Query 019518
Match_columns 340
No_of_seqs 113 out of 1133
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11055 galM galactose-1-epim 100.0 1E-73 2.3E-78 539.3 42.3 332 1-340 2-342 (342)
2 PLN00194 aldose 1-epimerase; P 100.0 3.7E-71 8.1E-76 522.4 43.3 334 3-339 4-337 (337)
3 TIGR02636 galM_Leloir galactos 100.0 8.3E-71 1.8E-75 520.0 39.8 325 5-338 1-335 (335)
4 PTZ00485 aldolase 1-epimerase; 100.0 1.4E-70 3.1E-75 519.6 41.0 330 8-340 13-371 (376)
5 KOG1604 Predicted mutarotase [ 100.0 1.2E-68 2.7E-73 481.3 34.7 335 2-340 14-352 (353)
6 cd09019 galactose_mutarotase_l 100.0 5.7E-67 1.2E-71 493.3 39.4 319 10-337 1-326 (326)
7 PRK15172 putative aldose-1-epi 100.0 5.3E-59 1.1E-63 433.7 38.1 287 7-339 9-299 (300)
8 COG2017 GalM Galactose mutarot 100.0 2.4E-54 5.2E-59 403.0 36.5 298 2-339 6-307 (308)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 7.6E-54 1.6E-58 397.0 34.4 277 18-334 1-283 (284)
10 PF01263 Aldose_epim: Aldose 1 100.0 1E-50 2.2E-55 378.5 27.2 296 9-336 1-300 (300)
11 cd09021 Aldose_epim_Ec_YphB al 100.0 2.2E-47 4.8E-52 351.9 30.3 263 20-335 2-272 (273)
12 cd09024 Aldose_epim_lacX Aldos 100.0 7.9E-46 1.7E-50 343.9 33.7 274 11-337 1-288 (288)
13 cd01081 Aldose_epim aldose 1-e 100.0 7.7E-46 1.7E-50 342.5 33.1 279 19-333 2-283 (284)
14 cd09025 Aldose_epim_Slr1438 Al 100.0 1.4E-42 3E-47 319.4 28.2 260 9-335 2-270 (271)
15 cd09020 D-hex-6-P-epi_like D-h 100.0 1.1E-33 2.3E-38 259.9 25.8 260 11-335 2-268 (269)
16 KOG1594 Uncharacterized enzyme 99.9 4.6E-23 9.9E-28 180.1 24.6 267 3-337 18-296 (305)
17 COG0676 Uncharacterized enzyme 99.9 3.6E-20 7.8E-25 164.9 18.7 234 9-309 25-264 (287)
18 cd09023 Aldose_epim_Ec_c4013 A 99.8 1E-19 2.2E-24 168.6 17.5 203 93-333 70-283 (284)
19 cd09269 deoxyribose_mutarotase 99.2 1.6E-09 3.5E-14 100.4 18.9 270 20-334 2-291 (293)
20 PF14486 DUF4432: Domain of un 99.1 1.3E-08 2.9E-13 94.8 21.8 276 7-337 3-302 (302)
21 PF14315 DUF4380: Domain of un 98.1 0.008 1.7E-07 55.5 26.4 138 9-176 5-147 (274)
22 TIGR03593 yidC_nterm membrane 94.4 1.1 2.3E-05 43.1 13.7 29 8-36 73-101 (366)
23 PF14849 YidC_periplas: YidC p 94.0 0.64 1.4E-05 42.4 10.8 27 10-36 1-27 (270)
24 PRK01318 membrane protein inse 87.0 15 0.00032 37.2 13.3 27 10-36 40-66 (521)
25 PF02929 Bgal_small_N: Beta ga 84.2 12 0.00026 34.4 10.5 30 12-46 1-30 (276)
26 PRK09525 lacZ beta-D-galactosi 57.0 3E+02 0.0065 30.5 14.6 38 9-51 749-786 (1027)
27 PRK10340 ebgA cryptic beta-D-g 52.4 3.2E+02 0.007 30.2 14.0 33 10-47 725-757 (1021)
28 PF09095 DUF1926: Domain of un 38.7 1.3E+02 0.0028 27.7 7.3 48 103-159 121-168 (278)
29 PRK01001 putative inner membra 36.3 2.7E+02 0.0059 29.6 9.6 31 6-36 223-253 (795)
30 PF07481 DUF1521: Domain of Un 33.7 2.3E+02 0.005 23.9 7.1 71 69-155 1-77 (171)
31 COG3175 COX11 Cytochrome oxida 29.0 1.1E+02 0.0024 26.3 4.6 44 265-308 84-138 (195)
32 PF06045 Rhamnogal_lyase: Rham 25.6 4.6E+02 0.01 23.0 13.7 32 10-46 17-48 (203)
33 PF12439 GDE_N: Glycogen debra 22.7 5.4E+02 0.012 22.7 9.7 84 76-179 48-134 (223)
34 PF05660 DUF807: Coxiella burn 20.9 83 0.0018 25.1 2.2 31 47-81 15-45 (142)
No 1
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=100.00 E-value=1e-73 Score=539.31 Aligned_cols=332 Identities=36% Similarity=0.687 Sum_probs=300.4
Q ss_pred CCCCCCccEEEEEEe-CCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEE
Q 019518 1 MADHTLKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFS 79 (340)
Q Consensus 1 ~~~~~~~~~~~~L~n-~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~ 79 (340)
+|.+|..+..|+|+| ++++|+|+++||+|++|+++|++|+++|||+||+++++|..+ +.++|++|+||||||++|+|.
T Consensus 2 ~~~~g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~-~~~~Ga~iGr~anRI~~g~f~ 80 (342)
T PRK11055 2 LAPDGQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQ-AAYLGASVGRYANRIANSRFT 80 (342)
T ss_pred cCCCCCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhC-CCccCceeCCcCCcccCCEEE
Confidence 467899999999998 579999999999999999999999889999999999999987 789999999999999999999
Q ss_pred ECCEEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEe
Q 019518 80 LDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAV 159 (340)
Q Consensus 80 ~~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~ 159 (340)
++|++|+|+.|+++|+|||+..||+.+.|+++... .++|+|++.++++.+||||++.++|+|+|+++++|+|+|+++
T Consensus 81 ~~G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~ 157 (342)
T PRK11055 81 LDGETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRAT 157 (342)
T ss_pred ECCEEEEcccCCCCcccCCCCcccCCcEEEEEEcc---CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEE
Confidence 99999999999999999999999999999998776 679999999988889999999999999998667999999995
Q ss_pred eCCCceeeeecccceeecCCC-CCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCC----
Q 019518 160 PENKPTPISLAQHTYWNLAGH-HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP---- 234 (340)
Q Consensus 160 n~~~~~p~~~g~HpyF~l~~~-~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~---- 234 (340)
++++||+|+|+||||||++. ...++.+|.|+++|+.++++|+++||||++.++++++|||+.++.|++.+..+.
T Consensus 158 -~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~ 236 (342)
T PRK11055 158 -VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQK 236 (342)
T ss_pred -cCCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccccchhccc
Confidence 69999999999999999874 235799999999999999999999999999999999999999999988653211
Q ss_pred -CCcceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCC
Q 019518 235 -GLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAI 313 (340)
Q Consensus 235 -~~~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~ 313 (340)
. ++||+|+|+. .. +...++|+|.++.++++|+|++++|+|||||+++++...++.|++|.++.+||||||++|||+
T Consensus 237 ~~-g~D~~fvl~~-~~-~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~ 313 (342)
T PRK11055 237 VK-GYDHAFLLQA-KG-DGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSP 313 (342)
T ss_pred CC-CcceEEEECC-CC-cccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcc
Confidence 2 7999999863 11 112468999999999999999999999999999886544667888999999999999999999
Q ss_pred CCCCCC--CeEECCCCEEEEEEEEEEEeC
Q 019518 314 NQPNFP--SVVVRPGESYQHTMLFEFSVE 340 (340)
Q Consensus 314 n~~~~~--~~~L~pge~~~~~~~y~f~~~ 340 (340)
|+++|+ .++|+|||+|++++.|+|++|
T Consensus 314 n~~~f~~~~~~L~pg~~y~~~t~y~f~~~ 342 (342)
T PRK11055 314 NHPEWPQPDCILKPGEEYRSLTEYQFIAE 342 (342)
T ss_pred cccCCCCCCeEECCCCEEEEEEEEEEEeC
Confidence 999996 899999999999999999986
No 2
>PLN00194 aldose 1-epimerase; Provisional
Probab=100.00 E-value=3.7e-71 Score=522.45 Aligned_cols=334 Identities=75% Similarity=1.245 Sum_probs=301.4
Q ss_pred CCCCccEEEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECC
Q 019518 3 DHTLKPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDG 82 (340)
Q Consensus 3 ~~~~~~~~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G 82 (340)
..|..+.+|+|+|+.++|+|+++||+|++|++++++|+++|+|+|+++.++|..+ +.++|++|+||||||++|+|.++|
T Consensus 4 ~~~~~~~~~~L~n~~l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~-~~~~Ga~lgp~anRI~~g~~~~~G 82 (337)
T PLN00194 4 AAEEKPGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKND-SPYFGAIVGRVANRIKGAKFTLNG 82 (337)
T ss_pred cCCCeeEEEEEEeCCEEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhC-CCccCCeeCCCCCceeCCEEEECC
Confidence 3588999999999999999999999999999998889889999999999989876 778999999999999999999999
Q ss_pred EEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCC
Q 019518 83 VEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPEN 162 (340)
Q Consensus 83 ~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~ 162 (340)
++|+|+.|+++|+|||+..||..+.|+|+..++++.++|+|++.++++..+|||+++++|+|+|+.++.|+|+|+++|.+
T Consensus 83 ~~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~~ 162 (337)
T PLN00194 83 VTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLN 162 (337)
T ss_pred EEEEeccCCCCcccCCCCcccCceEEeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEECCCCeEEEEEEEEECC
Confidence 99999999999999999999988999998876333479999999887788999999999999997458999999998768
Q ss_pred CceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeE
Q 019518 163 KPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNY 242 (340)
Q Consensus 163 ~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f 242 (340)
++|||++|+||||||++..++++.+|.|++++++++++|+++||||++.+++++++||+.++.|++.+..... ++||+|
T Consensus 163 ~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~~-g~Dh~f 241 (337)
T PLN00194 163 KATPVNLAQHTYWNLAGHNSGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPK-GYDHNY 241 (337)
T ss_pred CCeEEEccccceEEcCCCCCCCcCCeEEEEecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhccccC-CcceEE
Confidence 9999999999999999865568999999999999999999999999999999999999999999886644334 799999
Q ss_pred EeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCCCCCCeE
Q 019518 243 VLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVV 322 (340)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~~~~~~~ 322 (340)
++.. ...++++++|+|.++.++++|+|++++|+|||||++++++.++++|..+.++.+||||||.+|||+|+++++.++
T Consensus 242 ~l~~-~~~~~~~~~a~l~~~~sg~~l~v~t~~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~~~~~~~~ 320 (337)
T PLN00194 242 VLDG-EEKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQPNFPSVV 320 (337)
T ss_pred EECC-CCcccceeeEEEEcCCCCCEEEEEeCCCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccCCCCCCeE
Confidence 9863 112344668999999999999999999999999999886656667788888999999999999999999889999
Q ss_pred ECCCCEEEEEEEEEEEe
Q 019518 323 VRPGESYQHTMLFEFSV 339 (340)
Q Consensus 323 L~pge~~~~~~~y~f~~ 339 (340)
|+|||+|+.+++|+|++
T Consensus 321 L~pge~~~~~t~y~f~~ 337 (337)
T PLN00194 321 VNPGEKYKHTMLFEFSA 337 (337)
T ss_pred ECCCCEEEEEEEEEEeC
Confidence 99999999999999974
No 3
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=100.00 E-value=8.3e-71 Score=520.01 Aligned_cols=325 Identities=38% Similarity=0.734 Sum_probs=291.5
Q ss_pred CCccEEEEEEe-CCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCE
Q 019518 5 TLKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGV 83 (340)
Q Consensus 5 ~~~~~~~~L~n-~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~ 83 (340)
|..+..|+|+| ++++|+|+++||+|++|+++|++ +.+|||+||++.++|..+ +.++|++|+||||||++|+|+++|+
T Consensus 1 ~~~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~-~~~~vvlg~~~~~~y~~~-~~~~Ga~igp~anRI~~g~f~~~G~ 78 (335)
T TIGR02636 1 GQPAQLITLTNNNGMTISFMDIGATWLSCQVPLAG-ELREVLLGFASMEEYYKQ-DAYLGATVGRYANRIANGSFEIDGE 78 (335)
T ss_pred CCeeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCC-CccceEECCCCHHHHhhC-CCccCCCcCCCCceecCCEEEECCE
Confidence 56788999998 57999999999999999999854 668999999999999987 7899999999999999999999999
Q ss_pred EEEccCCCCCCccCCCCCCCCccceEEEE-EecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCC
Q 019518 84 EYTLPINKPPNSLHGGFKGFDKVVWEVAE-YKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPEN 162 (340)
Q Consensus 84 ~y~l~~n~~~~~lHG~~~g~~~~~w~v~~-~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~ 162 (340)
+|+|+.|+++|+|||+..||+.+.|+++. .. .++|+|++.++++.+||||++.++|+|+|++++.|+|+|+++ ++
T Consensus 79 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~---~~~v~l~~~~~~~~~gyPg~l~~~vtY~L~~~~~L~i~~~a~-~d 154 (335)
T TIGR02636 79 TYQLSINQGGNCLHGGPEGFDKRRWNIEELQE---EVQVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELTIEYEAT-TD 154 (335)
T ss_pred EEEeccCCCCcccCCCCccccccEEeEeeecC---CCEEEEEEECCCcCCCCCeEEEEEEEEEECCCCEEEEEEEEE-EC
Confidence 99999999999999999999999999987 55 679999999988889999999999999996578999999996 79
Q ss_pred CceeeeecccceeecCCC-CCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCC-----CC
Q 019518 163 KPTPISLAQHTYWNLAGH-HSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP-----GL 236 (340)
Q Consensus 163 ~~~p~~~g~HpyF~l~~~-~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~-----~~ 236 (340)
++|||++|+||||||++. .+.++++|.|+++|++++++|+++||||++++++++++||+.++.|++.+.... .
T Consensus 155 ~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~~- 233 (335)
T TIGR02636 155 KATPFNLTNHVYFNLDGADAGSDVLSHELQLNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQQQLAK- 233 (335)
T ss_pred CceEEeccccceEEcCCCCCCCChhceEEEEECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccccccccCC-
Confidence 999999999999999985 345799999999999999999999999999999999999999999988764321 2
Q ss_pred cceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCC
Q 019518 237 GYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQP 316 (340)
Q Consensus 237 ~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~ 316 (340)
++||+|+++. ...++ +.+|+|.++.++++|+|++++|++||||++.++...+++|+.|.++.+||||||.+||++|++
T Consensus 234 g~D~~f~l~~-~~~~~-~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~~n~~ 311 (335)
T TIGR02636 234 GYDHAFLLNG-ERLDG-KPAAILTSPDEDLSLEVFTTQPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDSPNHP 311 (335)
T ss_pred CcceEEEECC-CCCCC-ceeEEEEcCCCCcEEEEecCCCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCccccc
Confidence 6999999863 11111 467999999999999999999999999999886545667788889999999999999999999
Q ss_pred CCCCe--EECCCCEEEEEEEEEEE
Q 019518 317 NFPSV--VVRPGESYQHTMLFEFS 338 (340)
Q Consensus 317 ~~~~~--~L~pge~~~~~~~y~f~ 338 (340)
+|+.+ +|+|||+|+.++.|+|+
T Consensus 312 ~~~~~~~~L~pge~~~~~t~y~f~ 335 (335)
T TIGR02636 312 EWGDISCILSPGQEYQHQTRYQFI 335 (335)
T ss_pred CCCCCceEECCCCEEEEEEEEEEC
Confidence 99865 59999999999999994
No 4
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=100.00 E-value=1.4e-70 Score=519.56 Aligned_cols=330 Identities=32% Similarity=0.585 Sum_probs=290.9
Q ss_pred cEEEEEEeCCEEEEEEcCCceEEEEEEeC-CCCceeceEeCCC-CchhhhcCCCCcccceeecCCCcccCCeEEECCEEE
Q 019518 8 PEVFELNNGSMQVKITNYGAIITSLSVPD-KHGNWADVVLGFD-SVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEY 85 (340)
Q Consensus 8 ~~~~~L~n~~~~~~i~~~Ga~i~~~~~~~-~~G~~~~vl~g~~-~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y 85 (340)
...|+|+|++++|+|+++||+|+++++++ .+|+++||++||+ ++++|..+ +.++|++|+||||||++|+|.++|++|
T Consensus 13 ~~~~~L~N~~~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~-~~y~Ga~iGr~AnRI~~G~f~ldG~~Y 91 (376)
T PTZ00485 13 DKLVWLETDRLKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYAD-PDYMGATVGRCAGRVAGGVFTLDGVKY 91 (376)
T ss_pred CcEEEEEeCCEEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhC-CCccCcEeCCCCCeEECCEEEECCEEE
Confidence 46899999889999999999999999976 3498899999997 69999988 899999999999999999999999999
Q ss_pred EccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEe--CCCeEEEE---EEEee
Q 019518 86 TLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLT--SSTTMRLD---MEAVP 160 (340)
Q Consensus 86 ~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~--~~~~L~i~---~~~~n 160 (340)
+|+.|++.|+|||+..||+++.|++......+..+|+|++.++++.+|||+++.++|+|+|+ +++.|+|+ ++++|
T Consensus 92 qL~~Neg~n~LHGG~~gf~~~~W~v~~~~~~~~~~V~f~~~~~dg~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~~n 171 (376)
T PTZ00485 92 YTQKNRGENTCHCGDDAYHKKHWGMKLIETANVIGVRFNYTSPHMENGFPGELVSKVTYSIERSKPNVLKTIYDSYIPET 171 (376)
T ss_pred EccCCCCCcccCCCCCccceeeeeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEecCCCCEEEEEEEEEeccc
Confidence 99999999999999999999999986543222459999999988899999999999999996 25889999 55556
Q ss_pred C-CCceeeeecccceeecCCCC------------CCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCcccccc
Q 019518 161 E-NKPTPISLAQHTYWNLAGHH------------SGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG 227 (340)
Q Consensus 161 ~-~~~~p~~~g~HpyF~l~~~~------------~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~ 227 (340)
+ +++||+|+|+|+||||++.+ .+++.+|.|+++|+.++++|+++||||+++++++++|||++++.|+
T Consensus 172 ~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~~de~~IPTG~i~~v~~t~fDfr~~~~ig 251 (376)
T PTZ00485 172 SPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAEADRMAIPTGEFLSVEGTGLDFRQGRVIG 251 (376)
T ss_pred cCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEEeCcccCccCceeccCCCCccCcCCcccc
Confidence 6 89999999999999998742 2369999999999999999999999999999999999999999998
Q ss_pred ccccCC------CCCcceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCC-ccCCCCceeCCce
Q 019518 228 ASINEV------PGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNG-VVGKGGAVYGKHS 300 (340)
Q Consensus 228 ~~l~~~------~~~~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~-~~~~~~~~~~~~~ 300 (340)
+.+... .+ ++||+|+|+. ......+++|+|.++.+|++|+|+|++|+|||||+++++. ..++.|+.|.++.
T Consensus 252 ~~~~~~~~~~~~~~-G~Dh~fvl~~-~~~~~~~~~a~l~~p~sg~~l~v~T~~P~~qiYT~n~l~~~~~~~~g~~~~~~~ 329 (376)
T PTZ00485 252 DCIDDVALLDRDPC-GYDHPLAIDG-WEKGKLMLHAEAKSPVTNICMKVYSTFPCMWVYTANNKPLPASGGPGQRYARWT 329 (376)
T ss_pred hhhhhhhhhcccCC-CCCcceEECC-CCCccccEEEEEEcCCCCCEEEEEECCCEEEEECCCCCCccccCCCCcCcCCCC
Confidence 876411 13 7999999963 1111235789999999999999999999999999998865 2456778888999
Q ss_pred eEEEccCCCCCCCCC-CCCCCeEECCCCE-EEEEEEEEEEeC
Q 019518 301 GVCLETQGFPNAINQ-PNFPSVVVRPGES-YQHTMLFEFSVE 340 (340)
Q Consensus 301 ~iciEP~~~~da~n~-~~~~~~~L~pge~-~~~~~~y~f~~~ 340 (340)
+||||||.+|||+|+ ++|+.++|+|||+ ++.++.|+|++|
T Consensus 330 giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~~~ 371 (376)
T PTZ00485 330 GMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEFTVE 371 (376)
T ss_pred EEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEEEee
Confidence 999999999999999 8999999999999 999999999986
No 5
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-68 Score=481.29 Aligned_cols=335 Identities=53% Similarity=0.902 Sum_probs=310.4
Q ss_pred CCCCCccEEEEEEeC-CEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEE
Q 019518 2 ADHTLKPEVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSL 80 (340)
Q Consensus 2 ~~~~~~~~~~~L~n~-~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~ 80 (340)
.+.+..+..|+|.|+ +|+|+|+++||+|+++.++|++|+..||++||++.+.|......|+|++++|+||||.+|.|.+
T Consensus 14 ~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~F~l 93 (353)
T KOG1604|consen 14 TDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGKFSL 93 (353)
T ss_pred ccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecceehhhhhhcccceEEE
Confidence 456788999999996 5999999999999999999999999999999999999998547899999999999999999999
Q ss_pred CCEEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEE-EEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEe
Q 019518 81 DGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSI-TFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAV 159 (340)
Q Consensus 81 ~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v-~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~ 159 (340)
+|+.|+|..|+++|++||+..||+++.|+|..++ .+++ +|+..++++.+|||+++.++++|+|..++.|.+.+.++
T Consensus 94 dgk~y~lt~N~g~n~lHgg~~gf~~~~w~v~~~~---~~~~i~f~~~s~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A~ 170 (353)
T KOG1604|consen 94 DGKPYKLTVNNGKNTLHGGIKGFDKVIWEVVKHQ---PDGVIVFSHLSPDGDEGFPGDLKVTVTYTLNVANRLLIMMEAT 170 (353)
T ss_pred CCceEEecccCCCccccCCcccccceEEEEEEec---CCCEEEEEEECCCCCCCCCccEEEEEEEEEccCCeeeeeehhh
Confidence 9999999999999999999999999999999998 5454 99999988999999999999999999779999999996
Q ss_pred eCCCceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCC--CCc
Q 019518 160 PENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVP--GLG 237 (340)
Q Consensus 160 n~~~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~--~~~ 237 (340)
..++++|+||++|.||||.+..+++|.+|.|+|.+++..++|..+||||++.+++++.|||+.++.|++.+.+-. . +
T Consensus 171 ~~~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~~~~i~-g 249 (353)
T KOG1604|consen 171 ALDKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQFECIV-G 249 (353)
T ss_pred ccCCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeecccccccccccc-C
Confidence 449999999999999999999888999999999999999999999999999999999999999999999876654 4 8
Q ss_pred ceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCCC
Q 019518 238 YDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPN 317 (340)
Q Consensus 238 ~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~~ 317 (340)
+|++|+++........++++++.++.|+|.|+|++++|.+|+||.+.+++.+++.|..|.++.++|+|+|.+|||+|++.
T Consensus 250 ~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~TnqPgvqfYTgn~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~~ 329 (353)
T KOG1604|consen 250 YDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTNQPGVQFYTGNFLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHPN 329 (353)
T ss_pred CCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeCCCcEEEEeccccccccCCCceEeeccceEEeecccCccccccCC
Confidence 99999987522223557899999999999999999999999999999988889999999999999999999999999998
Q ss_pred CCCeEECCCCEEEEEEEEEEEeC
Q 019518 318 FPSVVVRPGESYQHTMLFEFSVE 340 (340)
Q Consensus 318 ~~~~~L~pge~~~~~~~y~f~~~ 340 (340)
++.++|+|||.|.+++.|+|++.
T Consensus 330 fp~v~l~pGE~Y~h~~~y~Fsv~ 352 (353)
T KOG1604|consen 330 FPSVILRPGETYTHETVYKFSVV 352 (353)
T ss_pred CCceEecCCCeeeeEEEEEEecc
Confidence 99999999999999999999874
No 6
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=5.7e-67 Score=493.27 Aligned_cols=319 Identities=55% Similarity=1.022 Sum_probs=284.8
Q ss_pred EEEEEeC-CEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEcc
Q 019518 10 VFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLP 88 (340)
Q Consensus 10 ~~~L~n~-~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~ 88 (340)
+|+|+|+ +++|+|+++||+|.+|++++++|+++|+|+++++.+.|... +.++|++|+||||||++|+|.++|++|+|+
T Consensus 1 ~~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~g~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 1 LYTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKN-SPYFGATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred CEEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhC-CCccCCcccCcCCeecCCEEEECCEEEEcc
Confidence 4789998 99999999999999999998778888999999999999887 799999999999999999999999999999
Q ss_pred CCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCceeee
Q 019518 89 INKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPIS 168 (340)
Q Consensus 89 ~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~p~~ 168 (340)
.|+++|+|||+..||..+.|++...+ +++|+|++.+++...+|||+++++|+|+|++++.|+|+|+++| +++|||+
T Consensus 80 ~Ne~~~~LHGg~~G~~~~~w~~~~~~---~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~-~~~~p~~ 155 (326)
T cd09019 80 ANEGPNHLHGGPKGFDKRVWDVEEVE---ENSVTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATT-DKPTPVN 155 (326)
T ss_pred CCCCCcccCCCCccccCcEEeEEecc---CCEEEEEEECCcccCCCCeEEEEEEEEEECCCCEEEEEEEEEe-CCCeEec
Confidence 99999999999999988899999877 7899999998877899999999999999984389999999986 7999999
Q ss_pred ecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccC------CCCCcceeeE
Q 019518 169 LAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE------VPGLGYDHNY 242 (340)
Q Consensus 169 ~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~------~~~~~~D~~f 242 (340)
+|+||||||++..+.++++|.|+++++.++++|+++||||++.+++++.+||+.++.|+ .+.. ... ++||||
T Consensus 156 ~g~HpyFnl~~~~~~~~~~~~L~~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~-~~~~~~~~~~~~~-~~D~~f 233 (326)
T cd09019 156 LTNHSYFNLAGEGSGDILDHELQINADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIG-RIDLDDEQLKLGG-GYDHNF 233 (326)
T ss_pred ccceeeEecCCCCCCCccceEEEEecCcEEeeCCCCCcCCCceecCCCCccccCccCcc-ccccchhhcccCC-CcceEE
Confidence 99999999998655689999999999999999999999999999998999999988876 1111 122 799999
Q ss_pred EeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCCCCCCeE
Q 019518 243 VLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVV 322 (340)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~~~~~~~ 322 (340)
++.. .. ......|+|.++.++++|+|++++|++||||++.++.....+|+.+.++.+||||||++|||+|++++++++
T Consensus 234 ~l~~-~~-~~~~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~~g~~~ 311 (326)
T cd09019 234 VLDK-GG-GKLRPAARLTSPESGRKLEVYTTQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPNFPSII 311 (326)
T ss_pred EECC-CC-CccceeEEEEcCCCCcEEEEecCCCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccCCCCeE
Confidence 9763 11 012468999999999999999999999999998776544456777888999999999999999997789999
Q ss_pred ECCCCEEEEEEEEEE
Q 019518 323 VRPGESYQHTMLFEF 337 (340)
Q Consensus 323 L~pge~~~~~~~y~f 337 (340)
|+|||+++.+++|+|
T Consensus 312 L~pge~~~~~~~y~f 326 (326)
T cd09019 312 LRPGETYRHTTVYRF 326 (326)
T ss_pred ECCCCEEEEEEEEEC
Confidence 999999999999987
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=5.3e-59 Score=433.75 Aligned_cols=287 Identities=23% Similarity=0.405 Sum_probs=252.0
Q ss_pred ccEEEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEE
Q 019518 7 KPEVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYT 86 (340)
Q Consensus 7 ~~~~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~ 86 (340)
...+++|+|+.++|+|+++||+|.+|++ .| ++++++++. +.| . +.+.|++|+||||||++|+|.++|+.|+
T Consensus 9 ~~~~~~l~~~~~~v~i~~~Ga~i~~l~~---~~--~~vv~~~~~-~~~--~-~~~~g~~L~P~anRI~~g~f~~~G~~y~ 79 (300)
T PRK15172 9 SGQTISLAAGDYQATIVTVGAGLAELTF---QG--RHLVIPHKP-EEM--P-LAHLGKVLIPWPNRIANGCYRYQGQEYQ 79 (300)
T ss_pred CcCEEEEeCCCEEEEEecCCcEEEEEEE---CC--EEEEecCCc-ccc--C-ccccccEecccCCeecCCEEEECCEEEE
Confidence 5568999999999999999999999998 45 389999864 445 3 5678999999999999999999999999
Q ss_pred ccCCC--CCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CC
Q 019518 87 LPINK--PPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NK 163 (340)
Q Consensus 87 l~~n~--~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~ 163 (340)
|+.|+ ++|+|||++ +.+.|+|.+.. +++++|++.+++ ..+|||+++++++|+|+++++|+|+++++|. ++
T Consensus 80 L~~N~~~~~~~lHG~~---~~~~W~v~~~~---~~~v~l~~~~~~-~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~ 152 (300)
T PRK15172 80 LPINEHVSKAAIHGLL---AWRDWQISELT---ATSVTLTAFLPP-SYGYPFMLASQVIYSLDAATGLSVEIASQNIGDV 152 (300)
T ss_pred CCCCCCCCCcccCCCc---cCceEEEEEec---CCEEEEEEEcCC-CCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCC
Confidence 99998 479999997 79999998877 678999998765 5789999999999999744799999999996 99
Q ss_pred ceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEE
Q 019518 164 PTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYV 243 (340)
Q Consensus 164 ~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~ 243 (340)
+||+++|||||||+++ +++.+|.|+++++++|++|++.|||| ..+++++.+||+.++.|++. ++|++|+
T Consensus 153 ~~P~~~g~HpYFnl~~---~~~~~~~L~~~a~~~~~~d~~~iPtg-~~~~~~~~~df~~~~~l~~~-------~~D~~f~ 221 (300)
T PRK15172 153 PAPYGVGIHPYLTCNL---TSVDEYLLQLPANQVLAVDEHANPTT-LHHVDELDLDFSQAKKIAAT-------KIDHTFK 221 (300)
T ss_pred ceeeEEecCceEecCC---CChhceEEEEeCCeEEecCCCcCCCc-cccCCCCCcCCCCCeECCCC-------CccCEEE
Confidence 9999999999999986 46889999999999999999999998 56888889999999988875 8999999
Q ss_pred eCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCC-CCCCCCCCCCCeE
Q 019518 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGF-PNAINQPNFPSVV 322 (340)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~-~da~n~~~~~~~~ 322 (340)
+.. + ...++|.++.++++|++.+++|++||||++.+ ++.+||||||+. +||+|.. +++++
T Consensus 222 ~~~-----~-~~~~~l~~~~~g~~l~~~~~~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~~-~g~~~ 282 (300)
T PRK15172 222 TAN-----D-LWEVRITHPQQALSVSLCSDQPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNSG-IDLLL 282 (300)
T ss_pred cCC-----C-ceEEEEEeCCCCeEEEEEcCCCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCCC-CCCEE
Confidence 542 1 24789999999999999999999999999743 257999999975 5999974 68999
Q ss_pred ECCCCEEEEEEEEEEEe
Q 019518 323 VRPGESYQHTMLFEFSV 339 (340)
Q Consensus 323 L~pge~~~~~~~y~f~~ 339 (340)
|+|||+++.+++++..+
T Consensus 283 L~pge~~~~~~~i~~~~ 299 (300)
T PRK15172 283 LEPGKTHRLFFNIGGQR 299 (300)
T ss_pred ECCCCEEEEEEEEEEEc
Confidence 99999998887777553
No 8
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-54 Score=403.00 Aligned_cols=298 Identities=38% Similarity=0.719 Sum_probs=245.2
Q ss_pred CCCCCccEEEEEEeC-CEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEE
Q 019518 2 ADHTLKPEVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSL 80 (340)
Q Consensus 2 ~~~~~~~~~~~L~n~-~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~ 80 (340)
+..|..+..+++.|+ .+.++|.++||.|++|++ +|+ ++++++++.+.|... +.+.|++|+||||||++|+|.+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~---~~~--~v~l~~~~~~~~~~~-~~~~ga~l~p~anRI~~g~f~~ 79 (308)
T COG2017 6 APDGQPVRLLTLGNGGGMVVTVPDWGATLTSLRV---NGR--NLLLGFDDAESYPAT-RGYGGAILGPYANRISNGRFTL 79 (308)
T ss_pred ccCCCceEEEEEeCCCeEEEEEccCCcEEEEEEE---CCc--eEEeecCCHHHhccc-cccccceecCccCcccCCEEEE
Confidence 356888999999996 677777799999999999 564 999999888888876 6678899999999999999999
Q ss_pred CCEEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEee
Q 019518 81 DGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVP 160 (340)
Q Consensus 81 ~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n 160 (340)
+|++|+|+.|+++|++||++ +...|+|...+.++.. +|++..+++..+|||+++++|+|+|.+ +.|+|+|+++|
T Consensus 80 ~G~~y~L~~N~~~~~lHG~~---~~~~~~v~~~~~~~~~--~~~l~~~~~~~gyP~~l~~~vtY~L~~-~~L~v~~~~~n 153 (308)
T COG2017 80 DGKTYQLPPNEGGNALHGGA---RDFDWQVWEAEEDDNA--EFSLVLRDGEDGYPGNLEATVTYTLNE-DGLTVTYEVTN 153 (308)
T ss_pred CCEEEEeCCCCCCccccCCc---cCCCeeEEEEEeccCC--EEEEEecccCCCCCceEEEEEEEEEcC-CCEEEEEEEEe
Confidence 99999999999999999999 5667777766543233 777777777788999999999999985 55999999999
Q ss_pred C-CCceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCC-CCCCCccccccCCCCCCCCccccccccccCCCCCcc
Q 019518 161 E-NKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQ-NTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGY 238 (340)
Q Consensus 161 ~-~~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~-~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~ 238 (340)
. +++||||+|+||||||++..+ .+|.+...++..+++++ ..+|+|.+. .. +..+...+.. .. .+
T Consensus 154 ~~~~~~p~~~g~HpYFnl~~~~~---~~~~~~~~~~~~l~~~~~~~ip~~~~~-~~--------~~~~~~~~~~-~~-~~ 219 (308)
T COG2017 154 DGDEPTPFNLGNHPYFNLPGDGR---LEHILAIASDYYLPVDDEEPIPTGDIK-RE--------PKPLEDDFAA-DD-PY 219 (308)
T ss_pred CCCCcceecccccceEecCCCCC---cccEEEecCCceEEcccCCCCCccccc-cc--------cccccccccc-cc-cc
Confidence 7 889999999999999998532 67888888888888887 788998642 11 1111111111 11 36
Q ss_pred eeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCC-CCCCCCCCC
Q 019518 239 DHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQG-FPNAINQPN 317 (340)
Q Consensus 239 D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~-~~da~n~~~ 317 (340)
|++|.+.. . .++++.|+|.++.++++|+|++++|++||||.+.++ .+++||||||. +|||+|+++
T Consensus 220 d~~f~~~~-~--~~~~~~a~l~~~~~~~~l~v~t~~p~~~~yt~~~~~-----------~~~~~clEp~~~~pdA~n~~~ 285 (308)
T COG2017 220 DHAFLLNG-A--RGLKPAARLYDPDSGLSLEVETDEPFVQLYTGNFLA-----------GRDGLCLEPQSGLPDAFNHPG 285 (308)
T ss_pred ccceeecc-c--cCCcceEEEEcCCCCeEEEEEeCCCeEEEEeCCCCC-----------cCCeEEeeeccCCCCcCCCCC
Confidence 99999763 1 114579999999999999999999999999998642 26899999985 999999999
Q ss_pred CCCeEECCCCEEEEEEEEEEEe
Q 019518 318 FPSVVVRPGESYQHTMLFEFSV 339 (340)
Q Consensus 318 ~~~~~L~pge~~~~~~~y~f~~ 339 (340)
++...|+|||+++..++|+|..
T Consensus 286 ~~~~~L~pGe~~~~~~~~~~~~ 307 (308)
T COG2017 286 FGLIVLEPGETYSAETRFRFES 307 (308)
T ss_pred cccceeCCCCEEEEEEEEEEec
Confidence 9888899999999999999975
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=7.6e-54 Score=397.03 Aligned_cols=277 Identities=29% Similarity=0.524 Sum_probs=236.6
Q ss_pred EEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEccCCCC--CCc
Q 019518 18 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKP--PNS 95 (340)
Q Consensus 18 ~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~~n~~--~~~ 95 (340)
.+|+|.++||+|++|++ +| +|+|+++++.+ + . +.++|++||||||||++|+|.++|++|+|++|++ +|+
T Consensus 1 ~~v~i~~~Ga~l~~~~~---~g--~~il~~~~~~~-~--~-~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~ 71 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV---GG--RDLVEPYPADE-V--P-PGAAGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNA 71 (284)
T ss_pred CEEEEEecCcEEEEEEE---CC--EEEEecCCCcc-C--C-ccccccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCC
Confidence 37889999999999998 56 49999998765 3 3 5788999999999999999999999999999984 799
Q ss_pred cCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeeeecccce
Q 019518 96 LHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTY 174 (340)
Q Consensus 96 lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p~~~g~Hpy 174 (340)
+||++ +.+.|++++.+ .++|+|++.+. ...+|||+++++++|+|+ ++.|+|+++++|. +++|||++|+|||
T Consensus 72 ~HG~~---~~~~w~v~~~~---~~~v~l~l~~~-~~~~yP~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~Hpy 143 (284)
T cd09022 72 IHGLV---RWADWQLVEHT---DSSVTLRTRIP-PQPGYPFTLELTVTYELD-DDGLTVTLTATNVGDEPAPFGVGFHPY 143 (284)
T ss_pred CcCCe---ecceEEEeecc---CCeEEEEEEeC-CccCCCceEEEEEEEEEc-CCcEEEEEEEEeCCCCCeEeeeEecce
Confidence 99998 89999998876 67899999875 468999999999999998 5789999999997 8999999999999
Q ss_pred eecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEEeCCCcccCCce
Q 019518 175 WNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLK 254 (340)
Q Consensus 175 F~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~ 254 (340)
||+++. ++.+|.|++++++++++|++++|||+ .++.++.+||+.++.|+.. ++|++|++.. .. ....
T Consensus 144 F~l~~~---~~~~~~L~~~a~~~~~~d~~~lptg~-~~~~~~~~df~~~~~l~~~-------~~D~~f~~~~-~~-~~~~ 210 (284)
T cd09022 144 LSAGGA---PLDECTLTLPADTWLPVDERLLPTGT-EPVAGTPYDFRTGRRLGGT-------ALDTAFTDLT-RD-ADGR 210 (284)
T ss_pred EecCCC---CcccEEEEEECceEEecCCccCCCcC-cCCCCCCccCcCCccccCc-------cccccccccc-cC-CCCc
Confidence 999862 47899999999999999999999998 4677788999988888775 8999999542 11 1113
Q ss_pred eEEEEEeCCCCcEEEEEeCC--CEEEEEcCCCCCCccCCCCceeCCceeEEEccCC-CCCCCCCCCCCCeEECCCCEEEE
Q 019518 255 HAAKLKEPSTSRVLNLWTNA--PGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQG-FPNAINQPNFPSVVVRPGESYQH 331 (340)
Q Consensus 255 ~~~~l~~~~~~~~l~v~~~~--p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~-~~da~n~~~~~~~~L~pge~~~~ 331 (340)
..|+|.++.+ +.|+|.+++ |++||||++.++. +.++++||||||. +|||+|.. .++++|+|||+++.
T Consensus 211 ~~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~~--------~~~~~~iclEP~~~~~da~n~~-~~~~~L~pge~~~~ 280 (284)
T cd09022 211 ARARLTGPDG-RGVELWADESFPWVQVFTADTLPP--------PGRRRGLAVEPMTCPPNAFNSG-TDLIVLAPGETHTA 280 (284)
T ss_pred EEEEEECCCC-CEEEEEECCCCCEEEEECCCCCCC--------CCCCCEEEEccCCCCCCcCcCC-CCcEEECCCCEEEE
Confidence 5789999887 999999875 6999999975421 1246899999995 58999984 58999999999888
Q ss_pred EEE
Q 019518 332 TML 334 (340)
Q Consensus 332 ~~~ 334 (340)
+++
T Consensus 281 ~~~ 283 (284)
T cd09022 281 SWG 283 (284)
T ss_pred EEe
Confidence 664
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=1e-50 Score=378.53 Aligned_cols=296 Identities=36% Similarity=0.617 Sum_probs=254.5
Q ss_pred EEEEEEeC-CEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEc
Q 019518 9 EVFELNNG-SMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTL 87 (340)
Q Consensus 9 ~~~~L~n~-~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l 87 (340)
++|+|+|+ +++|+|.++||+|.+|+.++ ++ +|+||++++.+.|... + ++|++|+|+||||++|+|.++|+.|+|
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~-~~--~~~l~~~~~~~~~~~~-~-~~~~~l~p~~~Ri~~g~~~~~g~~~~l 75 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKG-NG--REVLWQPDPADAYWSN-S-FGGPILFPWPNRIRNGRFTFDGKPYCL 75 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETT-TT--EESB-B-STHHHHHHS-T-CTTCEECSCSSEEGGGEEEETTEEEEB
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECC-CC--eEEecCCCChHHhccc-c-cceeeeecccceEECCEEEECCEEEEe
Confidence 47999997 99999999999999999965 33 5999999988899987 6 889999999999999999999999999
Q ss_pred cCCC-CCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEe-CCCCCCCCeeEEEEEEEEEeCCCe-EEEEEEEeeCCCc
Q 019518 88 PINK-PPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRS-RDGEEGYPGDVSVMATYTLTSSTT-MRLDMEAVPENKP 164 (340)
Q Consensus 88 ~~n~-~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~-~~~~~~yP~~~~~~v~y~L~~~~~-L~i~~~~~n~~~~ 164 (340)
+.|+ .++++||++ +.+.|+|++.+. .++++|++.. .++.++|||+|+++++|+|. +++ |+|+++++|..++
T Consensus 76 ~~~~~~~~~~HG~~---~~~~w~v~~~~~--~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~-~~~~L~i~~~v~n~~~~ 149 (300)
T PF01263_consen 76 PWNGPYPNPIHGFA---RNKPWEVEEQSE--DDSVSFTLVSDPDGEEGYPFDFRLRITYTLD-ENGKLTITYEVTNDGKP 149 (300)
T ss_dssp SSSBTTTBEETBSG---GGSB-EEEEEEE--TTEEEEEEEEEETTHHHSSSEEEEEEEEEEE-TTEEEEEEEEEEESSSE
T ss_pred eeccCCCcCCCCCc---ccccEEEEEecc--cceEEEEEEecCccceeeccceeeEEEEEEC-CCCeEEEEEEEEecCcc
Confidence 9999 899999999 899999999982 2788888887 45557899999999999998 577 9999999985599
Q ss_pred eeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEEe
Q 019518 165 TPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVL 244 (340)
Q Consensus 165 ~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~l 244 (340)
|||++|+|||||+++. ++.++.+++++...++++++++|||++.+++++.+||+.+..+...+. .+|++|.+
T Consensus 150 ~p~~~g~HpyF~l~~~---~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~-----~~D~~f~~ 221 (300)
T PF01263_consen 150 MPFNLGFHPYFNLPGE---DIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIP-----GLDHCFVL 221 (300)
T ss_dssp EEEBEEEEEEEETTCT---SGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCT-----CEEEEEEE
T ss_pred EEeeccccceEEcCCc---ceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeeccccc-----ccceEEEc
Confidence 9999999999999974 678999999999999999999999999999988899998888776411 59999996
Q ss_pred CCCcccCCceeEEEEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCCCCCCCCCCCCCCeEEC
Q 019518 245 DCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVR 324 (340)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~~~da~n~~~~~~~~L~ 324 (340)
.. . ...++++.++.+++.|++.+++|++|||+++... .+.....+|+||+.++++.+....+++.|+
T Consensus 222 ~~-~----~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 288 (300)
T PF01263_consen 222 DP-P----GRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP--------KYICIEPIAIEPDFVPDEANNPGKGLIVLA 288 (300)
T ss_dssp SS-S----SEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS--------TEETTCEEECEEESECECCCECCHEGEEEE
T ss_pred CC-C----ccEEEEeecccceEEEEecCCCCcEEEECCCCcc--------cccCCcccccCCCeeecccccCCCCCEEEC
Confidence 52 0 2467888888888999988899999999997421 133467899999888888887766789999
Q ss_pred CCCEEEEEEEEE
Q 019518 325 PGESYQHTMLFE 336 (340)
Q Consensus 325 pge~~~~~~~y~ 336 (340)
|||+++.+++|+
T Consensus 289 pGe~~~~~~~~~ 300 (300)
T PF01263_consen 289 PGESYSFSTRYT 300 (300)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCEEEEEEEEC
Confidence 999999999885
No 11
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.2e-47 Score=351.89 Aligned_cols=263 Identities=22% Similarity=0.313 Sum_probs=217.2
Q ss_pred EEEE-cCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEccCCC--CCCcc
Q 019518 20 VKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINK--PPNSL 96 (340)
Q Consensus 20 ~~i~-~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~~n~--~~~~l 96 (340)
++++ .+||.|++|+. +|...++|+..+ .+.. ....+.+++||||||||++|+|.++|+.|+|++|+ +++++
T Consensus 2 ~~~v~~~Ga~l~sl~~---~~~~~~~l~~~~-~~~~--~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~ 75 (273)
T cd09021 2 LVLAPELGGSIAALTS---RGDPTPLLRPAD-PDAA--DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPL 75 (273)
T ss_pred ceeCCCCCceEEEEEe---CCCcceeeecCC-cccc--CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCc
Confidence 4555 79999999998 342359999543 3221 21233349999999999999999999999999998 57999
Q ss_pred CCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeeeeccccee
Q 019518 97 HGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTYW 175 (340)
Q Consensus 97 HG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p~~~g~HpyF 175 (340)
|||+ +.+.|+|++.. +++|+|++...+.. +||+|+++++|+|. ++.|+|+++++|. +++|||++|+||||
T Consensus 76 HG~a---r~~~w~v~~~~---~~~v~l~l~~~~~~--~P~~~~~~~~y~L~-~~~L~i~~~~~N~~~~~~~~~~g~H~YF 146 (273)
T cd09021 76 HGDG---WRRPWQVVAAS---ADSAELQLDHEADD--PPWAYRAEQRFHLA-GDGLSITLSVTNRGDRPMPAGLGFHPYF 146 (273)
T ss_pred ccch---hcCceEEEecc---CCeEEEEEecCCCC--CCEeEEEEEEEEEc-CCCEEEEEEEEECCCCCceeeeecCccE
Confidence 9998 89999998876 67899999876532 39999999999997 5899999999997 99999999999999
Q ss_pred ecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEEeCCCcccCCcee
Q 019518 176 NLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKH 255 (340)
Q Consensus 176 ~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~~ 255 (340)
++++ ++.|++++..++.+|++.+|+|...... .+||+....+.+. .+|++|... ..
T Consensus 147 ~~~~-------~~~l~v~~~~~~~~d~~~lp~~~~~~~~--~~df~~~~~l~~~-------~~D~~f~~~--------~~ 202 (273)
T cd09021 147 PRTP-------DTRLQADADGVWLEDEDHLPTGLRPHPP--DWDFSQPRPLPDR-------WIDNCFTGW--------DG 202 (273)
T ss_pred ecCC-------CCEEEEecceEEecCCCcCCCcccCCCc--chhhcCCCcCCcc-------cccccccCC--------Cc
Confidence 9986 7999999999999999999998754433 3788877777664 899999832 13
Q ss_pred EEEEEeCCCCcEEEEEeCC--CEEEEEcCCCCCCccCCCCceeCCceeEEEccC-CCCCCCCCCCC-CCeEECCCCEEEE
Q 019518 256 AAKLKEPSTSRVLNLWTNA--PGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNF-PSVVVRPGESYQH 331 (340)
Q Consensus 256 ~~~l~~~~~~~~l~v~~~~--p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~-~~~da~n~~~~-~~~~L~pge~~~~ 331 (340)
.+.+.++.++++|+|+++. |++||||+++ ++||||||| ++|||+|+++. ++++|+|||+++.
T Consensus 203 ~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~~--------------~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~ 268 (273)
T cd09021 203 AALIWPPERGLALTIEADAPFSHLVVYRPPG--------------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSL 268 (273)
T ss_pred ceEEecCCCCcEEEEecCCCCCEEEEEcCCC--------------CCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEE
Confidence 5788888889999999876 9999999962 579999998 68999987654 5789999999998
Q ss_pred EEEE
Q 019518 332 TMLF 335 (340)
Q Consensus 332 ~~~y 335 (340)
++++
T Consensus 269 ~~~i 272 (273)
T cd09021 269 SMRI 272 (273)
T ss_pred EEEE
Confidence 8765
No 12
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=7.9e-46 Score=343.88 Aligned_cols=274 Identities=21% Similarity=0.303 Sum_probs=218.0
Q ss_pred EEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEccCC
Q 019518 11 FELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPIN 90 (340)
Q Consensus 11 ~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~~n 90 (340)
|+|+|+.++|+|..+||.|++|++++ +|+ |+|+..+ ...|.. .+++|+||+|||++|+|.++|+.|+|+
T Consensus 1 ~~l~n~~~~a~v~~~Ga~l~s~~~~~-~g~--e~l~~~~-~~~~~~-----~~p~l~P~~gri~~g~~~~~g~~~~l~-- 69 (288)
T cd09024 1 ITLENEFLTVTISEHGAELTSIKDKK-TGR--EYLWQGD-PAYWGR-----HAPILFPIVGRLKDDTYTIDGKTYPMP-- 69 (288)
T ss_pred CEEECCcEEEEEeccCcEEEEEEeCC-CCC--EEEeCCC-hHHcCC-----CCCEEEeeccCCCCCeEEECCEEeecc--
Confidence 57999999999999999999999954 364 9998553 322321 248999999999999999999999998
Q ss_pred CCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCC-CCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeee
Q 019518 91 KPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDG-EEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPIS 168 (340)
Q Consensus 91 ~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~-~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p~~ 168 (340)
+||++ +.+.|+|.+.. .++|+|++.+.+. .++|||+|+++++|+|. +++|+|+++++|. +++|||+
T Consensus 70 -----~HGf~---r~~~w~v~~~~---~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~ 137 (288)
T cd09024 70 -----QHGFA---RDMEFEVVEQS---DDSVTFELTDNEETLKVYPFDFELRVTYTLE-GNTLKVTYEVKNPDDKTMPFS 137 (288)
T ss_pred -----CCCCc---ccCceEEEEcc---CCEEEEEEccCcchhhcCCeEEEEEEEEEEe-CCEEEEEEEEEcCCCCceEEE
Confidence 69998 78899998877 6899999987753 58999999999999998 6899999999997 8999999
Q ss_pred ecccceeecCCCCCCCccCcEEEEeC---CeEEeeCCCC-CCCccccccCCCCCCCCccccccccccCCCCCcc-eeeEE
Q 019518 169 LAQHTYWNLAGHHSGNILDHSIQIWG---SHITPVDQNT-VPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGY-DHNYV 243 (340)
Q Consensus 169 ~g~HpyF~l~~~~~~~i~~~~l~~~a---~~~~~~d~~~-lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~-D~~f~ 243 (340)
+|+||||++++..++++++|.|++++ ..++.+|+++ +|++.. ++. ++....++... .+ |++|+
T Consensus 138 ~g~HpYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~~-------~~~~~~~~ 205 (288)
T cd09024 138 IGGHPAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKK-PLL----LNEGTLPLTHD-------LFDDDALI 205 (288)
T ss_pred EeCCceEECCCCCCCcccceEEEECCcccceEEecCCccccccccc-ccc----CCCCeecCCHH-------HhcCCEEE
Confidence 99999999998656678999999999 5788888877 777642 221 12222222221 34 57777
Q ss_pred eCCCcccCCceeEEEEEeCCCCcEEEEEeC-CCEEEEEcCCCCCCccCCCCceeCCceeEEEccC-CCCCCCCCCC----
Q 019518 244 LDCGEEKSGLKHAAKLKEPSTSRVLNLWTN-APGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPN---- 317 (340)
Q Consensus 244 l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~-~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~-~~~da~n~~~---- 317 (340)
+.. . . ...++|.++..++.|+|..+ +|+++|||+.. ..+||||||| ++|||+|...
T Consensus 206 ~~~-~--~--~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~-------------~~~~iciEP~t~~~da~~~~~~~~~ 267 (288)
T cd09024 206 FDN-L--K--SREVTLKSKKTGHGVTVDFDDFPYLGIWSKPN-------------GAPFVCIEPWYGLADSVGFDGDLED 267 (288)
T ss_pred EcC-C--C--ccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCC-------------CCCEEEEcCCCCCCCcCCCCccccc
Confidence 552 1 1 24789998876778887764 89999999851 1579999998 6899998632
Q ss_pred -CCCeEECCCCEEEEEEEEEE
Q 019518 318 -FPSVVVRPGESYQHTMLFEF 337 (340)
Q Consensus 318 -~~~~~L~pge~~~~~~~y~f 337 (340)
.+++.|+|||+++..++++|
T Consensus 268 ~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 268 KEGINKLEPGESFEASYSITI 288 (288)
T ss_pred cCCCEEeCCCCEEEEEEEEEC
Confidence 37899999999988777664
No 13
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=7.7e-46 Score=342.50 Aligned_cols=279 Identities=29% Similarity=0.482 Sum_probs=230.7
Q ss_pred EEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEccCCCCCCccCC
Q 019518 19 QVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHG 98 (340)
Q Consensus 19 ~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~~n~~~~~lHG 98 (340)
+|+|..+||.|.+|+++ | .+|+||+++....|......+.|++|+||+|||.+|.|.++|+.|++..|.+++++||
T Consensus 2 ~~~i~~~Ga~i~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG 77 (284)
T cd01081 2 VAVIAPRGANIISLKVK---G-DVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHG 77 (284)
T ss_pred EEEEeCcCcEEEEEEcC---C-CceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccC
Confidence 68889999999999984 3 2499999877766644324667799999999999999999999999988888899999
Q ss_pred CCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeeeecccceeec
Q 019518 99 GFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPISLAQHTYWNL 177 (340)
Q Consensus 99 ~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p~~~g~HpyF~l 177 (340)
++ +.+.|+++..+. ++++|+|++...+...+|||+|+++++|+|. +++|+|+++++|. +++|||++|+||||++
T Consensus 78 ~~---~~~~w~v~~~~~-~~~~v~l~~~~~~~~~~~P~~~~l~~ty~L~-~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~ 152 (284)
T cd01081 78 FV---RNLPWRVVATDE-EEASVTLSYDLNDGPGGYPFPLELTVTYTLD-ADTLTITFTVTNLGDEPMPFGLGWHPYFGL 152 (284)
T ss_pred Ce---ecCcEEEEEecc-CCcEEEEEEEeCCCCCCCCEEEEEEEEEEEe-CCeEEEEEEEEeCCCCCcceeeecCceEec
Confidence 98 899999987653 2468999998876444899999999999998 5899999999997 8999999999999999
Q ss_pred CCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEEeCCCcccCCceeEE
Q 019518 178 AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAA 257 (340)
Q Consensus 178 ~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~l~~~~~~~~~~~~~ 257 (340)
++.. +++++|+++++.++++|+..+|+|+..+.. .+||+....+... .+|++|++.. .. . ....+
T Consensus 153 ~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~D~~~~~~~-~~-~-~~~~~ 217 (284)
T cd01081 153 PGVA---IEDLRLRVPASKVLPLDDLLPPTGELEVPG--EEDFRLGRPLGGG-------ELDDCFLLLG-ND-A-GTAEA 217 (284)
T ss_pred CCCc---ccceEEEecCCEEEecCCccCCCCccCCcc--cccccCCcCcCCc-------ccccccccCc-CC-C-CeeEE
Confidence 9731 789999999988999999999998765443 4677766666543 7999998542 10 1 23589
Q ss_pred EEEeCCCCcEEEEEeCCCEEEEEcCCCCCCccCCCCceeCCceeEEEccCC-CCCCCCCCCCCCeEEC-CCCEEEEEE
Q 019518 258 KLKEPSTSRVLNLWTNAPGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQG-FPNAINQPNFPSVVVR-PGESYQHTM 333 (340)
Q Consensus 258 ~l~~~~~~~~l~v~~~~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~~-~~da~n~~~~~~~~L~-pge~~~~~~ 333 (340)
+|.++.+++.|++.++.|++|||+++. ....+||||||. .|||.+....++++|+ |||+.+.++
T Consensus 218 ~l~~~~~~~~l~~~~~~~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 218 RLEDPDSRISVEFETGWPFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EEECCCCeEEEEEeCCCCEEEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 999999999999998889999999962 125799999985 6999766566899999 999887764
No 14
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.4e-42 Score=319.37 Aligned_cols=260 Identities=21% Similarity=0.324 Sum_probs=206.5
Q ss_pred EEEEEEeCC--EEEEEE-cCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCccc-ceeecCCCcccCCeEEECCEE
Q 019518 9 EVFELNNGS--MQVKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVE 84 (340)
Q Consensus 9 ~~~~L~n~~--~~~~i~-~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G-~~l~p~anRi~~g~~~~~G~~ 84 (340)
..++|+++. ++++|+ .+||.|.+|+. +| +|+|+ .++...+....+...| ++|+||+|||.+|.|.++|+.
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~---~g--~~~l~-~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~ 75 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV---QG--RELLY-LDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQE 75 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec---CC--EEEEe-cCChHHhccccccCCCCcEEECccCCCCCCeEEECCEE
Confidence 468888866 999999 79999999987 56 49998 4444434333133344 899999999999999999999
Q ss_pred EEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-C
Q 019518 85 YTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-N 162 (340)
Q Consensus 85 y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~-~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~ 162 (340)
|+|+ +|||+ +.+.|++.+.. +..+|+|++.+++ ..++|||+|+++++|+|. ++.|+|+++++|. +
T Consensus 76 ~~lp-------~HGf~---r~~~W~v~~~~--~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~ 142 (271)
T cd09025 76 YTLK-------QHGFA---RDLPWEVELLG--DGAGLTLTLRDNEATRAVYPFDFELELTYRLA-GNTLEIAQRVHNLGD 142 (271)
T ss_pred Eecc-------Ccccc---cCCCEEEEecC--CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEe-CCEEEEEEEEEECCC
Confidence 9998 69998 78999998754 2568999998765 457999999999999998 5899999999997 9
Q ss_pred CceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeE
Q 019518 163 KPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNY 242 (340)
Q Consensus 163 ~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f 242 (340)
++|||++|+||||++++ ++++.|++++..++..+++.++ +.. .+..+... .+|++|
T Consensus 143 ~~~p~~~g~HpYF~~~~-----~~~~~l~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~-------~~D~~y 198 (271)
T cd09025 143 QPMPFSFGFHPYFAVPD-----KAKLSLDLPPTRCFDQKTDEEA-----NTP-------GQFDETEE-------GVDLLF 198 (271)
T ss_pred CcEEEEEecCceeeCCc-----hhccEEEcCHHHHhhhccCCcc-----CCc-------cccccccc-------ccchhh
Confidence 99999999999999986 4689999888777765543322 111 11111111 799999
Q ss_pred EeCCCcccCCceeEEEEEeCCCCcEEEEEeC--CCEEEEEcCCCCCCccCCCCceeCCceeEEEccC-CCCCCCCCCCCC
Q 019518 243 VLDCGEEKSGLKHAAKLKEPSTSRVLNLWTN--APGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQPNFP 319 (340)
Q Consensus 243 ~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~--~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~-~~~da~n~~~~~ 319 (340)
. .. ..++|.++..+++|.|..+ ++++|||+|.. ..||||||| +++||+|... +
T Consensus 199 ~-~~--------~~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~~--------------~~~vCvEp~t~~~nA~n~~~-~ 254 (271)
T cd09025 199 R-PL--------GPASLTDGARGLKITLDHDEPFSNLVVWTDKG--------------KDFVCLEPWTGPRNALNTGE-R 254 (271)
T ss_pred c-cC--------CceEEEecCCCEEEEEecCCCcceEEEecCCC--------------CcEEEEecCCCCccccCcCC-c
Confidence 8 42 1688999888899999876 47999999952 579999997 7899998764 8
Q ss_pred CeEECCCCEEEEEEEE
Q 019518 320 SVVVRPGESYQHTMLF 335 (340)
Q Consensus 320 ~~~L~pge~~~~~~~y 335 (340)
+++|+|||+++.++++
T Consensus 255 ~~~L~PGe~~~~~~~i 270 (271)
T cd09025 255 LLLLPPGETEEASVRI 270 (271)
T ss_pred cEEECCCCEEEEEEEE
Confidence 9999999998887654
No 15
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.1e-33 Score=259.86 Aligned_cols=260 Identities=19% Similarity=0.278 Sum_probs=183.8
Q ss_pred EEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCccc-ceeecCCCcccCCeEEECCEEEEccC
Q 019518 11 FELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG-CIVGRVANRIKDGKFSLDGVEYTLPI 89 (340)
Q Consensus 11 ~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G-~~l~p~anRi~~g~~~~~G~~y~l~~ 89 (340)
++|+|++.+|+|..+||.|++|+.. |. +++|| .++...|....+...| ++||||+||+.+| |
T Consensus 2 i~i~~~~~~a~i~~~Ga~l~s~~~~---~~-~~~L~-~s~~~~~~~~~~irgGiPvlfP~~g~~~~~--------~---- 64 (269)
T cd09020 2 IVLDHPGASAEIALQGAQVLSWKPK---GG-QDLLW-LSPQAPFDGGKAIRGGIPVCWPWFGPHGPN--------A---- 64 (269)
T ss_pred EEEeCCCceEEEECCCcEEEEEeCC---CC-ceeEE-ECCccccCCCCcccCCCeEeeeccCCCCCC--------C----
Confidence 6789999999999999999999983 32 48998 3445556544233334 8999999999987 2
Q ss_pred CCCCCccCCCCCCCCccceEEEEEecC-CCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCcee
Q 019518 90 NKPPNSLHGGFKGFDKVVWEVAEYKKG-ENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTP 166 (340)
Q Consensus 90 n~~~~~lHG~~~g~~~~~w~v~~~~~~-~~~~v~l~~~~~~-~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p 166 (340)
++++|||+ |.+.|+|.+.+.+ +..+++|++...+ ..++|||+|+++++|+|. +++|+++++++|. +++||
T Consensus 65 ---~~~~HGfa---R~~~W~l~~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~-~~~L~~~l~v~N~g~~~~p 137 (269)
T cd09020 65 ---DLPAHGFA---RTRLWELLEVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLG-FDTLELELTVTNTGDKPFS 137 (269)
T ss_pred ---CCCcceee---ecCceEEeeeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEc-CCcEEEEEEEECCCCCCeE
Confidence 35589999 8999999987633 3455566655433 357999999999999997 6899999999998 99999
Q ss_pred eeecccceeecCCCCCCCccCcEEEEeCC-eEEeeCCCCCCCccccccCCCCCCCCccccccccccCCCCCcceeeEEeC
Q 019518 167 ISLAQHTYWNLAGHHSGNILDHSIQIWGS-HITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD 245 (340)
Q Consensus 167 ~~~g~HpyF~l~~~~~~~i~~~~l~~~a~-~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~~~~~~D~~f~l~ 245 (340)
|++|+||||++++ +.++.|+..+. .++ |+ ++ +.........+.| . . .+|+.|. +
T Consensus 138 ~~~g~HpYf~v~d-----~~~~~v~gl~~~~y~--d~--~~-~~~~~~~~~~~~~------~-------~-~~Drvy~-~ 192 (269)
T cd09020 138 FTAALHTYFRVSD-----IEQVRVEGLEGATYL--DK--LT-DQREKVQGGAVTF------D-------G-EVDRVYL-N 192 (269)
T ss_pred ehhccCeeEecCC-----ccccEEeCCCCCceE--Ec--CC-CccccccCCceEE------C-------C-ccceEEe-C
Confidence 9999999999986 45677776555 444 21 11 1111111111111 1 1 7999998 5
Q ss_pred CCcccCCceeEEEEEeCCCCcEEEEEeC-CCEEEEEcCCCCCCc-cCCCCceeCCceeEEEccCCCCCCCCCCCCCCeEE
Q 019518 246 CGEEKSGLKHAAKLKEPSTSRVLNLWTN-APGMQFYTGNYVNGV-VGKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVV 323 (340)
Q Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~-~p~~~i~t~~~~~~~-~~~~~~~~~~~~~iciEP~~~~da~n~~~~~~~~L 323 (340)
. ...++|.++..+++|+|..+ .+.+|||+|..-... -++.+ ...-..||||||.... +.+.|
T Consensus 193 ~-------~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~-~~~~~~fvCvEp~~~~--------~~~~L 256 (269)
T cd09020 193 T-------PAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFP-DDGYRRMVCVEAANVA--------DPVTL 256 (269)
T ss_pred C-------CCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCC-ccccceEEEECeeecC--------CCEEE
Confidence 3 12578888888999999875 689999998531110 00001 0012579999996421 45799
Q ss_pred CCCCEEEEEEEE
Q 019518 324 RPGESYQHTMLF 335 (340)
Q Consensus 324 ~pge~~~~~~~y 335 (340)
+|||+++...++
T Consensus 257 ~pG~~~~~~~~i 268 (269)
T cd09020 257 APGESHTLSQTI 268 (269)
T ss_pred CCCCCEEEEEEE
Confidence 999999988765
No 16
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=4.6e-23 Score=180.09 Aligned_cols=267 Identities=16% Similarity=0.252 Sum_probs=184.0
Q ss_pred CCCCccEEEEEEe-CCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCccc--ceeecCCCcccCCeEE
Q 019518 3 DHTLKPEVFELNN-GSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG--CIVGRVANRIKDGKFS 79 (340)
Q Consensus 3 ~~~~~~~~~~L~n-~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G--~~l~p~anRi~~g~~~ 79 (340)
.+.....++.|.+ .+.+++|.-|||.++||+.. +|+ ++|+ ..+.+.|... .+.+| |++||--|
T Consensus 18 k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~--~ge--ElLf-~S~kA~f~pp-KpIRGGIP~~FPQFG-------- 83 (305)
T KOG1594|consen 18 KGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNE--NGE--ELLF-VSTKAIFKPP-KPIRGGIPICFPQFG-------- 83 (305)
T ss_pred cccCCCceEEEeCCCCCeEEEEEeccEEEEeecC--CCc--eeEE-echhhhcCCC-CcccCCcceEeeccC--------
Confidence 3455677899998 68999999999999999984 454 7776 4566667765 67777 56666432
Q ss_pred ECCEEEEccCCCCCCccCCCCCCCCccceEEEEEecC-C---CCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEE
Q 019518 80 LDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG-E---NPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRL 154 (340)
Q Consensus 80 ~~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~-~---~~~v~l~~~~~~-~~~~yP~~~~~~v~y~L~~~~~L~i 154 (340)
|-+..+.|||+ |.+.|.++..... . +..|.|.+.+.+ ....||++|++.++..|. ++.|+.
T Consensus 84 ----------~~g~l~qHGFa---Rn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~-~g~Lt~ 149 (305)
T KOG1594|consen 84 ----------NFGSLPQHGFA---RNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLG-DGELTL 149 (305)
T ss_pred ----------CCCcccccccc---cceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEc-CCceEE
Confidence 12334589999 9999999986543 2 378999998765 578999999999999997 789999
Q ss_pred EEEEeeC-CCceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCccccccccccCC
Q 019518 155 DMEAVPE-NKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEV 233 (340)
Q Consensus 155 ~~~~~n~-~~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~~~l~~~l~~~ 233 (340)
+.+|+|+ ++|+-|++.+|+||.+++ |...+ +..-+-+....++. .+-.|.+.+..-. ++
T Consensus 150 ~~rV~Ntd~KpFsF~~alHtYf~vsd-----isevr--veGL~tldylD~~~----------~~~~~tE~~davT-F~-- 209 (305)
T KOG1594|consen 150 TSRVRNTDSKPFSFSFALHTYFRVSD-----ISEVR--VEGLETLDYLDNLK----------NRERFTEQRDAVT-FN-- 209 (305)
T ss_pred EEEeecCCCCceEEEeEeeeeEeecc-----cceEE--Eecccccccccccc----------chhhccccCceEe-ec--
Confidence 9999998 999999999999999997 33333 33222221111111 0111222211111 11
Q ss_pred CCCcceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEe-CCCEEEEEcCCCCCC-ccCCCC-ceeCCceeEEEccCCCC
Q 019518 234 PGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWT-NAPGMQFYTGNYVNG-VVGKGG-AVYGKHSGVCLETQGFP 310 (340)
Q Consensus 234 ~~~~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~-~~p~~~i~t~~~~~~-~~~~~~-~~~~~~~~iciEP~~~~ 310 (340)
+ .+|..|. +. + ....|.+..++++|.+.. +.|..|||+|..-.. .-.+.| ..| ..++|||+-...
T Consensus 210 -~-e~DrvYl-~t-p------~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y--~~mlCVe~a~v~ 277 (305)
T KOG1594|consen 210 -S-EVDRVYL-NT-P------TELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDY--KHMLCVESAAVE 277 (305)
T ss_pred -c-ceeeEEe-cC-C------ceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhcccccc--ceeEEecccccC
Confidence 1 7899998 52 1 245666777999999876 489999999953211 001112 112 479999986432
Q ss_pred CCCCCCCCCCeEECCCCEEEEEEEEEE
Q 019518 311 NAINQPNFPSVVVRPGESYQHTMLFEF 337 (340)
Q Consensus 311 da~n~~~~~~~~L~pge~~~~~~~y~f 337 (340)
..+.|+||++++++-....
T Consensus 278 --------~pI~L~PG~eW~g~q~Lsi 296 (305)
T KOG1594|consen 278 --------SPITLKPGEEWKGRQLLSI 296 (305)
T ss_pred --------CceeecCCccceeEEEEEE
Confidence 2489999999999876654
No 17
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.6e-20 Score=164.86 Aligned_cols=234 Identities=20% Similarity=0.295 Sum_probs=159.7
Q ss_pred EEEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCccc--ceeecCCCcccCCeEEECCEEEE
Q 019518 9 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFG--CIVGRVANRIKDGKFSLDGVEYT 86 (340)
Q Consensus 9 ~~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G--~~l~p~anRi~~g~~~~~G~~y~ 86 (340)
..+.+.+..-+|.|+.+||.|.||+. .|. +|+|| .++...|..+ .+.+| ||+.||-|++..+.
T Consensus 25 ~~~~~~h~~~~a~islqGAqLLs~qP---~ge-~evLW-LS~~~p~~~g-~aIRGGIPICwPWFG~~~~~~--------- 89 (287)
T COG0676 25 PLIVVDHPLGSAAISLQGAQLLSWQP---KGE-EEVLW-LSSNAPFKGG-AAIRGGIPICWPWFGPLAQQG--------- 89 (287)
T ss_pred CceEeecccceeEEecCCceEEEecC---CCC-CceEE-ecccCccCCC-CcccCCCcEEEeccCccCCCC---------
Confidence 35556666678999999999999998 454 69999 6777778876 56666 89999998888742
Q ss_pred ccCCCCCCccCCCCCCCCccceEEEEEecC-CCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeCCCce
Q 019518 87 LPINKPPNSLHGGFKGFDKVVWEVAEYKKG-ENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPT 165 (340)
Q Consensus 87 l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~-~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~ 165 (340)
+| .||++ |.++|++.++..+ ++..++|.+..++. |..+.+++++++. .+|+++++..|...
T Consensus 90 ~P-------aHG~A---R~~~W~l~~~~~~~~~v~v~f~L~~~~~----p~~~~lr~~~~~g--~~le~~l~~~~~~s-- 151 (287)
T COG0676 90 LP-------AHGFA---RNRPWKLLEHDEDEDGVRVTFGLDLEDE----PHDFTLRLTFRFG--ETLELELESYGEES-- 151 (287)
T ss_pred CC-------ccchh---hcCceeeeehhcccCceEEEEEeCCCcc----ccceEEEEEeecc--ceEEEEEEecChhH--
Confidence 34 79999 9999999998765 44566666665543 8999999999996 57999999977522
Q ss_pred eeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCcc-ccccccccCCCCCcceeeEEe
Q 019518 166 PISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTE-KKIGASINEVPGLGYDHNYVL 244 (340)
Q Consensus 166 p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~-~~l~~~l~~~~~~~~D~~f~l 244 (340)
++.++||||++.+ |++..++=-...++ ++...- + ..+. +.+ ..+. + ..|..|+
T Consensus 152 -~~~AlHtYF~VgD-----i~qv~V~GL~~~~~--~~~~~~--~-~~v~------~~g~~~~~-------~-~~DriY~- 205 (287)
T COG0676 152 -FQAALHTYFRVGD-----IEQVEVSGLGGVCI--DKVLNA--E-EEVT------QHGIVTFP-------G-ETDRIYL- 205 (287)
T ss_pred -HHHhhcceEEecc-----hhheEeccCCceeh--hhhhhc--e-eecc------CCCceeeC-------C-CccEEEE-
Confidence 9999999999987 44544431111111 100000 0 0000 001 1121 1 7999998
Q ss_pred CCCcccCCceeEEEEEeCCCCcEEEEEeC-CCEEEEEcCCCCCCcc-CCCCceeCCceeEEEccCCC
Q 019518 245 DCGEEKSGLKHAAKLKEPSTSRVLNLWTN-APGMQFYTGNYVNGVV-GKGGAVYGKHSGVCLETQGF 309 (340)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~-~p~~~i~t~~~~~~~~-~~~~~~~~~~~~iciEP~~~ 309 (340)
+. .+...|.++.=.|+|++... ...+|+|+|.....+. ...+ ...=..|+||||-..
T Consensus 206 ~~-------~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~d~~-d~gyq~mlCvEta~~ 264 (287)
T COG0676 206 NP-------EPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSSMADMP-DDGYQTMLCVETARV 264 (287)
T ss_pred cC-------CCceEEecCcceEEEEEEecCCCCeEEECCCccccccccccc-cccceEEEEEeeccc
Confidence 53 24678899877999999875 6899999996532211 1110 001257999999743
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.84 E-value=1e-19 Score=168.60 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=140.2
Q ss_pred CCccCCCCCCCCccceEEEEEecC--CCCEEEEEEEeCC-CCCCCCeeEEEEEEEEEeCCCeEEEEEEEeeC-CCceeee
Q 019518 93 PNSLHGGFKGFDKVVWEVAEYKKG--ENPSITFKYRSRD-GEEGYPGDVSVMATYTLTSSTTMRLDMEAVPE-NKPTPIS 168 (340)
Q Consensus 93 ~~~lHG~~~g~~~~~w~v~~~~~~--~~~~v~l~~~~~~-~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~n~-~~~~p~~ 168 (340)
.++|||.+ +..+|+++....+ ++..|+++..... ...+|||.+..+|+|+|. ++.|+|+++|+|. +++||+.
T Consensus 70 ~~~lHG~~---~~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~-~~~l~i~~~VtN~g~~~~P~~ 145 (284)
T cd09023 70 EYPLHGRI---SNTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLG-SNEIRLEDRVTNEGFRPTPHM 145 (284)
T ss_pred cccCcccc---cCCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecC-CceEEEEEEEEeCCCCCCcce
Confidence 59999998 8999999987742 3455777776543 346899999999999997 6899999999998 9999999
Q ss_pred ecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCCCCcc-ccccccccCCCCCcceeeEEeCCC
Q 019518 169 LAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTE-KKIGASINEVPGLGYDHNYVLDCG 247 (340)
Q Consensus 169 ~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~df~~~-~~l~~~l~~~~~~~~D~~f~l~~~ 247 (340)
+++||||..+.. -++++|++++..+.+.|+... .|.. . -.++..+ ..+.+. .+++.+.-+
T Consensus 146 ~~~H~n~~~p~l----~~~~~l~~p~~~~~p~~~~~~-~~~~-~----~~~~~~p~~~~~e~-------v~~~~~~~d-- 206 (284)
T cd09023 146 LLYHVNFGYPLL----DEGARLEIPSKEVTPRDAHAA-EGLA-S----WNTYLAPTPGFAEQ-------VYFHEPAAD-- 206 (284)
T ss_pred EEeeEEcCCccc----CCCCEEEecccccccCChhhc-cccc-c----cccccCCCCCCccE-------EEEEecccc--
Confidence 999999988642 137899999877665553311 1110 0 0123222 112221 355554311
Q ss_pred cccCCceeEEEEEeCCCCcEEEEEeC---CCEEEEEcCCCCCCccCCCCceeCCceeEEEccC-CCCCCCCC--CCCCCe
Q 019518 248 EEKSGLKHAAKLKEPSTSRVLNLWTN---APGMQFYTGNYVNGVVGKGGAVYGKHSGVCLETQ-GFPNAINQ--PNFPSV 321 (340)
Q Consensus 248 ~~~~~~~~~~~l~~~~~~~~l~v~~~---~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciEP~-~~~da~n~--~~~~~~ 321 (340)
.++ ...+.|.++..+..++++.+ +|++++|+.... ....+||||+ +.||+.+. ..-.++
T Consensus 207 --~~g-~~~~~l~~~~~g~~~~l~~~~~~~p~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~~g~l~ 271 (284)
T cd09023 207 --EDG-RAPAALVNPRLGLGVEVRFDTDTLPYLTQWKNTGA------------GAYVLGLEPATNFPNGRAFEREQGELP 271 (284)
T ss_pred --CCC-ceeEEEEcCCCCcEEEEEEehhhCCHHHHHhccCC------------CccEEEEccccCCCcchHHHHHCCCcc
Confidence 122 24688998888766666543 799999997521 1357889998 57888543 123689
Q ss_pred EECCCCEEEEEE
Q 019518 322 VVRPGESYQHTM 333 (340)
Q Consensus 322 ~L~pge~~~~~~ 333 (340)
.|+|||+++..+
T Consensus 272 ~L~PGEs~~~~l 283 (284)
T cd09023 272 TLAPGESRSYRL 283 (284)
T ss_pred eECCCCeEEEee
Confidence 999999887764
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.20 E-value=1.6e-09 Score=100.35 Aligned_cols=270 Identities=13% Similarity=0.152 Sum_probs=146.5
Q ss_pred EEEE-cCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEccCCC--CCCcc
Q 019518 20 VKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINK--PPNSL 96 (340)
Q Consensus 20 ~~i~-~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l~~n~--~~~~l 96 (340)
++|+ .+|..|..... +|. ++ ++++ .+.. |.....+|-.+ |.|.+.+....+.++. ..++|
T Consensus 2 ~~vlp~~g~~iw~a~f---~g~--~l--~~~s--~~~~--P~~g~~~~~~~------g~f~f~~Gl~~~g~p~~~~~~~L 64 (293)
T cd09269 2 LVVLPFMGQMIWDAEF---DGR--DL--TMKN--MFDQ--PRPATEIVDTY------GCFAFHSGLLANGCPGPEDTHPL 64 (293)
T ss_pred eEEecccChhhhheEE---CCE--Ec--cccc--CCCC--CcccceeeccC------ceEEEcCCccccCCCCCCCccCC
Confidence 5677 57888875555 563 44 3333 2332 33211445433 5577777777777554 36899
Q ss_pred CCCCCC-CCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeC-CCeEEEEEEEeeC-CCceeeeecccc
Q 019518 97 HGGFKG-FDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTS-STTMRLDMEAVPE-NKPTPISLAQHT 173 (340)
Q Consensus 97 HG~~~g-~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~-~~~L~i~~~~~n~-~~~~p~~~g~Hp 173 (340)
||-+.. =..+.|.+...+ ++...|+++-... ...+||++|+++.+|+|.. .+.|+|+++|+|. +.|||+.+++||
T Consensus 65 HG~~~~~p~~~~w~~~~~d-~~~~~l~l~g~~~-~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~~~H~ 142 (293)
T cd09269 65 HGEFPCAPMDEAWLEVGED-ASGDYLALTGEYE-YVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMYMCHM 142 (293)
T ss_pred cCCcCCCCccceEEEEEec-CCCCEEEEEEEEE-eeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhEeccc
Confidence 999410 035555555432 1134455544432 2368999999999999983 4899999999998 999999999999
Q ss_pred eeecCCCCCCCccCcEEEEeC-CeEEeeCCCCCCCccccccCC-CCCC--C-CccccccccccCCCCCcce--eeEEeCC
Q 019518 174 YWNLAGHHSGNILDHSIQIWG-SHITPVDQNTVPTGEIMPVKG-TPFD--F-TTEKKIGASINEVPGLGYD--HNYVLDC 246 (340)
Q Consensus 174 yF~l~~~~~~~i~~~~l~~~a-~~~~~~d~~~lptG~~~~~~~-~~~d--f-~~~~~l~~~l~~~~~~~~D--~~f~l~~ 246 (340)
+|.... +.+|..+. +.-.++. ..+|. ...+.+. .+++ . ..+.... .+. .+. .+| .+|....
T Consensus 143 nfg~~~-------garl~~p~~~~~~~~~-~~~p~-~v~p~~~w~~~~~~~~~~~~~~~-~~~-~P~-~~~~E~V~~~~~ 210 (293)
T cd09269 143 NYAYVE-------GARIVQNLPDEAFVLR-RSVPA-HVKPTPAWLAYNEALVADPARGD-VLD-KPD-LYDPEIVFFADD 210 (293)
T ss_pred ccCCCC-------CCEEEccCCcccceee-ecccC-ccCCchhhccchHHHhhCchhhh-hcc-CCC-CCCccEEEEeec
Confidence 998633 45555432 1112221 11221 1000000 0000 0 0000000 000 000 132 4454332
Q ss_pred CcccCCceeEEEEEeCCCCcEEEEEe--C-CCEEEEEcCCCCCCccCCCCceeCCceeEEE-ccC-CCCCCCCCC-CC-C
Q 019518 247 GEEKSGLKHAAKLKEPSTSRVLNLWT--N-APGMQFYTGNYVNGVVGKGGAVYGKHSGVCL-ETQ-GFPNAINQP-NF-P 319 (340)
Q Consensus 247 ~~~~~~~~~~~~l~~~~~~~~l~v~~--~-~p~~~i~t~~~~~~~~~~~~~~~~~~~~ici-EP~-~~~da~n~~-~~-~ 319 (340)
..+.++ ...+.|.+++.+ .+.+.. + .|++..|-..+.+ ..-.++ ||. +.|+..... +. .
T Consensus 211 ~~~~~~-~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~~------------~~v~~~~~PaT~~p~g~~~ar~~G~ 276 (293)
T cd09269 211 LGKYTG-WAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNGD------------QQVAAFALPATCRPEGYLAAKEAGT 276 (293)
T ss_pred ccccCC-cEEEEEECCCCC-EEEEEEchhhCChhheehhcCCC------------cceEEEEccCCCCcCChHHHHHCCC
Confidence 111122 357888888755 555554 3 6999999743211 234555 495 556633221 11 3
Q ss_pred CeEECCCCEEEEEEE
Q 019518 320 SVVVRPGESYQHTML 334 (340)
Q Consensus 320 ~~~L~pge~~~~~~~ 334 (340)
++.|+|||+.+..++
T Consensus 277 l~~L~pGe~~~f~l~ 291 (293)
T cd09269 277 LRTLAPGETRRFSVT 291 (293)
T ss_pred cceeCCCCeEEEEEe
Confidence 689999999988765
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.13 E-value=1.3e-08 Score=94.84 Aligned_cols=276 Identities=18% Similarity=0.183 Sum_probs=142.9
Q ss_pred ccEEEEEEe-CCEEEEEE-cCCceEEEEEEeCCCCceeceEeCCC----Cchhhh---cC-C-CCccc--ceeecCCCcc
Q 019518 7 KPEVFELNN-GSMQVKIT-NYGAIITSLSVPDKHGNWADVVLGFD----SVEPYV---KG-A-APFFG--CIVGRVANRI 73 (340)
Q Consensus 7 ~~~~~~L~n-~~~~~~i~-~~Ga~i~~~~~~~~~G~~~~vl~g~~----~~~~~~---~~-~-~~~~G--~~l~p~anRi 73 (340)
.+..++|+| ++++++|+ .+|.-|.++.. +|. ++-|... .+..|. +. . ..|.| ...|.-.+.
T Consensus 3 Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~---~G~--~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G- 76 (302)
T PF14486_consen 3 GVRALEIRNGGGLRFTVLPDRGMDIWDAEF---DGV--NLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNG- 76 (302)
T ss_dssp T-EEEEEEETTS-EEEEETTTTTEEEEEEE---TTE--EE----S-----GGG--HHHHTGGGGT---SEEEEEES--S-
T ss_pred CcEEEEEECCCCcEEEEecccCCceEEEEE---CCE--EecccCCCcCCCCccccccCCcchhhcccchheeeccccCC-
Confidence 467899999 89999999 69999999999 674 7665211 122221 00 0 11222 111111110
Q ss_pred cCCeEEECCEEEEccCCCCCCccCCCCCCCCccceEEEEEecC--CCCEEEEEEEeCCCCCCCCeeEEEEEEEEEe-CCC
Q 019518 74 KDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG--ENPSITFKYRSRDGEEGYPGDVSVMATYTLT-SST 150 (340)
Q Consensus 74 ~~g~~~~~G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~--~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~-~~~ 150 (340)
.--..+|.. ++|||-. +..+|+.+..+.. +...|.++-.... ...|-.++.++=++++. ..+
T Consensus 77 --~P~~~~g~~---------~~LHG~i---~~~Pa~~v~~~~~~~~~~~i~v~G~v~~-~~~fg~~l~l~r~i~~~~g~~ 141 (302)
T PF14486_consen 77 --APSEDDGET---------YPLHGRI---SNTPAEHVWLEIWDGDGYEIEVSGEVRE-AAGFGENLRLERTIRLRAGSN 141 (302)
T ss_dssp --S-EEETTEE---------E-TTBSG---GGS--SEEEEEEESSTT--EEEEEEEEE-EETTTEEEEEEEEEEE-TT-S
T ss_pred --CCCCcCCcc---------ccccccc---cCCCcceEEEEEecCCCcEEEEEEEEEE-EEeccCcEEEEEEEEEECCCc
Confidence 001222332 5689998 7888876555432 3446666544332 23455677777777775 468
Q ss_pred eEEEEEEEeeC-CCceeeeecccceeecCCCCCCCccCcEEEEeCCeEEeeCCCCCCCccccccCCCCCC-CCccccccc
Q 019518 151 TMRLDMEAVPE-NKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFD-FTTEKKIGA 228 (340)
Q Consensus 151 ~L~i~~~~~n~-~~~~p~~~g~HpyF~l~~~~~~~i~~~~l~~~a~~~~~~d~~~lptG~~~~~~~~~~d-f~~~~~l~~ 228 (340)
.++|..+|+|. ..|||+.+-+|+=|-.+.-+ ++.+|..+..+.++.|+..... . ..++ +..+..
T Consensus 142 ~i~i~d~VtN~~~~p~p~m~lyH~N~G~pll~----eg~ri~~p~~~~~~~~~~a~~~-----~--~~~~~~~~P~~--- 207 (302)
T PF14486_consen 142 TIRIEDRVTNLGFQPMPLMYLYHMNFGYPLLD----EGARIVAPTKEVTPRDDRAAEG-----I--ADWDRMPAPQP--- 207 (302)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEEE-TTT-S----TT-EEE--EEEEEESSGGGGGG-----S--TTTTB---S-T---
T ss_pred EEEEEEEEEECCCCCchhHHhhhhccCccccC----CCcEEEcCcccccCCchhhhcC-----C--ccceecCCCCC---
Confidence 99999999997 99999999999999888422 3678888888877665321110 0 0111 111111
Q ss_pred cccCCCCCcceeeEEeCCCcccCCceeEEEEEeCCCCcEEEEEeC---CCEEEEEcCCCCCCccCCCCceeCCceeEEEc
Q 019518 229 SINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTN---APGMQFYTGNYVNGVVGKGGAVYGKHSGVCLE 305 (340)
Q Consensus 229 ~l~~~~~~~~D~~f~l~~~~~~~~~~~~~~l~~~~~~~~l~v~~~---~p~~~i~t~~~~~~~~~~~~~~~~~~~~iciE 305 (340)
+ .-+.+|..+...+.+| ...+.|.++..++.+.+..+ .|++..|-.-.. ..-.++||
T Consensus 208 ------~-~~E~Vy~~~~~~d~~G-~~~~~l~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~------------~~yv~gLE 267 (302)
T PF14486_consen 208 ------G-FPEQVYFHDLLADEDG-WAHAALVNPDGGLGFEVRFDTSQLPYLTQWKNYGG------------GEYVLGLE 267 (302)
T ss_dssp ------T----EEEEEEE---TTS-EEEEEEE-SSSS-EEEEEEETTTS-EEEEEEEES-------------T-EEEEEE
T ss_pred ------C-CCcEEEEecccccCCC-cEEEEEECCCCCcEEEEEEchHHCChhHhheeCCC------------CEeEEEEe
Confidence 0 1124444332112234 34688888888777777653 699999986321 24579999
Q ss_pred cC-CCCCCCCCC--CCCCeEECCCCEEEEEEEEEE
Q 019518 306 TQ-GFPNAINQP--NFPSVVVRPGESYQHTMLFEF 337 (340)
Q Consensus 306 P~-~~~da~n~~--~~~~~~L~pge~~~~~~~y~f 337 (340)
|. +.|+..... .-.+..|+|||+.+.++++.+
T Consensus 268 P~T~~p~g~~~~~~~G~l~~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 268 PATCRPEGRAAAREAGTLPMLAPGESREFSLEFGV 302 (302)
T ss_dssp EESS-SS-HHHHHHTT--EEE-TT-EEEEEEEEE-
T ss_pred cccCCCCCHHHHHhCCCcceECCCCeEEEEEEecC
Confidence 96 667643211 113789999999999887753
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=98.06 E-value=0.008 Score=55.47 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=76.0
Q ss_pred EEEEEEeCCEEEEEE-cCCceEEEEEEeCCCCceeceEeCCCCchhhhcCCCCcccceeecCCCcccCCeEEECCEEEEc
Q 019518 9 EVFELNNGSMQVKIT-NYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTL 87 (340)
Q Consensus 9 ~~~~L~n~~~~~~i~-~~Ga~i~~~~~~~~~G~~~~vl~g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~G~~y~l 87 (340)
.+++|+|+.+++.|+ ..|++|+++...+ | .|+++.-.... .. +.. .....| ++.. +.+.+.-
T Consensus 5 ~~~~l~N~~i~l~Vtp~~GgRIl~~~~~g--~--~N~~~~~~~~~---~~-~~~--~~~~~~--~~~G-----GhrlW~~ 67 (274)
T PF14315_consen 5 NCLRLSNGDIELIVTPDVGGRILSFGLNG--G--ENLFGEANEIQ---PA-PGV--SGDSGW--INYG-----GHRLWPS 67 (274)
T ss_pred eEEEEECCCEEEEEecCCCCEEEEEEeCC--C--ceEEeeccccc---cc-ccc--CCcccc--cCCC-----cceeecC
Confidence 689999999999999 7999999998843 3 37772111000 00 000 000000 1111 1222333
Q ss_pred cCCCCCCccCCCCC--CCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCC-eEEEEEEEeeC-CC
Q 019518 88 PINKPPNSLHGGFK--GFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSST-TMRLDMEAVPE-NK 163 (340)
Q Consensus 88 ~~n~~~~~lHG~~~--g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~-~L~i~~~~~n~-~~ 163 (340)
|.+.....-..... -+...+|+++. . ++.|+|+-..+... -+.++.+|+|.++. .++|+.+++|. +.
T Consensus 68 Pe~~~r~~~~~~~Pd~~ld~~p~~~~~-~---~~~v~L~s~~~~~t-----giq~~~~i~l~~~~~~i~v~~~i~N~~~~ 138 (274)
T PF14315_consen 68 PENPPRTSKWVWPPDPVLDNGPYEVEI-D---DDGVRLTSPPSPKT-----GIQKERTITLDADRPSIEVTHRITNIGDW 138 (274)
T ss_pred CCCccccccccCCCcccccCCceeEEE-c---CCEEEEecCCCCcc-----CcEEEEEEEECCCCCEEEEEEEEEeCCCC
Confidence 33211000011110 02467788877 4 67887766543311 37889999998543 69999999997 66
Q ss_pred ceeeeecccceee
Q 019518 164 PTPISLAQHTYWN 176 (340)
Q Consensus 164 ~~p~~~g~HpyF~ 176 (340)
+.+ ++++++
T Consensus 139 ~~~----~a~W~~ 147 (274)
T PF14315_consen 139 PVE----WAPWSV 147 (274)
T ss_pred cce----eeeeee
Confidence 555 444554
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=94.41 E-value=1.1 Score=43.13 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=26.1
Q ss_pred cEEEEEEeCCEEEEEEcCCceEEEEEEeC
Q 019518 8 PEVFELNNGSMQVKITNYGAIITSLSVPD 36 (340)
Q Consensus 8 ~~~~~L~n~~~~~~i~~~Ga~i~~~~~~~ 36 (340)
...++|+|+.++++|++.||.|.++.+++
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~ 101 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKK 101 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeecccc
Confidence 35799999999999999999999999864
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=93.98 E-value=0.64 Score=42.43 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEEeCCEEEEEEcCCceEEEEEEeC
Q 019518 10 VFELNNGSMQVKITNYGAIITSLSVPD 36 (340)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~~~~~~ 36 (340)
+++|+|+.++|+|++.||.|.++.+++
T Consensus 1 ~v~ven~~~~~~~s~~GG~i~~~~Lk~ 27 (270)
T PF14849_consen 1 RVTVENDLFKVTFSSKGGRIKSVELKK 27 (270)
T ss_dssp -EEEE-SS-EEEEETBTTEEEEEEEEE
T ss_pred CEEEECCCEEEEEECCCCeEEEEEcCC
Confidence 479999999999999999999999963
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=87.02 E-value=15 Score=37.20 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=25.3
Q ss_pred EEEEEeCCEEEEEEcCCceEEEEEEeC
Q 019518 10 VFELNNGSMQVKITNYGAIITSLSVPD 36 (340)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~~~~~~ 36 (340)
.++++|+.++++|++.||.|.++.+++
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~ 66 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKK 66 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccC
Confidence 899999999999999999999999864
No 25
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=84.17 E-value=12 Score=34.44 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=24.8
Q ss_pred EEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEe
Q 019518 12 ELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVL 46 (340)
Q Consensus 12 ~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~ 46 (340)
+|++++.++.|...-|.|.+|+. +|+ ++|.
T Consensus 1 tV~g~~f~~~Fdk~~G~l~s~~~---~g~--~ll~ 30 (276)
T PF02929_consen 1 TVSGKDFSYVFDKKTGTLTSYKY---NGK--ELLK 30 (276)
T ss_dssp -EEETTEEEEEETTTTCEEEEEE---TTE--EEEC
T ss_pred CCccCCEEEEEECCCCeEEEEEE---CCE--Eeec
Confidence 57788999999987889999998 674 7875
No 26
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=56.99 E-value=3e+02 Score=30.53 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=28.4
Q ss_pred EEEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeCCCCc
Q 019518 9 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSV 51 (340)
Q Consensus 9 ~~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g~~~~ 51 (340)
..+.|.+++.++.|...=|.|++++. +|+ ++|.....+
T Consensus 749 ~~~~i~~~~~~~~f~~~~G~l~s~~~---~g~--~~l~~~~~~ 786 (1027)
T PRK09525 749 QDFCIELGNQRWQFNRQSGLLSQWWV---GGK--EQLLTPLRD 786 (1027)
T ss_pred CeEEEEECCEEEEEECCCceEEEEEE---CCE--EeeccCCcC
Confidence 35677788899999987889999998 675 777643333
No 27
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=52.39 E-value=3.2e+02 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=25.2
Q ss_pred EEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEeC
Q 019518 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLG 47 (340)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~g 47 (340)
.+.|.+++.++.|...=|.|++|+. +|+ ++|..
T Consensus 725 ~~~i~~~~~~~~fdk~tG~l~s~~~---~g~--~ll~~ 757 (1021)
T PRK10340 725 SCTVRGYNFAITFSKVSGKLTSWQV---NGE--SLLTR 757 (1021)
T ss_pred EEEEEeCCEEEEEECCcceEEEEEe---CCe--eeecC
Confidence 4666777888888877788999998 664 77653
No 28
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=38.68 E-value=1.3e+02 Score=27.71 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEe
Q 019518 103 FDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAV 159 (340)
Q Consensus 103 ~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~~~~~L~i~~~~~ 159 (340)
+..++|++.... ..|+|+-.-.- -+..+.++=+|+|. .++|.|+|+++
T Consensus 121 F~~~~y~~~~~~----~~v~f~r~G~~----~~~~~~l~K~y~l~-~~~l~V~Y~l~ 168 (278)
T PF09095_consen 121 FANQPYELEVNR----DEVTFERDGGV----EGHPITLEKRYRLT-KNGLQVDYRLT 168 (278)
T ss_dssp -SSS--EEEEES----SEEEEEEEEEE----SEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred ccCCceEEEecC----CceEEEEeccc----ccCceEEEEEEEEc-CCEEEEEEEEE
Confidence 467889987764 34777654321 57789999999998 58999999997
No 29
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=36.28 E-value=2.7e+02 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.9
Q ss_pred CccEEEEEEeCCEEEEEEcCCceEEEEEEeC
Q 019518 6 LKPEVFELNNGSMQVKITNYGAIITSLSVPD 36 (340)
Q Consensus 6 ~~~~~~~L~n~~~~~~i~~~Ga~i~~~~~~~ 36 (340)
+...-|.|+|+.+.+.|+++||+|..+.+|=
T Consensus 223 ~~~~~~~l~~~y~q~~~s~~~g~~~~inlp~ 253 (795)
T PRK01001 223 ASGSYYVLSNEYMQLVVSQESGAIEGINLPF 253 (795)
T ss_pred ccccEEEEeccceEEEEecCCcceeeeccCc
Confidence 3445799999999999999999999998874
No 30
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=33.74 E-value=2.3e+02 Score=23.90 Aligned_cols=71 Identities=25% Similarity=0.443 Sum_probs=44.6
Q ss_pred CCCcccCCeEEEC-CEEEEccCCCCCCccCCCCCCCCccceEEEEEecCCCCEEEEEEE-eCC----CCCCCCeeEEEEE
Q 019518 69 VANRIKDGKFSLD-GVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYR-SRD----GEEGYPGDVSVMA 142 (340)
Q Consensus 69 ~anRi~~g~~~~~-G~~y~l~~n~~~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~-~~~----~~~~yP~~~~~~v 142 (340)
|++.+.+|+-+++ |-.|.+..|+ ++..|.|...+++ .++ ++- .|. +...=-|+|.=.+
T Consensus 1 ws~~v~dgkati~lgd~Y~I~~~e------------~ds~~~itnk~tG---~~T-riwGDPHvd~~Gdg~~~fDFk~~~ 64 (171)
T PF07481_consen 1 WSHEVKDGKATIDLGDGYTIEANE------------KDSEWTITNKQTG---ETT-RIWGDPHVDADGDGKTDFDFKGDM 64 (171)
T ss_pred CCccccCCeeEEecCCceEEEecC------------CcceEEEecCCCC---cEe-EEeCCCccccCCCcccceeecCce
Confidence 5567788888887 7789999776 4567888876522 222 221 121 1112246888899
Q ss_pred EEEEeCCCeEEEE
Q 019518 143 TYTLTSSTTMRLD 155 (340)
Q Consensus 143 ~y~L~~~~~L~i~ 155 (340)
+|.|+.+..++|.
T Consensus 65 tf~L~DGTKItV~ 77 (171)
T PF07481_consen 65 TFQLDDGTKITVD 77 (171)
T ss_pred EEEeCCCCEEEEe
Confidence 9999744544443
No 31
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.03 E-value=1.1e+02 Score=26.32 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCEEEEEcCCCCCCc-----------cCCCCceeCCceeEEEccCC
Q 019518 265 SRVLNLWTNAPGMQFYTGNYVNGV-----------VGKGGAVYGKHSGVCLETQG 308 (340)
Q Consensus 265 ~~~l~v~~~~p~~~i~t~~~~~~~-----------~~~~~~~~~~~~~iciEP~~ 308 (340)
++.|.|.-.+..+.+|...+..+. |+..|.=+.+-..+|+|-|.
T Consensus 84 q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~KveCFCFteq~ 138 (195)
T COG3175 84 QREVYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQT 138 (195)
T ss_pred CceeEeccCceEEEEEEEecCCCCCceeEEecccChhHhhhheeeeeEEEeeecc
Confidence 445555555556666665544332 12222223345678887664
No 32
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=25.55 E-value=4.6e+02 Score=23.01 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.1
Q ss_pred EEEEEeCCEEEEEEcCCceEEEEEEeCCCCceeceEe
Q 019518 10 VFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVL 46 (340)
Q Consensus 10 ~~~L~n~~~~~~i~~~Ga~i~~~~~~~~~G~~~~vl~ 46 (340)
.++|.|+-++|+|+.-||.|++++. +|. +.|+
T Consensus 17 ~VvldNGiVqVtls~p~G~VtgIkY---nGi--~NLl 48 (203)
T PF06045_consen 17 QVVLDNGIVQVTLSKPGGIVTGIKY---NGI--DNLL 48 (203)
T ss_pred EEEEECCEEEEEEcCCCceEEEEEE---CCE--ehhh
Confidence 5888999999999999999999998 674 4444
No 33
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=22.73 E-value=5.4e+02 Score=22.73 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=52.4
Q ss_pred CeEEECCEEEEccCCCC--CCccCCCCCCCCccceEEEEEecCCCCEEEEEEEeCCCCCCCCeeEEEEEEEEEe-CCCeE
Q 019518 76 GKFSLDGVEYTLPINKP--PNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLT-SSTTM 152 (340)
Q Consensus 76 g~~~~~G~~y~l~~n~~--~~~lHG~~~g~~~~~w~v~~~~~~~~~~v~l~~~~~~~~~~yP~~~~~~v~y~L~-~~~~L 152 (340)
.+..++|+.|+|..|+- +-.-.|+. ....|+.+ ..-+..+... ++.++-+.-+. ..|++
T Consensus 48 e~v~~~g~~~~L~t~~~~~~~~p~G~~---~L~~F~~~-------~~P~w~y~~~--------~~~l~k~i~M~~g~Nt~ 109 (223)
T PF12439_consen 48 ETVIVDGRSYPLSTNEYPDGVYPDGYK---YLESFRLE-------PLPVWRYRVG--------DVVLEKRIFMVHGENTT 109 (223)
T ss_pred eEEEECCeEEEeEccccCCCcCcchhe---eeeEEEcC-------CCeEEEEEEC--------CEEEEEEEEEECCCCEE
Confidence 34556999999998862 22334443 12233322 2334444432 36666666665 45889
Q ss_pred EEEEEEeeCCCceeeeecccceeecCC
Q 019518 153 RLDMEAVPENKPTPISLAQHTYWNLAG 179 (340)
Q Consensus 153 ~i~~~~~n~~~~~p~~~g~HpyF~l~~ 179 (340)
.|.|++.+ .+-|+.+...|+++..+
T Consensus 110 ~i~Y~l~~--~~~~~~L~l~Pl~~~R~ 134 (223)
T PF12439_consen 110 VIRYRLLN--GSEPVTLRLRPLVNFRD 134 (223)
T ss_pred EEEEEEcc--CCCceEEEEEEeEeeEc
Confidence 99998754 35588999999998775
No 34
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=20.92 E-value=83 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCCCchhhhcCCCCcccceeecCCCcccCCeEEEC
Q 019518 47 GFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLD 81 (340)
Q Consensus 47 g~~~~~~~~~~~~~~~G~~l~p~anRi~~g~~~~~ 81 (340)
|.-+++.|.++ + |+|+-|.--.|.-|.|++.
T Consensus 15 gpi~p~syfgn-~---gai~~p~I~k~aTGeytIt 45 (142)
T PF05660_consen 15 GPIDPDSYFGN-P---GAIMDPEIEKIATGEYTIT 45 (142)
T ss_pred CCcCchhccCC-C---ccccChhhhhhccCceEEE
Confidence 45567777776 4 7899998888888998763
Done!