Query 019517
Match_columns 340
No_of_seqs 400 out of 2562
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fb1_A Conserved hypothetical 99.9 7.9E-24 2.7E-28 192.3 15.1 165 161-334 6-178 (226)
2 3gz5_A MUTT/nudix family prote 99.9 2E-23 6.8E-28 191.4 13.7 165 163-334 17-191 (240)
3 3fxt_A Nucleoside diphosphate- 99.9 1.2E-24 4.1E-29 174.7 4.2 95 65-159 15-113 (113)
4 2fml_A MUTT/nudix family prote 99.9 1.1E-20 3.9E-25 176.2 20.0 164 160-331 31-229 (273)
5 3h95_A Nucleoside diphosphate- 99.9 3.4E-21 1.1E-25 171.0 13.2 142 159-305 17-161 (199)
6 3i7u_A AP4A hydrolase; nudix p 99.8 7E-21 2.4E-25 158.9 13.0 123 168-303 4-130 (134)
7 3grn_A MUTT related protein; s 99.8 2.9E-20 1E-24 157.3 16.7 131 167-303 7-138 (153)
8 3gg6_A Nudix motif 18, nucleos 99.8 1.1E-19 3.7E-24 154.1 17.3 134 167-308 19-153 (156)
9 3oga_A Nucleoside triphosphata 99.8 1.2E-19 4.1E-24 155.4 15.5 127 167-297 26-161 (165)
10 3gwy_A Putative CTP pyrophosph 99.8 1.6E-19 5.3E-24 150.6 15.6 123 169-300 7-131 (140)
11 2w4e_A MUTT/nudix family prote 99.8 2E-20 6.9E-25 157.5 9.8 115 168-284 5-119 (145)
12 4dyw_A MUTT/nudix family prote 99.8 9.2E-20 3.1E-24 155.5 13.8 121 157-281 18-140 (157)
13 1vcd_A NDX1; nudix protein, di 99.8 1.2E-19 4.3E-24 147.8 13.8 121 169-301 3-123 (126)
14 3hhj_A Mutator MUTT protein; n 99.8 1.1E-19 3.9E-24 154.5 14.0 135 158-300 19-155 (158)
15 3q1p_A Phosphohydrolase (MUTT/ 99.8 2.3E-19 8E-24 160.1 16.4 130 164-305 64-198 (205)
16 3u53_A BIS(5'-nucleosyl)-tetra 99.8 1E-19 3.5E-24 154.7 13.4 127 170-304 5-144 (155)
17 2rrk_A ORF135, CTP pyrophospho 99.8 3.2E-19 1.1E-23 147.9 15.7 125 171-303 11-135 (140)
18 3r03_A Nudix hydrolase; struct 99.8 2.4E-19 8.2E-24 149.5 14.2 126 169-302 9-136 (144)
19 3eds_A MUTT/nudix family prote 99.8 2.8E-20 9.6E-25 157.9 8.5 114 166-287 19-140 (153)
20 2pbt_A AP4A hydrolase; nudix p 99.8 1.7E-19 5.7E-24 148.5 12.6 123 169-304 5-131 (134)
21 3exq_A Nudix family hydrolase; 99.8 2.3E-19 7.9E-24 153.6 13.9 128 166-300 8-136 (161)
22 3ees_A Probable pyrophosphohyd 99.8 2.7E-19 9.1E-24 150.4 13.8 128 168-303 21-148 (153)
23 1ktg_A Diadenosine tetraphosph 99.8 3.3E-19 1.1E-23 147.6 14.0 126 169-303 4-136 (138)
24 3i9x_A MUTT/nudix family prote 99.8 9.4E-20 3.2E-24 159.9 11.2 134 169-305 28-175 (187)
25 1sjy_A MUTT/nudix family prote 99.8 6.5E-19 2.2E-23 149.3 16.1 119 166-286 11-134 (159)
26 2fkb_A Putative nudix hydrolas 99.8 3.9E-19 1.3E-23 154.4 14.9 127 169-301 38-167 (180)
27 2yyh_A MUTT domain, 8-OXO-DGTP 99.8 1.1E-18 3.9E-23 145.0 17.0 124 164-300 5-136 (139)
28 3f6a_A Hydrolase, nudix family 99.8 6.3E-19 2.2E-23 150.1 15.4 122 168-299 6-148 (159)
29 3id9_A MUTT/nudix family prote 99.8 6.7E-19 2.3E-23 151.6 15.4 123 167-299 22-149 (171)
30 1vhz_A ADP compounds hydrolase 99.8 2.1E-19 7.1E-24 159.8 12.4 115 169-286 50-164 (198)
31 3son_A Hypothetical nudix hydr 99.8 3.5E-19 1.2E-23 149.9 12.8 128 169-305 6-144 (149)
32 1rya_A GDP-mannose mannosyl hy 99.8 7.8E-19 2.7E-23 148.9 14.5 117 167-287 17-143 (160)
33 1mk1_A ADPR pyrophosphatase; n 99.8 7.8E-20 2.7E-24 163.4 8.5 153 108-286 4-162 (207)
34 2yvp_A NDX2, MUTT/nudix family 99.8 7.1E-20 2.4E-24 159.6 7.8 117 169-286 42-158 (182)
35 1vk6_A NADH pyrophosphatase; 1 99.8 2.1E-18 7.1E-23 160.5 17.9 138 159-306 131-268 (269)
36 2kdv_A RNA pyrophosphohydrolas 99.8 1.8E-18 6.3E-23 148.8 16.1 127 167-298 7-151 (164)
37 1v8y_A ADP-ribose pyrophosphat 99.8 7E-19 2.4E-23 151.8 13.3 114 169-286 35-148 (170)
38 2b0v_A Nudix hydrolase; struct 99.8 1.8E-18 6E-23 145.7 14.2 111 168-282 8-120 (153)
39 3o8s_A Nudix hydrolase, ADP-ri 99.8 1.8E-18 6.1E-23 154.5 14.9 129 164-305 66-199 (206)
40 3shd_A Phosphatase NUDJ; nudix 99.8 3.7E-18 1.3E-22 144.0 16.0 126 168-299 5-131 (153)
41 1f3y_A Diadenosine 5',5'''-P1, 99.8 6.4E-19 2.2E-23 149.9 11.2 129 167-303 13-162 (165)
42 3cng_A Nudix hydrolase; struct 99.8 7.8E-18 2.7E-22 148.1 18.3 130 165-304 37-166 (189)
43 1nqz_A COA pyrophosphatase (MU 99.8 8E-19 2.7E-23 154.6 11.5 130 153-283 19-152 (194)
44 3q93_A 7,8-dihydro-8-oxoguanin 99.8 5.9E-18 2E-22 147.3 16.1 123 167-299 24-148 (176)
45 3fcm_A Hydrolase, nudix family 99.8 5.3E-18 1.8E-22 150.0 15.7 133 167-308 44-190 (197)
46 2o1c_A DATP pyrophosphohydrola 99.8 1.6E-18 5.6E-23 144.8 11.5 122 169-300 10-147 (150)
47 1k2e_A Nudix homolog; nudix/MU 99.8 2.8E-18 9.7E-23 145.9 11.7 118 169-304 2-138 (156)
48 1q27_A Putative nudix hydrolas 99.8 3.1E-18 1.1E-22 147.4 11.7 112 168-282 34-148 (171)
49 2fvv_A Diphosphoinositol polyp 99.8 1.1E-18 3.8E-23 154.6 9.2 145 168-324 40-188 (194)
50 2pqv_A MUTT/nudix family prote 99.8 7.4E-18 2.5E-22 142.4 13.8 118 169-296 20-141 (154)
51 1g0s_A Hypothetical 23.7 kDa p 99.8 3.6E-18 1.2E-22 153.0 12.4 117 169-286 58-183 (209)
52 2azw_A MUTT/nudix family prote 99.8 3.7E-18 1.3E-22 142.7 11.5 122 166-299 16-144 (148)
53 2dsc_A ADP-sugar pyrophosphata 99.8 1.2E-18 4.1E-23 156.2 8.2 159 109-284 16-185 (212)
54 1mut_A MUTT, nucleoside tripho 99.8 8.6E-19 3E-23 143.0 6.5 118 172-297 8-125 (129)
55 2jvb_A Protein PSU1, mRNA-deca 99.7 2E-18 6.8E-23 144.6 8.3 111 171-287 7-119 (146)
56 2b06_A MUTT/nudix family prote 99.7 1.4E-17 4.8E-22 140.7 13.4 122 167-299 7-133 (155)
57 1hzt_A Isopentenyl diphosphate 99.7 3E-18 1E-22 150.5 9.2 133 169-304 33-175 (190)
58 2a6t_A SPAC19A8.12; alpha/beta 99.7 1.4E-18 5E-23 161.8 7.2 194 73-286 12-216 (271)
59 3fk9_A Mutator MUTT protein; s 99.7 1.6E-17 5.5E-22 146.2 13.1 122 170-301 6-130 (188)
60 3o6z_A GDP-mannose pyrophospha 99.7 6.7E-18 2.3E-22 149.0 10.6 113 169-284 46-168 (191)
61 3f13_A Putative nudix hydrolas 99.7 3.4E-17 1.2E-21 141.1 14.3 115 169-301 16-130 (163)
62 3q91_A Uridine diphosphate glu 99.7 1.1E-17 3.6E-22 151.2 9.3 116 168-284 36-190 (218)
63 1x51_A A/G-specific adenine DN 99.7 5.6E-17 1.9E-21 137.4 10.6 126 167-300 18-148 (155)
64 2qjo_A Bifunctional NMN adenyl 99.7 3.2E-16 1.1E-20 149.2 14.6 132 164-301 199-340 (341)
65 2qjt_B Nicotinamide-nucleotide 99.7 7E-16 2.4E-20 147.7 16.6 135 163-303 203-349 (352)
66 3e57_A Uncharacterized protein 99.7 1.3E-16 4.5E-21 143.0 8.4 108 171-282 70-188 (211)
67 3fjy_A Probable MUTT1 protein; 99.6 9.7E-16 3.3E-20 148.1 13.5 119 178-304 36-177 (364)
68 3fsp_A A/G-specific adenine gl 99.6 3.2E-15 1.1E-19 145.0 12.2 123 168-302 240-362 (369)
69 2dho_A Isopentenyl-diphosphate 99.6 1.1E-14 3.8E-19 132.7 14.9 130 169-301 60-215 (235)
70 2pny_A Isopentenyl-diphosphate 99.6 1.1E-14 3.8E-19 133.7 14.4 131 169-302 71-227 (246)
71 1u20_A U8 snoRNA-binding prote 99.5 6.8E-15 2.3E-19 131.9 7.2 103 171-282 47-165 (212)
72 1q33_A Pyrophosphatase, ADP-ri 99.5 3.6E-13 1.2E-17 126.5 17.2 117 181-307 140-282 (292)
73 3dup_A MUTT/nudix family prote 99.5 4.4E-13 1.5E-17 126.1 17.1 180 83-282 53-242 (300)
74 2xsq_A U8 snoRNA-decapping enz 99.4 5.3E-13 1.8E-17 120.2 6.4 92 181-280 66-171 (217)
75 3qsj_A Nudix hydrolase; struct 99.4 4.7E-12 1.6E-16 115.1 12.1 112 168-280 8-186 (232)
76 3rh7_A Hypothetical oxidoreduc 99.2 2.9E-11 9.9E-16 114.9 11.1 115 167-305 182-297 (321)
77 3kvh_A Protein syndesmos; NUDT 98.9 1.7E-09 5.7E-14 94.5 6.1 84 194-280 52-147 (214)
78 3bho_A Cleavage and polyadenyl 98.8 1.4E-08 4.6E-13 89.6 9.1 62 169-236 59-129 (208)
No 1
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.91 E-value=7.9e-24 Score=192.29 Aligned_cols=165 Identities=17% Similarity=0.257 Sum_probs=130.3
Q ss_pred CCCCCcceeEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517 161 LPGNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH 237 (340)
Q Consensus 161 lp~~~~~~v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~ 237 (340)
.+.++.+.++|+++|+ +++++|||++|.. .+..|.|.+|||++++||++.+||+||++||||+.+..++.++.+.
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~--~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~ 83 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNF--EPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG 83 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSS--SSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcC--CCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence 4556667788998888 4568999999964 2457899999999999999999999999999999999888887665
Q ss_pred ecc-CCCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCc
Q 019517 238 AHN-VAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ 313 (340)
Q Consensus 238 ~~~-~~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~ 313 (340)
... ...+ ...++|++... ......+++|+.+++|++++++.++.+. + +.+++.++++++.+ |.++.+..
T Consensus 84 ~~~r~~~~~~v~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~l~~d---h--~~il~~a~~rlr~~~~y~~i~~~l 156 (226)
T 2fb1_A 84 AIDRDPGERVVSIAYYALIN--INEYDRELVQKHNAYWVNINELPALIFD---H--PEMVDKAREMMKQKASVEPIGFNL 156 (226)
T ss_dssp CTTSSSSSCEEEEEEEEECC--TTSSCHHHHHHTTEEEEETTSCCCBSTT---H--HHHHHHHHHHHHHHHHHSGGGGGG
T ss_pred CCCcCCCceEEEEEEEEEec--CcccccCCccccceEEEEHHHhhhccCC---H--HHHHHHHHHHHHhhcccCchHHHh
Confidence 332 2222 33445666643 2222234578889999999999987653 3 68899999988876 89999999
Q ss_pred Ccccc-hhhhhhhhhhhcCCCC
Q 019517 314 LVSAF-DGQTSSLYYNDSDTQD 334 (340)
Q Consensus 314 l~~~f-~~~~~~ly~~~~~~~~ 334 (340)
+|.+| ..+++.+|+.+++.+.
T Consensus 157 lp~~ftl~~l~~~ye~~~~~~~ 178 (226)
T 2fb1_A 157 LPKLFTLSQLQSLYEAIYGEPM 178 (226)
T ss_dssp SCSEEEHHHHHHHHHHHHTSCC
T ss_pred CCccccHHHHHHHHHHHhCCCC
Confidence 99999 9999999999998765
No 2
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.90 E-value=2e-23 Score=191.35 Aligned_cols=165 Identities=21% Similarity=0.344 Sum_probs=127.9
Q ss_pred CCCcceeEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecC--CCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517 163 GNATHQVGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDE--SEEIFKGAVREVKEETGVDTEFVEVIAFRH 237 (340)
Q Consensus 163 ~~~~~~v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~--GEs~~eAAiREv~EETGi~~~~~~~l~~~~ 237 (340)
.+..+.++|+++|+ +++++|||++|.. .+..|.|.+|||++++ ||++.+||+||++||||+++..+++++.+.
T Consensus 17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~--~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~ 94 (240)
T 3gz5_A 17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSN--HPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVG 94 (240)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEECCS--SSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEE
T ss_pred ccCCCccEEEEEEEEEeCCCcEEEEEECcC--CCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeC
Confidence 34455678888887 3457999999863 3467899999999999 999999999999999999998888887655
Q ss_pred eccC-CCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCc
Q 019517 238 AHNV-AFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQ 313 (340)
Q Consensus 238 ~~~~-~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~ 313 (340)
.... ..+ ...++|++... ........+|+.+++|++++++...++.++ + +.+++.++++++.+ |.++.+..
T Consensus 95 ~~~r~~~~~~~~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~~~l~~d-h--~~il~~a~~rlr~kl~y~~i~~~l 169 (240)
T 3gz5_A 95 NNSRDARGWSVTVCYTALMS--YQACQIQIASVSDVKWWPLADVLQMPLAFD-H--LQLIEQARERLTQKALYSLVPGFA 169 (240)
T ss_dssp ESSSSTTSCEEEEEEEEECC--HHHHHHHHTTCTTEEEEEHHHHTTSCCSTT-H--HHHHHHHHHHHHHHHHHCSGGGGG
T ss_pred CCccCCCceEEEEEEEEEec--ccccCCCCCcccceEEecHHHcccCCcchh-H--HHHHHHHHHHHHHhcccCcHHHHh
Confidence 4322 222 34455665542 222333457888999999999987666663 4 89999999999886 99999999
Q ss_pred Ccccc-hhhhhhhhhhhcCCCC
Q 019517 314 LVSAF-DGQTSSLYYNDSDTQD 334 (340)
Q Consensus 314 l~~~f-~~~~~~ly~~~~~~~~ 334 (340)
+|.+| ..+++.+|+.++|++.
T Consensus 170 lp~~Ftl~~l~~~ye~i~g~~~ 191 (240)
T 3gz5_A 170 LSEPFTLPELQHVHEVLLGKPI 191 (240)
T ss_dssp SCSSBCHHHHHHHHHHHHTSCC
T ss_pred CCCCccHHHHHHHHHHHcCCcC
Confidence 99999 9999999999999764
No 3
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=174.67 Aligned_cols=95 Identities=27% Similarity=0.503 Sum_probs=82.2
Q ss_pred eeeeecccceeecccCCCCcEEEcCCC----CCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccc
Q 019517 65 SSIFSRNLRVLDFFDDEYDGVVVDPKR----LPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKY 140 (340)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~~g~~v~~~~----~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~ 140 (340)
-+...+++.+|+|..|+||||+|++++ .+.|+++|...|+.+|+.||.+++++||++||+.+++++++|++.||.|
T Consensus 15 ~~~~~~~~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~f 94 (113)
T 3fxt_A 15 TENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCF 94 (113)
T ss_dssp ------CCCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEE
T ss_pred ccccccccccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCcee
Confidence 456677889999999999999999754 2559999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccccCCCC
Q 019517 141 HHAEPEYLMLTYWIPDGPC 159 (340)
Q Consensus 141 h~~~~~y~~l~~w~~~~~~ 159 (340)
|||+++|+||++|+|+.|+
T Consensus 95 HHAe~dylmL~~WLpe~ps 113 (113)
T 3fxt_A 95 HHAESDSSTLTLWLREGPS 113 (113)
T ss_dssp EEEEBTEEEEEEECCC---
T ss_pred ecCCCCeEEEEEecCcCCC
Confidence 9999999999999998763
No 4
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.86 E-value=1.1e-20 Score=176.18 Aligned_cols=164 Identities=19% Similarity=0.251 Sum_probs=123.2
Q ss_pred CCCCCCcceeEEEEEEEe--C---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEE
Q 019517 160 VLPGNATHQVGVGGFVIN--D---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEV 232 (340)
Q Consensus 160 ~lp~~~~~~v~V~~lv~~--~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~ 232 (340)
.++.+..+.++|+++|+. + +++|||++|... +..|.|.+|||++++||++.+||+||++||||+.+. .+..
T Consensus 31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~--p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~ 108 (273)
T 2fml_A 31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH--PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ 108 (273)
T ss_dssp CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS--SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCC--CCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE
Confidence 345566777888888875 2 358999999643 357899999999999999999999999999997654 4555
Q ss_pred EEEEeecc-CCC-ceEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc-----------------------CCCCCC
Q 019517 233 IAFRHAHN-VAF-QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK-----------------------QPLIQG 287 (340)
Q Consensus 233 l~~~~~~~-~~~-~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~-----------------------~~~~~~ 287 (340)
++.+.... ... ....++|++.... .. ...++|..+++|++++++.+ .++.+
T Consensus 109 l~~~~~~~r~~~~~~~~~~y~a~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Laf- 184 (273)
T 2fml_A 109 LHSFSRPDRDPRGWVVTVSYLAFIGE--EP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAF- 184 (273)
T ss_dssp EEEECCTTSSTTSSEEEEEEEEECCC--CC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCST-
T ss_pred EEEEcCCCCCCCceEEEEEEEEEeCC--CC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCcccc-
Confidence 55443222 111 2345666666532 22 34567899999999997432 23444
Q ss_pred CchHHHHHHHHHHHHhcc--cCCCCCCcCcccc-hhhhhhhhhhhcC
Q 019517 288 DCMFKKVIDICIARLRKR--YCGLYPHQLVSAF-DGQTSSLYYNDSD 331 (340)
Q Consensus 288 ~~~~~~il~~~l~~l~~~--y~g~~~~~l~~~f-~~~~~~ly~~~~~ 331 (340)
+| +.|+..++++++.+ |.++.+..||.+| ..+++.+|+.++|
T Consensus 185 dH--~~Il~~al~rlr~kl~y~~i~~~llp~~FTl~~l~~~ye~i~g 229 (273)
T 2fml_A 185 DH--SEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFAKFLG 229 (273)
T ss_dssp TH--HHHHHHHHHHHHHHTTTCCGGGGGGCSCBCHHHHHHHHHHHHT
T ss_pred cH--HHHHHHHHHHHHHHhcCCcHHHHhCCccccHHHHHHHHHHHhC
Confidence 44 78999999999886 9999999999999 9999999999998
No 5
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=171.03 Aligned_cols=142 Identities=35% Similarity=0.586 Sum_probs=99.9
Q ss_pred CCCCCCCcceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe
Q 019517 159 CVLPGNATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH 237 (340)
Q Consensus 159 ~~lp~~~~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~ 237 (340)
+..+.++.+.++|++++++. +++|||++++. ...|.|.+|||++++||++.+||+||++||||+.+....++++..
T Consensus 17 ~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~---~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~ 93 (199)
T 3h95_A 17 NLYFQSMSHQVGVAGAVFDESTRKILVVQDRN---KLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQ 93 (199)
T ss_dssp ---------CCEEEEEEEETTTTEEEEEEESS---SSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred ccccccCcccceEEEEEEeCCCCEEEEEEEcC---CCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEe
Confidence 34556677889998888885 58999999863 247899999999999999999999999999999998777777543
Q ss_pred ecc--CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 238 AHN--VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 238 ~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
... .......++|++..........++++|+.+++|++++++.++..... +.+.++..++...+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~~~~~~~~~~~~~ 161 (199)
T 3h95_A 94 QHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTP--ITSRVARLLLYGYREG 161 (199)
T ss_dssp CC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCH--HHHHHHHHHHHHHHHC
T ss_pred eecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcCh--HHHHHHHHHHhhhhcC
Confidence 222 22334557778877655556667789999999999999998865433 5566666665544444
No 6
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.85 E-value=7e-21 Score=158.87 Aligned_cols=123 Identities=28% Similarity=0.407 Sum_probs=90.3
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc---
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--- 244 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~--- 244 (340)
.++++++|++ +++|||++|. .|.|.+|||++|+||++.+||+||++||||+.+....+++.........+
T Consensus 4 ~~aag~vv~~-~~~vLL~~r~------~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 76 (134)
T 3i7u_A 4 EFSAGGVLFK-DGEVLLIKTP------SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERI 76 (134)
T ss_dssp EEEEEEEEEE-TTEEEEEECT------TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEE-CCEEEEEEeC------CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceE
Confidence 3678888886 4799999874 46899999999999999999999999999999988887765433222222
Q ss_pred -eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517 245 -KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 245 -~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~ 303 (340)
...++|+|... ++++.+ ++|+.+++|++++|+.++...+ -.+.+++.++..+.
T Consensus 77 ~~~~~~f~~~~~--~~~~~~-~~E~~~~~W~~~~e~~~~l~~~---~~r~il~~a~~l~~ 130 (134)
T 3i7u_A 77 FKTVKYYLMKYK--EGEPRP-SWEVKDAKFFPIKEAKKLLKYK---GDKEIFEKALKLKE 130 (134)
T ss_dssp EEEEEEEEEEEE--EECCCC-CTTSSEEEEEEHHHHHHHBCSH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEc--CCcCcC-ChhheEEEEEEHHHHhhhcCCh---HHHHHHHHHHHHHH
Confidence 23345666543 344444 3789999999999998875433 23778887775543
No 7
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=2.9e-20 Score=157.32 Aligned_cols=131 Identities=19% Similarity=0.288 Sum_probs=100.4
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
..++|++++++.+++|||++|....+..+|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus 7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T 3grn_A 7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI 86 (153)
T ss_dssp EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence 45778889998889999999975446678999999999999999999999999999999998887777665444443344
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCC-CCCCCchHHHHHHHHHHHHh
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQP-LIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~-~~~~~~~~~~il~~~l~~l~ 303 (340)
..+|.+.. ..+.+.. .+|+.+++|++++++.+++ ++. ..+.+++.+.+...
T Consensus 87 ~~~~~~~~--~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~~ 138 (153)
T 3grn_A 87 AIVFDGGY--VVADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDRENK 138 (153)
T ss_dssp EEEEEEEE--CCCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHHT
T ss_pred EEEEEEEe--cCCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhcccc
Confidence 45555544 2344433 4788999999999999988 543 45777777665443
No 8
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=154.11 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=100.1
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
....|++++++.+++|||++|... .+.|.|.+|||++++||++.+||+||++||||+++....+++..... ....
T Consensus 19 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~~ 93 (156)
T 3gg6_A 19 VCYVVLAVFLSEQDEVLLIQEAKR--ECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSWV 93 (156)
T ss_dssp CEEEEEEECBCTTSEEEEEECCCT--TSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTEE
T ss_pred eEEEEEEEEEeCCCEEEEEEecCC--CCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCEE
Confidence 345577788888899999999732 26899999999999999999999999999999999988888766532 2345
Q ss_pred EEEEEEEEecCCCc-ccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccCC
Q 019517 247 DLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG 308 (340)
Q Consensus 247 ~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~g 308 (340)
.++|++........ ...+++|+.+++|++++++.++.... -++.++..+...++++..+
T Consensus 94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~~~p 153 (156)
T 3gg6_A 94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAH---DILHLVELAAQYRQQARHP 153 (156)
T ss_dssp EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCT---HHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccch---hHHHHHHHHHHHhhcCCCc
Confidence 56677765322211 12355789999999999999865533 3567777777777665433
No 9
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.83 E-value=1.2e-19 Score=155.40 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=84.2
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe-----eccC
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH-----AHNV 241 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~-----~~~~ 241 (340)
....+.+++++.+++|||++|....+..+|.|.+|||++++||++.+||+||++||||+.+....++.... .+..
T Consensus 26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 105 (165)
T 3oga_A 26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTY 105 (165)
T ss_dssp EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC
T ss_pred ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEec
Confidence 33455566666779999999976555678999999999999999999999999999999988776654321 1111
Q ss_pred CCc----eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517 242 AFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 297 (340)
Q Consensus 242 ~~~----~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~ 297 (340)
... ...+++++.+....+.+.. ++|+.+++|++++++.++++.+. .+.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~ 161 (165)
T 3oga_A 106 ADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVA---TRHTLAL 161 (165)
T ss_dssp --CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHH---HHHHHHH
T ss_pred CCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHH---HHHHHHH
Confidence 111 1222333333333444433 47899999999999999987654 3455543
No 10
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.82 E-value=1.6e-19 Score=150.59 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=90.5
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCC--CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPA--FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~--~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
..|++++.+ +++|||++|.. .+. .+|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus 7 ~~v~~vi~~-~~~vLL~~r~~-~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3gwy_A 7 EVVAAVIRL-GEKYLCVQRGQ-TKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT 84 (140)
T ss_dssp EEEEEEEEE-TTEEEEEEC----------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred EEEEEEEEe-CCEEEEEEecC-CCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence 445666666 78999999973 333 68999999999999999999999999999999999888887765544444455
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
..+|.+... .+. ++..|+.+++|++++++.++++.+. .+.+++.+.+
T Consensus 85 ~~~f~~~~~--~~~--~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~ 131 (140)
T 3gwy_A 85 MHAFLCHPV--GQR--YVLKEHIAAQWLSTREMAILDWAEA---DKPIVRKISE 131 (140)
T ss_dssp EEEEEEEEC--CSC--CCCCSSCEEEEECHHHHTTSCBCGG---GHHHHHHHHC
T ss_pred EEEEEEEec--CCc--ccccccceeEeccHHHHhhCCCCcc---cHHHHHHHHh
Confidence 566666653 233 3456889999999999999988765 3566665543
No 11
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2e-20 Score=157.49 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=81.0
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
..+|++++++.+++|||+++. +.+.+.+.|++|||++|+||++.+||+||++||||+++..+..++.....+.......
T Consensus 5 ~~~v~vi~~~~~~~vLLv~~~-r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 83 (145)
T 2w4e_A 5 PRAVFILPVTAQGEAVLIRQF-RYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF 83 (145)
T ss_dssp CEEEEEEEEETTSEEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred CCEEEEEEEcCCCEEEEEEEE-ecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence 367888999989999998765 3333566899999999999999999999999999999987777664433333333444
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCC
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
++|++.... .+....+++|+.+++|++++++.++..
T Consensus 84 ~~f~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~ 119 (145)
T 2w4e_A 84 YPLLALGVT-LGAAQLEDTETIERVVLPLAEVYRMLE 119 (145)
T ss_dssp EEEEEEEEE-EC--------CEEEEEEEHHHHHHHHH
T ss_pred EEEEEEecc-cCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence 556555322 223445678899999999999987644
No 12
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.82 E-value=9.2e-20 Score=155.45 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=87.1
Q ss_pred CCCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 019517 157 GPCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 236 (340)
Q Consensus 157 ~~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~ 236 (340)
.+..++....++++|++++++ +++|||++|... + ..|.|.+|||++++||++.+||+||++||||+.+....+++..
T Consensus 18 ~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~-~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~ 94 (157)
T 4dyw_A 18 GPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRA-P-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVV 94 (157)
T ss_dssp --------CCCEEEEEEEEEE-TTEEEEEEECSS-S-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEE
T ss_pred CCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCC-C-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEE
Confidence 344555556678889999998 689999999733 2 7899999999999999999999999999999999888888766
Q ss_pred eeccCCCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEecccccc
Q 019517 237 HAHNVAFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVK 281 (340)
Q Consensus 237 ~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~ 281 (340)
........ ...++|.+..... .....+++|+.+++|++++++.+
T Consensus 95 ~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~ 140 (157)
T 4dyw_A 95 DHIDAANGEHWVAPVYLAHAFSG-EPRVVEPDRHEALGWFALDDLPQ 140 (157)
T ss_dssp EEEETTTTEEEEEEEEEESEEES-CCCCSCTTTEEEEEEEETTSCCS
T ss_pred EeeccCCCcEEEEEEEEEEEcCC-CcccCCCCcEeEEEEECHHHccc
Confidence 55442222 3334555544321 12223457899999999999988
No 13
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.82 E-value=1.2e-19 Score=147.83 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=92.0
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
++|++++++.+++|||++|.. |.|.+|||++++||++.+||+||++||||+.+....+++..............
T Consensus 3 ~~~~~vi~~~~~~vLl~~r~~------g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 76 (126)
T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM------GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV 76 (126)
T ss_dssp EEEEEEEECTTSCEEEEECTT------SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred eEEEEEEEcCCCEEEEEEECC------CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEE
Confidence 678999999889999999862 78999999999999999999999999999999888887765443333334445
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
+|++.... +. ..++.|+.+++|++++++.++.... ..+.+++.+++.
T Consensus 77 ~~~~~~~~--~~-~~~~~e~~~~~w~~~~el~~~~~~~---~~~~~l~~~~~~ 123 (126)
T 1vcd_A 77 HWFLMRGE--GA-PRLEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALER 123 (126)
T ss_dssp EEEEEEEE--SC-CCCCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHH
T ss_pred EEEEEEcC--CC-CCCCcceeeeEEcCHHHHHHhhcCh---hHHHHHHHHHHh
Confidence 66665432 22 2345788999999999999875433 245666666543
No 14
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.82 E-value=1.1e-19 Score=154.50 Aligned_cols=135 Identities=21% Similarity=0.388 Sum_probs=92.7
Q ss_pred CCCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE--EEE
Q 019517 158 PCVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV--IAF 235 (340)
Q Consensus 158 ~~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~--l~~ 235 (340)
|.+++........+++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+....+ ++.
T Consensus 19 P~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~-~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 97 (158)
T 3hhj_A 19 PGSMPIKSSLLIVVACALLDQDNRVLLTQRPE-GKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTF 97 (158)
T ss_dssp --------CEEEEEEEEEBCTTSEEEEEECCC-TTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEE
T ss_pred CccCCCCCceEEEEEEEEEeCCCEEEEEEeCC-CCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEE
Confidence 33445444555667778888889999999863 355789999999999999999999999999999999876533 443
Q ss_pred EeeccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 236 RHAHNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 236 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
.............+|.+.. ..+ .++..|..+++|++++++.+++++.. .+.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~---~~~il~~~~~ 155 (158)
T 3hhj_A 98 ASHGYETFHLLMPLYFCSH--YKG--VAQGREGQNLKWIFINDLDKYPMPEA---DKPLVQVLKN 155 (158)
T ss_dssp EEEECSSCEEEEEEEEESC--CBS--CCCCTTSCEEEEEEGGGGGGSCCCTT---THHHHHHHHH
T ss_pred EeeccCCcEEEEEEEEEEE--CCC--ccCCccccceEEEcHHHHhhCCCCcc---hHHHHHHHHH
Confidence 3333333333334444433 222 34457888999999999999988765 3566666554
No 15
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.82 E-value=2.3e-19 Score=160.09 Aligned_cols=130 Identities=24% Similarity=0.349 Sum_probs=100.5
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc---
Q 019517 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN--- 240 (340)
Q Consensus 164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~--- 240 (340)
+.++.++|+++|++ +++|||++|. ..|.|.+|||++++||++.+||+||++||||+.+....+++......
T Consensus 64 ~~~~~~~v~~vv~~-~~~vLLv~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~ 137 (205)
T 3q1p_A 64 YQTPKVDIRAVVFQ-NEKLLFVKEK-----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP 137 (205)
T ss_dssp SCCCEEEEEEEEEE-TTEEEEEEC--------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSC
T ss_pred CCCCcceEEEEEEE-CCEEEEEEEc-----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCC
Confidence 45566888889987 6899999986 36899999999999999999999999999999999888887765431
Q ss_pred --CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 241 --VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 241 --~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
.......++|.|.... +.+..+ .|+.+++|+++++++++.+... .+..+..+++..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~w~~~~el~~l~~~~~---~~~~i~~~~~~~~~~ 198 (205)
T 3q1p_A 138 SPSATHVYKIFIGCEIIG--GEKKTS-IETEEVEFFGENELPNLSIARN---TEDQIKEMFAYMKDP 198 (205)
T ss_dssp CCCSSCEEEEEEEEEEEE--ECCCCC-TTSCCEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCT
T ss_pred CCCCceEEEEEEEEEecC--CccCCC-CcceEEEEEeHHHhhhcCCCcc---HHHHHHHHHHHHhCC
Confidence 2234555677776643 334433 8899999999999998877654 367788888877664
No 16
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.82 E-value=1e-19 Score=154.67 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=90.3
Q ss_pred EEEEEEE---------eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee--
Q 019517 170 GVGGFVI---------NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-- 238 (340)
Q Consensus 170 ~V~~lv~---------~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~-- 238 (340)
++|++++ |++.++||+|+++ +++.|.+|||++|+||++.+||+||++||||+.+.....+.....
T Consensus 5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~----~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~ 80 (155)
T 3u53_A 5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD----GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKREL 80 (155)
T ss_dssp EEEEEEEEECCCSSSSSCSEEEEEEEESS----SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred EeEEEEEccccccceeCCCcEEEEEEecC----CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeee
Confidence 4677777 4567899999874 357899999999999999999999999999999987766643221
Q ss_pred --ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517 239 --HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 239 --~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~ 304 (340)
..........+|++........+. .++|+.+++|++++|+.++...+ -.+.+++.+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~~~---~~~~~L~~a~~~L~~ 144 (155)
T 3u53_A 81 NYVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCS 144 (155)
T ss_dssp EEEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHCSH---HHHHHHHHHHHHHHH
T ss_pred ecCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcCCH---HHHHHHHHHHHHHhC
Confidence 112222344556666544333333 34789999999999998764432 246777777665543
No 17
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.82 E-value=3.2e-19 Score=147.86 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=91.4
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEE
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFF 250 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f 250 (340)
+++++++.+++|||++|. ..+..+|.|.+|||++++||++.+||+||++||||+.+....+++...+..........+|
T Consensus 11 ~~~~ii~~~~~vLl~~r~-~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
T 2rrk_A 11 VVAAIIERDGKILLAQRP-AQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAW 89 (140)
T ss_dssp EEEEEEEETTEEEEEECC-SSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEcCCEEEEEEcC-CCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEE
Confidence 444445677899999986 3345689999999999999999999999999999999988777776544333333333455
Q ss_pred EEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517 251 ICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 251 ~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~ 303 (340)
.+... .+. ++..|+.+++|++++++.++++... .+.+++.+++..+
T Consensus 90 ~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~r~ 135 (140)
T 2rrk_A 90 HVPDF--HGT--LQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMALRA 135 (140)
T ss_dssp EESEE--EEC--CCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHHHHH
T ss_pred EEEee--CCC--cCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHHHhh
Confidence 55432 122 3456788999999999999888654 4677777766533
No 18
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.81 E-value=2.4e-19 Score=149.50 Aligned_cols=126 Identities=25% Similarity=0.361 Sum_probs=91.1
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCceE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQKS 246 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~~~ 246 (340)
..+++++++.+++|||++|.. .+.++|.|.||||++++||++.+||+||++||||+.+... ..+.............
T Consensus 9 ~~~~~vi~~~~~~vLl~~r~~-~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 87 (144)
T 3r03_A 9 LVTAAALIDPDGRVLLAQRPP-GKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLL 87 (144)
T ss_dssp EEEEEEEBCTTSCEEEEECCT-TSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEE
T ss_pred EEEEEEEEcCCCEEEEEEeCC-CCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEE
Confidence 446677778889999999863 3457899999999999999999999999999999998765 3333333333333333
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 302 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l 302 (340)
..+|.+.. ..+ .+...|..+++|++++++.+++++... +.+++.+.+..
T Consensus 88 ~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~~ 136 (144)
T 3r03_A 88 MPLYACRS--WRG--RATAREGQTLAWVRAERLREYPMPPAD---LPLIPILQDWL 136 (144)
T ss_dssp EEEEEECC--CBS--CCCCCSSCEEEEECGGGGGGSCCCTTT---TTHHHHHHHHC
T ss_pred EEEEEEEe--cCC--ccCCCCcceEEEEeHHHhccCCCCcch---HHHHHHHhCcc
Confidence 34454443 222 234578889999999999999987653 55666655443
No 19
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.81 E-value=2.8e-20 Score=157.86 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=80.6
Q ss_pred cceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----ccC
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA----HNV 241 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~----~~~ 241 (340)
....+|++++++.+++|||++|. .+.|.+|||++++||++.+||+||++||||+++....+++.+.. +..
T Consensus 19 ~~~~~v~~ii~~~~~~vLL~~r~------~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 92 (153)
T 3eds_A 19 IFXPSVAAVIKNEQGEILFQYPG------GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTY 92 (153)
T ss_dssp EEEEEEEEEEBCTTCCEEEECC---------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEEC
T ss_pred EEeeeEEEEEEcCCCeEEEEEcC------CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeec
Confidence 44567888888888999998774 68899999999999999999999999999999998888876521 111
Q ss_pred CCc----eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 242 AFQ----KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 242 ~~~----~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
..+ ....+|.+... .+.+..+++|+.+++|++++++.++.++.+
T Consensus 93 ~~~~~~~~~~~~f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~p 140 (153)
T 3eds_A 93 SNGDEVEYIVVVFECEVT--SGELRSIDGESLKLQYFSLSEKPPLALPYP 140 (153)
T ss_dssp TTSCEEEEEEEEEEEEEE--EECCC-------CEEEECGGGCCCBSSCCC
T ss_pred CCCCeEEEEEEEEEEEec--CCccccCCCcEEEEEEECHHHCchhcccCc
Confidence 111 13345555543 344555678899999999999999887665
No 20
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.81 E-value=1.7e-19 Score=148.48 Aligned_cols=123 Identities=29% Similarity=0.423 Sum_probs=91.8
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC----Cc
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA----FQ 244 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~----~~ 244 (340)
.+|++++++ +++|||++|. . |.|.+|||++++||++.+||+||++||||+.+....+++........ ..
T Consensus 5 ~~~~~vi~~-~~~vLl~~r~-----~-~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 77 (134)
T 2pbt_A 5 FSAGGVLFK-DGEVLLIKTP-----S-NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIF 77 (134)
T ss_dssp EEEEEEEEE-TTEEEEEECT-----T-SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEE
T ss_pred eEEEEEEEE-CCEEEEEEeC-----C-CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEE
Confidence 567888888 5799999986 2 89999999999999999999999999999999888877654332221 22
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~ 304 (340)
....+|.+... .+...+++ |+.+++|++++++.++...+. .+.++..+++.+++
T Consensus 78 ~~~~~~~~~~~--~~~~~~~~-e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~~ 131 (134)
T 2pbt_A 78 KTVKYYLMKYK--EGEPRPSW-EVKDAKFFPIKEAKKLLKYKG---DKEIFEKALKLKEK 131 (134)
T ss_dssp EEEEEEEEEEE--EECCCCCT-TSSEEEEEEHHHHHHHCCSHH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEEEec--CCCcCCCc-ceeEEEEEcHHHHHhhhcchh---HHHHHHHHHHHhhh
Confidence 33345555543 23333333 899999999999998766443 46788888777654
No 21
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.81 E-value=2.3e-19 Score=153.59 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=94.9
Q ss_pred cceeEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517 166 THQVGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ 244 (340)
Q Consensus 166 ~~~v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~ 244 (340)
...+++.+++++++ ++|||++|. ...+.|.|.+|||++++||++.+||+||++||||+.+....+++.........+
T Consensus 8 ~~~~~v~~vi~~~~~~~vLL~~r~--~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161)
T 3exq_A 8 PVELVTMVMVTDPETQRVLVEDKV--NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ 85 (161)
T ss_dssp CEEEEEEEEEBCTTTCCEEEECCC--CCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred CceEEEEEEEEeCCCCEEEEEEcc--CCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence 34566778888766 799999986 335677899999999999999999999999999999988888877655442333
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
...+.+++.+....+. +...|..+++|++++++.++++.+. .+.+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~ 136 (161)
T 3exq_A 86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAAS---LPEFLQVFTG 136 (161)
T ss_dssp SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCTT---HHHHHHHHTT
T ss_pred eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccChH---HHHHHHHHhh
Confidence 3333344433322333 3456778999999999999887664 4677777665
No 22
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.81 E-value=2.7e-19 Score=150.37 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=94.5
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
.+.+++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+....+++...+.........
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~-~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 99 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPE-NNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILI 99 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCT-TSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEE
T ss_pred eEEEEEEEEEECCEEEEEEeCC-CCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEE
Confidence 3456666667779999999974 356789999999999999999999999999999999988877766544444333333
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~ 303 (340)
.+|.+... .+. ++..|+.+++|++++++.++++... .+.+++.+.+.++
T Consensus 100 ~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~~~ 148 (153)
T 3ees_A 100 LFYEILYW--KGE--PRAKHHMMLEWIHPEELKHRNIPEA---NRKILHKIYKALG 148 (153)
T ss_dssp EEEEECEE--ESC--CCCSSSSEEEEECGGGGGGSCCCHH---HHTTHHHHHHHTT
T ss_pred EEEEEEEC--CCC--cCCCccceEEEecHHHhhhCCCCcc---hHHHHHHHHHhhc
Confidence 44555432 222 4467888999999999999887653 4666666665443
No 23
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.81 E-value=3.3e-19 Score=147.59 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=90.5
Q ss_pred eEEEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE----EEEeeccC
Q 019517 169 VGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI----AFRHAHNV 241 (340)
Q Consensus 169 v~V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l----~~~~~~~~ 241 (340)
.+|++++++. +++|||++|+. .+|.|.+|||++++||++.+||+||++||||+.+....++ +.......
T Consensus 4 ~~~~~vi~~~~~~~~~vLl~~r~~----~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 79 (138)
T 1ktg_A 4 KAAGLVIYRKLAGKIEFLLLQASY----PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK 79 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEESS----TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred EEEEEEEEEecCCCcEEEEEEccC----CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence 5678888875 47899999862 4679999999999999999999999999999966544443 22222222
Q ss_pred CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~ 303 (340)
.......+|++..... ....+++|+.+++|++++++.++.... ..+.+++.+.++++
T Consensus 80 ~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~ 136 (138)
T 1ktg_A 80 GKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA 136 (138)
T ss_dssp TEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccc---hHHHHHHHHHHHhh
Confidence 2234455666765332 233456899999999999999876544 24677777777664
No 24
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.81 E-value=9.4e-20 Score=159.91 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=97.1
Q ss_pred eEEEEEEEe---C----CceEEEEEecc-----CCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEE
Q 019517 169 VGVGGFVIN---D----NNEVLVVQEKY-----CNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFR 236 (340)
Q Consensus 169 v~V~~lv~~---~----~~~VLLvqr~~-----~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~ 236 (340)
++|+++|+. + +++|||++|.. +.....|.|.+|||++|+||++.+||+||++||||+++....+++.+
T Consensus 28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~ 107 (187)
T 3i9x_A 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107 (187)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence 666666654 2 46899999942 22357899999999999999999999999999999999888888876
Q ss_pred eeccCCC-c-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 237 HAHNVAF-Q-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 237 ~~~~~~~-~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
....... + ....+|++.............+|+.+++|++++++.++++.+. .+.++..++++++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~---~~~il~~a~~~l~~~ 175 (187)
T 3i9x_A 108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD---HLDMLKKAFSAITEE 175 (187)
T ss_dssp CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTT---HHHHHHHHHHHHHHH
T ss_pred cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCcc---HHHHHHHHHHHHHhh
Confidence 5433221 1 2334444443221111123457888999999999998877664 378899999888775
No 25
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.81 E-value=6.5e-19 Score=149.27 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=89.9
Q ss_pred cceeEEEEEEEeCCceEEEEEeccC--CCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-
Q 019517 166 THQVGVGGFVINDNNEVLVVQEKYC--NPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA- 242 (340)
Q Consensus 166 ~~~v~V~~lv~~~~~~VLLvqr~~~--~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~- 242 (340)
....++++++++.+++|||++|... .+..+|.|.+|||++++||++.+||+||++||||+.+....+++........
T Consensus 11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~ 90 (159)
T 1sjy_A 11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG 90 (159)
T ss_dssp CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence 3456788888888899999998631 3446799999999999999999999999999999999888888765543222
Q ss_pred CceEEEEEEEEEecCCCc-ccC-CcCceeeEEEEeccccccCCCCC
Q 019517 243 FQKSDLFFICMLKPLSTE-IKV-DDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~~~~-~~~-~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
......+|.+... .+. +.+ +++|+.+++|++++++.++....
T Consensus 91 ~~~~~~~f~~~~~--~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 134 (159)
T 1sjy_A 91 VLILRHVWLAEPE--PGQTLAPAFTDEIAEASFVSREDFAQLYAAG 134 (159)
T ss_dssp CEEEEEEEEEEEC--SSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred ceEEEEEEEEEcc--CCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence 2344456666553 233 555 67889999999999998865443
No 26
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.81 E-value=3.9e-19 Score=154.36 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=94.1
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
.++++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+.+..+..++.+...........
T Consensus 38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~ 117 (180)
T 2fkb_A 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG 117 (180)
T ss_dssp EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence 46788888888999999886444445889999 99999999999999999999999999877777765544433333334
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccC--CCCCCCchHHHHHHHHHHH
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~--~~~~~~~~~~~il~~~l~~ 301 (340)
.+|++. ..+.+.++++|+.+++|++++++.++ ++.+ ..+.++..+++.
T Consensus 118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~---~~~~~l~~~~~~ 167 (180)
T 2fkb_A 118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEFTP---DSLKALALWMKR 167 (180)
T ss_dssp EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGBCH---HHHHHHHHHHHH
T ss_pred EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHhCC---cHHHHHHHHHHh
Confidence 455555 23455567789999999999999988 4432 234555555443
No 27
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.81 E-value=1.1e-18 Score=145.01 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=90.6
Q ss_pred CCcceeEEEEEEEe--CCce--EEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec
Q 019517 164 NATHQVGVGGFVIN--DNNE--VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH 239 (340)
Q Consensus 164 ~~~~~v~V~~lv~~--~~~~--VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~ 239 (340)
+..+.++|++++++ ++++ |||++|... ++.|.+|||++++||++.+||+||++||||+.+....+++.+...
T Consensus 5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~----~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~ 80 (139)
T 2yyh_A 5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP----PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP 80 (139)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEECSS----SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence 34456778888887 6788 999998632 344999999999999999999999999999999888887765542
Q ss_pred cCC--CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccc--cCCCCCCCchHHHHHHHHHH
Q 019517 240 NVA--FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFV--KQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 240 ~~~--~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~--~~~~~~~~~~~~~il~~~l~ 300 (340)
... ......+|.+... +.+. .++|+.+++|++++++. .+.+.. ++++..+++
T Consensus 81 ~~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~~-----~~~l~~~l~ 136 (139)
T 2yyh_A 81 ERDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFDH-----KKIILDFLK 136 (139)
T ss_dssp TSCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTTH-----HHHHHHHHH
T ss_pred CcCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCCH-----HHHHHHHHh
Confidence 221 2234456666652 2332 45789999999999999 665532 566666543
No 28
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.80 E-value=6.3e-19 Score=150.14 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=87.6
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEe----------
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRH---------- 237 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~---------- 237 (340)
.++|++++++ +++|||++|+ ..|.|.+|||++++||++.+||+||++||||+++....+++...
T Consensus 6 ~~~v~~vi~~-~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (159)
T 3f6a_A 6 HFTVSVFIVC-KDKVLLHLHK-----KAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK 79 (159)
T ss_dssp CEEEEEEEEE-TTEEEEEECS-----SSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCE
T ss_pred eEEEEEEEEE-CCEEEEEEcC-----CCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccc
Confidence 3567888887 6899999986 36899999999999999999999999999999988766553210
Q ss_pred ---------ecc--CCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 238 ---------AHN--VAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 238 ---------~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
.+. .......++|++.. ..+.+.++++|+.+++|++++++.++++.+. -++.+.+...
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~ 148 (159)
T 3f6a_A 80 LLINPIHTILGDVSPNHSHIDFVYYATT--TSFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEAL 148 (159)
T ss_dssp EECCCSEEEEECSSSSSCEEEEEEEEEC--SCSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHH
T ss_pred cccCccccccccCCCCceEEEEEEEEEe--CCCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHH
Confidence 000 11112334555554 3455566678999999999999999985543 2344444443
No 29
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.80 E-value=6.7e-19 Score=151.63 Aligned_cols=123 Identities=23% Similarity=0.349 Sum_probs=91.6
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
..++|++++++ +++|||++|.. ..|.|.+|||++++||++.+||+||++||||+++....+++............
T Consensus 22 ~~~~v~~ii~~-~~~vLL~~r~~----~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 96 (171)
T 3id9_A 22 MQVRVTGILIE-DEKVLLVKQKV----ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL 96 (171)
T ss_dssp CEEEEEEEEEE-TTEEEEEECSS----TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred eEEEEEEEEEE-CCEEEEEEEEC----CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence 34677888876 58999999863 37899999999999999999999999999999998888887766655544555
Q ss_pred EEEEEEEEecCCCccc-----CCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIK-----VDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~-----~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
.++|.+... .+... .+++|+.+++|++++++.++++.+.. +.+++.++
T Consensus 97 ~~~~~~~~~--~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~---~~~l~~~~ 149 (171)
T 3id9_A 97 HITFLLERI--EGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETF---INLISGGL 149 (171)
T ss_dssp EEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTC---SHHHHHGG
T ss_pred EEEEEEEEc--CCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHH---HHHHHHhh
Confidence 566666543 22222 25688999999999999999877653 45555553
No 30
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.80 E-value=2.1e-19 Score=159.75 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=89.6
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
.+|++++++++ +|||++|. +.+..++.|++|||++|+||++.+||+||++||||+.+..+..++.....+........
T Consensus 50 ~av~vl~~~~~-~vLLvrq~-r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 127 (198)
T 1vhz_A 50 EAVMIVPIVDD-HLILIREY-AVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMN 127 (198)
T ss_dssp CEEEEEEEETT-EEEEEEEE-ETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEE
T ss_pred CEEEEEEEECC-EEEEEEcc-cCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEE
Confidence 45777778876 99999885 44556789999999999999999999999999999999988888776655554445555
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
+|++..... .....+++|..++.|++++++.++....
T Consensus 128 ~f~a~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~~ 164 (198)
T 1vhz_A 128 IVVAQDLYP-ESLEGDEPEPLPQVRWPLAHMMDLLEDP 164 (198)
T ss_dssp EEEEEEEEE-CCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred EEEEEeCCc-ccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 666654322 2334567888999999999999876544
No 31
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.80 E-value=3.5e-19 Score=149.87 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=89.8
Q ss_pred eEEEEEEE---eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEee---c-
Q 019517 169 VGVGGFVI---NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHA---H- 239 (340)
Q Consensus 169 v~V~~lv~---~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~---~- 239 (340)
.+|.++++ +++++|||++|.. .|.|.+|||++|+||++.+||+||++||||+++... .+...... .
T Consensus 6 ~~v~vvi~~~~~~~~~vLl~~r~~-----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (149)
T 3son_A 6 FQVLVIPFIKTEANYQFGVLHRTD-----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHF 80 (149)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESS-----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGT
T ss_pred eEEEEEEEEecCCCeEEEEEEEcC-----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceee
Confidence 45666665 4668999999962 389999999999999999999999999999998764 22222111 1
Q ss_pred --cCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 240 --NVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 240 --~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
........++|.+......+.+.+ ++|+.+++|++++++.++...+. .+.++..+.+.++.+
T Consensus 81 ~~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~~ 144 (149)
T 3son_A 81 SFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWDS---NKTALYELNERLKNN 144 (149)
T ss_dssp CSSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCHH---HHHHHHHHHHHHHTT
T ss_pred ccCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCHH---HHHHHHHHHHHHhhc
Confidence 111123334566655322344544 48999999999999998876543 477888887777654
No 32
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.80 E-value=7.8e-19 Score=148.95 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=86.9
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcce--eeEEEEEEeeccCCC-
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTE--FVEVIAFRHAHNVAF- 243 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~--~~~~l~~~~~~~~~~- 243 (340)
+.++|++++++.+++|||++|... ..+|.|.+|||++++||++.+||+||++||||+.+. ...+++.........
T Consensus 17 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 94 (160)
T 1rya_A 17 PLVSLDFIVENSRGEFLLGKRTNR--PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 94 (160)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSS--SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred cEEEEEEEEEcCCCEEEEEeccCC--CCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence 347889999988899999999742 258999999999999999999999999999999953 556665543322211
Q ss_pred -------ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC
Q 019517 244 -------QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 244 -------~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
.....+|.+.. ..+.+..+++|+.+++|++++++.++++.++
T Consensus 95 ~~~~~~~~~~~~~f~~~~--~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 143 (160)
T 1rya_A 95 SGTDFTTHYVVLGFRFRV--SEEELLLPDEQHDDYRWLTSDALLASDNVHA 143 (160)
T ss_dssp TBSSSCEEEEEEEEEEEC--CGGGCCCCSSSEEEEEEECHHHHHHCTTBCH
T ss_pred cCCCcCcEEEEEEEEEEc--CccccccCCCccceEEEecHHHHhhccccCH
Confidence 22334454543 2344555678999999999999999876543
No 33
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.80 E-value=7.8e-20 Score=163.35 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=100.4
Q ss_pred HHHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeCCceEE
Q 019517 108 IHWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVINDNNEVL 183 (340)
Q Consensus 108 ~~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~~~~VL 183 (340)
+.|+..+++.| |+++..+...+++ +....+. ++ .+..+|++++++.+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~---G~~~~~~-----~~-----------------~~~~av~v~i~~~~~~vL 58 (207)
T 1mk1_A 4 HDFETISSETLHTGAIFALRRDQVRMPG---GGIVTRE-----VV-----------------EHFGAVAIVAMDDNGNIP 58 (207)
T ss_dssp --CCEEEEEEEEECSSEEEEEEEEC--------CEEEE-----EE-----------------EECCEEEEEECCTTSEEE
T ss_pred CCcEEEeEEEEEeCCEEEEEEEEEECCC---CCEEEEE-----EE-----------------eCCCEEEEEEEcCCCEEE
Confidence 56888877777 8999888887766 2222111 11 112467888888889999
Q ss_pred EEEeccCCCCCCCceEcceeeec-CCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcc-
Q 019517 184 VVQEKYCNPAFAGLWKLPTGFID-ESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEI- 261 (340)
Q Consensus 184 Lvqr~~~~~~~~g~W~lPGG~ve-~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~- 261 (340)
|+++. +.+...+.|++|||+++ +||++.+||+||++||||+.+..+..++..+..+........+|++.........
T Consensus 59 Lvrr~-r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 137 (207)
T 1mk1_A 59 MVYQY-RHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPE 137 (207)
T ss_dssp EEEEE-ETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC--
T ss_pred EEEee-cCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCC
Confidence 99986 44456789999999999 9999999999999999999998888777554433333334455666542211111
Q ss_pred cCCcCceeeEEEEeccccccCCCCC
Q 019517 262 KVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 262 ~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
..+++|+.+++|++++++.++....
T Consensus 138 ~~~~~E~~~~~Wv~~~el~~~~~~~ 162 (207)
T 1mk1_A 138 AHHEEADMTMGWYPIAEAARRVLRG 162 (207)
T ss_dssp --------CEEEEEHHHHHHHHHTT
T ss_pred CCCCCceEEEEEEEHHHHHHHHHcC
Confidence 2456789999999999998876544
No 34
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.79 E-value=7.1e-20 Score=159.62 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=89.0
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
.+|++++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+..+..++..............
T Consensus 42 ~~v~v~i~~~~~~vLL~~r~~-~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 120 (182)
T 2yvp_A 42 AASFVLPVTERGTALLVRQYR-HPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFH 120 (182)
T ss_dssp EEEEEEEBCTTSEEEEEEEEE-GGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEE
T ss_pred CEEEEEEEcCCCEEEEEEecc-CCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEE
Confidence 578888888889999999863 3446789999999999999999999999999999999888777654443333334455
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
+|++......+.+..+++|+.+++|++++++.++....
T Consensus 121 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 158 (182)
T 2yvp_A 121 PFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKG 158 (182)
T ss_dssp EEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred EEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence 56554322123444567899999999999998765443
No 35
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.79 E-value=2.1e-18 Score=160.52 Aligned_cols=138 Identities=19% Similarity=0.273 Sum_probs=103.5
Q ss_pred CCCCCCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee
Q 019517 159 CVLPGNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA 238 (340)
Q Consensus 159 ~~lp~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~ 238 (340)
|....++...++|.+++. .+++|||++|.. . ..|.|.+|||++|+||++++||+||++||||+++..+.+++....
T Consensus 131 C~~~~yp~~~~~viv~v~-~~~~vLL~rr~~-~--~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~ 206 (269)
T 1vk6_A 131 CRERYYPQIAPCIIVAIR-RDDSILLAQHTR-H--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW 206 (269)
T ss_dssp SSCEECCCCEEEEEEEEE-ETTEEEEEEETT-T--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred CCCEecCCCCcEEEEEEE-eCCEEEEEEecC-C--CCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence 344445555555555444 568999999863 2 268999999999999999999999999999999998888876543
Q ss_pred ccCCCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhccc
Q 019517 239 HNVAFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRY 306 (340)
Q Consensus 239 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y 306 (340)
.. . ....++|++... ++++.++++|+.+++|++++|++.++.... +.+.+++.++++++..|
T Consensus 207 ~~-~-~~~~~~f~a~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~s--i~~~li~~~l~~~r~~~ 268 (269)
T 1vk6_A 207 PF-P-QSLMTAFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPGT--VARRLIEDTVAMCRAEY 268 (269)
T ss_dssp ET-T-EEEEEEEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTTS--HHHHHHHHHHHHHHHCC
T ss_pred CC-C-CEEEEEEEEEEC--CCCcCCCCcceEEEEEEEHHHhhhcccCcH--HHHHHHHHHHHHHHhhc
Confidence 21 1 234455666553 345666778999999999999998866543 77899999999888654
No 36
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.79 E-value=1.8e-18 Score=148.83 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=90.5
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee-----ccC
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA-----HNV 241 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~-----~~~ 241 (340)
.+.+|++++++.+++|||++|. ..+.|.+|||++++||++.+||+||++||||+.+....+++.... .+.
T Consensus 7 ~~~~v~~~i~~~~~~vLl~~r~-----~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
T 2kdv_A 7 YRPNVGIVICNRQGQVMWARRF-----GQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPK 81 (164)
T ss_dssp EEEEEEEEEECTTSEEEEEEET-----TCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCT
T ss_pred CCcEEEEEEEccCCEEEEEEEc-----CCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCc
Confidence 4567888999988999999986 368999999999999999999999999999999988877765321 110
Q ss_pred ----------CCceEEEEEEEEEecCCCcccCC---cCceeeEEEEeccccccCCCCCCCchHHHHHHHH
Q 019517 242 ----------AFQKSDLFFICMLKPLSTEIKVD---DLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDIC 298 (340)
Q Consensus 242 ----------~~~~~~~~f~~~~~~~~~~~~~~---~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~ 298 (340)
..+....+|++........+.++ ..|+.+++|++++++.+.........++.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l 151 (164)
T 2kdv_A 82 RLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEF 151 (164)
T ss_dssp TTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHH
T ss_pred ceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHH
Confidence 11234567777764333334433 3589999999999987654433322344444433
No 37
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.79 E-value=7e-19 Score=151.79 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=82.7
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
.+|++++++ +++|||+++. +.+.+++.|.+|||++|+||++.+||+||++||||+ +.....++.....+........
T Consensus 35 ~~v~vii~~-~~~vLL~~~~-r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~ 111 (170)
T 1v8y_A 35 PAVAVIALR-EGRMLFVRQM-RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTH 111 (170)
T ss_dssp CEEEEEEEE-TTEEEEEECC-BTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEE
T ss_pred CeEEEEEEE-CCEEEEEEEE-eCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEE
Confidence 568888888 8999999885 444578899999999999999999999999999999 8888877765544444344556
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCC
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
+|++.... ......+++|+.+++|++++++.++....
T Consensus 112 ~f~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 148 (170)
T 1v8y_A 112 VFLAENLK-EVEAHPDEDEAIEVVWMRPEEALERHQRG 148 (170)
T ss_dssp EEEEEEEE-ECC--------CEEEEECHHHHHHHHHTT
T ss_pred EEEEEecc-ccCCCCCCCceEEEEEEEHHHHHHHHHCC
Confidence 66666432 13334467889999999999998765433
No 38
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.78 E-value=1.8e-18 Score=145.68 Aligned_cols=111 Identities=22% Similarity=0.222 Sum_probs=80.6
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc--e
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ--K 245 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~--~ 245 (340)
+++|++++. .+++|||++|.. .+. ++.|.+|||++++||++.+||+||++||||+++....+++.........+ .
T Consensus 8 ~~~v~~ii~-~~~~vLl~~r~~-~~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T 2b0v_A 8 NVTVAAVIE-QDDKYLLVEEIP-RGT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY 84 (153)
T ss_dssp EEEEEEECE-ETTEEEEEEECS-SSS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred CEEEEEEEe-eCCEEEEEEEcC-CCC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence 355565554 568999999863 333 78999999999999999999999999999999988888776533222112 2
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
...+|.+..... ......++|+.+++|++++++.++
T Consensus 85 ~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~ 120 (153)
T 2b0v_A 85 LRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAK 120 (153)
T ss_dssp EEEEEEEEEEEE-CTTSCCCTTEEEEEEEEHHHHHHT
T ss_pred EEEEEEEEeCCC-CCCCCCCCCeeeEEEecHHHHhhh
Confidence 234455554321 112345678999999999999986
No 39
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.78 E-value=1.8e-18 Score=154.48 Aligned_cols=129 Identities=26% Similarity=0.480 Sum_probs=98.8
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC--
Q 019517 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV-- 241 (340)
Q Consensus 164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~-- 241 (340)
+.++.++|.++|+++ ++|||++|. .|.|.+|||++++||++.+||+||++||||+.+....+++.......
T Consensus 66 y~~~~~~v~~vv~~~-~~vLLvrr~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~ 138 (206)
T 3o8s_A 66 YQTPKLDTRAAIFQE-DKILLVQEN------DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNP 138 (206)
T ss_dssp --CCEEEEEEEEEET-TEEEEEECT------TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC
T ss_pred CCCCCccEEEEEEEC-CEEEEEEec------CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCC
Confidence 455668888888875 899999985 67899999999999999999999999999999988888877652211
Q ss_pred ---CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 242 ---AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 242 ---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
......++|.|.... +.+..+ .|+.+++|+++++++++++... ++.++..+++..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~~~-~E~~~~~w~~~~el~~l~~~~~---~~~~l~~~~~~~~~~ 199 (206)
T 3o8s_A 139 AKSAHRVTKVFILCRLLG--GEFQPN-SETVASGFFSLDDLPPLYLGKN---TAEQLALCLEASRSE 199 (206)
T ss_dssp -----CEEEEEEEEEEEE--ECCCCC-SSCSEEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCS
T ss_pred CCCCceEEEEEEEEEecC--CeecCC-CCceEEEEEeHHHhhhccCCCc---hHHHHHHHHHHHHCC
Confidence 233445667776532 333333 7899999999999999887554 467788888877654
No 40
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.78 E-value=3.7e-18 Score=144.00 Aligned_cols=126 Identities=21% Similarity=0.337 Sum_probs=88.4
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc-CCCceE
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHN-VAFQKS 246 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~-~~~~~~ 246 (340)
.++|++++. .+++|||++|. . ...+.|.+|||++++||++.+||+||++||||+++....+++...... ......
T Consensus 5 ~~~v~~ii~-~~~~vLl~~r~-~--~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T 3shd_A 5 HVTVACVVH-AEGKFLVVEET-I--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFL 80 (153)
T ss_dssp EEEEEEEEE-ETTEEEEEEEE-E--TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEE
T ss_pred ceEEEEEEE-eCCEEEEEEec-C--CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEE
Confidence 455666555 46899999986 2 357889999999999999999999999999999998888887653332 223344
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
.++|.+..... ....++++|+.+++|++++++...+... ....+.++..++
T Consensus 81 ~~~f~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~ 131 (153)
T 3shd_A 81 RFLFAIELEQI-CPTQPHDSDIDCCRWVSAEEILQASNLR-SPLVAESIRCYQ 131 (153)
T ss_dssp EEEEEEECSSC-CCCCCCSTTCCEEEEECHHHHHTCSCBS-STHHHHHHHHHH
T ss_pred EEEEEEEcccc-CcCCCCcccceeeEEecHHHhhcccccc-CchHHHHHHHHH
Confidence 46666665322 2245567899999999999994333222 123445554444
No 41
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.78 E-value=6.4e-19 Score=149.86 Aligned_cols=129 Identities=20% Similarity=0.310 Sum_probs=90.2
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEE-EeeccC----
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAF-RHAHNV---- 241 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~-~~~~~~---- 241 (340)
.+.+|++++++.+++|||++|.. .+|.|.+|||++++||++.+||+||++||||+.+..+..... ...+..
T Consensus 13 ~~~~v~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 88 (165)
T 1f3y_A 13 YRRNVGICLMNNDKKIFAASRLD----IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV 88 (165)
T ss_dssp CCCEEEEEEECTTSCEEEEEETT----EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHH
T ss_pred eeeeEEEEEECCCCcEEEEecCC----CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccc
Confidence 34668888999889999999862 358999999999999999999999999999999754322110 001100
Q ss_pred -----------CCceEEEEEEEEEecCCCcccC-----CcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHh
Q 019517 242 -----------AFQKSDLFFICMLKPLSTEIKV-----DDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 242 -----------~~~~~~~~f~~~~~~~~~~~~~-----~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~ 303 (340)
..+....+|++........+.. +++|+.+++|++++++.++..... ..+++.++..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~----~~~~~~~~~~l~ 162 (165)
T 1f3y_A 89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFK----KPVYKEVLSVFA 162 (165)
T ss_dssp HHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGG----HHHHHHHHHHHG
T ss_pred cccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhh----HHHHHHHHHHhh
Confidence 0122456777776443333333 357899999999999999765543 455666655554
No 42
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.78 E-value=7.8e-18 Score=148.06 Aligned_cols=130 Identities=20% Similarity=0.310 Sum_probs=94.1
Q ss_pred CcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc
Q 019517 165 ATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ 244 (340)
Q Consensus 165 ~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~ 244 (340)
..+.++|++++++ +++|||++|... ...|.|.+|||++++||++.+||+||++||||+.+....++++..... ..
T Consensus 37 ~~~~~~v~~ii~~-~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~--~~ 111 (189)
T 3cng_A 37 QNPKVIVGCIPEW-ENKVLLCKRAIA--PYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPH--IS 111 (189)
T ss_dssp CCCEEEEEEEEEE-TTEEEEEEESSS--SSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG--GT
T ss_pred CCCceEEEEEEEe-CCEEEEEEccCC--CCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecCC--Cc
Confidence 3455778888887 789999999643 237899999999999999999999999999999998777776543322 23
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~ 304 (340)
...++|++... .+.+. .++|+.+++|++++++....+..+ ..+.++..+++..+.
T Consensus 112 ~~~~~f~~~~~--~~~~~-~~~E~~~~~W~~~~el~~~~l~~~--~~~~~l~~~l~~~~~ 166 (189)
T 3cng_A 112 QVYMLFRAKLL--DLDFF-PGIESLEVRLFGEQEIPWNDIAFR--VIHDPLKRYMEERHH 166 (189)
T ss_dssp EEEEEEEEEEC--CSCCC-CCTTEEEEEEECTTTCCGGGBSCH--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEeC--CCccC-CCccceeEEEECHHHcCcccccCh--HHHHHHHHHHHhccC
Confidence 45566666653 23333 367899999999999983222222 246677777766554
No 43
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.78 E-value=8e-19 Score=154.58 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred cccCCCCCCCCCCcceeEEEEEEEeCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee
Q 019517 153 WIPDGPCVLPGNATHQVGVGGFVINDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV 230 (340)
Q Consensus 153 w~~~~~~~lp~~~~~~v~V~~lv~~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~ 230 (340)
|+...+.+.+..+..+.++++++++.++ +|||++|.......+|.|.+|||++|+||++.+||+||++||||+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~ 98 (194)
T 1nqz_A 19 WLSGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAV 98 (194)
T ss_dssp CBCC----------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGC
T ss_pred HHhhcChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccce
Confidence 3333333333344555667777778777 99999987544457899999999999999999999999999999999888
Q ss_pred EEEEEEeeccCCCceEEEEEEEEEecCCCc-ccCCcCceeeEEEEecccc-ccCC
Q 019517 231 EVIAFRHAHNVAFQKSDLFFICMLKPLSTE-IKVDDLEIKGAKWMPFMEF-VKQP 283 (340)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~E~~~~~Wv~leel-~~~~ 283 (340)
.+++.........+....+|++.... ... ...+++|+.+++|++++++ .+..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~ 152 (194)
T 1nqz_A 99 TLLGELDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRAVPL 152 (194)
T ss_dssp EEEEECCCEEETTTEEEEEEEEEECG-GGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred EEEEEccCccCCCCeEEEEEEEEecC-CccccCCCccceeEEEEEEHHHhccCCC
Confidence 88876554444444555666676532 223 4456789999999999999 7643
No 44
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.77 E-value=5.9e-18 Score=147.31 Aligned_cols=123 Identities=16% Similarity=0.129 Sum_probs=87.5
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceE
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKS 246 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~ 246 (340)
++++ ++++++.+++|||++|.. +...|.|.+|||++++||++.+||+||++||||+.+....+++............
T Consensus 24 ~~~~-~~~vi~~~~~vLL~~r~~--~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 100 (176)
T 3q93_A 24 SRLY-TLVLVLQPQRVLLGMKKR--GFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL 100 (176)
T ss_dssp EEEE-EEEEEECSSEEEEEEECS--STTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred CcEE-EEEEEEeCCEEEEEEEcC--CCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence 3444 444556778999999853 3468999999999999999999999999999999998888887665443332222
Q ss_pred --EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 247 --DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 247 --~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
..+|.+.. ..+.+ ...|..+++|++++++.++++.+. .+.++..++
T Consensus 101 ~~~~~f~~~~--~~~~~--~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 148 (176)
T 3q93_A 101 MDVHVFCTDS--IQGTP--VESDEMRPCWFQLDQIPFKDMWPD---DSYWFPLLL 148 (176)
T ss_dssp EEEEEEEESC--EESCC--CCCSSEEEEEEETTCCCGGGBCTT---HHHHHHHHH
T ss_pred EEEEEEEEEC--CCCCc--CCCcceeeEEeeHHHccccccCcc---hHHHHHHHH
Confidence 23444432 22332 345667889999999998887665 255555554
No 45
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=5.3e-18 Score=149.98 Aligned_cols=133 Identities=19% Similarity=0.337 Sum_probs=87.4
Q ss_pred ceeEEEEEEEeCCc-eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCc-ceeeE----EEEEEeecc
Q 019517 167 HQVGVGGFVINDNN-EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVD-TEFVE----VIAFRHAHN 240 (340)
Q Consensus 167 ~~v~V~~lv~~~~~-~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~-~~~~~----~l~~~~~~~ 240 (340)
..++++++|++.++ +|||++++ ..|.|.+|||++|+||++.+||+||++||||+. +.... .+.......
T Consensus 44 ~h~~~~~vv~~~~~~~vLL~~r~-----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 118 (197)
T 3fcm_A 44 AHLTSSAFAVNKERNKFLMIHHN-----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG 118 (197)
T ss_dssp EEEEEEEEEECTTSCEEEEEEET-----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECC
T ss_pred ccEEEEEEEEECCCCEEEEEEec-----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecC
Confidence 34567888888765 99999986 467999999999999999999999999999998 44211 111111110
Q ss_pred -CC-------CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccCC
Q 019517 241 -VA-------FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYCG 308 (340)
Q Consensus 241 -~~-------~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~g 308 (340)
.. .....++|++... ....+.++++|+.+++|++++++.++...+. ++.+++.+++++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~~ 190 (197)
T 3fcm_A 119 HIKRGKYVSSHLHLNLTYLIECS-EDETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSKE 190 (197)
T ss_dssp EEETTEEECCEEEEEEEEEEECC-TTSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC----
T ss_pred ccccCcccCCceeEEEEEEEEeC-CCcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhcccc
Confidence 00 0112244555443 2234556778999999999999998866443 466888898888876543
No 46
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.77 E-value=1.6e-18 Score=144.83 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=86.8
Q ss_pred eEEEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeec------
Q 019517 169 VGVGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAH------ 239 (340)
Q Consensus 169 v~V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~------ 239 (340)
++|++++++.+ ++|||++|... +|.|.+|||++++||++.+||+||++||||+.+... .+++.....
T Consensus 10 ~~v~~~i~~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 85 (150)
T 2o1c_A 10 VSILVVIYAQDTKRVLMLQRRDD----PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS 85 (150)
T ss_dssp EEEEEEEEETTTCEEEEEECSSS----TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCG
T ss_pred eEEEEEEEeCCCCEEEEEEecCC----CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeec
Confidence 67889999864 89999998632 689999999999999999999999999999998653 344332111
Q ss_pred ----cC---CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 240 ----NV---AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 240 ----~~---~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
.. .......+|.+... .+.. ....|+.+++|++++++.++.+.+. .+.+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~f~~~~~--~~~~-~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~ 147 (150)
T 2o1c_A 86 HLRHRYAPGVTRNTESWFCLALP--HERQ-IVFTEHLAYKWLDAPAAAALTKSWS---NRQAIEQFVI 147 (150)
T ss_dssp GGGGGBCTTCCEEEEEEEEEEES--SCCC-CCCSSSSCEEEEEHHHHHHHCSCHH---HHHHHHHHTT
T ss_pred ccccccCCCCcceEEEEEEEEcC--CCCC-cChhHhhccEeecHHHHHhhhcCHH---HHHHHHHHHH
Confidence 01 11234455666553 2222 2347889999999999999876543 4666666543
No 47
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.76 E-value=2.8e-18 Score=145.90 Aligned_cols=118 Identities=21% Similarity=0.373 Sum_probs=84.1
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEee----------
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHA---------- 238 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~---------- 238 (340)
++++++|++ +++|||++|. ..|.|.+|||++++||++.+||+||++||||+++.....++....
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~-----~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 75 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHK-----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPL 75 (156)
T ss_dssp EEEEEECEE-TTEEEEEECT-----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCS
T ss_pred eEEEEEEEE-CCEEEEEEEc-----CCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccc
Confidence 457788887 7899999986 368999999999999999999999999999999876554321100
Q ss_pred ------ccCCCc---eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517 239 ------HNVAFQ---KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 239 ------~~~~~~---~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~ 304 (340)
...... ....+|.+.. .+.|+.+++|++++++.++++.+. .+.+++.+++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~ 138 (156)
T 1k2e_A 76 VILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR 138 (156)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH---HHHHHHHHHHHHHh
Confidence 001111 1223344442 234678999999999999887654 47777777776544
No 48
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.76 E-value=3.1e-18 Score=147.44 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=84.6
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceee--EEEEEEeeccCCCc
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV--EVIAFRHAHNVAFQ 244 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~--~~l~~~~~~~~~~~ 244 (340)
..++++++++.+++|||++|...+..++|.|+ +|||++++||++.+||+||++||||+.+... ..++....+.....
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~ 113 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 113 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence 35678888988899999998655555689999 9999999999999999999999999998763 44544331222222
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
....+|.+.. .+.+.+++.|+.+++|++++++.++
T Consensus 114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~ 148 (171)
T 1q27_A 114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR 148 (171)
T ss_dssp SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence 3444555544 4455566788999999999999854
No 49
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.76 E-value=1.1e-18 Score=154.64 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=83.1
Q ss_pred eeEEEEEEE--eCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce
Q 019517 168 QVGVGGFVI--NDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK 245 (340)
Q Consensus 168 ~v~V~~lv~--~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~ 245 (340)
...++++++ +.+++|||++|.. .+|.|.+|||++|+||++.+||+||++||||+++....+++.+.... ...
T Consensus 40 ~~~~~~vi~~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~ 113 (194)
T 2fvv_A 40 KKRAACLCFRSESEEEVLLVSSSR----HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKH 113 (194)
T ss_dssp EEEEEEEEESSTTCCEEEEEECSS----CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTE
T ss_pred cccEEEEEEEECCCCEEEEEEEeC----CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--Cce
Confidence 355666666 3568999999862 35899999999999999999999999999999998888887765422 223
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc--cCCCCCCcCcccchhhhh
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR--YCGLYPHQLVSAFDGQTS 323 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~--y~g~~~~~l~~~f~~~~~ 323 (340)
...+|++..............+..+++|++++++.++.... +.++..++..++.+ |. .....++.+|....+
T Consensus 114 ~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~-----~~~~~~~l~~l~~~~~~~-~~~~~~~~~f~~~~~ 187 (194)
T 2fvv_A 114 RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH-----KPVQASYFETLRQGYSAN-NGTPVVATTYSVSAQ 187 (194)
T ss_dssp EEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT-----CHHHHHHTCC------------------------
T ss_pred EEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC-----cHHHHHHHHHHhhccccc-CchhccCcceEEeec
Confidence 34555555432111111112245689999999998764322 23334444444333 33 366777888855544
Q ss_pred h
Q 019517 324 S 324 (340)
Q Consensus 324 ~ 324 (340)
.
T Consensus 188 ~ 188 (194)
T 2fvv_A 188 S 188 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 50
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.76 E-value=7.4e-18 Score=142.45 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=84.3
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCc----
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQ---- 244 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~---- 244 (340)
+++++++++ +++|||++| +|.|.+|||++++||++.+||+||++||||+.+....+++.........+
T Consensus 20 ~~~~~ii~~-~~~vLl~~r-------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 2pqv_A 20 VRATALIVQ-NHKLLVTKD-------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH 91 (154)
T ss_dssp EEEEECCEE-TTEEEEEEE-------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEE-CCEEEEEec-------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence 567777776 689999988 46899999999999999999999999999999987777765433222112
Q ss_pred eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHH
Q 019517 245 KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVID 296 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~ 296 (340)
...++|.+...........+++|+.+++|++++++.++++.+. ..+.++.
T Consensus 92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~--~~~~~l~ 141 (154)
T 2pqv_A 92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV--FLKTALP 141 (154)
T ss_dssp EEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST--THHHHTT
T ss_pred EEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH--HHHHHhh
Confidence 2234566655321111112356789999999999999987765 3355543
No 51
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.76 E-value=3.6e-18 Score=152.96 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=85.3
Q ss_pred eEEEEEEEe-CCceEEEEEeccCCCCC-----CCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517 169 VGVGGFVIN-DNNEVLVVQEKYCNPAF-----AGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 242 (340)
Q Consensus 169 v~V~~lv~~-~~~~VLLvqr~~~~~~~-----~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~ 242 (340)
.+|++++++ ++++|||+++. +.+.. ++.|++|||++|+||++.+||+||++||||+.+..+..++.+...++.
T Consensus 58 ~av~vl~~~~~~~~vLLvrq~-R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~ 136 (209)
T 1g0s_A 58 HAAVLLPFDPVRDEVVLIEQI-RIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG 136 (209)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-CGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred CEEEEEEEECCCCEEEEEEee-cccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence 568888888 57899999874 33332 578999999999999999999999999999999888888766555554
Q ss_pred CceEEEEEEEEEecC--CC-cccCCcCceeeEEEEeccccccCCCCC
Q 019517 243 FQKSDLFFICMLKPL--ST-EIKVDDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 243 ~~~~~~~f~~~~~~~--~~-~~~~~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
......+|++..... .+ ....+++|..++.|+|++++.++....
T Consensus 137 ~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g 183 (209)
T 1g0s_A 137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 183 (209)
T ss_dssp BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence 444556666664221 12 123466788899999999998865443
No 52
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.76 E-value=3.7e-18 Score=142.70 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=86.4
Q ss_pred cceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeec-c--C
Q 019517 166 THQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAH-N--V 241 (340)
Q Consensus 166 ~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~-~--~ 241 (340)
..+.+++++++++ +++|||++|. .|.|.+|||++++||++.+||+||++||||+.+....+++..... . .
T Consensus 16 ~~~~~~~~vi~~~~~~~vLl~~r~------~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 89 (148)
T 2azw_A 16 QTRYAAYIIVSKPENNTMVLVQAP------NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH 89 (148)
T ss_dssp EECCEEEEECEEGGGTEEEEEECT------TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred eeeeEEEEEEECCCCCeEEEEEcC------CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence 3456788888876 7899999973 379999999999999999999999999999999888777654211 1 1
Q ss_pred C---CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 242 A---FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 242 ~---~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
. ......+|.+.... ... ...+|+.+++|++++++.++..... .+.+++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~--~~~-~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 144 (148)
T 2azw_A 90 RQTAYYNPGYFYVANTWR--QLS-EPLERTNTLHWVAPEEAVRLLKRGS---HRWAVEKWL 144 (148)
T ss_dssp TTEEEEEEEEEEEEEEEE--ECS-SCC-CCSEEEEECHHHHHHHBSCHH---HHHHHHHHH
T ss_pred CCcceEEEEEEEEEEcCc--CCc-CCCCceeeEEEeeHHHHHhhhcchh---HHHHHHHHH
Confidence 1 11233455555432 222 2346778999999999998765442 466666654
No 53
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.75 E-value=1.2e-18 Score=156.20 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=104.2
Q ss_pred HHHhcCceeE----EEecCCccccchHHHHhccccccccCcccccccccccCCCCCCCCCCcceeEEEEEEEeC--CceE
Q 019517 109 HWRRMNKKGI----WLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLPGNATHQVGVGGFVIND--NNEV 182 (340)
Q Consensus 109 ~w~~~~~~~v----W~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp~~~~~~v~V~~lv~~~--~~~V 182 (340)
.|+..+++.+ |+++..+...+++ +....|..+.. +..+......++|.+++.++ +++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~~~~v~~-------------~~~~~~~~~av~v~~v~~~~~~~~~v 79 (212)
T 2dsc_A 16 KQYIISEELISEGKWVKLEKTTYMDPT---GKTRTWESVKR-------------TTRKEQTADGVAVIPVLQRTLHYECI 79 (212)
T ss_dssp CCEEEEEEEEEECSSEEEEEEEEECTT---SCEEEEEEEEE-------------TTCCTTSCSEEEEEEEEECTTSCCEE
T ss_pred CceEeeEEEEeeCCEEEEEEEEEECCC---CCEEEEEEEEe-------------eccCCCCCCEEEEEEEEeCCCCCcEE
Confidence 6888877766 9999888888776 32222222210 00000111223344444443 2589
Q ss_pred EEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCC---
Q 019517 183 LVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLST--- 259 (340)
Q Consensus 183 LLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~--- 259 (340)
||+++. +++..++.|++|||++|+||++.+||+||++||||+.+....+++.....+.......++|++.+.....
T Consensus 80 lLv~q~-R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 158 (212)
T 2dsc_A 80 VLVKQF-RPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENA 158 (212)
T ss_dssp EEEEEE-EGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGGGS
T ss_pred EEEEee-cCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccccc
Confidence 999874 3444567899999999999999999999999999999987777654444444334445556665443211
Q ss_pred --cccCCcCceeeEEEEeccccccCCC
Q 019517 260 --EIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 260 --~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
...++++|+.++.|++++++.++..
T Consensus 159 ~~~~~~~~~E~~~~~w~~~~el~~~~~ 185 (212)
T 2dsc_A 159 RPKPKPGDGEFVEVISLPKNDLLQRLD 185 (212)
T ss_dssp SCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred CCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence 3345678999999999999987643
No 54
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.75 E-value=8.6e-19 Score=143.04 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=85.2
Q ss_pred EEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEEEE
Q 019517 172 GGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLFFI 251 (340)
Q Consensus 172 ~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~f~ 251 (340)
.+++++.+++|||++|.. .+.++|.|.+|||++++||++.+||+||++||||+.+.....++...+..........+|.
T Consensus 8 ~~ii~~~~~~vLl~~r~~-~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 1mut_A 8 VGIIRNENNEIFITRRAA-DAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL 86 (129)
T ss_dssp CEECEETTTEEEEEECSS-CCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEE
T ss_pred EEEEEecCCEEEEEEeCC-CCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEE
Confidence 345567889999999863 3467899999999999999999999999999999998776665543332222222234555
Q ss_pred EEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHH
Q 019517 252 CMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDI 297 (340)
Q Consensus 252 ~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~ 297 (340)
+... .+. +..+|+.+++|++++++.+++++... +.+++.
T Consensus 87 ~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~ 125 (129)
T 1mut_A 87 VERW--EGE--PWGKEGQPGEWMSLVGLNADDFPPAN---EPVIAK 125 (129)
T ss_dssp EEEC--SSC--CCCCSSCCCEEEESSSCCTTTSCTTC---HHHHHH
T ss_pred EEcc--CCc--cCCcccceeEEeCHHHcccccCCchh---HHHHHH
Confidence 5542 222 34567889999999999998887653 445443
No 55
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=144.56 Aligned_cols=111 Identities=25% Similarity=0.288 Sum_probs=75.4
Q ss_pred EEEEEEeCC-ceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEEE
Q 019517 171 VGGFVINDN-NEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDLF 249 (340)
Q Consensus 171 V~~lv~~~~-~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~~ 249 (340)
+++++++.+ ++|||+++. ..|.|.+|||++++||++.+||+||++||||+.+.....+..+.... ..+....+
T Consensus 7 ~~~~i~~~~~~~vLl~~r~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~~ 80 (146)
T 2jvb_A 7 RGAAIFNENLSKILLVQGT-----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYKI 80 (146)
T ss_dssp EEEEEBCTTSSEEEEECCS-----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEEE
T ss_pred EEEEEEeCCCCEEEEEEEc-----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEEE
Confidence 677777765 899999875 35899999999999999999999999999999886432211111111 11222233
Q ss_pred EEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCCC
Q 019517 250 FICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQG 287 (340)
Q Consensus 250 f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~~ 287 (340)
|++..........+ +++|+.+++|++++++.++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 119 (146)
T 2jvb_A 81 FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN 119 (146)
T ss_dssp EEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred EEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence 33322121112222 367899999999999998765544
No 56
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.75 E-value=1.4e-17 Score=140.71 Aligned_cols=122 Identities=11% Similarity=0.166 Sum_probs=84.4
Q ss_pred ceeEEEEEEEeCCce----EEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC
Q 019517 167 HQVGVGGFVINDNNE----VLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA 242 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~----VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~ 242 (340)
+.++|++++.+ +++ |||++|... + ++| |.+|||++++||++.+||+||++||||+.+....+++........
T Consensus 7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~-~-~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 82 (155)
T 2b06_A 7 TILTNICLIED-LETQRVVMQYRAPENN-R-WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT 82 (155)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEC-------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred cEEEEEEEEEE-CCCCeEEEEEEECCCC-C-CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence 45667777877 445 888887632 2 556 999999999999999999999999999999888887765544321
Q ss_pred -CceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHH
Q 019517 243 -FQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICI 299 (340)
Q Consensus 243 -~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l 299 (340)
......+|.+... .+. +...|..+++|++++++.++++... .+.+++.+.
T Consensus 83 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~ 133 (155)
T 2b06_A 83 GGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMME 133 (155)
T ss_dssp SCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHH
T ss_pred CceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHh
Confidence 2223344444332 222 2346788999999999999987654 366665554
No 57
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.74 E-value=3e-18 Score=150.53 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=93.5
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEc-ceeeecCCCCHHHHHHHHHHHHhCCcceee-EEEEEEeec---cCCC
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKL-PTGFIDESEEIFKGAVREVKEETGVDTEFV-EVIAFRHAH---NVAF 243 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~l-PGG~ve~GEs~~eAAiREv~EETGi~~~~~-~~l~~~~~~---~~~~ 243 (340)
.+|++++++.+++|||++|.......+|.|.+ |||++++||++.+||+||++||||+.+..+ ..++.+... ....
T Consensus 33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 112 (190)
T 1hzt_A 33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI 112 (190)
T ss_dssp ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence 35788889888999999986555556899999 999999999999999999999999999877 555322211 1111
Q ss_pred --ceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCC---CchHHHHHHHHHHHHhc
Q 019517 244 --QKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQG---DCMFKKVIDICIARLRK 304 (340)
Q Consensus 244 --~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~---~~~~~~il~~~l~~l~~ 304 (340)
.....+|++.. .+.+.++++|+.+++|++++++.++..... ...++.+++.++++...
T Consensus 113 ~~~~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 175 (190)
T 1hzt_A 113 VENEVCPVFAART---TSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARKRL 175 (190)
T ss_dssp EEEEECCEEEEEB---CSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHHHH
T ss_pred cceEEEEEEEEec---CCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHHhh
Confidence 12224455553 245556678999999999999987632111 22456666666665443
No 58
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.74 E-value=1.4e-18 Score=161.79 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=109.9
Q ss_pred ceeecccCCCCcEEEcCCCCCCChhHHHHHHHHHH--HHHHhcCc-eeEEEecCCccccchHHHHhccc---cccccCcc
Q 019517 73 RVLDFFDDEYDGVVVDPKRLPSDPDAFASILRFSL--IHWRRMNK-KGIWLKLPLENAELVPIAVKEGF---KYHHAEPE 146 (340)
Q Consensus 73 ~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~~l--~~w~~~~~-~~vW~~l~~~~~~l~~~a~~~~f---~~h~~~~~ 146 (340)
++.+..+|-+.+.+|+..... -.....|-..| .+|--.+. +..+-++|. +...+| .|||+.
T Consensus 12 ~~~~~l~dl~~rfi~n~p~~~---~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~--------~~~~~f~~~~f~~~~-- 78 (271)
T 2a6t_A 12 TFSQVLDDLSARFILNLPAEE---QSSVERLCFQIEQAHWFYEDFIRAQNDQLPS--------LGLRVFSAKLFAHCP-- 78 (271)
T ss_dssp CTHHHHHHHHHHHTTTSCGGG---TTCHHHHHHHHHHHHHHHHHTHHHHCSSSCC--------CCHHHHHHHHHTTCH--
T ss_pred CHHHHHHHHHHHHhhcCCHHH---hccHHHHHHHHHHHHHHHHHhhhhcccCCCc--------ccHHHHHHHHhhhhh--
Confidence 455556666777777653221 11123333333 56655443 221223343 123344 688884
Q ss_pred cccccccccCCCCCCCC---CCcceeEEEEEEEeC-CceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHH
Q 019517 147 YLMLTYWIPDGPCVLPG---NATHQVGVGGFVIND-NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEE 222 (340)
Q Consensus 147 y~~l~~w~~~~~~~lp~---~~~~~v~V~~lv~~~-~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EE 222 (340)
++..|.+.....++. +.....+++++++++ +++|||++|.. .+|.|.+|||++|+||++.+||+||++||
T Consensus 79 --~l~~~~~~~~~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~----~~g~W~lPgG~ve~gEs~~eAA~REl~EE 152 (271)
T 2a6t_A 79 --LLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWK----ASSGWGFPKGKIDKDESDVDCAIREVYEE 152 (271)
T ss_dssp --HHHHC---CCHHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESS----TTCCCBCSEEECCTTCCHHHHHHHHHHHH
T ss_pred --hhhcccccchhHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeC----CCCeEECCcccCCCCcCHHHHHHHHHHHH
Confidence 566777643322221 112234567888875 48999999852 35889999999999999999999999999
Q ss_pred hCCcceeeEEEEEEeeccCCCceEEEEEEEEEecCCCcccC-CcCceeeEEEEeccccccCCCCC
Q 019517 223 TGVDTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIKV-DDLEIKGAKWMPFMEFVKQPLIQ 286 (340)
Q Consensus 223 TGi~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~Wv~leel~~~~~~~ 286 (340)
||+++..+..+..+. .....+....+|++..........+ +++|+.+++|++++++.++....
T Consensus 153 tGl~~~~l~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~ 216 (271)
T 2a6t_A 153 TGFDCSSRINPNEFI-DMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK 216 (271)
T ss_dssp HCCCCTTTCCTTCEE-EEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC---
T ss_pred hCCCceeeeeeeeec-cCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence 999987642221111 1111123345566654332332233 56899999999999999876543
No 59
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.74 E-value=1.6e-17 Score=146.19 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=84.6
Q ss_pred EEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCce---E
Q 019517 170 GVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQK---S 246 (340)
Q Consensus 170 ~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~---~ 246 (340)
.+++++.+ +++|||++|. ..|.|.+|||++++||++.+||+||++||||+.+....+++........... .
T Consensus 6 v~~~vi~~-~~~vLL~~r~-----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T 3fk9_A 6 VTNCIVVD-HDQVLLLQKP-----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE 79 (188)
T ss_dssp EEEEEEEE-TTEEEEEECT-----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeC-----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence 34555555 6899999985 4789999999999999999999999999999999887777655443322221 1
Q ss_pred EEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 247 DLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 247 ~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
.+.+++.+....+.+.. ..|..+++|++++++.++++.+. .+.+++.+++.
T Consensus 80 ~~~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~l~~~---~~~~l~~~l~~ 130 (188)
T 3fk9_A 80 WMLFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELPMAAG---DKWIFKHVLHS 130 (188)
T ss_dssp EEEEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSCCCHH---HHHHHHHHTTC
T ss_pred EEEEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCCCCHH---HHHHHHHHHcC
Confidence 13333333322333332 33446899999999999887654 35666666543
No 60
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.74 E-value=6.7e-18 Score=149.01 Aligned_cols=113 Identities=18% Similarity=0.106 Sum_probs=84.1
Q ss_pred eEEEEEEEeC-CceEEEEEeccCCCC------CCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517 169 VGVGGFVIND-NNEVLVVQEKYCNPA------FAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNV 241 (340)
Q Consensus 169 v~V~~lv~~~-~~~VLLvqr~~~~~~------~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~ 241 (340)
.+|++++++. ++++||+++. +.+. .++.|++|||++| ||++.+||+||++||||+++..+..++.....+.
T Consensus 46 ~av~v~~~~~~~~~vlLv~~~-r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~ 123 (191)
T 3o6z_A 46 NGATILLYNTKKKTVVLIRQF-RVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG 123 (191)
T ss_dssp CEEEEEEEETTTTEEEEEEEE-CHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTT
T ss_pred CEEEEEEEECCCCEEEEEEcC-CccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCC
Confidence 4678888884 6899999885 3222 6788999999999 9999999999999999999988888887666655
Q ss_pred CCceEEEEEEEEEecCCC---cccCCcCceeeEEEEeccccccCCC
Q 019517 242 AFQKSDLFFICMLKPLST---EIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~---~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
.......+|++....... .... ++|+.+++|+|++++.++..
T Consensus 124 ~~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~~ 168 (191)
T 3o6z_A 124 GVTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMIK 168 (191)
T ss_dssp TBCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHHH
T ss_pred ccCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHHH
Confidence 555566667766532110 1122 67899999999999987644
No 61
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.73 E-value=3.4e-17 Score=141.08 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=80.8
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSDL 248 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~~ 248 (340)
+.+++++++.++++||++|+ .|.|.+|||++++||++.+||+||++||||+++....+++.+.... ....
T Consensus 16 ~~~~~~ii~~~~~vLL~~r~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~ 85 (163)
T 3f13_A 16 ARRATAIIEMPDGVLVTASR------GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAHK 85 (163)
T ss_dssp EEEEEEECEETTEEEEEECC---------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEE
T ss_pred eEEEEEEEEeCCEEEEEEEC------CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEE
Confidence 44555566667899999885 4789999999999999999999999999999998888776543221 4455
Q ss_pred EEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHH
Q 019517 249 FFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 249 ~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~ 301 (340)
+|+|.. ++.+.+. +|+.+++|++ .+....++.+. .+.+++.+.+.
T Consensus 86 ~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~~---~~~il~~~~~~ 130 (163)
T 3f13_A 86 VYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFVE---GRAILRRYARL 130 (163)
T ss_dssp EEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCHH---HHHHHHHHHHH
T ss_pred EEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCHH---HHHHHHHHHHh
Confidence 566653 3455544 4899999999 44455555442 36666666554
No 62
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=151.19 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=82.8
Q ss_pred eeEEEEEEEe-CCceEEEEEeccCCCCC-------------------------------CCceEcceeeecC-CCCHHHH
Q 019517 168 QVGVGGFVIN-DNNEVLVVQEKYCNPAF-------------------------------AGLWKLPTGFIDE-SEEIFKG 214 (340)
Q Consensus 168 ~v~V~~lv~~-~~~~VLLvqr~~~~~~~-------------------------------~g~W~lPGG~ve~-GEs~~eA 214 (340)
..+|++++++ .++++||+++. +++.. ++.|++|||++|+ ||++.+|
T Consensus 36 ~~aV~vl~~~~~~~~vlLvrQ~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ea 114 (218)
T 3q91_A 36 HDSVTVLLFNSSRRSLVLVKQF-RPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEV 114 (218)
T ss_dssp CCEEEEEEEEGGGTEEEEEEEE-CHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHH
T ss_pred CCeEEEEEEECCCCEEEEEEcc-ccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHH
Confidence 4678889998 46899999874 33322 6799999999999 9999999
Q ss_pred HHHHHHHHhCCcc--eeeEEEEEEeeccCCCceEEEEEEEEEecC----CCcccCCcCceeeEEEEeccccccCCC
Q 019517 215 AVREVKEETGVDT--EFVEVIAFRHAHNVAFQKSDLFFICMLKPL----STEIKVDDLEIKGAKWMPFMEFVKQPL 284 (340)
Q Consensus 215 AiREv~EETGi~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~~~E~~~~~Wv~leel~~~~~ 284 (340)
|+||++||||+.+ ..+..++.+...++.......+|++..... .+...++++|+.++.|++++++.++..
T Consensus 115 A~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~ 190 (218)
T 3q91_A 115 ACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFAD 190 (218)
T ss_dssp HHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence 9999999999998 677777766555555555666777765321 123455678999999999999987643
No 63
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.70 E-value=5.6e-17 Score=137.41 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=87.8
Q ss_pred ceeEEEEEEEeC---CceEEEEEeccCCCCCCCceEcceeeecCCCCHH-HHHHHHHHHHhC-CcceeeEEEEEEeeccC
Q 019517 167 HQVGVGGFVIND---NNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIF-KGAVREVKEETG-VDTEFVEVIAFRHAHNV 241 (340)
Q Consensus 167 ~~v~V~~lv~~~---~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~-eAAiREv~EETG-i~~~~~~~l~~~~~~~~ 241 (340)
++..+.++|.++ +++|||++|. ..+.++|.|+||||.+++||++. +||+||++|||| +.+.....++...+...
T Consensus 18 ~~~~~~~vi~~~~~~~~~vLl~~R~-~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~ 96 (155)
T 1x51_A 18 EESSATCVLEQPGALGAQILLVQRP-NSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS 96 (155)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEECC-CCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred eEEEEEEEEEecCCCCCEEEEEECC-CCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence 445555666664 5899999986 34567899999999999999996 999999999999 88766666554333333
Q ss_pred CCceEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHH
Q 019517 242 AFQKSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIA 300 (340)
Q Consensus 242 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~ 300 (340)
.......+|.+... .+. +...|..+++|++++++.+++++.. .+.+++.+++
T Consensus 97 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~ 148 (155)
T 1x51_A 97 HIKLTYQVYGLALE--GQT--PVTTVPPGARWLTQEEFHTAAVSTA---MKKVFRVYQG 148 (155)
T ss_dssp SCEEEEEEEEEECS--SCC--CCCCCCTTEEEEEHHHHHHSCCCHH---HHHHHHHHHH
T ss_pred CccEEEEEEEEEEc--CCC--CCCCCCCccEEccHHHhhhcCCCHH---HHHHHHHHHh
Confidence 33333345555432 222 2335677899999999999887543 4666665543
No 64
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.68 E-value=3.2e-16 Score=149.21 Aligned_cols=132 Identities=20% Similarity=0.275 Sum_probs=84.2
Q ss_pred CCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEE------EEEe
Q 019517 164 NATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVI------AFRH 237 (340)
Q Consensus 164 ~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l------~~~~ 237 (340)
++...++|++++++ +++|||++|... ..+|.|.+|||++|+||++.+||+||++||||+++....++ ..+.
T Consensus 199 ~~~~~~~v~~vi~~-~~~vLL~~r~~~--~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 275 (341)
T 2qjo_A 199 YAPTFITTDAVVVQ-AGHVLMVRRQAK--PGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD 275 (341)
T ss_dssp SCCCEEEEEEEEEE-TTEEEEEECCSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEEC
T ss_pred CCCCceEEEEEEEe-CCEEEEEEecCC--CCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEe
Confidence 34456778888874 689999998632 35789999999999999999999999999999998744322 2222
Q ss_pred ec-cCCCc-eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC--CCCCCCchHHHHHHHHHHH
Q 019517 238 AH-NVAFQ-KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ--PLIQGDCMFKKVIDICIAR 301 (340)
Q Consensus 238 ~~-~~~~~-~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~--~~~~~~~~~~~il~~~l~~ 301 (340)
.. ....+ ...++|++...........+++|+.+++|++++++.++ ++.+. .+.+++.+++.
T Consensus 276 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~---~~~il~~~~~~ 340 (341)
T 2qjo_A 276 APGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYED---HFQIIQHFVSK 340 (341)
T ss_dssp CTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTT---HHHHHHHHC--
T ss_pred CCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchH---HHHHHHHHHhc
Confidence 11 11111 23456666653211111235688999999999999987 45443 26677766543
No 65
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.68 E-value=7e-16 Score=147.73 Aligned_cols=135 Identities=20% Similarity=0.287 Sum_probs=92.1
Q ss_pred CCCcceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEE------EEEE
Q 019517 163 GNATHQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEV------IAFR 236 (340)
Q Consensus 163 ~~~~~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~------l~~~ 236 (340)
.++...++|+++|+ .+++|||++|... ..+|.|.+|||++|+||++.+||+||++||||+++....+ ...+
T Consensus 203 ~~~~~~~~v~~vv~-~~~~vLL~~r~~~--~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~ 279 (352)
T 2qjt_B 203 PFKPNFVTVDALVI-VNDHILMVQRKAH--PGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF 279 (352)
T ss_dssp SSCCEEEEEEEEEE-ETTEEEEEEESSS--SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred CCCCCceEEEEEEE-ECCEEEEEEEcCC--CCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence 34455677888887 4689999998643 2578999999999999999999999999999999864321 1121
Q ss_pred eeccC-CCc-eEEEEEEEEEecCCCccc-CCcCceeeEEEEec-cccccC--CCCCCCchHHHHHHHHHHHHh
Q 019517 237 HAHNV-AFQ-KSDLFFICMLKPLSTEIK-VDDLEIKGAKWMPF-MEFVKQ--PLIQGDCMFKKVIDICIARLR 303 (340)
Q Consensus 237 ~~~~~-~~~-~~~~~f~~~~~~~~~~~~-~~~~E~~~~~Wv~l-eel~~~--~~~~~~~~~~~il~~~l~~l~ 303 (340)
..... ..+ ...+.|++........+. .+++|+.+++|+++ +++.++ .+.+. .+.+++.++++++
T Consensus 280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~---~~~il~~~~~~l~ 349 (352)
T 2qjt_B 280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLED---HYQIITILLEECG 349 (352)
T ss_dssp CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTT---HHHHHHHHHHHTC
T ss_pred cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChh---HHHHHHHHHHHhc
Confidence 11111 111 234556666532211122 24688999999999 999987 44432 3778888887663
No 66
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.66 E-value=1.3e-16 Score=143.00 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=73.9
Q ss_pred EEEEEEeCCceEEEEEeccCCC--CCCCceEc-ceeeecCCCC--H----HHHHHHHHHHHhCCcceeeEEEEEEeeccC
Q 019517 171 VGGFVINDNNEVLVVQEKYCNP--AFAGLWKL-PTGFIDESEE--I----FKGAVREVKEETGVDTEFVEVIAFRHAHNV 241 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~--~~~g~W~l-PGG~ve~GEs--~----~eAAiREv~EETGi~~~~~~~l~~~~~~~~ 241 (340)
+..+++..+++|||++|..+++ ...|.|.+ |||+||+||+ + .+||+||++||||+++....+++.......
T Consensus 70 i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~ 149 (211)
T 3e57_A 70 IPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTT 149 (211)
T ss_dssp EEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSS
T ss_pred EEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCC
Confidence 3444445578999999974332 14578998 9999999998 4 999999999999999988888887654322
Q ss_pred CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccC
Q 019517 242 AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 242 ~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
..+ ...++|.|... .+ .+.+.|..+++|++++++.++
T Consensus 150 ~~~~~~l~~~f~~~~~--~g--~~~~~E~~~~~W~~~~eL~~~ 188 (211)
T 3e57_A 150 EVSRVHLGALFLGRGK--FF--SVKEKDLFEWELIKLEELEKF 188 (211)
T ss_dssp HHHHTEEEEEEEEEEE--EE--EESCTTTCEEEEEEHHHHHHH
T ss_pred CCCeEEEEEEEEEEeC--Cc--eeCCCCeEEEEEEEHHHHHHh
Confidence 222 22345666543 22 345667789999999999886
No 67
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.64 E-value=9.7e-16 Score=148.09 Aligned_cols=119 Identities=22% Similarity=0.261 Sum_probs=85.3
Q ss_pred CCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCC-------------Cc
Q 019517 178 DNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVA-------------FQ 244 (340)
Q Consensus 178 ~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~-------------~~ 244 (340)
++.+|||++|. ..|.|.+|||++|+||++.+||+||++||||+++....+++........ ..
T Consensus 36 ~~~~vLLv~r~-----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 110 (364)
T 3fjy_A 36 DSIEVCIVHRP-----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADT 110 (364)
T ss_dssp TTEEEEEEEET-----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC--------------------
T ss_pred CceEEEEEEcC-----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCc
Confidence 34589999985 3589999999999999999999999999999999888877754432221 12
Q ss_pred eEEEEEEEEEecCC----------CcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhc
Q 019517 245 KSDLFFICMLKPLS----------TEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRK 304 (340)
Q Consensus 245 ~~~~~f~~~~~~~~----------~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~ 304 (340)
....+|++...... .....+++|+.+++|++++++.++.... ..+.+++.++++++.
T Consensus 111 ~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~r~il~~~~~~l~~ 177 (364)
T 3fjy_A 111 KHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS---TDKDTLAVFVDRVQE 177 (364)
T ss_dssp -CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH---HHHHHHHHHHHHHHT
T ss_pred eEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch---hhHHHHHHHHHHhcc
Confidence 34456666553211 1123456899999999999999876543 247788888887754
No 68
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.60 E-value=3.2e-15 Score=144.98 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=92.6
Q ss_pred eeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCCceEE
Q 019517 168 QVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDTEFVEVIAFRHAHNVAFQKSD 247 (340)
Q Consensus 168 ~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~~~~~~l~~~~~~~~~~~~~~ 247 (340)
...+++++.|.+|+|||+||. ..+.++|.|+||||.+|+| ++.+|++||++||||+.+.....++...+....+....
T Consensus 240 ~~~~~~vi~~~~g~vLL~rR~-~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~ 317 (369)
T 3fsp_A 240 VPLAVAVLADDEGRVLIRKRD-STGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQL 317 (369)
T ss_dssp EEEEEEEEECSSSEEEEEECC-SSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEE
T ss_pred EEEEEEEEEeCCCEEEEEECC-CCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEE
Confidence 444566677788999999996 4556889999999999999 99999999999999999987776665544444444444
Q ss_pred EEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHH
Q 019517 248 LFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARL 302 (340)
Q Consensus 248 ~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l 302 (340)
.+|.+.... + ..|..+++|++++++.+++++.. .+.+++.+.+.+
T Consensus 318 ~~~~~~~~~--~-----~~e~~~~~Wv~~~el~~~~l~~~---~~~il~~l~~~~ 362 (369)
T 3fsp_A 318 TVFPGRLVH--G-----GPVEEPYRLAPEDELKAYAFPVS---HQRVWREYKEWA 362 (369)
T ss_dssp EEEEEEECC--S-----SCCCTTEEEEEGGGGGGSCCCHH---HHHHHHHHHHHT
T ss_pred EEEEEEEcC--C-----CCCccccEEeeHHHhhhCCCCHH---HHHHHHHHHHHh
Confidence 555555421 1 35778899999999999887653 466776665543
No 69
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.60 E-value=1.1e-14 Score=132.75 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=89.5
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcc-eeeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLP-TGFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI 233 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lP-GG~ve~G------Es~---~eAAiREv~EETGi~~~~-----~~~l 233 (340)
.++.+++++.+|+|||++|...+..++|.|++| ||++++| |++ .+||+||++||||+.+.. +..+
T Consensus 60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l 139 (235)
T 2dho_A 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL 139 (235)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence 457888899889999999876666688999999 5999999 884 999999999999998652 3555
Q ss_pred EEEee-ccC--CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC------CCCchHHHHHHHHHHH
Q 019517 234 AFRHA-HNV--AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI------QGDCMFKKVIDICIAR 301 (340)
Q Consensus 234 ~~~~~-~~~--~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~------~~~~~~~~il~~~l~~ 301 (340)
+.+.. ... ... ....+|++.. ...+.++++|+.+++|++++++.++... .-...++.+++.++..
T Consensus 140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp~~~~i~~~~L~~ 215 (235)
T 2dho_A 140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITPWFKIIAATFLFK 215 (235)
T ss_dssp EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCHHHHHHHHHTHHH
T ss_pred EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECHhHHHHHHHHHHH
Confidence 44322 111 111 1223444443 3456677899999999999999764211 1122456666665544
No 70
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=133.70 Aligned_cols=131 Identities=13% Similarity=0.167 Sum_probs=90.7
Q ss_pred eEEEEEEEeCCceEEEEEeccCCCCCCCceEcce-eeecCC------CCH---HHHHHHHHHHHhCCccee-----eEEE
Q 019517 169 VGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPT-GFIDES------EEI---FKGAVREVKEETGVDTEF-----VEVI 233 (340)
Q Consensus 169 v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPG-G~ve~G------Es~---~eAAiREv~EETGi~~~~-----~~~l 233 (340)
.++.++++|.+|+|||+||...+..++|.|++|+ |++++| |++ .+||+||++||||+.+.. +..+
T Consensus 71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l 150 (246)
T 2pny_A 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM 150 (246)
T ss_dssp EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence 4578888998899999999766667899999995 999999 887 999999999999998652 3455
Q ss_pred EEEee-ccC--CCc--eEEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCC------CCCchHHHHHHHHHHHH
Q 019517 234 AFRHA-HNV--AFQ--KSDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLI------QGDCMFKKVIDICIARL 302 (340)
Q Consensus 234 ~~~~~-~~~--~~~--~~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~------~~~~~~~~il~~~l~~l 302 (340)
+.+.. .+. ... ....+|++.. ...+.++++|+.+++|++++++.++... .-...++.+++.++...
T Consensus 151 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp~~~~i~~~~l~~w 227 (246)
T 2pny_A 151 TIYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWELLEREARGEVKVTPWLRTIAERFLYRW 227 (246)
T ss_dssp EEEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCHHHHHHHHHTHHHH
T ss_pred EEEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECHhHHHHHHHHHHHH
Confidence 43322 111 111 1223444443 3456677899999999999999764211 11224666776666544
No 71
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.54 E-value=6.8e-15 Score=131.92 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=74.0
Q ss_pred EEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCC-CHHHHHHHHHHHHhCCcceeeE-----EEEEEeeccCCCc
Q 019517 171 VGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEFVE-----VIAFRHAHNVAFQ 244 (340)
Q Consensus 171 V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi~~~~~~-----~l~~~~~~~~~~~ 244 (340)
+.+++++.+++|||++| .+|.|+||||++|+|| ++.+||+||++||||+.+.... .++....... ..
T Consensus 47 vv~~i~~~~~~vLl~~r------~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~ 119 (212)
T 1u20_A 47 KLFDRVPIRRVLLMMMR------FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK 119 (212)
T ss_dssp EETTTEECCEEEEEEEE------TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred EEEEEEecCCEEEEEEe------CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence 44455677789999887 3689999999999999 9999999999999999987543 3443332222 34
Q ss_pred eEEEEEEEEEecCCCcc----------cCCcCceeeEEEEeccccccC
Q 019517 245 KSDLFFICMLKPLSTEI----------KVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 245 ~~~~~f~~~~~~~~~~~----------~~~~~E~~~~~Wv~leel~~~ 282 (340)
...++|+|.... +.+ ..++.|..++.|+|++++.+.
T Consensus 120 ~~~~~f~~~~~~--~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~ 165 (212)
T 1u20_A 120 CVTHFYIKELKL--EEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR 165 (212)
T ss_dssp EEEEEEEEECCH--HHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred EEEEEEEEEecC--CCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence 455666666421 211 124568889999999999764
No 72
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.51 E-value=3.6e-13 Score=126.53 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=75.8
Q ss_pred eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhCCcc------------eeeEEE---E---EEeeccCC
Q 019517 181 EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETGVDT------------EFVEVI---A---FRHAHNVA 242 (340)
Q Consensus 181 ~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETGi~~------------~~~~~l---~---~~~~~~~~ 242 (340)
+|||++|. ..|.|.+|||++++||++.+||+||++||||+.+ ....++ + +.......
T Consensus 140 ~vLl~~r~-----~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dp 214 (292)
T 1q33_A 140 QFVAIKRK-----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP 214 (292)
T ss_dssp EEEEEECT-----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCT
T ss_pred EEEEEEec-----CCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCC
Confidence 69999986 2489999999999999999999999999999983 111111 0 11111111
Q ss_pred -C----ceEEEEEEEEEec---CCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcccC
Q 019517 243 -F----QKSDLFFICMLKP---LSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKRYC 307 (340)
Q Consensus 243 -~----~~~~~~f~~~~~~---~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~y~ 307 (340)
. ....++|.+.... ........++|+.+++|++++++..+.. ++ +.+++.++++++..|.
T Consensus 215 r~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~---~h--~~il~~~~~~~~a~~~ 282 (292)
T 1q33_A 215 RNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYA---SH--SQFIKLVAEKRDAHWS 282 (292)
T ss_dssp TCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCST---TH--HHHHHHHHHHHTCCCC
T ss_pred CCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCH---hH--HHHHHHHHHHhcCccc
Confidence 1 1223444444321 1111123467899999999999987532 33 7888888887765543
No 73
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.51 E-value=4.4e-13 Score=126.14 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=110.2
Q ss_pred CcEEEcCCCCCCChhHHHHHHHHHHHHHHhcCceeEEEecCCccccchHHHHhccccccccCcccccccccccCCCCCCC
Q 019517 83 DGVVVDPKRLPSDPDAFASILRFSLIHWRRMNKKGIWLKLPLENAELVPIAVKEGFKYHHAEPEYLMLTYWIPDGPCVLP 162 (340)
Q Consensus 83 ~g~~v~~~~~~~~~~~f~~~l~~~l~~w~~~~~~~vW~~l~~~~~~l~~~a~~~~f~~h~~~~~y~~l~~w~~~~~~~lp 162 (340)
++|++.+ ...+.++=...|+..+..|+..+. ++.-..++.++....+ .+....+ + +...+
T Consensus 53 ~~v~l~~--~~~~~~~rt~~~~~~~~~~~~~g~------~~gwr~E~~~V~~~~~------~~~~~~~----e--R~~~~ 112 (300)
T 3dup_A 53 DAVLLSA--SLRTPQSRTRAVADVVDRLADEGV------VPAPRGELYRVNQSWG------EPTLMLL----D--RAVVP 112 (300)
T ss_dssp SEEEECT--TCCSHHHHHHHHHHHHHHHHHTTS------SCCCCSCEEEECSSTT------SCCCEEE----E--GGGTG
T ss_pred CEEEEec--CCCCHHHHHHHHHHHHHHHHHcCC------CCccccccEEeecCCC------CeeeEEE----E--hhhcc
Confidence 4566654 234778888999999999999873 1111111111110000 0000000 0 00111
Q ss_pred CCCcceeEEEEEEEeCCc---eEEEEEeccCCCCCCCceE-cceeeecCCCCHHHHHHHHHHHHhCCcceee---EEEEE
Q 019517 163 GNATHQVGVGGFVINDNN---EVLVVQEKYCNPAFAGLWK-LPTGFIDESEEIFKGAVREVKEETGVDTEFV---EVIAF 235 (340)
Q Consensus 163 ~~~~~~v~V~~lv~~~~~---~VLLvqr~~~~~~~~g~W~-lPGG~ve~GEs~~eAAiREv~EETGi~~~~~---~~l~~ 235 (340)
.......+|.+.+++.++ ++||.||...+..++|.|+ .|||++++||++.+||+||+.||+||.+... ..++.
T Consensus 113 ~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~ 192 (300)
T 3dup_A 113 TFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGA 192 (300)
T ss_dssp GGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEE
T ss_pred ccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccce
Confidence 122234568888888776 9999999888888999995 8999999999999999999999999987532 22222
Q ss_pred Eee-ccCCCc-eEEEEEEEEEe-cCCCcccCCcCceeeEEEEeccccccC
Q 019517 236 RHA-HNVAFQ-KSDLFFICMLK-PLSTEIKVDDLEIKGAKWMPFMEFVKQ 282 (340)
Q Consensus 236 ~~~-~~~~~~-~~~~~f~~~~~-~~~~~~~~~~~E~~~~~Wv~leel~~~ 282 (340)
... .....+ ...+.|++.+. +....+.++++|+.+++|++++|+.++
T Consensus 193 i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~ 242 (300)
T 3dup_A 193 ITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242 (300)
T ss_dssp EEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred EEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHH
Confidence 111 111111 12233333332 222344568899999999999999764
No 74
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.36 E-value=5.3e-13 Score=120.19 Aligned_cols=92 Identities=26% Similarity=0.394 Sum_probs=64.2
Q ss_pred eEEEEEeccCCCCCCCceEcceeeecCCC-CHHHHHHHHHHHHhCCccee--eEEEEEEeeccC-CCceEEEEEEEEEec
Q 019517 181 EVLVVQEKYCNPAFAGLWKLPTGFIDESE-EIFKGAVREVKEETGVDTEF--VEVIAFRHAHNV-AFQKSDLFFICMLKP 256 (340)
Q Consensus 181 ~VLLvqr~~~~~~~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi~~~~--~~~l~~~~~~~~-~~~~~~~~f~~~~~~ 256 (340)
++||+.|. ++.|++|||++|+|| ++.+||+||++||||+.+.. +..+......+. ......++|++.+..
T Consensus 66 ~~ll~~r~------~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~ 139 (217)
T 2xsq_A 66 AILMQMRF------DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL 139 (217)
T ss_dssp EEEEEEET------TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH
T ss_pred cEEEEEcc------CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc
Confidence 56666553 578999999999999 99999999999999999873 222222222222 224556677776532
Q ss_pred CCCcc----------cCCcCceeeEEEEeccccc
Q 019517 257 LSTEI----------KVDDLEIKGAKWMPFMEFV 280 (340)
Q Consensus 257 ~~~~~----------~~~~~E~~~~~Wv~leel~ 280 (340)
+.. ..++.|..++.|+|++++.
T Consensus 140 --~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~ 171 (217)
T 2xsq_A 140 --EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR 171 (217)
T ss_dssp --HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred --ccceecccccccccccCCceeeEEEEEHHHhh
Confidence 111 2235788999999999987
No 75
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.35 E-value=4.7e-12 Score=115.10 Aligned_cols=112 Identities=26% Similarity=0.316 Sum_probs=74.6
Q ss_pred eeEEEEEEEeC--Cc--eEEEEEeccCCCCCCCceEcceeeecCCCC--------------------HHHHHHHHHHHHh
Q 019517 168 QVGVGGFVIND--NN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEE--------------------IFKGAVREVKEET 223 (340)
Q Consensus 168 ~v~V~~lv~~~--~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs--------------------~~eAAiREv~EET 223 (340)
+.++.++++++ ++ +|||++|.......+|.|.||||++|+||+ +..||+||++|||
T Consensus 8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~ 87 (232)
T 3qsj_A 8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI 87 (232)
T ss_dssp EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence 45566666653 23 899999986555568999999999999987 5899999999999
Q ss_pred CCcceee------------------------------------------EEEEEEeeccCCCc-eEEEEEEEEEecCCCc
Q 019517 224 GVDTEFV------------------------------------------EVIAFRHAHNVAFQ-KSDLFFICMLKPLSTE 260 (340)
Q Consensus 224 Gi~~~~~------------------------------------------~~l~~~~~~~~~~~-~~~~~f~~~~~~~~~~ 260 (340)
||.+... ..++.......... ....||++.+. ....
T Consensus 88 Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q~~~ 166 (232)
T 3qsj_A 88 GWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-HLGE 166 (232)
T ss_dssp SCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-SCCC
T ss_pred CceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-CCCC
Confidence 9975321 11111111111112 23355665553 1111
Q ss_pred ccCCcCceeeEEEEeccccc
Q 019517 261 IKVDDLEIKGAKWMPFMEFV 280 (340)
Q Consensus 261 ~~~~~~E~~~~~Wv~leel~ 280 (340)
+..++.|+.++.|++++|+.
T Consensus 167 v~~d~~E~~~~~W~~p~eal 186 (232)
T 3qsj_A 167 PRLHGAELDAALWTPARDML 186 (232)
T ss_dssp CCCCSSSEEEEEEEEHHHHH
T ss_pred CCCCCCceEEEEEEcHHHHH
Confidence 24578999999999999995
No 76
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.24 E-value=2.9e-11 Score=114.92 Aligned_cols=115 Identities=7% Similarity=0.126 Sum_probs=83.8
Q ss_pred ceeEEEEEEEeCCceEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHh-CCcceeeEEEEEEeeccCCCce
Q 019517 167 HQVGVGGFVINDNNEVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEET-GVDTEFVEVIAFRHAHNVAFQK 245 (340)
Q Consensus 167 ~~v~V~~lv~~~~~~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EET-Gi~~~~~~~l~~~~~~~~~~~~ 245 (340)
+.+.|++++.+ +|+|||+ . ..| |.+|||.++.+ ..++|+||++||| |++++...+++.+.... .+.
T Consensus 182 p~~~vgaii~~-~g~vLL~--~-----~~G-W~LPG~~~~~~--~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~ 248 (321)
T 3rh7_A 182 GEIRLGAVLEQ-QGAVFLA--G-----NET-LSLPNCTVEGG--DPARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGR 248 (321)
T ss_dssp SCEEEEEEEES-SSCEEEB--C-----SSE-EBCCEEEESSS--CHHHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCC
T ss_pred CcceEEEEEEE-CCEEEEe--e-----CCC-ccCCcccCCCC--hhHHHHHHHHHHhcCCEEeeceEEEEEEcCC--Cce
Confidence 34767777764 6899999 2 357 99998866544 4469999999997 99999888888876543 234
Q ss_pred EEEEEEEEEecCCCcccCCcCceeeEEEEeccccccCCCCCCCchHHHHHHHHHHHHhcc
Q 019517 246 SDLFFICMLKPLSTEIKVDDLEIKGAKWMPFMEFVKQPLIQGDCMFKKVIDICIARLRKR 305 (340)
Q Consensus 246 ~~~~f~~~~~~~~~~~~~~~~E~~~~~Wv~leel~~~~~~~~~~~~~~il~~~l~~l~~~ 305 (340)
..++|.|... +++ ..+++|++++|++.+.+..+ -.+.+++.+++..+..
T Consensus 249 ~~i~f~~~~~--~g~-------~~e~~~f~~~elp~~~~~~~--~~~~~L~~y~~e~~~g 297 (321)
T 3rh7_A 249 QNIVYHALAS--DGA-------PRQGRFLRPAELAAAKFSSS--ATADIINRFVLESSIG 297 (321)
T ss_dssp EEEEEEEEEC--SSC-------CSSSEEECHHHHTTCEESSH--HHHHHHHHHHHTTSCS
T ss_pred EEEEEEEEeC--CCC-------eeeeEEECHHHCCCcccCCH--HHHHHHHHHHHHhhcC
Confidence 5678888763 222 26789999999998866544 4577887777655443
No 77
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=98.89 E-value=1.7e-09 Score=94.51 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=55.1
Q ss_pred CCCceEcceeeecCCC-CHHHHHHHHHHHHhCC-cceeeEEEEEEeeccCCCceEEEEEEEEEecCCCccc--------C
Q 019517 194 FAGLWKLPTGFIDESE-EIFKGAVREVKEETGV-DTEFVEVIAFRHAHNVAFQKSDLFFICMLKPLSTEIK--------V 263 (340)
Q Consensus 194 ~~g~W~lPGG~ve~GE-s~~eAAiREv~EETGi-~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--------~ 263 (340)
..|.|+||||+||+|| ++++|+.||+.||+|+ .+....++......+. ......+|.|.... +++. .
T Consensus 52 ~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp-~~V~LHfY~crl~~--Ge~~~lE~~A~~A 128 (214)
T 3kvh_A 52 FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP-HRVVAHLYARQLTL--EQLHAVEISAVHS 128 (214)
T ss_dssp TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECCH--HHHHHHHHHHHTS
T ss_pred eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC-CEEEEEEEEEEeeC--CccchhhhcccCC
Confidence 4689999999999999 9999999999999997 4655555544332222 34555677776531 2111 1
Q ss_pred --CcCceeeEEEEeccccc
Q 019517 264 --DDLEIKGAKWMPFMEFV 280 (340)
Q Consensus 264 --~~~E~~~~~Wv~leel~ 280 (340)
-..|.....-+|+=.+.
T Consensus 129 ~d~G~EvlGlvRVPlytl~ 147 (214)
T 3kvh_A 129 RDHGLEVLGLVRVPLYTQK 147 (214)
T ss_dssp TTBTTTEEEEEEECCCBCT
T ss_pred cccCceecceEEeeeEEec
Confidence 24677778888886654
No 78
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=98.80 E-value=1.4e-08 Score=89.65 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=46.9
Q ss_pred eEEEEEEE-eCCc--eEEEEEeccCCCCCCCceEcceeeecCCCCHHHHHHHHHHHHhC------CcceeeEEEEEE
Q 019517 169 VGVGGFVI-NDNN--EVLVVQEKYCNPAFAGLWKLPTGFIDESEEIFKGAVREVKEETG------VDTEFVEVIAFR 236 (340)
Q Consensus 169 v~V~~lv~-~~~~--~VLLvqr~~~~~~~~g~W~lPGG~ve~GEs~~eAAiREv~EETG------i~~~~~~~l~~~ 236 (340)
.+|.++++ ++.+ +|||+|+. .+.|.+|||.+|+||+..+|+.||+.||+| ...+..+.++..
T Consensus 59 ~sV~avil~~~~~~phVLLlq~~------~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w 129 (208)
T 3bho_A 59 RTVEGVLIVHEHRLPHVLLLQLG------TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW 129 (208)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE------TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred eEEEEEEEEcCCCCcEEEEEEcC------CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence 44554444 4444 79999974 358999999999999999999999999999 455555677653
Done!