcceee---EEEE---EEeeccCC
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDESEEIFKGAVREVKEETGVDTEFV---EVIA---FRHAHNVA 242 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~GEs~~eAAiREv~EETGi~~~~~---~~l~---~~~~~~~~ 242 (340)
+..++++|.+|++||.||...+..+++.|.=- .||--+||+..+||+|-+.+|.||+.... +++. +.......
T Consensus 35 AFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~ 114 (185)
T COG1443 35 AFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG 114 (185)
T ss_pred hhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCC
Confidence 46789999999999999988888999999854 68888999999999999999999998732 2221 22222223
Q ss_pred CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 243 FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
....-+.++...+..+ .+.++++|..+++|++.+++..+....
T Consensus 115 ~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~ 157 (185)
T COG1443 115 IVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDAT 157 (185)
T ss_pred cceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCC
Confidence 3333444444443332 566778999999999999998875443
No 90
>PLN02839 nudix hydrolase
Probab=98.70 E-value=3.8e-07 Score=88.03 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=100.8
Q ss_pred ChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEE--
Q 019517 95 DPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVG-- 172 (340)
Q Consensus 95 ~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~-- 172 (340)
++++-...|..-+..|+..+.=.-| ..++-++.. .| . .+-++.+ +. ...+.......||.
T Consensus 148 t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~--~~--~--~~~l~~i-----ER-aA~~lfGi~tyGVHlN 209 (372)
T PLN02839 148 KPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKP--SF--N--APVFFSL-----ER-AAAPYFGIKGYGVHMN 209 (372)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCc------ccCcccccc--CC--C--CcceEEE-----ee-ccccccCceeEEEEEE
Confidence 6788889999999999998761113 111111110 00 0 1111111 11 11121111222333
Q ss_pred EEEEe-CCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCccee---eEEEEEEeecc-CCCc-e
Q 019517 173 GFVIN-DNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEF---VEVIAFRHAHN-VAFQ-K 245 (340)
Q Consensus 173 ~lv~~-~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~---~~~l~~~~~~~-~~~~-~ 245 (340)
+++.. .+.++++.||...+..++|+|+ +.||++..||++.++++||..||.||.... ....+...... ...+ .
T Consensus 210 Gyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~ 289 (372)
T PLN02839 210 GYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFK 289 (372)
T ss_pred EEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccc
Confidence 33322 3467999999988889999999 568999999999999999999999997542 22233222211 1111 2
Q ss_pred EEEEEEEEEe-cCCCcccCCcCceeeEEEEeccccccC
Q 019517 246 SDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 246 ~~~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
..+.|++.+. +.+..+.+++.|++++.+++++|+.+.
T Consensus 290 ~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~ 327 (372)
T PLN02839 290 RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANV 327 (372)
T ss_pred cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHH
Confidence 3345555443 222334567899999999999999743
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.67 E-value=8.2e-08 Score=78.21 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=64.3
Q ss_pred EEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEE
Q 019517 173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFIC 252 (340)
Q Consensus 173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~ 252 (340)
+++++.+|++||.||. ..+...|.|+||.-.++. ++..+++.+.+.+..|+.+.....++...+..+.......+|.+
T Consensus 2 ~~i~~~~~~~Ll~kRp-~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRP-EKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETTSEEEEEE---SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEEECC-CCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 5678889999999997 678899999999988774 33455566666678888776666666665655655555566666
Q ss_pred EEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 253 MLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 253 ~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.+...... +..+.+|++++++.+++++.
T Consensus 80 ~~~~~~~~------~~~~~~W~~~~~l~~~~~p~ 107 (114)
T PF14815_consen 80 EVSADPPA------EPEEGQWVSLEELDQYPLPT 107 (114)
T ss_dssp EEE-SS----------TTEEEEEGGGGGGS---H
T ss_pred EecCCCCC------CCCCcEEEEHHHHhhCCCCH
Confidence 65432111 35688999999999988865
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.55 E-value=5.4e-07 Score=73.75 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=77.2
Q ss_pred eEEEEEEEe-CCc--eEEEEEeccCC---CCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCccee-eEEEEEEeeccC
Q 019517 169 VGVGGFVIN-DNN--EVLVVQEKYCN---PAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEF-VEVIAFRHAHNV 241 (340)
Q Consensus 169 v~V~~lv~~-~~~--~VLLvqr~~~~---~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~-~~~l~~~~~~~~ 241 (340)
..++++++. ..| .|||+.-- ++ ....|.|.+|.|....||++..||+||.-||+||.+.- ...++. ...
T Consensus 4 ~SAGvLlYR~~aG~v~VLLvHPG-GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~---~kQ 79 (161)
T COG4119 4 LSAGVLLYRARAGVVDVLLVHPG-GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS---LKQ 79 (161)
T ss_pred ccceeEEEEecCCCEEEEEecCC-CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh---hcc
Confidence 346777876 233 56676542 22 12468899999999999999999999999999998731 122221 111
Q ss_pred CCceEEEEE----------------EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517 242 AFQKSDLFF----------------ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 297 (340)
Q Consensus 242 ~~~~~~~~f----------------~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~ 297 (340)
.-++..+.| -....+.++..+. -.|...+.|+++.+.....+..+..++.++++.
T Consensus 80 ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL~a~ 150 (161)
T COG4119 80 SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRLMAH 150 (161)
T ss_pred CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHHHHH
Confidence 122222222 2222233333322 267889999999999877666664455555444
No 93
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.85 E-value=2.1e-05 Score=69.37 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=86.6
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEc---------ceeeec-CCCCHHHHHHHHHHHHhCCcceeeE-----EEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKL---------PTGFID-ESEEIFKGAVREVKEETGVDTEFVE-----VIA 234 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l---------PGG~ve-~GEs~~eAAiREv~EETGi~~~~~~-----~l~ 234 (340)
+..++++|.++++||.||...+-.+++.|.= |++..+ .+.....||+|-+.-|.||..+.+. +++
T Consensus 54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~lt 133 (225)
T KOG0142|consen 54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLT 133 (225)
T ss_pred eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccce
Confidence 4688999999999999998777777888862 222211 1335789999999999999876543 344
Q ss_pred EEe---eccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC---CchHHHHHHHHH
Q 019517 235 FRH---AHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICI 299 (340)
Q Consensus 235 ~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~---~~~~~~il~~~l 299 (340)
.++ ...+.+|..-+-|+..+.. +-.++++++|+.+++|++.+|+..+.-... ..+++.|.+..+
T Consensus 134 rihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l 203 (225)
T KOG0142|consen 134 RIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFL 203 (225)
T ss_pred eeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHHH
Confidence 332 2334555555555544432 456777889999999999999876532221 236666665543
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0001 Score=65.97 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=48.1
Q ss_pred ccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCC---ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHH
Q 019517 140 YHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDN---NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAV 216 (340)
Q Consensus 140 ~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~---~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAi 216 (340)
|.....-+-+.++|.++... +++.... -+++.+||. ..|.|.+|||.+|+||.+-.+.+
T Consensus 109 wGPNHaadPiVtRwkrd~~g-------------ai~~~sgk~ile~vavkr~-----d~~~WAiPGGmvdpGE~vs~tLk 170 (275)
T KOG4195|consen 109 WGPNHAADPIVTRWKRDEDG-------------AICRKSGKKILEFVAVKRP-----DNGEWAIPGGMVDPGEKVSATLK 170 (275)
T ss_pred cCCccccCcceeeeeecCCC-------------CeeecccceeeEEEEEecC-----CCCcccCCCCcCCchhhhhHHHH
Confidence 33334456677888875432 1121211 257788886 67899999999999999999999
Q ss_pred HHHHHHhC
Q 019517 217 REVKEETG 224 (340)
Q Consensus 217 REv~EETG 224 (340)
||+.||.=
T Consensus 171 Ref~eEa~ 178 (275)
T KOG4195|consen 171 REFGEEAM 178 (275)
T ss_pred HHHHHHHH
Confidence 99999963
No 95
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.47 E-value=0.001 Score=56.99 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=73.6
Q ss_pred EEEEEeCCceEEEEEeccCCCC--CCCceEc-ceeeecCCCC--HH-----HHHHHHHHHHhCCc---ceeeEEEEEEee
Q 019517 172 GGFVINDNNEVLVVQEKYCNPA--FAGLWKL-PTGFIDESEE--IF-----KGAVREVKEETGVD---TEFVEVIAFRHA 238 (340)
Q Consensus 172 ~~lv~~~~~~VLLvqr~~~~~~--~~g~W~l-PGG~ve~GEs--~~-----eAAiREv~EETGi~---~~~~~~l~~~~~ 238 (340)
.+++.+.+ +||+-+|-.+.+. -.+.+.+ -|||+..++- +. -.+.||+.||.++. ...+.++++...
T Consensus 65 Yvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd 143 (203)
T COG4112 65 YVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND 143 (203)
T ss_pred EEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence 45566554 9999998643321 2345555 4899987642 22 23779999999998 556688888877
Q ss_pred ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517 239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~ 281 (340)
.....++.++-.++..+....+....+.+..+.+|+.++++.+
T Consensus 144 d~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 144 DTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence 6666666665544444333344445567788999999999987
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.15 E-value=6.6e-05 Score=71.01 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=64.5
Q ss_pred EEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceE
Q 019517 170 GVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKS 246 (340)
Q Consensus 170 ~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~ 246 (340)
..+++++|.. .++||++.. ....|.+|-|.+..+|+-.+||+|||.||||.+.... ...++ .....+..
T Consensus 84 v~ga~ild~~~sr~llv~g~-----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~I---e~nI~dq~ 155 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGW-----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGI---ETNIRDQL 155 (348)
T ss_pred CchHhhhhhhhhhhheeece-----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCc---ccchhhce
Confidence 3577888754 578888875 3456999999999999999999999999999987532 11111 01111222
Q ss_pred EEEEEEE-Eec-CCCcccCCcCceeeEEEEecccc
Q 019517 247 DLFFICM-LKP-LSTEIKVDDLEIKGAKWMPFMEF 279 (340)
Q Consensus 247 ~~~f~~~-~~~-~~~~~~~~~~E~~~~~Wv~leel 279 (340)
...|+.. +.. ....+. --.|+..+.|..++++
T Consensus 156 ~~~fIi~gvs~d~~f~~~-v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 156 VRLFIINGVSEDTNFNPR-VRKEISKIHWHYLDHL 189 (348)
T ss_pred eeeeeeccceeeeecchh-hhccccceeeeehhhh
Confidence 2223321 111 111111 1367889999999998
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.85 E-value=0.0063 Score=59.33 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=59.4
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 249 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~ 249 (340)
...++++..++++||.||. ..+.+.|.|+||.. +. + ...++..|+.|+.......++...+..+++......
T Consensus 232 ~~~~~~~~~~~~~~l~~r~-~~gl~~gl~~fP~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~ 303 (350)
T PRK10880 232 TGYFLLLQHGDEVWLEQRP-PSGLWGGLFCFPQF--AD-E----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP 303 (350)
T ss_pred EEEEEEEEECCEEEEEECC-ccChhhccccCCCC--cc-h----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence 3444555566899999986 56788999999963 21 1 124566688887532222222222222222222223
Q ss_pred EEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHH
Q 019517 250 FICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 296 (340)
Q Consensus 250 f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~ 296 (340)
|.+.... ...... . .+..|++++++..++++.. ++++++
T Consensus 304 ~~~~~~~--~~~~~~-~--~~~~w~~~~~~~~~~~p~~---~~k~l~ 342 (350)
T PRK10880 304 MWLPVSS--FTGCMD-E--GNGLWYNLAQPPSVGLAAP---VERLLQ 342 (350)
T ss_pred EEEEccc--cccccC-C--cCCeEechHHhcccCCcHH---HHHHHH
Confidence 3333211 110011 1 2346999999999888654 445543
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.38 E-value=0.011 Score=55.51 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=62.3
Q ss_pred eEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceEEEEEEEEEecCC----CcccCCcCceeeE
Q 019517 198 WKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKSDLFFICMLKPLS----TEIKVDDLEIKGA 271 (340)
Q Consensus 198 W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~E~~~~ 271 (340)
.++.+|.|+..-+..+-|.||..||.|+++... +.+..+.+..+..+....+|+|..+... +.-..+++|..+.
T Consensus 286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv 365 (405)
T KOG4432|consen 286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV 365 (405)
T ss_pred eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence 456678888777889999999999999987543 4556666666777777777888764322 1222356788888
Q ss_pred EEEeccccccCC
Q 019517 272 KWMPFMEFVKQP 283 (340)
Q Consensus 272 ~Wv~leel~~~~ 283 (340)
.-+++++++.+.
T Consensus 366 v~lsle~a~~~~ 377 (405)
T KOG4432|consen 366 VRLSLEDAPSLY 377 (405)
T ss_pred EEechhhhhHHH
Confidence 899999987753
No 99
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.24 E-value=0.058 Score=50.74 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=56.9
Q ss_pred eEEEEEEEeCC-ceEEEEEeccCCCCC-------------------------CCceEcceeeecCCCCHHHHHHHHHHHH
Q 019517 169 VGVGGFVINDN-NEVLVVQEKYCNPAF-------------------------AGLWKLPTGFIDESEEIFKGAVREVKEE 222 (340)
Q Consensus 169 v~V~~lv~~~~-~~VLLvqr~~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAAiREv~EE 222 (340)
-+|.+++++.+ .++|++++. ++... .-..++.||.|+..-++.+-|..||.||
T Consensus 27 ~~v~ill~~r~~eq~l~vrqf-r~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~ee 105 (405)
T KOG4432|consen 27 SSVSILLFHRDLEQFLLVRQF-RPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEE 105 (405)
T ss_pred cceEEEEEccchhhhehhhhh-chhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHH
Confidence 45778888855 567788774 22111 1235688999999999999999999999
Q ss_pred hCCcceeeEEEEEEe--eccCCCceEEEEEEEEEe
Q 019517 223 TGVDTEFVEVIAFRH--AHNVAFQKSDLFFICMLK 255 (340)
Q Consensus 223 TGi~~~~~~~l~~~~--~~~~~~~~~~~~f~~~~~ 255 (340)
.|+++...+++..+. ......+.-.+.|+|...
T Consensus 106 cgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 106 CGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405)
T ss_pred hCCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence 999987665543322 222223334456666653
No 100
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.071 Score=48.92 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=43.5
Q ss_pred ceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcc
Q 019517 180 NEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDT 227 (340)
Q Consensus 180 ~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~ 227 (340)
-++.+.||+..+..|+|+|+ ..||++-.|-.+.++|+.|..||+.++.
T Consensus 148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 36889999888889999998 6789999999999999999999999987
No 101
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=94.68 E-value=0.18 Score=46.57 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcc--cCCCCCCcCcccc-hhhhhhhhhhhcCCC
Q 019517 292 KKVIDICIARLRKR--YCGLYPHQLVSAF-DGQTSSLYYNDSDTQ 333 (340)
Q Consensus 292 ~~il~~~l~~l~~~--y~g~~~~~l~~~f-~~~~~~ly~~~~~~~ 333 (340)
++|++.++++++.+ |.|+.|.++|..| .-+++..-+.+.++-
T Consensus 222 RRIlATa~aRLR~KIKYRPVVFELmp~~FTLlqLQrtVEAisGr~ 266 (322)
T COG4111 222 RRILATALARLRAKIKYRPVVFELMPPEFTLLQLQRTVEAISGRL 266 (322)
T ss_pred HHHHHHHHHHHHhcccccceEEEecCchhhHHHHHHHHHHHcCcc
Confidence 88999999999987 9999999999999 888887777776654
No 102
>PRK13910 DNA glycosylase MutY; Provisional
Probab=92.80 E-value=0.59 Score=44.52 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEeCCceEEEEEeccCCCCCCCceEcce
Q 019517 173 GFVINDNNEVLVVQEKYCNPAFAGLWKLPT 202 (340)
Q Consensus 173 ~lv~~~~~~VLLvqr~~~~~~~~g~W~lPG 202 (340)
++++ .++++||.||. .+.+.|.|+||+
T Consensus 191 ~~~~-~~~~~ll~kr~--~~l~~gl~~fP~ 217 (289)
T PRK13910 191 GVVI-QNNQIALEKIE--QKLYLGMHHFPN 217 (289)
T ss_pred EEEE-ECCEEEEEECC--CchhcccccCCC
Confidence 3444 35789998874 468999999996
No 103
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=92.77 E-value=0.42 Score=42.47 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=33.6
Q ss_pred EEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCc
Q 019517 172 GGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD 226 (340)
Q Consensus 172 ~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~ 226 (340)
+++++... -.|||.|.. ...|.+|||.+.+||+..++..|.+.+-.|..
T Consensus 48 ~Vllvh~h~~PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 48 GVLLVHEHGHPHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEETTEEEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred EEEEEecCCCcEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 34444433 369999864 33799999999999999999999999999986
No 104
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=91.42 E-value=0.42 Score=41.53 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=38.2
Q ss_pred EEEEEeCC--ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCC
Q 019517 172 GGFVINDN--NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGV 225 (340)
Q Consensus 172 ~~lv~~~~--~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi 225 (340)
+++++.+. -.|||.|-. .-.+++|||..++||+-.+...|-+-|-.|-
T Consensus 74 gvlivheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 74 GVLIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred eeEEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 34444433 578888753 4579999999999999999999999999993
No 105
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=90.06 E-value=0.79 Score=44.43 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517 162 PGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241 (340)
Q Consensus 162 p~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~ 241 (340)
|.....+..++.++.+.+|+++|.+|. ..+...|.|++|....+. .. .+...+.|+.. +.++.+.+..+
T Consensus 229 ~k~~~~~~~~~~~~~~~~~~~~l~kr~-~~gl~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~ft 297 (342)
T COG1194 229 PKKKLPRRFAAFLILNRDGEVLLEKRP-EKGLLGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFT 297 (342)
T ss_pred cccccchheeeEEEEccCcchhhhhCc-ccCceecccccccccccc--hh-----hhHhhhccccc---ccccceeeeee
Confidence 343334556777788888999999986 567889999999875544 22 22223344433 22322222222
Q ss_pred CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
.+..... +.... .. .+. +..|++++++....++.
T Consensus 298 h~~l~i~-~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~ 331 (342)
T COG1194 298 HFRLTIE-LRASA--SL-------VLS-DGRWYNLSDLESIGLPA 331 (342)
T ss_pred EEEEEEE-EEeec--cc-------CCC-CceeccccccccccccH
Confidence 2221111 11111 11 222 78999999999877754
No 106
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=85.42 E-value=2.1 Score=39.58 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=58.7
Q ss_pred ceEEEEEeccCCCCCCCceEcceeee-cCCCCHHHHHHHHHHHHhCCcceee----EEEEEE--eecc---CCC--ceEE
Q 019517 180 NEVLVVQEKYCNPAFAGLWKLPTGFI-DESEEIFKGAVREVKEETGVDTEFV----EVIAFR--HAHN---VAF--QKSD 247 (340)
Q Consensus 180 ~~VLLvqr~~~~~~~~g~W~lPGG~v-e~GEs~~eAAiREv~EETGi~~~~~----~~l~~~--~~~~---~~~--~~~~ 247 (340)
.-+||++++.+ ..+.|.||-+.. ++++++..+|.|++++-.|=....+ ..++.. .... ... +...
T Consensus 139 ~LyLLV~~k~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ 215 (263)
T KOG4548|consen 139 KLYLLVKRKFG---KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKV 215 (263)
T ss_pred eEEEEEeeccC---ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCccccccccccccee
Confidence 34888886533 456899999999 9999999999999999988654332 122211 1100 111 1112
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCC
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP 283 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~ 283 (340)
.+|-+.+.. +.. .+..-..+..|++-+|+.+..
T Consensus 216 ff~k~~lv~--~~~-~kn~n~edfvWvTkdel~e~l 248 (263)
T KOG4548|consen 216 FFFKASLVA--NSN-QKNQNKEDFVWVTKDELGEKL 248 (263)
T ss_pred EEeeeeecc--ccc-hhcccccceEEechHHHhhhc
Confidence 333333322 211 122334469999999998753
No 107
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=80.66 E-value=4.2 Score=38.44 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=24.0
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEccee
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTG 203 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG 203 (340)
..+++.+.++++|+.+|. ..+...|.|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~-~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRP-EKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCC-CCchhhccccCCCC
Confidence 334444567899999986 45678999999973
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=51.50 E-value=14 Score=24.28 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=12.1
Q ss_pred cceeeecCCCCHHHHHHHHHHHHh
Q 019517 200 LPTGFIDESEEIFKGAVREVKEET 223 (340)
Q Consensus 200 lPGG~ve~GEs~~eAAiREv~EET 223 (340)
.-||...||--+...+.||+-||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 457888888889999999999996
No 109
>PF14443 DBC1: DBC1
Probab=49.05 E-value=69 Score=26.66 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCceEcc--eeeecCC-CCHHHHHHHHHHHHhCCccee
Q 019517 195 AGLWKLP--TGFIDES-EEIFKGAVREVKEETGVDTEF 229 (340)
Q Consensus 195 ~g~W~lP--GG~ve~G-Es~~eAAiREv~EETGi~~~~ 229 (340)
+|.|.-- ||-.+.+ ..+..+|+|=++|-|||+...
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4455533 4443332 347899999999999999753
No 110
>PF12860 PAS_7: PAS fold
Probab=48.10 E-value=8.6 Score=30.40 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=33.6
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHH
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAV 216 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAi 216 (340)
.|++++|.++++++..++ ....|.+|...+.+|-++.+.+.
T Consensus 6 ~Gv~v~D~~~rl~~~N~~-----~~~l~~~~~~~~~~G~~~~~l~~ 46 (115)
T PF12860_consen 6 QGVAVFDSDGRLVFWNQR-----FRELFGLPPEMLRPGASFRDLLR 46 (115)
T ss_pred ceEEEEcCCCeEEeEcHH-----HHHHhCCCHHHhcCCCCHHHHHH
Confidence 688999999999999987 45689999998888887655444
No 111
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=40.49 E-value=13 Score=33.03 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred ccccccccccCCCCCCCCCC---cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeee---cCCCCHHHHHH
Q 019517 146 EYLMLTYWIPDGPCVLPGNA---THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFI---DESEEIFKGAV 216 (340)
Q Consensus 146 ~y~~l~~w~~~~~~~lp~~~---~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~v---e~GEs~~eAAi 216 (340)
+.+|+..|+.+.|..++..- ...+|...+|+-.+|++.+..|. +.....-.-.||||.- ..|+++.|++.
T Consensus 4 ~~lml~Ewm~~~p~~l~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~-g~~~~~f~s~lP~g~~~~~~~g~tILDci~ 79 (186)
T cd09232 4 NQLMLSEWMVEVPDDLSEEWLVVPCPVGKRCLVVASKGKTVARSKN-GRTLHRFSSALPGGSRKTSNSGYTILDCIY 79 (186)
T ss_pred cceechhhcccCCCccCcceEEEECcCceEEEEEEeCCEEEEEeCC-CCEEEecccCCCCCCcCCCCCCCEEEEEec
Confidence 34567777777666544332 12356666666667888888764 3222333456899874 35666666543
No 112
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=26.15 E-value=17 Score=35.17 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=49.3
Q ss_pred ccccccCC---CCCCCCCCcceeEEEEEEEe--CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhC
Q 019517 150 LTYWIPDG---PCVLPGNATHQVGVGGFVIN--DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG 224 (340)
Q Consensus 150 l~~w~~~~---~~~lp~~~~~~v~V~~lv~~--~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG 224 (340)
+.+|+-.. -++.|.........+.++.+ .+.-+.++-+. .-+..|.||-|.+..||-+.++++|+-.||+|
T Consensus 217 lkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~----~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~ 292 (348)
T KOG2937|consen 217 LKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYF----AKPENWTFPKGKISRGEKPRDASIRSTFEEPG 292 (348)
T ss_pred HHHHHHhccchhhcCcccCccchhHHhhhhccccccceeecccc----cccccccCcccccccCCccccchhhhcCCCcC
Confidence 44565532 24455544444444455555 23333333332 24567999999999999999999999999999
Q ss_pred Cccee
Q 019517 225 VDTEF 229 (340)
Q Consensus 225 i~~~~ 229 (340)
.+...
T Consensus 293 f~~~s 297 (348)
T KOG2937|consen 293 FPFGS 297 (348)
T ss_pred Ccccc
Confidence 87643
Done!